Query psy6873
Match_columns 207
No_of_seqs 214 out of 1608
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01523 ATPase-IID_K-Na pota 100.0 6.2E-31 1.3E-35 260.7 18.4 164 15-204 5-171 (1053)
2 TIGR01106 ATPase-IIC_X-K sodiu 100.0 3.4E-30 7.5E-35 254.7 19.8 187 5-204 5-194 (997)
3 KOG0202|consensus 100.0 1.7E-30 3.7E-35 245.0 8.1 155 16-196 3-159 (972)
4 TIGR01522 ATPase-IIA2_Ca golgi 100.0 5.3E-29 1.1E-33 243.9 18.1 164 15-204 2-170 (884)
5 TIGR01524 ATPase-IIIB_Mg magne 100.0 2.1E-28 4.5E-33 239.2 19.0 171 2-204 5-184 (867)
6 PRK10517 magnesium-transportin 100.0 5.3E-28 1.2E-32 236.9 18.9 161 17-204 49-218 (902)
7 PRK15122 magnesium-transportin 100.0 8.6E-28 1.9E-32 235.5 19.9 172 17-204 27-207 (903)
8 TIGR01517 ATPase-IIB_Ca plasma 100.0 1.7E-27 3.8E-32 234.5 19.1 171 21-204 43-219 (941)
9 KOG0203|consensus 99.9 7.5E-29 1.6E-33 233.8 5.8 181 3-196 25-207 (1019)
10 TIGR01647 ATPase-IIIA_H plasma 99.9 5.3E-26 1.2E-30 219.5 15.4 142 36-204 1-145 (755)
11 COG0474 MgtA Cation transport 99.9 2E-25 4.2E-30 219.3 15.4 168 14-204 20-193 (917)
12 KOG0204|consensus 99.9 3.1E-26 6.7E-31 216.5 9.2 178 2-197 81-265 (1034)
13 KOG0205|consensus 99.9 2.6E-25 5.6E-30 205.6 8.7 167 6-194 8-176 (942)
14 TIGR01657 P-ATPase-V P-type AT 99.9 2.7E-23 5.8E-28 206.9 16.5 144 34-205 137-284 (1054)
15 KOG0208|consensus 99.8 7.2E-18 1.6E-22 161.9 14.1 144 34-205 158-304 (1140)
16 TIGR01116 ATPase-IIA1_Ca sarco 99.8 3.5E-18 7.6E-23 168.4 12.2 123 66-204 1-126 (917)
17 PF00690 Cation_ATPase_N: Cati 99.7 1.6E-16 3.5E-21 109.8 8.0 69 17-85 1-69 (69)
18 PRK01122 potassium-transportin 99.6 4.4E-15 9.6E-20 141.9 12.8 124 68-204 29-157 (679)
19 KOG0209|consensus 99.6 8.1E-15 1.7E-19 139.2 12.5 158 21-205 149-309 (1160)
20 PRK14010 potassium-transportin 99.6 9.8E-15 2.1E-19 139.4 13.1 122 68-204 28-157 (673)
21 TIGR01497 kdpB K+-transporting 99.6 3.5E-14 7.6E-19 135.5 12.7 124 68-204 28-158 (675)
22 TIGR01512 ATPase-IB2_Cd heavy 99.5 1.1E-13 2.3E-18 129.7 11.6 90 103-205 17-108 (536)
23 smart00831 Cation_ATPase_N Cat 99.5 1.1E-13 2.5E-18 93.9 7.1 62 28-89 2-63 (64)
24 PF00122 E1-E2_ATPase: E1-E2 A 99.4 1.9E-13 4.1E-18 113.9 7.1 79 109-200 1-83 (230)
25 TIGR01525 ATPase-IB_hvy heavy 99.4 1E-12 2.2E-17 123.5 12.0 90 103-205 17-109 (556)
26 PRK11033 zntA zinc/cadmium/mer 99.4 3.3E-12 7.1E-17 123.8 12.6 90 103-205 205-296 (741)
27 TIGR01652 ATPase-Plipid phosph 99.4 5.2E-12 1.1E-16 126.6 12.6 125 49-195 1-129 (1057)
28 TIGR01511 ATPase-IB1_Cu copper 99.3 5E-11 1.1E-15 112.3 13.5 89 103-204 53-144 (562)
29 PRK10671 copA copper exporting 99.2 2.4E-10 5.2E-15 112.1 13.6 89 104-205 286-376 (834)
30 COG2217 ZntA Cation transport 99.1 9.9E-10 2.1E-14 105.7 13.6 90 103-205 173-265 (713)
31 TIGR01494 ATPase_P-type ATPase 99.0 2.3E-10 5E-15 106.1 6.0 80 112-205 4-87 (499)
32 PLN03190 aminophospholipid tra 99.0 3.5E-09 7.5E-14 107.1 12.1 125 48-195 86-214 (1178)
33 COG2216 KdpB High-affinity K+ 98.6 5.8E-08 1.3E-12 89.4 5.3 117 70-199 30-152 (681)
34 KOG0207|consensus 98.2 7.9E-06 1.7E-10 79.7 9.8 86 106-204 343-431 (951)
35 KOG0206|consensus 98.0 9.8E-06 2.1E-10 81.5 6.1 129 45-197 28-161 (1151)
36 KOG0210|consensus 97.9 4.6E-05 9.9E-10 72.8 8.7 131 44-197 74-208 (1051)
37 KOG0203|consensus 96.0 0.0031 6.7E-08 61.7 1.8 125 18-181 24-150 (1019)
38 KOG4383|consensus 86.4 1.7 3.7E-05 42.6 5.9 74 103-189 87-193 (1354)
39 PF12368 DUF3650: Protein of u 80.3 1.5 3.2E-05 24.9 1.8 15 34-48 13-27 (28)
40 PF06738 DUF1212: Protein of u 68.9 50 0.0011 26.4 8.9 25 22-49 70-94 (193)
41 PF13748 ABC_membrane_3: ABC t 61.8 50 0.0011 28.2 7.7 46 103-148 137-184 (237)
42 PF13625 Helicase_C_3: Helicas 57.0 17 0.00036 27.5 3.8 49 6-58 28-76 (129)
43 PF08006 DUF1700: Protein of u 44.1 1.6E+02 0.0034 23.4 7.8 12 34-45 38-49 (181)
44 PF15584 Imm44: Immunity prote 42.8 13 0.00028 27.1 1.0 19 171-191 14-32 (94)
45 PRK05305 phosphatidylserine de 40.7 1.3E+02 0.0029 24.6 7.0 29 170-200 80-112 (206)
46 PF03120 DNA_ligase_OB: NAD-de 40.7 15 0.00031 26.2 1.0 22 169-191 51-72 (82)
47 PRK11507 ribosome-associated p 35.5 37 0.00079 23.5 2.3 24 142-176 38-61 (70)
48 TIGR02829 spore_III_AE stage I 34.0 3.2E+02 0.007 25.0 8.8 51 37-88 60-113 (381)
49 PF09926 DUF2158: Uncharacteri 31.6 26 0.00057 22.7 1.1 12 169-182 2-13 (53)
50 COG4988 CydD ABC-type transpor 29.4 5.3E+02 0.011 24.9 11.1 33 40-72 77-109 (559)
51 PF12534 DUF3733: Leucine-rich 28.4 40 0.00086 22.9 1.5 27 47-73 8-34 (65)
52 PF01455 HupF_HypC: HupF/HypC 28.2 1.3E+02 0.0027 20.5 4.0 32 138-182 16-50 (68)
53 PRK08568 preprotein translocas 23.8 6E+02 0.013 23.7 9.3 90 26-131 356-449 (462)
54 COG5547 Small integral membran 23.3 2.4E+02 0.0051 18.8 6.7 24 104-127 29-52 (62)
55 COG1188 Ribosome-associated he 22.1 1.2E+02 0.0025 22.5 3.1 37 132-182 25-61 (100)
56 TIGR01106 ATPase-IIC_X-K sodiu 21.6 2.2E+02 0.0047 29.3 6.0 46 25-71 9-54 (997)
57 PRK04980 hypothetical protein; 21.5 88 0.0019 23.2 2.4 28 169-196 33-60 (102)
58 smart00540 LEM in nuclear memb 20.8 1.2E+02 0.0027 18.8 2.6 23 35-57 4-26 (44)
59 PF06645 SPC12: Microsomal sig 20.8 3E+02 0.0064 19.0 6.3 19 74-92 13-31 (76)
60 PRK15078 polysaccharide export 20.7 1.1E+02 0.0024 27.7 3.4 38 139-176 211-249 (379)
61 smart00306 HintN Hint (Hedgeho 20.7 1.1E+02 0.0023 21.0 2.7 25 141-176 74-98 (100)
No 1
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.97 E-value=6.2e-31 Score=260.68 Aligned_cols=164 Identities=19% Similarity=0.213 Sum_probs=152.3
Q ss_pred ccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q psy6873 15 IDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAE 94 (207)
Q Consensus 15 ~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~ 94 (207)
.+||..+.+++.+.|+++..+|||++|+++|+++||+|+++.++++++|.+++++|++|+.++|++++++|++++
T Consensus 5 ~~~~~~~~~~v~~~l~t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~----- 79 (1053)
T TIGR01523 5 NAYFSDIADEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMH----- 79 (1053)
T ss_pred CchhhCCHHHHHHHhCcCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh-----
Confidence 468999999999999999778999999999999999999999988999999999999999999999999999874
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeecc
Q psy6873 95 TNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGS 172 (207)
Q Consensus 95 ~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GD 172 (207)
+|.++++|+++++++++++++||++++++ +|+++.+.+++|+|||++++|+++|| ||||
T Consensus 80 --------~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eL-----------VpGD 140 (1053)
T TIGR01523 80 --------DWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDL-----------VPGD 140 (1053)
T ss_pred --------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhC-----------CCCC
Confidence 59999999999999999999999999999 89999999999999999999999999 9999
Q ss_pred EEEEeccCCCCcccceeeeeeccc-CCCCCCCC
Q psy6873 173 LLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSG 204 (207)
Q Consensus 173 iv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~ 204 (207)
+|.+ ++||+||||||++++.++ ..+..+.|
T Consensus 141 Iv~L--~~Gd~VPAD~rLi~~~~L~VDES~LTG 171 (1053)
T TIGR01523 141 ICLL--KTGDTIPADLRLIETKNFDTDEALLTG 171 (1053)
T ss_pred EEEE--CCCCEeeccEEEEEeCceEEEchhhcC
Confidence 9999 999999999999998643 34444444
No 2
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.97 E-value=3.4e-30 Score=254.72 Aligned_cols=187 Identities=32% Similarity=0.489 Sum_probs=163.9
Q ss_pred HHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHH
Q psy6873 5 QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALL 84 (207)
