BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6873
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 24/199 (12%)
Query: 8 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
+LK EV +D+H + L+EL++ T RGL+ K L +DGPNSL
Sbjct: 39 ELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFC 98
Query: 68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY----- 122
+F GFS LLW GA+L FLAY ++A T +E DNL+LG++L+ IVT Y
Sbjct: 99 RQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAK 158
Query: 123 ---IFRGFSALLWFGALL-----------SFLAY--LLEAETNEEKPQDNLWLGIILALT 166
I F ++ AL+ F+ L+E + + P D L II A
Sbjct: 159 SSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPAD---LRIISAHG 215
Query: 167 CIVTGSLLSVQQKYSPRTP 185
C V S L+ + + R+P
Sbjct: 216 CKVDNSSLTGESEPQTRSP 234
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
+ +LK EV +D+H + L+EL+ T RGL+ L +DGPN+L
Sbjct: 1 MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVK 60
Query: 66 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
+F GFS LLW GA+L FLAY ++A T EE DNL+LG++L+ I+T Y
Sbjct: 61 FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 120
Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
I F ++ AL+ + L+E + + P D L II A
Sbjct: 121 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 177
Query: 165 LTCIVTGSLLSVQQKYSPRTP 185
C V S L+ + + R+P
Sbjct: 178 NGCKVDNSSLTGESEPQTRSP 198
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
+ +LK EV +D+H + L+EL+ T RGL+ L +DGPN+L
Sbjct: 7 MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVK 66
Query: 66 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
+F GFS LLW GA+L FLAY ++A T EE DNL+LG++L+ I+T Y
Sbjct: 67 FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 126
Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
I F ++ AL+ + L+E + + P D L II A
Sbjct: 127 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 183
Query: 165 LTCIVTGSLLSVQQKYSPRTP 185
C V S L+ + + R+P
Sbjct: 184 NGCKVDNSSLTGESEPQTRSP 204
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 5 QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVY 64
+L ++K E++I++H + + EL T +GLS L +DGPN+L
Sbjct: 41 KLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYV 100
Query: 65 ILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI- 123
+ G L+W A + +A+ ++A + DNL+L + L +VT GY
Sbjct: 101 KFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQ 160
Query: 124 -FRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILAL 165
F+ + + F L+ A ++ + D L +G ++ +
Sbjct: 161 EFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 126 GFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSL 173
G L+W A + +A+ ++A + DNL+L + L +VTG
Sbjct: 109 GLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCF 156
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 3 VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQK 57
++ L D+KNE +D IP+EE++ L + GL+ E + R++ GPN L +K
Sbjct: 1 MSSLEDIKNET-VDLEKIPIEEVFQQLKCSRE-GLTTQEGEDRIQIFGPNKLEEK 53
>pdb|3GVZ|A Chain A, Crystal Structure Of The Protein Cv2077 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr62
pdb|3GVZ|B Chain B, Crystal Structure Of The Protein Cv2077 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr62
Length = 299
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 22 LEELYSILDTHPDRGLSELEVKRRLEKDGP-NSLPQKYRINNVYILVGY 69
LE + +LD HP LSE E R DGP NSL +R + L G+
Sbjct: 197 LERIRFLLDQHPAHTLSEFERLSRDRHDGPDNSL---WRSGREHTLAGW 242
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 100 PQDNLWLGIILALTCIVTVLVGYIFRGFSAL 130
P+ +LG++++LT VL +FRG+SAL
Sbjct: 58 PEQAQFLGLLISLTGAKQVLEIGVFRGYSAL 88
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 96 NEEKPQDNLWLGIILALTCIVTVLVGYIF---RGFSALLWFGALL 137
N K ++L II A + IV L +IF G A+LWFG +L
Sbjct: 227 NFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL 271
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of
The Serca Ca2+-Atpase
Length = 994
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 18 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQK 57
H EE + GL+ +VKR LEK G N LP +
Sbjct: 5 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAE 44
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
And Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And
Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 18 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQK 57
H EE + GL+ +VKR LEK G N LP +
Sbjct: 6 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAE 45
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence
Of Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence
Of Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound
Calcium Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound
Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound
Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State
Solved In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State
Solved In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
In The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex
Of The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex
Of The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase
Bound To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase
Bound To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 18 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQK 57
H EE + GL+ +VKR LEK G N LP +
Sbjct: 5 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAE 44
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 18 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQK 57
H EE + GL+ +VKR LEK G N LP +
Sbjct: 5 HSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAE 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,352,087
Number of Sequences: 62578
Number of extensions: 261140
Number of successful extensions: 589
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 21
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)