RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6872
(112 letters)
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 126 bits (317), Expect = 5e-35
Identities = 45/103 (43%), Positives = 63/103 (61%)
Query: 3 LESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPY 62
+E TC TA+F+SIV+ Q A LI+CKTR NS++QQ M N +L GL E +A LSY P
Sbjct: 888 VEFTCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPG 947
Query: 63 LNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSF 105
+ L+ P+K +W P ++LI +Y E K+I R P +
Sbjct: 948 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEIRKLIIRRNPGGW 990
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 68.4 bits (168), Expect = 1e-15
Identities = 21/98 (21%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 1 MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMN-NWVLNIGLVFEILVAFVLSY 59
++ QT F ++V++Q + ++ S+++ + N +L + ++ +L+ ++ Y
Sbjct: 78 ISESGLAQTMAFNTLVLSQLFNALNARSLRRSLFKIGLFSNKLLLLAVLLSLLLQLLIIY 137
Query: 60 SPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKII 97
P L V T P+ ++ WL L +A+++++ E K++
Sbjct: 138 VPGLQAVFGTTPLSLEQWLIVLGLALVVLLVVELRKLL 175
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 40.4 bits (95), Expect = 5e-05
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 8 QTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLN-K 65
QT F +V+ Q + ++R + +N L + L+ I++ ++ + P LN K
Sbjct: 820 QTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLK 879
Query: 66 VLKTRPVKMKYWLTPLPIAV--LIVIYGEFGKIISR 99
+ + P+ + WL + +A+ L ++ E K+ SR
Sbjct: 880 IFQPTPLSLFEWLIAIAVALLLLYIVVSELYKLKSR 915
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 31.3 bits (71), Expect = 0.085
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 37 KMNNWVLNIGLVFEILVAFVLS----YSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGE 92
+M WV N L+ I ++ L Y P+L+++ P+ + WL L +++ +++ E
Sbjct: 852 RMPPWV-NKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSLTDWLMVLKLSLPVILVDE 910
Query: 93 FGKIISR 99
K SR
Sbjct: 911 VLKFFSR 917
>gnl|CDD|184415 PRK13953, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 125
Score = 26.7 bits (59), Expect = 2.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 81 LPIAVLIVIYGEFGKIISRLYPNSFM 106
L +AV +VI FGKI+S L N M
Sbjct: 15 LDLAVAVVIGAAFGKIVSSLVNNIIM 40
>gnl|CDD|237156 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 761
Score = 27.2 bits (61), Expect = 2.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 45 IGLVFEILVAFVLSYSPYLNKVLKT------RPVKMKYWLTPLPIAVLIVIYGEFGKIIS 98
+G + VAF++ P+L K+++T PV M WL P +AVL +++G F
Sbjct: 402 LGNALMVAVAFLVGIKPFLGKLVETPKHPHEAPVLM--WLGPAVLAVLGLLFGLFPFFFH 459
Query: 99 RL 100
Sbjct: 460 AA 461
>gnl|CDD|190632 pfam03431, RNA_replicase_B, RNA replicase, beta-chain. This family
is of Leviviridae RNA replicases. The replicase is also
known as RNA dependent RNA polymerase.
Length = 540
Score = 26.7 bits (59), Expect = 2.7
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 52 LVAFVLSYSPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFG--KIISRLYP 102
L L Y L +VL+ + Y L V V+ F + +R YP
Sbjct: 417 LYPVYLKYRKLLPRVLRRNTIPDGYGDGAL---VGSVLINPFAPRRGYARRYP 466
>gnl|CDD|224971 COG2060, KdpA, K+-transporting ATPase, A chain [Inorganic ion
transport and metabolism].
Length = 560
Score = 26.4 bits (59), Expect = 3.2
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 38 MNNWVLNIGLVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPL 81
+L I L +L+ YL +V P + L P+
Sbjct: 1 AQGGLLQIALFLAVLLVLAPPLGRYLARVYLGEPTFLDPVLGPV 44
>gnl|CDD|113647 pfam04881, Adeno_GP19K, Adenovirus GP19K. This 19 kDa glycoprotein
binds the major histocompatibility (MHC) class I
antigens in the endoplasmic reticulum (ER). The ER
retention signal at the C-terminus of GP19K causes
retention of the complex in the ER, preventing lysis of
the cell by cytotoxic T lymphocytes.
Length = 139
Score = 25.2 bits (55), Expect = 6.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 CQTAYFISIVIAQCAAL-IVCKTRYNSIYQQKM 38
C A I+ ++ C L I K RY + ++KM
Sbjct: 106 CIMACLITALLVVCIHLLIKIKPRYGNEEKEKM 138
>gnl|CDD|226058 COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 234
Score = 25.4 bits (56), Expect = 6.5
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 82 PIAVLIVIYGEFGKIISRLYPNS 104
+ I I G F + R+ P
Sbjct: 108 NLFYAIKITGIFKYVHVRMVPKQ 130
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system
protein KefB; Provisional.
Length = 601
Score = 25.4 bits (56), Expect = 9.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 85 VLIVIYGEFGKIISRL 100
V+IV +G FG++I RL
Sbjct: 403 VIIVGFGRFGQVIGRL 418
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.140 0.436
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,733,287
Number of extensions: 496560
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 72
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)