Q Consensus 5 ~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~ 84 (207)
+....++...++||..+.+++.+.|+++..+|||.+|+++|+++||+|+++.++++++|++|++++++|+.++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l 84 (997)
T TIGR01106 5 DLDELKKEVEMDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAIL 84 (997)
T ss_pred hhhhhhhhccCCchhCCHHHHHHHhCcCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHH
Confidence 34445566778999999999999999998789999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhh
Q psy6873 85 SFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGII 162 (207)
Q Consensus 85 s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~ 162 (207)
+++++++....+......+|+++++++++++++++++++|++++++. +++++.+.+++|+|||+++++++++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~l----- 159 (997)
T TIGR01106 85 CFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQV----- 159 (997)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHC-----
Confidence 98877654322222233579999999999999999999999999998 88899999999999999999999999
Q ss_pred heeeeeeeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873 163 LALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG 204 (207)
Q Consensus 163 ~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~ 204 (207)
||||+|.+ ++||+|||||++++++. ...+..+.|
T Consensus 160 ------v~GDiv~l--~~Gd~IPaD~~il~~~~l~VdeS~LTG 194 (997)
T TIGR01106 160 ------VVGDLVEV--KGGDRIPADLRIISAQGCKVDNSSLTG 194 (997)
T ss_pred ------CCCCEEEE--CCCCEEeeeEEEEEccCcEEEccccCC
Confidence 99999999 99999999999999975 455555554
No 3
>KOG0202|consensus
Probab=99.96 E-value=1.7e-30 Score=245.00 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=148.3
Q ss_pred cccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6873 16 DEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAET 95 (207)
Q Consensus 16 ~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~ 95 (207)
+.|..+++|.+.+|.++.++|||.+|+.+|+++||.|+++.+..+++|+++++||.+++..+|+.+|++||.+.
T Consensus 3 ~~~~~~v~e~~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~------ 76 (972)
T KOG0202|consen 3 EAHAKSVSEVLAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLA------ 76 (972)
T ss_pred chhcCcHHHHHHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHH------
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccE
Q psy6873 96 NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSL 173 (207)
Q Consensus 96 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDi 173 (207)
+|.++.+|.+++++++.+++|||++++++ +|+++.|+.++|+|+|+.+.+++++| ||||+
T Consensus 77 -------~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~gk~~~i~A~eL-----------VPGDi 138 (972)
T KOG0202|consen 77 -------DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLRSGKLQHILAREL-----------VPGDI 138 (972)
T ss_pred -------hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEecCcccceehhcc-----------CCCCE
Confidence 57789999999999999999999999999 99999999999999999999999999 99999
Q ss_pred EEEeccCCCCcccceeeeeeccc
Q psy6873 174 LSVQQKYSPRTPWDLLNAGVRYI 196 (207)
Q Consensus 174 v~l~~~~Gd~iPaD~~l~~~~~~ 196 (207)
|.+ +-||+||||.|+++..++
T Consensus 139 V~l--~vGDkVPADlRl~e~~sl 159 (972)
T KOG0202|consen 139 VEL--KVGDKIPADLRLIEAKSL 159 (972)
T ss_pred EEE--ecCCccccceeEEeeeee
Confidence 999 999999999999998874
No 4
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.96 E-value=5.3e-29 Score=243.88 Aligned_cols=164 Identities=20% Similarity=0.151 Sum_probs=150.8
Q ss_pred ccccCCCHHHHHHHhCCCCCCCCC-HHHHHHHHHhcCCCCCCCcccCcHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhh
Q psy6873 15 IDEHLIPLEELYSILDTHPDRGLS-ELEVKRRLEKDGPNSLPQKYRINNVYILVGYI-FRGFSALLWFGALLSFLAYLLE 92 (207)
Q Consensus 15 ~~~~~~~~~~l~~~l~t~~~~GLs-~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~-~~p~~~~Ll~~a~~s~~~~~~~ 92 (207)
.+||.++++++.+.|+++.++||| .+|+++|+++||+|+++.++++++|+.+++++ ++|+.++|++++++|++++
T Consensus 2 ~~~~~~~~~~v~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g--- 78 (884)
T TIGR01522 2 KQYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMG--- 78 (884)
T ss_pred cchhhCCHHHHHHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHc---
Confidence 468999999999999999888999 89999999999999999998899999999999 8999999999999998774
Q ss_pred hhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeee
Q psy6873 93 AETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVT 170 (207)
Q Consensus 93 ~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~ 170 (207)
.|.+++++++++++++.++++||+++++. +|+++.+.+++|+|||++++|++++| ||
T Consensus 79 ----------~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eL-----------v~ 137 (884)
T TIGR01522 79 ----------NIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIREGKLEHVLASTL-----------VP 137 (884)
T ss_pred ----------chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHC-----------cc
Confidence 58899999999999999999999999998 88999999999999999999999999 99
Q ss_pred ccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873 171 GSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG 204 (207)
Q Consensus 171 GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~ 204 (207)
||+|.+ ++||+|||||+++++++ ...+..+.|
T Consensus 138 GDiv~l--~~Gd~IPaDg~ii~g~~l~VDES~LTG 170 (884)
T TIGR01522 138 GDLVCL--SVGDRVPADLRIVEAVDLSIDESNLTG 170 (884)
T ss_pred CCEEEe--cCCCEEeeeEEEEEcCceEEEcccccC
Confidence 999999 99999999999999963 455555444
No 5
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.96 E-value=2.1e-28 Score=239.16 Aligned_cols=171 Identities=25% Similarity=0.301 Sum_probs=153.6
Q ss_pred ChhHHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHH
Q psy6873 2 DVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFG 81 (207)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~ 81 (207)
||.++.++.+. |..+.+++.+.++++. +|||++|+.+|+++||+|+++.++++++|+.++++|++|+.++|+++
T Consensus 5 ~~~~~~~~~~~-----~~~~~~~~~~~l~~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~ 78 (867)
T TIGR01524 5 VKKQGNNLLKE-----SQMGKETLLRKLGVHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAML 78 (867)
T ss_pred CchHHHHHHHH-----HhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHH
Confidence 45555555544 5677999999999985 79999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEE------CCeEEEee
Q psy6873 82 ALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLE------AETNEEKP 153 (207)
Q Consensus 82 a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR------~g~~~~i~ 153 (207)
++++++.+ +|.++++++++++++++++++||++++++ +|+++.+..++|+| ||++++++
T Consensus 79 a~ls~~~~-------------~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~ 145 (867)
T TIGR01524 79 MGVSYLTD-------------DLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVP 145 (867)
T ss_pred HHHHHHHh-------------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCeEEEEE
Confidence 99998763 68999999999999999999999999988 89999999999999 99999999
Q ss_pred CcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873 154 QDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG 204 (207)
Q Consensus 154 ~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~ 204 (207)
+++| ||||+|.+ ++||+|||||+++++++ ...+-.+.|
T Consensus 146 ~~eL-----------v~GDiV~l--~~Gd~VPaDg~li~g~~l~VDES~LTG 184 (867)
T TIGR01524 146 IDAL-----------VPGDLIEL--AAGDIIPADARVISARDLFINQSALTG 184 (867)
T ss_pred hhcC-----------CCCCEEEE--CCCCEEcccEEEEecCceEEEcccccC
Confidence 9999 99999999 99999999999999986 456666655
No 6
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.96 E-value=5.3e-28 Score=236.87 Aligned_cols=161 Identities=27% Similarity=0.344 Sum_probs=149.0
