Query psy6872
Match_columns 112
No_of_seqs 114 out of 1039
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 20:34:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 99.9 8.7E-22 3E-26 162.3 12.3 107 6-112 927-1034(1034)
2 2zxe_A Na, K-ATPase alpha subu 99.8 6.4E-20 2.2E-24 151.2 11.3 107 6-112 922-1028(1028)
3 3ar4_A Sarcoplasmic/endoplasmi 99.7 1.1E-16 3.7E-21 131.7 11.5 100 5-104 895-995 (995)
4 1mhs_A Proton pump, plasma mem 99.2 6.7E-12 2.3E-16 102.8 5.7 96 5-108 791-886 (920)
5 3b8c_A ATPase 2, plasma membra 98.1 7.8E-09 2.7E-13 84.5 -9.4 93 5-101 751-844 (885)
6 2iub_A CORA, divalent cation t 23.9 58 0.002 23.5 3.0 6 101-106 358-363 (363)
7 2zuq_A Disulfide bond formatio 8.6 88 0.003 20.3 0.4 8 73-80 141-148 (176)
8 1ghh_A DINI, DNA-damage-induci 6.9 4E+02 0.014 15.1 2.7 19 85-103 17-35 (81)
9 1xkm_B Distinctin chain B; por 4.5 3.3E+02 0.011 11.7 1.0 11 90-100 6-16 (26)
10 2ifo_A Inovirus; helical virus 4.4 4.9E+02 0.017 13.1 3.7 22 78-99 23-44 (46)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.87 E-value=8.7e-22 Score=162.29 Aligned_cols=107 Identities=35% Similarity=0.699 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872 6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA 84 (112)
Q Consensus 6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~ 84 (112)
.+||++|.+++++|++|+++||+++.++|+.++ +|++++++++++++++++++|+|+++.+|++.|+++.+|..+++.+
T Consensus 927 ~~~t~~f~~lv~~q~~~~~~~r~~~~s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~ 1006 (1034)
T 3ixz_A 927 TCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFG 1006 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCCCHHHHHHHHHHH
Confidence 489999999999999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872 85 VLIVIYGEFGKIISRLYPNSFMAHHLTF 112 (112)
Q Consensus 85 ~~~~~~~e~~K~~~r~~~~~~~~~~~~~ 112 (112)
++++++.|++|++.|++|++|+++.+.|
T Consensus 1007 ~~~~~~~e~~K~~~r~~~~~~~~~~~~~ 1034 (1034)
T 3ixz_A 1007 LLIFVYDEIRKLGVRCCPGSWWDQELYY 1034 (1034)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhheecC
Confidence 9999999999999999999999998766
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.82 E-value=6.4e-20 Score=151.18 Aligned_cols=107 Identities=40% Similarity=0.724 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHHH
Q psy6872 6 TCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAV 85 (112)
Q Consensus 6 ~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~~ 85 (112)
++||++|.+++++|++|.++||+++.++|+.+++|++++++++++++++++++|+|+++.+|+++|+++.+|.++++.++
T Consensus 922 ~~~T~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~ 1001 (1028)
T 2zxe_A 922 TCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYCPGTDVALRMYPLKPSWWFCAFPYSL 1001 (1028)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSSCHHHHCSCCHHHHHHHHHHHHHHHHHHHSTTHHHHTCCCCCCGGGGGTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcchhccCCcCHHHHHHHHHHHHHHHHHHHhhhHHhhhcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999988888877899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchhhhccC
Q psy6872 86 LIVIYGEFGKIISRLYPNSFMAHHLTF 112 (112)
Q Consensus 86 ~~~~~~e~~K~~~r~~~~~~~~~~~~~ 112 (112)
..+++.|++|++.|+++++|+++.+-|
T Consensus 1002 ~~~~~~e~~k~~~r~~~~~~~~~~~~~ 1028 (1028)
T 2zxe_A 1002 IIFLYDEMRRFIIRRSPGGWVEQETYY 1028 (1028)
T ss_dssp HHHHHHHHHHHHHHHCTTSHHHHHHCC
T ss_pred HHHHHHHHHHHHHHccCcchhHhhhcC
Confidence 999999999999999999999998755
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.70 E-value=1.1e-16 Score=131.68 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCccccccc-ccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872 5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI 83 (112)
Q Consensus 5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~-~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~ 83 (112)
.++||++|++++++|++|.++||+.+.++|..+. +|++++++++++++++++++|+|+++++|++.|+++.+|..+++.
