RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6872
(112 letters)
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 113 bits (285), Expect = 9e-31
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 1 MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYS 60
+E TC T++FISIV+ Q A LI+CKTR NSI+QQ M N +L GL E +A LSY
Sbjct: 917 KIVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYC 976
Query: 61 PYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMA 107
P + L+ P+K +W P +++I +Y E + I R P ++
Sbjct: 977 PGTDVALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIRRSPGGWVE 1023
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 109 bits (275), Expect = 2e-29
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 1 MNLESTCQTAYFISIVIAQCAALIVCKTRYNSIYQQK-MNNWVLNIGLVFEILVAFVLSY 59
+ + TC T +FISI + Q A +++ KTR S +QQ N +L I +VF++ + L Y
Sbjct: 922 LYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCY 981
Query: 60 SPYLNKVLKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLYPNSFMA 107
P + + P++ ++WL P+P +LI +Y E K+ R P S+
Sbjct: 982 CPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWWD 1029
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 57.6 bits (140), Expect = 3e-11
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 8 QTAYFISIVIAQCAALIVCKTRYNSIYQQKM-NNWVLNIGLVFEILVAFVLSYSPYLNKV 66
T +V + + + S+ + N L + + + F++ Y L +
Sbjct: 898 MTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMI 957
Query: 67 LKTRPVKMKYWLTPLPIAVLIVIYGEFGKIISRLY 101
K + + + WL L I++ ++ E K I+R Y
Sbjct: 958 FKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 992
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 44.6 bits (106), Expect = 1e-06
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 8 QTAYFISIVIAQCAALIVCKTRYNSIYQQKMNNWVLNIGLVFEILVAFVLSYSPYLNKVL 67
A ++ + I A + V ++R S + +L I + L+A +++ +
Sbjct: 754 MGAVYLQVSIISQALIFVTRSR--SWSFVERPGALLMIAFLIAQLIATLIAVYA-NWEFA 810
Query: 68 KTRPVKMKYWLTPLPIAVLIVIYGEFGKIISR 99
K R + + +++ + K R
Sbjct: 811 KIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIR 842
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 1.9
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 58 SYSPYLNKVLKTRPV-KMKYWLTPLPIAVLIVIYGE--FGK 95
++ Y V + +P K++ L L A ++I G GK
Sbjct: 125 VFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 25.5 bits (56), Expect = 4.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 85 VLIVIYGEFGKIISRL 100
V+I +G FG+I RL
Sbjct: 7 VIIAGFGRFGQITGRL 22
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 7.1
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 26/75 (34%)
Query: 12 FISIVIAQCAALIVCKTRYNSIYQQKMN--NWVLN-------------------IGLV-- 48
I + LI ++ Q +N W+ N IG++
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 49 --FEILVAFVLSYSP 61
+ + A +L ++P
Sbjct: 247 AHYVV-TAKLLGFTP 260
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 24.6 bits (54), Expect = 8.1
Identities = 5/74 (6%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 39 NNWVLNIG-LVFEILVAFVLSYSPYLNKVLKTRPVKMKYWLTPL-----PIAVLIVIYGE 92
+ L I+ ++ ++ + +K+ + P + +++
Sbjct: 408 GTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVW 467
Query: 93 FGKIISRLYPNSFM 106
+ I ++ +
Sbjct: 468 AREYIPKIMEETHW 481
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.140 0.436
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,729,067
Number of extensions: 86988
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 15
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.5 bits)