Q ss_pred ccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy6873 17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETN 96 (207)
Q Consensus 17 ~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~ 96 (207)
.+..+.+++.+.++++. +|||++|+++|+++||+|+++.++++++|+.++++|++|+.++|+++++++++++
T Consensus 49 ~~~~~~~~v~~~l~~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~------- 120 (902)
T PRK10517 49 AAVMPEEELWKTFDTHP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATE------- 120 (902)
T ss_pred HHcCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc-------
Confidence 45677999999999996 7999999999999999999999998999999999999999999999999998763
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEEC------CeEEEeeCcchhhhhhheeeee
Q psy6873 97 EEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEA------ETNEEKPQDNLWLGIILALTCI 168 (207)
Q Consensus 97 ~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~------g~~~~i~~~~L~~~~~~~~~~~ 168 (207)
+|.++++++++++++.+++++||+|+++. +|+++.+.+++|+|| |++++|++++|
T Consensus 121 ------~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eL----------- 183 (902)
T PRK10517 121 ------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQL----------- 183 (902)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhC-----------
Confidence 58899999999999999999999999998 899999999999999 67899999999
Q ss_pred eeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873 169 VTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG 204 (207)
Q Consensus 169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~ 204 (207)
||||+|.+ ++||+|||||+++++++ ...+..+.|
T Consensus 184 vpGDiV~l--~~Gd~IPaDg~li~g~~l~VDES~LTG 218 (902)
T PRK10517 184 VPGDIIKL--AAGDMIPADLRILQARDLFVAQASLTG 218 (902)
T ss_pred CCCCEEEE--CCCCEEeeeEEEEEcCceEEEecCcCC
Confidence 99999999 99999999999999986 567777666
No 7
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.96 E-value=8.6e-28 Score=235.54 Aligned_cols=172 Identities=23% Similarity=0.232 Sum_probs=153.9
Q ss_pred ccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy6873 17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETN 96 (207)
Q Consensus 17 ~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~ 96 (207)
.|..+.+++.+.|+++. +|||++|+++|+++||+|+++.++++++|..|+++|++|+.++|++++++|++++++....
T Consensus 27 ~~~~~~~~v~~~l~~~~-~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~- 104 (903)
T PRK15122 27 EAANSLEETLANLNTHR-QGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLR- 104 (903)
T ss_pred HHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 68899999999999994 8999999999999999999999998999999999999999999999999999886543211
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECC------eEEEeeCcchhhhhhheeeee
Q psy6873 97 EEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAE------TNEEKPQDNLWLGIILALTCI 168 (207)
Q Consensus 97 ~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g------~~~~i~~~~L~~~~~~~~~~~ 168 (207)
++...+|.++++++++++++++++++||++++++ +|+++.+.+++|+||| ++++|++++|
T Consensus 105 -~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eL----------- 172 (903)
T PRK15122 105 -RGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMREL----------- 172 (903)
T ss_pred -CCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHC-----------
Confidence 1112468999999999999999999999999998 8999999999999994 7899999999
Q ss_pred eeccEEEEeccCCCCcccceeeeeeccc-CCCCCCCC
Q psy6873 169 VTGSLLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSG 204 (207)
Q Consensus 169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~ 204 (207)
||||+|.+ ++||+|||||++++++++ ..+-.+.|
T Consensus 173 v~GDiV~l--~~Gd~IPaDg~li~g~~l~VDES~LTG 207 (903)
T PRK15122 173 VPGDIVHL--SAGDMIPADVRLIESRDLFISQAVLTG 207 (903)
T ss_pred CCCCEEEE--CCCCEEeeeEEEEEcCceEEEccccCC
Confidence 99999999 999999999999999874 66666666
No 8
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.95 E-value=1.7e-27 Score=234.50 Aligned_cols=171 Identities=18% Similarity=0.166 Sum_probs=148.9
Q ss_pred CHHHHHHHhCCCCCCCCC--HHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy6873 21 PLEELYSILDTHPDRGLS--ELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEE 98 (207)
Q Consensus 21 ~~~~l~~~l~t~~~~GLs--~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~ 98 (207)
+.+++.+.|+++.++||| .+|+++|+++||+|+++.++++++|++++++|++|+.++|++++++|++++.........
T Consensus 43 ~~~~~~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~ 122 (941)
T TIGR01517 43 GAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKA 122 (941)
T ss_pred CHHHHHHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccC
Confidence 689999999999888999 999999999999999999998999999999999999999999999999876432111112
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhc-CCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEE
Q psy6873 99 KPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGAL-LSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLS 175 (207)
Q Consensus 99 ~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~-~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~ 175 (207)
.+..+|+++++++++++++.++++++++++++. ++++. .+..++|+|||+++++++++| ||||+|.
T Consensus 123 ~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~L-----------v~GDiV~ 191 (941)
T TIGR01517 123 DTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDI-----------VVGDIVS 191 (941)
T ss_pred ccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHC-----------CCCCEEE
Confidence 233579999999999999999999999999998 77654 477899999999999999999 9999999
Q ss_pred EeccCCCCcccceeeeee-cccCCCCCCCC
Q psy6873 176 VQQKYSPRTPWDLLNAGV-RYIPSRYPKSG 204 (207)
Q Consensus 176 l~~~~Gd~iPaD~~l~~~-~~~~~~~~~~~ 204 (207)
+ ++||+|||||+++++ +....+..+.|
T Consensus 192 l--~~Gd~IPaD~~li~g~~l~VdES~LTG 219 (941)
T TIGR01517 192 L--STGDVVPADGVFISGLSLEIDESSITG 219 (941)
T ss_pred E--CCCCEecccEEEEEcCcEEEEecccCC
Confidence 9 999999999999999 55666665555
No 9
>KOG0203|consensus
Probab=99.95 E-value=7.5e-29 Score=233.81 Aligned_cols=181 Identities=34% Similarity=0.526 Sum_probs=173.8
Q ss_pred hhHHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHH
Q psy6873 3 VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGA 82 (207)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a 82 (207)
++++++++||.+++.|+++.+|++++|.++..+|||.+++.+++++.|+|.+++|+..+-|.+|.+++++.+.+++|+++
T Consensus 25 ~~~l~~~k~e~~~~~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a 104 (1019)
T KOG0203|consen 25 KKELDDLKKEVSMDDHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGA 104 (1019)
T ss_pred hhhHHHHhhheeeccccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhh
Q psy6873 83 LLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLG 160 (207)
Q Consensus 83 ~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~ 160 (207)
++||+.|++++.+.++++.++++.|+++..+++++.+++|+|+.++.+. ++++++|..+.|+|||+...+.+++|
T Consensus 105 ~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eel--- 181 (1019)
T KOG0203|consen 105 ILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEEL--- 181 (1019)
T ss_pred HHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeeecceeEEechhhc---
Confidence 9999999998877777888999999999999999999999999999998 89999999999999999999999999
Q ss_pred hhheeeeeeeccEEEEeccCCCCcccceeeeeeccc
Q psy6873 161 IILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYI 196 (207)
Q Consensus 161 ~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~ 196 (207)
|+||++.+ +.||+||||.|++++...