T Consensus 895 ~~~~t~~f~~lv~~~~~~~~~~r~~~~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~ 974 (995)
T 3ar4_A 895 PEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKI 974 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhccccchhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 3589999999999999999999999988888787 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q psy6872 84 AVLIVIYGEFGKIISRLYPNS 104 (112)
Q Consensus 84 ~~~~~~~~e~~K~~~r~~~~~ 104 (112)
++..+++.|++|++.|++++|
T Consensus 975 ~~~~~~~~e~~k~~~r~~~~~ 995 (995)
T 3ar4_A 975 SLPVIGLDEILKFIARNYLEG 995 (995)
T ss_dssp HTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999988765
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.24 E-value=6.7e-12 Score=102.78 Aligned_cols=96 Identities=7% Similarity=0.038 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHHH
Q psy6872 5 STCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIA 84 (112)
Q Consensus 5 ~~a~t~~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~~ 84 (112)
.++||++|.+++++|+++.+++|+.+. +++ +..|+++++++++..+++..+.|.| +|++.|+++.+|+.+++.+
T Consensus 791 ~~~~T~~f~~lv~~~~~~~~~~R~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~f~~~~l~~~~~~~~~~~~ 864 (920)
T 1mhs_A 791 GNMDEVLFLQISLTENWLIFITRANGP-FWS-SIPSWQLSGAIFLVDILATCFTIWG----WFEHSDTSIVAVVRIWIFS 864 (920)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSSSCSSS-CSC-CSCTHHHHHHHHHHHHHHHHHHSSS----STTSCSHHHHTHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccchh-hhc-CchHHHHHHHHHHHHHHHHHHHHhh----hhccCCCCHHHHHHHHHHH
Confidence 468999999999999999999999765 443 5588988888888887777777766 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhh
Q psy6872 85 VLIVIYGEFGKIISRLYPNSFMAH 108 (112)
Q Consensus 85 ~~~~~~~e~~K~~~r~~~~~~~~~ 108 (112)
++.+++.|+.|++.++. .|+++
T Consensus 865 ~~~~~~~e~~k~~~~~~--~~fd~ 886 (920)
T 1mhs_A 865 FGIFCIMGGVYYILQDS--VGFDN 886 (920)
T ss_dssp THHHHHHHHHHHCCCCC--CTTHH
T ss_pred HHHHHHHHHHHHHHhhh--HHHHH
Confidence 99999999999875554 35543
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=98.13 E-value=7.8e-09 Score=84.53 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=68.4
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHhcCCCcccccccccHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCcchhHHHHHH
Q psy6872 5 STCQTA-YFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPI 83 (112)
Q Consensus 5 ~~a~t~-~F~~lv~~ql~~~~~~Rs~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~vp~l~~~f~~~pl~~~~w~~~~~~ 83 (112)
.++||+ +|.+++++|+ +.|+||+++.++++.+ .|++.+..++..++++++.+|.+ ..++++.|+++.+|.++++.
T Consensus 751 ~~~~t~~~~~~~~~~~~-~~~~~Rs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 826 (885)
T 3b8c_A 751 HELMGAVYLQVSIISQA-LIFVTRSRSWSFVERP-GALLMIAFLIAQLIATLIAVYAN--WEFAKIRGIGWGWAGVIWLY 826 (885)
T ss_dssp HHHHTTTTTTTSSTTGG-GTTCSSSCTTTSTTST-TTTTSGGGSSTTTTTTSSSSSCC--CCSSCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhccCCCCcccCc-cHHHHHHHHHHHHHHHHHHHhcc--ccccccCCchHHHHHHHHHH
Confidence 346555 6667888887 8999999887665533 66655555555555566666653 24457999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC
Q psy6872 84 AVLIVIYGEFGKIISRLY 101 (112)
Q Consensus 84 ~~~~~~~~e~~K~~~r~~ 101 (112)
+++.+++.|++|++.|+.
T Consensus 827 ~~~~~~~~e~~k~~~~~~ 844 (885)
T 3b8c_A 827 SIVTYFPLDVFKFAIRYI 844 (885)
T ss_dssp TGGGTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999887764
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.93 E-value=58 Score=23.46 Aligned_cols=6 Identities=0% Similarity=0.257 Sum_probs=2.2
Q ss_pred CCCCch
Q psy6872 101 YPNSFM 106 (112)
Q Consensus 101 ~~~~~~ 106 (112)
++|+|+
T Consensus 358 krk~Wl 363 (363)
T 2iub_A 358 KKKKWL 363 (363)
T ss_dssp TSCC--
T ss_pred HHcccC
Confidence 346674
No 7
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=8.60 E-value=88 Score=20.27 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=3.6
Q ss_pred CcchhHHH
Q psy6872 73 KMKYWLTP 80 (112)
Q Consensus 73 ~~~~w~~~ 80 (112)
|..+|...
T Consensus 141 smp~wsli 148 (176)
T 2zuq_A 141 EMPQWLLG 148 (176)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 34455443
No 8
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=6.93 E-value=4e+02 Score=15.05 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q psy6872 85 VLIVIYGEFGKIISRLYPN 103 (112)
Q Consensus 85 ~~~~~~~e~~K~~~r~~~~ 103 (112)
....+-.|+.|++.+.+|+
T Consensus 17 a~~aL~~EL~kRl~~~fpd 35 (81)
T 1ghh_A 17 AIDALAGELSRRIQYAFPD 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 4456678999999999886
No 9
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=4.53 E-value=3.3e+02 Score=11.66 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=7.3
Q ss_pred HHHHHHHHHHh
Q psy6872 90 YGEFGKIISRL 100 (112)
Q Consensus 90 ~~e~~K~~~r~ 100 (112)
..|.+|++...
T Consensus 6 liearkyleql 16 (26)
T 1xkm_B 6 LIEARKYLEQL 16 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46778877544
No 10
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=4.36 E-value=4.9e+02 Score=13.09 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6872 78 LTPLPIAVLIVIYGEFGKIISR 99 (112)
Q Consensus 78 ~~~~~~~~~~~~~~e~~K~~~r 99 (112)
..+-...+..+.....+||++|
T Consensus 23 ~~IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 23 AAIGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Done!