T Consensus 182 --------VvGD~v~v--k~GdrVPADiRiis~~g~ 207 (1019)
T KOG0203|consen 182 --------VVGDLVEV--KGGDRVPADIRIISATGC 207 (1019)
T ss_pred --------ccccceee--ccCCcccceeEEEEecce
Confidence 99999999 999999999999998754
No 10
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.94 E-value=5.3e-26 Score=219.55 Aligned_cols=142 Identities=23% Similarity=0.282 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHH
Q psy6873 36 GLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCI 115 (207)
Q Consensus 36 GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~ 115 (207)
|||.+|+++|+++||+|+++.++ ++.|..|+++|++|+.++|+++++++++++ +|.++++++++++
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~~~-~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~-------------~~~~~~~i~~~~~ 66 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPEKK-VSPLLKFLGFFWNPLSWVMEAAAIIAIALE-------------NWVDFVIILGLLL 66 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCCCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhhc-------------chhhhhhhhhhhH
Confidence 89999999999999999999855 778999999999999999999999998874 5899999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeee
Q psy6873 116 VTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGV 193 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~ 193 (207)
+++.++++||+++++. +|+++.+.+++|+|||+++++++++| ||||+|.+ ++||+|||||+++++
T Consensus 67 i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~L-----------v~GDiV~l--~~Gd~IPaDg~vi~g 133 (755)
T TIGR01647 67 LNATIGFIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASEL-----------VPGDVVRL--KIGDIVPADCRLFEG 133 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhC-----------cCCCEEEE--CCCCEEeceEEEEec
Confidence 9999999999999998 88899999999999999999999999 99999999 999999999999999
Q ss_pred c-ccCCCCCCCC
Q psy6873 194 R-YIPSRYPKSG 204 (207)
Q Consensus 194 ~-~~~~~~~~~~ 204 (207)
+ ....+-.+.|
T Consensus 134 ~~~~VDeS~LTG 145 (755)
T TIGR01647 134 DYIQVDQAALTG 145 (755)
T ss_pred CceEEEcccccC
Confidence 8 5666666665
No 11
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2e-25 Score=219.25 Aligned_cols=168 Identities=27% Similarity=0.279 Sum_probs=151.3
Q ss_pred CccccCCCHH--HHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q psy6873 14 DIDEHLIPLE--ELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLL 91 (207)
Q Consensus 14 ~~~~~~~~~~--~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~ 91 (207)
.+.+|..+.+ ++...+.++..+||+.+|+.+|++.||.|+++..+.+++|..|+.+|++|+..+|+++++++++++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~ 99 (917)
T COG0474 20 SETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDW 99 (917)
T ss_pred cccccccccchhhHHHhhcCCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567888888 99999999888999999999999999999999999899999999999999999999999999988632
Q ss_pred hhhhcCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeee
Q psy6873 92 EAETNEEKPQDNL-WLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCI 168 (207)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~ 168 (207)
. .. .++.+++++++++++++++||+++++. +++++.+.+++|+|||+++++++++|
T Consensus 100 ~----------~~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eL----------- 158 (917)
T COG0474 100 V----------DAGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASEL----------- 158 (917)
T ss_pred c----------ccCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHC-----------
Confidence 1 01 566788899999999999999999999 89999999999999999999999999
Q ss_pred eeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873 169 VTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG 204 (207)
Q Consensus 169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~ 204 (207)
||||+|.+ ++||+||||+|++++++ ...+-.+.|
T Consensus 159 VpGDiV~l--~~gd~vPAD~rLl~~~~l~VdEs~LTG 193 (917)
T COG0474 159 VPGDIVLL--EAGDVVPADLRLLESSDLEVDESALTG 193 (917)
T ss_pred CCCcEEEE--CCCCccccceEEEEecCceEEcccccC
Confidence 99999999 99999999999999998 555555555
No 12
>KOG0204|consensus
Probab=99.93 E-value=3.1e-26 Score=216.45 Aligned_cols=178 Identities=19% Similarity=0.194 Sum_probs=154.4
Q ss_pred ChhHHhhhccccCcc-ccCCC-HHHHHHHhCCCCCCCCCH--HHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHH
Q psy6873 2 DVAQLRDLKNEVDID-EHLIP-LEELYSILDTHPDRGLSE--LEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSAL 77 (207)
Q Consensus 2 ~~~~l~~~~~~~~~~-~~~~~-~~~l~~~l~t~~~~GLs~--~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~ 77 (207)
+.++|.++.++++.. .+.++ ++++++.|+||+..||+. +|+.+|++.||.|.+|++++++||++.|+++++...++
T Consensus 81 ~~e~l~~i~~~~~~~~L~~~gGv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiI 160 (1034)
T KOG0204|consen 81 GAEELVKIVKEHDLKALNAYGGVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLII 160 (1034)
T ss_pred CHHHHHHHhhccchhhhhhccCHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHH
Confidence 567888888888766 45544 999999999999999986 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh-cCCCeEEEEECCeEEEeeC
Q psy6873 78 LWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGA-LLSFLAYLLEAETNEEKPQ 154 (207)
Q Consensus 78 Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~-~~~~~~~ViR~g~~~~i~~ 154 (207)
|.++|++|+.++++.+ +.+..|++|+.|++.+++.++++...+++.+++ .|.+ .......|+|+|+.++++.
T Consensus 161 L~vaAvvSl~lgi~~~-----g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~~ViR~G~r~~isI 235 (1034)
T KOG0204|consen 161 LMVAAVVSLGLGIYTP-----GIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKFQVIRGGRRQQISI 235 (1034)
T ss_pred HHHHHHHHHhhhhccC-----CCCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEEEEEECCEEEEEEE
Confidence 9999999998876642 223579999999998877777788888887777 5543 3346789999999999999
Q ss_pred cchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccC
Q psy6873 155 DNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIP 197 (207)
Q Consensus 155 ~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~ 197 (207)
.|| |+|||+.+ +.||.+||||+++++.++.
T Consensus 236 ~di-----------VVGDIv~l--k~GDqvPADGvli~gn~L~ 265 (1034)
T KOG0204|consen 236 YDL-----------VVGDIVQL--KIGDQVPADGVLIQGNSLK 265 (1034)
T ss_pred eee-----------eeccEEEe--ecCCccccceEEEecccee
Confidence 999 99999999 9999999999999997663
No 13
>KOG0205|consensus
Probab=99.92 E-value=2.6e-25 Score=205.62 Aligned_cols=167 Identities=23% Similarity=0.254 Sum_probs=147.8
Q ss_pred HhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6873 6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLS 85 (207)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s 85 (207)
+++.++| ..+..+.+.+++.++|.++. .|||++|+++|++.||+|++..++ .+.+.+|+.-+.+|+.+++-.+|+..
T Consensus 8 ~~di~~E-~vdl~~~p~eeVfeeL~~t~-~GLt~~E~~eRlk~fG~NkleEkk-en~~lKFl~Fm~~PlswVMEaAAimA 84 (942)
T KOG0205|consen 8 LEDIKKE-QVDLEAIPIEEVFEELLCTR-EGLTSDEVEERLKIFGPNKLEEKK-ESKFLKFLGFMWNPLSWVMEAAAIMA 84 (942)
T ss_pred hhhhhhh-ccccccCchhhhHHHHhcCC-CCCchHHHHHHHHhhCchhhhhhh-hhHHHHHHHHHhchHHHHHHHHHHHH
Confidence 4555555 45577889999999999884 699999999999999999999766 88899999999999999888888776
Q ss_pred HHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhh
Q psy6873 86 FLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIIL 163 (207)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~ 163 (207)
..+. |++....+|.+...||+.+++|+.++|++|+++.+. +|++-+..+++|+|||+|.++++++|
T Consensus 85 ~~La------ng~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlRDGkw~E~eAs~l------ 152 (942)
T KOG0205|consen 85 IGLA------NGGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGKWSEQEASIL------ 152 (942)
T ss_pred HHHh------cCCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEeecCeeeeeecccc------
Confidence 5542 333333579999999999999999999999999998 89999999999999999999999999
Q ss_pred eeeeeeeccEEEEeccCCCCcccceeeeeec
Q psy6873 164 ALTCIVTGSLLSVQQKYSPRTPWDLLNAGVR 194 (207)
Q Consensus 164 ~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~ 194 (207)
|||||+.+ +.||+||||+|+++++
T Consensus 153 -----VPGDIlsi--k~GdIiPaDaRLl~gD 176 (942)
T KOG0205|consen 153 -----VPGDILSI--KLGDIIPADARLLEGD 176 (942)
T ss_pred -----ccCceeee--ccCCEecCccceecCC
Confidence 99999999 9999999999999998
No 14
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.90 E-value=2.7e-23 Score=206.86 Aligned_cols=144 Identities=14% Similarity=0.172 Sum_probs=127.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHH
Q psy6873 34 DRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALT 113 (207)
Q Consensus 34 ~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v 113 (207)
.+|||.+|+.+|+++||+|+++.+. +++|+++++++++||+++++++++++++. ++|+++++++++
T Consensus 137 ~~GLs~~e~~~r~~~yG~N~i~~~~-~s~~~ll~~~~~~p~~i~~i~~~~l~~~~-------------~~~~~~~~i~~i 202 (1054)
T TIGR01657 137 SNGLTTGDIAQRKAKYGKNEIEIPV-PSFLELLKEEVLHPFYVFQVFSVILWLLD-------------EYYYYSLCIVFM 202 (1054)
T ss_pred ccCCCHHHHHHHHHhcCCCeeecCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhh-------------hhHHHHHHHHHH
Confidence 4799999999999999999999876 89999999999999998888776555432 368999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEecc--CCCCccccee
Q psy6873 114 CIVTVLVGYIFRGFSALLWFGAL--LSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQK--YSPRTPWDLL 189 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~--~Gd~iPaD~~ 189 (207)
++++..+++++++++.+. ++++ .+..++|+|||++++++++|| ||||+|.+ + +|++|||||+
T Consensus 203 ~~~~~~~~~~~~~k~~~~-L~~~~~~~~~v~V~Rdg~~~~I~s~eL-----------vpGDiv~l--~~~~g~~iPaD~~ 268 (1054)
T TIGR01657 203 SSTSISLSVYQIRKQMQR-LRDMVHKPQSVIVIRNGKWVTIASDEL-----------VPGDIVSI--PRPEEKTMPCDSV 268 (1054)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcCCeeEEEEECCEEEEEEcccC-----------CCCCEEEE--ecCCCCEecceEE
Confidence 999999999999998776 3333 467899999999999999999 99999999 8 9999999999
Q ss_pred eeeecccCCCCCCCCC
Q psy6873 190 NAGVRYIPSRYPKSGA 205 (207)
Q Consensus 190 l~~~~~~~~~~~~~~~ 205 (207)
+++|+....+.++.|-
T Consensus 269 ll~g~~~VdES~LTGE 284 (1054)
T TIGR01657 269 LLSGSCIVNESMLTGE 284 (1054)
T ss_pred EEeCcEEEecccccCC
Confidence 9999998888888774
No 15
>KOG0208|consensus
Probab=99.76 E-value=7.2e-18 Score=161.91 Aligned_cols=144 Identities=16% Similarity=0.192 Sum_probs=122.8
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHH
Q psy6873 34 DRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALT 113 (207)
Q Consensus 34 ~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v 113 (207)
.+||+..++..|+..||+|.+..+. ++.+++++++..+||+....+ |.++|+.. +++++|..|.++
T Consensus 158 ~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfYlFQ~f----Sv~lW~~d---------~Y~~YA~cI~ii 223 (1140)
T KOG0208|consen 158 SNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFYLFQAF----SVALWLAD---------SYYYYAFCIVII 223 (1140)
T ss_pred cCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHHHHHhH----Hhhhhhcc---------cchhhhhHHHHH
Confidence 5899999999999999999999988 999999999999999877764 44555433 467888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC--CeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccC-CCCcccceee
Q psy6873 114 CIVTVLVGYIFRGFSALLWFGALLS--FLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKY-SPRTPWDLLN 190 (207)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~-Gd~iPaD~~l 190 (207)
.+.+.+.+.++.++.+. .+++|.. ..++|+|+|.+++|+++|| ||||++++ .+ |-..|||+++
T Consensus 224 sv~Si~~sv~e~r~qs~-rlr~mv~~~~~V~V~R~g~~~ti~S~eL-----------VPGDil~i--~~~~~~~PcDa~L 289 (1140)
T KOG0208|consen 224 SVYSIVLSVYETRKQSI-RLRSMVKFTCPVTVIRDGFWETVDSSEL-----------VPGDILYI--PPPGKIMPCDALL 289 (1140)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCceEEEEECCEEEEEecccc-----------ccccEEEE--CCCCeEeecceEE
Confidence 88888888887665555 4666554 4689999999999999999 99999999 44 8999999999
Q ss_pred eeecccCCCCCCCCC
Q psy6873 191 AGVRYIPSRYPKSGA 205 (207)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (207)
++|+.+.++-|+.|.
T Consensus 290 i~g~civNEsmLTGE 304 (1140)
T KOG0208|consen 290 ISGDCIVNESMLTGE 304 (1140)
T ss_pred EeCcEEeecccccCC
Confidence 999999999999884
No 16
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.76 E-value=3.5e-18 Score=168.38 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=107.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEE
Q psy6873 66 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYL 143 (207)
Q Consensus 66 ~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~V 143 (207)
++++|++|+.++|++++++|+++++... +.....+|.++++|++++++++.++++||+++++. +|+++.+.+++|
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~---~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~V 77 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEE---GEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKV 77 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccc---cccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE
Confidence 4689999999999999999998864421 12223579999999999999999999999999998 888999999999
Q ss_pred EECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873 144 LEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG 204 (207)
Q Consensus 144 iR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~ 204 (207)
+|||+++++++++| ||||+|.+ ++||+|||||+++++++ ...+..+.|
T Consensus 78 iRdg~~~~I~~~~L-----------v~GDiv~l--~~Gd~IPaD~~ll~~~~l~VdeS~LTG 126 (917)
T TIGR01116 78 LRDGRWSVIKAKDL-----------VPGDIVEL--AVGDKVPADIRVLSLKTLRVDQSILTG 126 (917)
T ss_pred EECCEEEEEEHHHC-----------CCCCEEEE--CCCCEeeccEEEEEecceEEEcccccC
Confidence 99999999999999 99999999 99999999999999963 455665555
No 17
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=99.68 E-value=1.6e-16 Score=109.79 Aligned_cols=69 Identities=35% Similarity=0.458 Sum_probs=65.7
Q ss_pred ccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6873 17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLS 85 (207)
Q Consensus 17 ~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s 85 (207)
||..+++++++.|+++..+|||.+|+.+|+++||+|.++.++++++|+.++++|.+||.++|++++++|
T Consensus 1 w~~~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 1 WHQLSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp -TTSSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 799999999999999989999999999999999999999999999999999999999999999999886
No 18
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.61 E-value=4.4e-15 Score=141.86 Aligned_cols=124 Identities=15% Similarity=0.046 Sum_probs=102.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhhh-cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCC-eEEE
Q psy6873 68 GYIFRGFSALLWFGALLSFLAYLLEAET-NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSF-LAYL 143 (207)
Q Consensus 68 ~~~~~p~~~~Ll~~a~~s~~~~~~~~~~-~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~-~~~V 143 (207)
.+++||+++++++++++|++++.+.... ++.+....|..++++++.++++.+++.++++|++++ +|+++.+. .++|
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v 108 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK 108 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 5778999999999999999887543211 111223567778888888888888889999999988 88998885 7999
Q ss_pred EECCe-EEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873 144 LEAET-NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 144 iR~g~-~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
+|+|+ ++++++++| ++||+|.+ ++||+|||||+++++.....+-.+.|
T Consensus 109 ir~g~~~~~V~~~eL-----------~~GDiV~v--~~Gd~IPaDG~vieG~a~VDESaLTG 157 (679)
T PRK01122 109 LREPGAAEEVPATEL-----------RKGDIVLV--EAGEIIPADGEVIEGVASVDESAITG 157 (679)
T ss_pred EECCCEEEEEEHHHc-----------CCCCEEEE--cCCCEEEEEEEEEEccEEEEcccccC
Confidence 99987 899999999 99999999 99999999999999987666666655
No 19
>KOG0209|consensus
Probab=99.60 E-value=8.1e-15 Score=139.24 Aligned_cols=158 Identities=15% Similarity=0.107 Sum_probs=124.9
Q ss_pred CHHHHHHHhCCCCCCCCCH-HHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCC
Q psy6873 21 PLEELYSILDTHPDRGLSE-LEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEK 99 (207)
Q Consensus 21 ~~~~l~~~l~t~~~~GLs~-~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~ 99 (207)
+.++..-.+..+ +|+.. +++..-.++||.|....+. ++|.++|.++...||..++.+ |..+|.++
T Consensus 149 p~~~~~g~~~k~--~G~~~~~~i~~a~~~~G~N~fdi~v-PtF~eLFkE~A~aPfFVFQVF----cvgLWCLD------- 214 (1160)
T KOG0209|consen 149 PTDEPFGYFQKS--TGHEEESEIKLAKHKYGKNKFDIVV-PTFSELFKEHAVAPFFVFQVF----CVGLWCLD------- 214 (1160)
T ss_pred CcCCcchhhhhc--cCcchHHHHHHHHHHhcCCccccCC-ccHHHHHHHhccCceeeHhHH----hHHHHHhH-------
Confidence 355666666655 57763 4555556679999999988 899999999999998766654 44444443
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEec
Q psy6873 100 PQDNLWLGIILALTCIVTVLVGYIFRGFSALL-WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQ 178 (207)
Q Consensus 100 ~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~ 178 (207)
++||++++-++|++.-..--.+|+.++... +-....+..+.|+|+++|+.+.++|| +|||+|.+..
T Consensus 215 --eyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~kpy~I~v~R~kKW~~l~seeL-----------lPgDvVSI~r 281 (1160)
T KOG0209|consen 215 --EYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGNKPYTINVYRNKKWVKLMSEEL-----------LPGDVVSIGR 281 (1160)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCcceecccccc-----------CCCceEEecc
Confidence 579999999999887777677777776665 55555678899999999999999999 9999999943
Q ss_pred cC-CCCcccceeeeeecccCCCCCCCCC
Q psy6873 179 KY-SPRTPWDLLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 179 ~~-Gd~iPaD~~l~~~~~~~~~~~~~~~ 205 (207)
.+ ...||||.+++.|+.+.++.|++|.
T Consensus 282 ~~ed~~vPCDllLL~GsciVnEaMLtGE 309 (1160)
T KOG0209|consen 282 GAEDSHVPCDLLLLRGSCIVNEAMLTGE 309 (1160)
T ss_pred CcccCcCCceEEEEecceeechhhhcCC
Confidence 22 3579999999999999999999995
No 20
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.60 E-value=9.8e-15 Score=139.39 Aligned_cols=122 Identities=11% Similarity=0.018 Sum_probs=95.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH----HHHHHHH--HHhhcCCC-e
Q psy6873 68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIF----RGFSALL--WFGALLSF-L 140 (207)
Q Consensus 68 ~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~----~~~~~~~--~l~~~~~~-~ 140 (207)
..+++|++++++++++++++++.+....++ . ....+++++++++++++.+++.++ |+|++++ +|+++.+. +
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~~-~-~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~ 105 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPDLFHQ-E-SVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMK 105 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhhhccc-c-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence 456789999999999999988654211111 1 113467888888888888888888 5777776 88888876 7
Q ss_pred EE-EEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873 141 AY-LLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 141 ~~-ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
++ |.|||+++++++++| +|||+|.+ ++||+|||||++++++....+-.+.|
T Consensus 106 a~~v~rdg~~~~I~a~eL-----------v~GDiV~v--~~Gd~IPaDG~vieG~~~VDESaLTG 157 (673)
T PRK14010 106 ARRIKQDGSYEMIDASDL-----------KKGHIVRV--ATGEQIPNDGKVIKGLATVDESAITG 157 (673)
T ss_pred EEEEEeCCEEEEEEHHHc-----------CCCCEEEE--CCCCcccCCeEEEEcceEEecchhcC
Confidence 76 789999999999999 99999999 99999999999999987666555554
No 21
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.55 E-value=3.5e-14 Score=135.55 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=95.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCC-eE
Q psy6873 68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWL---GIILALTCIVTVLVGYIFRGFSALL--WFGALLSF-LA 141 (207)
Q Consensus 68 ~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~---~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~-~~ 141 (207)
.+|+||+++++++++++|++++......+.+.....|++ ++++++.++++.+++.++++|++++ +|+++.+. .+
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a 107 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFA 107 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence 467899999999999999988753211111001112444 4556666777888888999999988 88888876 48
Q ss_pred EEEE-CCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873 142 YLLE-AETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 142 ~ViR-~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
+|+| ||+++++++++| ++||+|.+ ++||+|||||++++++....+-.+.|
T Consensus 108 ~vlr~dg~~~~V~~~~L-----------~~GDiV~V--~~Gd~IPaDG~vieG~~~VDESaLTG 158 (675)
T TIGR01497 108 KLLRDDGAIDKVPADQL-----------KKGDIVLV--EAGDVIPCDGEVIEGVASVDESAITG 158 (675)
T ss_pred EEEeeCCEEEEEEHHHC-----------CCCCEEEE--CCCCEEeeeEEEEEccEEEEcccccC
Confidence 8886 899999999999 99999999 99999999999999976666655555
No 22
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.51 E-value=1.1e-13 Score=129.67 Aligned_cols=90 Identities=19% Similarity=0.114 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccC
Q psy6873 103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKY 180 (207)
Q Consensus 103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~ 180 (207)
+|+++++++++++++..++.++++|+++. .+.++.+.+++|+|+|+++++++++| +|||++.+ ++
T Consensus 17 ~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~ 83 (536)
T TIGR01512 17 EYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEEL-----------KVGDVVVV--KP 83 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--cC
Confidence 58899999999999999999999999998 88899999999999999999999999 99999999 99
Q ss_pred CCCcccceeeeeecccCCCCCCCCC
Q psy6873 181 SPRTPWDLLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 181 Gd~iPaD~~l~~~~~~~~~~~~~~~ 205 (207)
||+|||||++++++....+-++.|.
T Consensus 84 G~~iP~Dg~ii~g~~~vdes~lTGE 108 (536)
T TIGR01512 84 GERVPVDGVVLSGTSTVDESALTGE 108 (536)
T ss_pred CCEeecceEEEeCcEEEEecccCCC
Confidence 9999999999999988888887774
No 23
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=99.48 E-value=1.1e-13 Score=93.87 Aligned_cols=62 Identities=32% Similarity=0.388 Sum_probs=57.2
Q ss_pred HhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy6873 28 ILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAY 89 (207)
Q Consensus 28 ~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~ 89 (207)
.++++.+.|||.+|+++|+++||+|+++.++.+++|.++++++.+|+.++|++++++|++++
T Consensus 2 ~l~~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 2 RLQTSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred CCCCCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 46788767999999999999999999999988999999999999999999999999998763
No 24
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.44 E-value=1.9e-13 Score=113.91 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCe-EEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcc
Q psy6873 109 ILALTCIVTVLVGYIFRGFSALL--WFGALLSFL-AYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTP 185 (207)
Q Consensus 109 ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iP 185 (207)
+++++++++.++++++++++++. +++++.+.+ ++|+|||+++++++++| +|||++.+ ++||.+|
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L-----------~~GDiI~l--~~g~~vP 67 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSEL-----------VPGDIIIL--KAGDIVP 67 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT------------TTSEEEE--ETTEBES
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhc-----------cceeeeec--ccccccc
Confidence 35677788888999999998888 777888877 99999999999999999 99999999 9999999
Q ss_pred cceeeee-ecccCCCC
Q psy6873 186 WDLLNAG-VRYIPSRY 200 (207)
Q Consensus 186 aD~~l~~-~~~~~~~~ 200 (207)
|||++++ +.....+.
T Consensus 68 aD~~ll~~g~~~vd~s 83 (230)
T PF00122_consen 68 ADGILLESGSAYVDES 83 (230)
T ss_dssp SEEEEEESSEEEEECH
T ss_pred cCccceeccccccccc
Confidence 9999999 65444433
No 25
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.43 E-value=1e-12 Score=123.50 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECC-eEEEeeCcchhhhhhheeeeeeeccEEEEecc
Q psy6873 103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAE-TNEEKPQDNLWLGIILALTCIVTGSLLSVQQK 179 (207)
Q Consensus 103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g-~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~ 179 (207)
.|.++++++++++++.++++++++++++. .+.+..+..++|+|+| +++++++++| +|||++.+ +
T Consensus 17 ~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l-----------~~GDiv~v--~ 83 (556)
T TIGR01525 17 LVLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEEL-----------QVGDIVIV--R 83 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHC-----------CCCCEEEE--C
Confidence 47889999999999999999999999988 7888899999999995 9999999999 99999999 9
Q ss_pred CCCCcccceeeeeecccCCCCCCCCC
Q psy6873 180 YSPRTPWDLLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 180 ~Gd~iPaD~~l~~~~~~~~~~~~~~~ 205 (207)
+||+|||||++++++....+-.+.|.
T Consensus 84 ~G~~iP~Dg~vi~g~~~vdes~lTGE 109 (556)
T TIGR01525 84 PGERIPVDGVVISGESEVDESALTGE 109 (556)
T ss_pred CCCEeccceEEEecceEEeehhccCC
Confidence 99999999999999988777777763
No 26
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.39 E-value=3.3e-12 Score=123.81 Aligned_cols=90 Identities=16% Similarity=-0.013 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccC
Q psy6873 103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKY 180 (207)
Q Consensus 103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~ 180 (207)
.|.++++++++++++..++.+++.|+++. .|.++.|.+++|+|||+++++++++| +|||+|.+ ++
T Consensus 205 ~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l-----------~~GDiv~v--~~ 271 (741)
T PRK11033 205 ATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADL-----------RPGDVIEV--AA 271 (741)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--CC
Confidence 46778888888899999999999999998 89999999999999999999999999 99999999 99
Q ss_pred CCCcccceeeeeecccCCCCCCCCC
Q psy6873 181 SPRTPWDLLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 181 Gd~iPaD~~l~~~~~~~~~~~~~~~ 205 (207)
|++|||||++++++....+-.+.|.
T Consensus 272 G~~IP~Dg~vi~g~~~vdes~lTGE 296 (741)
T PRK11033 272 GGRLPADGKLLSPFASFDESALTGE 296 (741)
T ss_pred CCEEecceEEEECcEEeecccccCC
Confidence 9999999999999887777777663
No 27
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.36 E-value=5.2e-12 Score=126.56 Aligned_cols=125 Identities=22% Similarity=0.056 Sum_probs=96.8
Q ss_pred cCCCCCCCcccCcH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q psy6873 49 DGPNSLPQKYRINN---VYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125 (207)
Q Consensus 49 ~G~N~l~~~~~~s~---~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~ 125 (207)
|..|.+...+-..+ ++.+++||..+.++++++.++++++.... +.+.+...+.++++++++.+..++++
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s--------~~~~~t~~~pL~~v~~~~~~~~~~ed 72 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILS--------PTYRGTSIVPLAFVLIVTAIKEAIED 72 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcC--------CCCccHhHHhHHHHHHHHHHHHHHHH
Confidence 56799987773433 58999999999999999998888774211 11123334445556667888899988
Q ss_pred HHHHHHHHhhcCCCeEEEEEC-CeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc
Q psy6873 126 GFSALLWFGALLSFLAYLLEA-ETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY 195 (207)
Q Consensus 126 ~~~~~~~l~~~~~~~~~ViR~-g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~ 195 (207)
++..++. ++..+..++|+|+ |+++++++++| +|||+|.+ ++||++|||++++++++
T Consensus 73 ~~r~~~d-~~~n~~~~~v~~~~~~~~~i~~~~l-----------~~GDiv~l--~~g~~iPaD~~ll~ss~ 129 (1057)
T TIGR01652 73 IRRRRRD-KEVNNRLTEVLEGHGQFVEIPWKDL-----------RVGDIVKV--KKDERIPADLLLLSSSE 129 (1057)
T ss_pred HHHHHhH-HHHhCcEEEEECCCCcEEEeeeecc-----------cCCCEEEE--cCCCcccceEEEEeccC
Confidence 8888772 2345678999997 89999999999 99999999 99999999999998654
No 28
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.28 E-value=5e-11 Score=112.32 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEEC-CeEEEeeCcchhhhhhheeeeeeeccEEEEecc
Q psy6873 103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEA-ETNEEKPQDNLWLGIILALTCIVTGSLLSVQQK 179 (207)
Q Consensus 103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~-g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~ 179 (207)
+|..++++++++.++..++.+.+.|+++. +|.++.|.+++++|+ |.++++++++| +|||++.+ +
T Consensus 53 ~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l-----------~~GDii~v--~ 119 (562)
T TIGR01511 53 FFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALL-----------QPGDIVKV--L 119 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHC-----------CCCCEEEE--C
Confidence 44555566667777788888888888887 789999999999986 66789999999 99999999 9
Q ss_pred CCCCcccceeeeeecccCCCCCCCC
Q psy6873 180 YSPRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 180 ~Gd~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
+|++|||||++++++....+-.+.|
T Consensus 120 ~Ge~iP~Dg~v~~g~~~vdes~lTG 144 (562)
T TIGR01511 120 PGEKIPVDGTVIEGESEVDESLVTG 144 (562)
T ss_pred CCCEecCceEEEECceEEehHhhcC
Confidence 9999999999999998877777666
No 29
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.19 E-value=2.4e-10 Score=112.13 Aligned_cols=89 Identities=15% Similarity=0.010 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCC
Q psy6873 104 LWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYS 181 (207)
Q Consensus 104 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~G 181 (207)
|-.++.+++++.++.+++.+.+.++.+. +|.++.|..++|+|+|++++++.++| +|||+|.+ ++|
T Consensus 286 ~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l-----------~~GD~v~v--~~G 352 (834)
T PRK10671 286 YEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADV-----------QPGMLLRL--TTG 352 (834)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHc-----------CCCCEEEE--cCC
Confidence 3446777777888888888888888887 88999999999999999999999999 99999999 999
Q ss_pred CCcccceeeeeecccCCCCCCCCC
Q psy6873 182 PRTPWDLLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 182 d~iPaD~~l~~~~~~~~~~~~~~~ 205 (207)
++|||||++++++....+-++.|-
T Consensus 353 ~~iP~Dg~v~~g~~~vdeS~lTGE 376 (834)
T PRK10671 353 DRVPVDGEITQGEAWLDEAMLTGE 376 (834)
T ss_pred CEeeeeEEEEEceEEEeehhhcCC
Confidence 999999999999988888877774
No 30
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.11 E-value=9.9e-10 Score=105.73 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEE-CCeEEEeeCcchhhhhhheeeeeeeccEEEEecc
Q psy6873 103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLE-AETNEEKPQDNLWLGIILALTCIVTGSLLSVQQK 179 (207)
Q Consensus 103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR-~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~ 179 (207)
+|.+++++++++.++..++.+...|+.++ .|.++.|.++++++ ||+.++++.++| .+||++.+ +
T Consensus 173 yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v-----------~~GD~v~V--r 239 (713)
T COG2217 173 YFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEV-----------QVGDIVLV--R 239 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHC-----------CCCCEEEE--C
Confidence 45788888888888888888888888888 89999999998777 565788999999 99999999 9
Q ss_pred CCCCcccceeeeeecccCCCCCCCCC
Q psy6873 180 YSPRTPWDLLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 180 ~Gd~iPaD~~l~~~~~~~~~~~~~~~ 205 (207)
+|++||+||++++|+....+-|+.|-
T Consensus 240 pGE~IPvDG~V~~G~s~vDeS~iTGE 265 (713)
T COG2217 240 PGERIPVDGVVVSGSSSVDESMLTGE 265 (713)
T ss_pred CCCEecCCeEEEeCcEEeecchhhCC
Confidence 99999999999999999999888884
No 31
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.05 E-value=2.3e-10 Score=106.13 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhh--cCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccc
Q psy6873 112 LTCIVTVLVGYIFRGFSALL--WFGA--LLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWD 187 (207)
Q Consensus 112 ~v~~~~~~~~~~~~~~~~~~--~l~~--~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD 187 (207)
++++++.+++.++++++++. .+.+ +.+..++|+|+| ++++++++| +|||++.+ ++||+||||
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l-----------~~GDiv~v--~~G~~iP~D 69 (499)
T TIGR01494 4 ILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-WKEIPASDL-----------VPGDIVLV--KSGEIVPAD 69 (499)
T ss_pred EhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-eEEEEHHHC-----------CCCCEEEE--CCCCEeeee
Confidence 34566677788888888888 6776 778899999999 899999999 99999999 999999999
Q ss_pred eeeeeecccCCCCCCCCC
Q psy6873 188 LLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~ 205 (207)
|++++++....+..+.|-
T Consensus 70 g~vl~g~~~vdes~LTGE 87 (499)
T TIGR01494 70 GVLLSGSCFVDESNLTGE 87 (499)
T ss_pred EEEEEccEEEEcccccCC
Confidence 999999877777777663
No 32
>PLN03190 aminophospholipid translocase; Provisional
Probab=98.99 E-value=3.5e-09 Score=107.09 Aligned_cols=125 Identities=16% Similarity=0.029 Sum_probs=91.6
Q ss_pred hcCCCCCCCcccCcHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy6873 48 KDGPNSLPQKYRINNV----YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123 (207)
Q Consensus 48 ~~G~N~l~~~~~~s~~----~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~ 123 (207)
+|..|.+...+ -++| +.+++||..+.++.+++.+++.++-... +...+...+-++++++++.+-..+
T Consensus 86 ~f~~N~i~TsK-Yt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s--------~~~~~t~~~PL~~vl~v~~ike~~ 156 (1178)
T PLN03190 86 EFAGNSIRTAK-YSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLA--------VFGRGASILPLAFVLLVTAVKDAY 156 (1178)
T ss_pred cCCCCeeeccc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcc--------cCCcchHHHHHHHHHHHHHHHHHH
Confidence 57788888766 5555 4556777777777777777776543211 112244455666667777777777
Q ss_pred HHHHHHHHHHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc
Q psy6873 124 FRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY 195 (207)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~ 195 (207)
.+++..++. +...+..++|+|+|.++++++++| +|||+|.+ ++||++|||++++++++
T Consensus 157 Ed~~r~k~d-~~~N~~~~~v~~~~~~~~i~~~~i-----------~vGDiv~v--~~ge~iPaD~~ll~Ss~ 214 (1178)
T PLN03190 157 EDWRRHRSD-RIENNRLAWVLVDDQFQEKKWKDI-----------RVGEIIKI--QANDTLPCDMVLLSTSD 214 (1178)
T ss_pred HHHHHHHhH-HhhcCcEEEEEECCeEEEEeHHHC-----------CCCCEEEE--CCCCEeeeeEEEEeccC
Confidence 777777661 123467899999999999999999 99999999 99999999999998554
No 33
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=98.59 E-value=5.8e-08 Score=89.43 Aligned_cols=117 Identities=17% Similarity=0.092 Sum_probs=83.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhc--CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCC-CeEEEE
Q psy6873 70 IFRGFSALLWFGALLSFLAYLLEAETN--EEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLS-FLAYLL 144 (207)
Q Consensus 70 ~~~p~~~~Ll~~a~~s~~~~~~~~~~~--~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~-~~~~Vi 144 (207)
.+||.+++.++.++++.++.++....+ +.+...+....+++++.+++..+-+.+.|+|.+.+ +|++... ..++++
T Consensus 30 ~kNPVMFvv~vg~~lt~~l~~~~~lfg~~~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l 109 (681)
T COG2216 30 VKNPVMFVVEVGSILTTFLTIFPDLFGGTGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLL 109 (681)
T ss_pred hhCCeEEeehHHHHHHHHHHHhhhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHh
Confidence 456766666666666664433321111 22333445556667777777778888888887777 7766543 457888
Q ss_pred EC-CeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCC
Q psy6873 145 EA-ETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSR 199 (207)
Q Consensus 145 R~-g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~ 199 (207)
++ |..+.+++.+| ..||+|.+ ++||.||+||.+++|..-..+
T Consensus 110 ~~~g~~~~v~st~L-----------k~gdiV~V--~age~IP~DGeVIeG~asVdE 152 (681)
T COG2216 110 RADGSIEMVPATEL-----------KKGDIVLV--EAGEIIPSDGEVIEGVASVDE 152 (681)
T ss_pred cCCCCeeecccccc-----------ccCCEEEE--ecCCCccCCCeEEeeeeecch
Confidence 86 88999999999 99999999 999999999999999765544
No 34
>KOG0207|consensus
Probab=98.20 E-value=7.9e-06 Score=79.66 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCe-EEEeeCcchhhhhhheeeeeeeccEEEEeccCCC
Q psy6873 106 LGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAET-NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSP 182 (207)
Q Consensus 106 ~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~-~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd 182 (207)
.+.+++..+.+.-.++....+++... .|..+.|..|.++.+|+ .++|+.+.+ -+||++.+ .+|+
T Consensus 343 t~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lv-----------q~gdivkV--~pG~ 409 (951)
T KOG0207|consen 343 TSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLV-----------QVGDIVKV--KPGE 409 (951)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEeecCCcceEeeeeee-----------ccCCEEEE--CCCC
Confidence 33333334444444444444444444 67778889999999996 788999999 99999999 9999
Q ss_pred CcccceeeeeecccCCCCCCCC
Q psy6873 183 RTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 183 ~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
+||+||++++|+.-..+-...|
T Consensus 410 kiPvDG~Vv~Gss~VDEs~iTG 431 (951)
T KOG0207|consen 410 KIPVDGVVVDGSSEVDESLITG 431 (951)
T ss_pred ccccccEEEeCceeechhhccC
Confidence 9999999999997666555544
No 35
>KOG0206|consensus
Probab=97.99 E-value=9.8e-06 Score=81.46 Aligned_cols=129 Identities=16% Similarity=0.043 Sum_probs=96.5
Q ss_pred HHHhcCCCCCCCcccCcHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q psy6873 45 RLEKDGPNSLPQKYRINNV----YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLV 120 (207)
Q Consensus 45 r~~~~G~N~l~~~~~~s~~----~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~ 120 (207)
+...|-.|.++..+ .+++ +.+++||..+-+...++.++++++-.. +...+...+-+++++.++++-
T Consensus 28 ~~~~~~~N~i~TtK-Yt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip~~---------~~~~~~~~~pl~~vl~~t~iK 97 (1151)
T KOG0206|consen 28 PQRKYCDNRISTTK-YTLFTFLPKNLFEQFHRVANLYFLFIAILQFIPLS---------PFNPYTTLVPLLFVLGITAIK 97 (1151)
T ss_pred hhccccCCeeEEEe-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCccc---------ccCccceeeceeeeehHHHHH
Confidence 55589999998765 3333 567788888888888888888876521 112355556677777788888
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEECCe-EEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccC
Q psy6873 121 GYIFRGFSALLWFGALLSFLAYLLEAET-NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIP 197 (207)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~ViR~g~-~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~ 197 (207)
..+.+++..++ =++.+...+.|+|++. ..+...+++ .+||+|.+ ..++.+|||.+++++++-.
T Consensus 98 d~~eD~rR~~~-D~~iN~~~~~v~~~~~~~~~~~wk~~-----------~vGd~v~v--~~~~~~paD~llLsss~~~ 161 (1151)
T KOG0206|consen 98 DAIEDYRRHKQ-DKEVNNRKVEVLRGDGCFVEKKWKDV-----------RVGDIVRV--EKDEFVPADLLLLSSSDED 161 (1151)
T ss_pred HHHhhhhhhhc-cHHhhcceeEEecCCceeeeecccee-----------eeeeEEEe--ccCCccccceEEecCCCCC
Confidence 88888777766 2234457788998644 688899999 99999999 9999999999999987643
No 36
>KOG0210|consensus
Probab=97.92 E-value=4.6e-05 Score=72.81 Aligned_cols=131 Identities=15% Similarity=0.046 Sum_probs=74.4
Q ss_pred HHHHhcCCCCCCCccc--CcH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q psy6873 44 RRLEKDGPNSLPQKYR--INN-VYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLV 120 (207)
Q Consensus 44 ~r~~~~G~N~l~~~~~--~s~-~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~ 120 (207)
.++++|-+|.+...+- -+| ...++++|+.+++..+++.+...+.-.... + ....+|.--+.++.+.++-..+
T Consensus 74 ~~~~r~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~i----g-~l~ty~~pl~fvl~itl~keav 148 (1051)
T KOG0210|consen 74 YRRRRFPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKI----G-YLSTYWGPLGFVLTITLIKEAV 148 (1051)
T ss_pred cccccCCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchhee----c-chhhhhHHHHHHHHHHHHHHHH
Confidence 4666777888776542 122 245566666666654444433333211100 0 0112333333444444555555
Q ss_pred HHHHHHHHHHHHHhhcCCCe-EEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccC
Q psy6873 121 GYIFRGFSALLWFGALLSFL-AYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIP 197 (207)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~~~-~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~ 197 (207)
.-+++++..+. ..... .+.-|+|...+ +++++ .+||+|.+ .++++||||.+++..++-.
T Consensus 149 dd~~r~~rd~~----~Nse~y~~ltr~~~~~~-~Ss~i-----------~vGDvi~v--~K~~RVPADmilLrTsd~s 208 (1051)
T KOG0210|consen 149 DDLKRRRRDRE----LNSEKYTKLTRDGTRRE-PSSDI-----------KVGDVIIV--HKDERVPADMILLRTSDKS 208 (1051)
T ss_pred HHHHHHHhhhh----hhhhhheeeccCCcccc-ccccc-----------ccccEEEE--ecCCcCCcceEEEEccCCC
Confidence 55555544332 11222 33347775444 89999 99999999 9999999999999987644
No 37
>KOG0203|consensus
Probab=96.03 E-value=0.0031 Score=61.73 Aligned_cols=125 Identities=26% Similarity=0.317 Sum_probs=86.7
Q ss_pred cCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHH-HHHHH-HHHHHHHHHHhhhhh
Q psy6873 18 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFS-ALLWF-GALLSFLAYLLEAET 95 (207)
Q Consensus 18 ~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~-~~Ll~-~a~~s~~~~~~~~~~ 95 (207)
.+.+++++.++++.+ +|-++.+|+++|..+.-.+.++..++...+..-.++..+|.. ..=|+ +.-=+|-...+.
T Consensus 24 ~~~~l~~~k~e~~~~-~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~il--- 99 (1019)
T KOG0203|consen 24 KKKELDDLKKEVSMD-DHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSIL--- 99 (1019)
T ss_pred hhhhHHHHhhheeec-cccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHH---
Confidence 445688999999998 699999999999999999999988888888888888877632 11111 222222222221
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEE
Q psy6873 96 NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLS 175 (207)
Q Consensus 96 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~ 175 (207)
.|.++++|++ .|.- -..+....+.++||+|++|..+.++.|-..+
T Consensus 100 --------l~~~a~l~~~-------~y~~--------------------~~s~~~~~~~~nly~giiL~~vv~vtg~~~~ 144 (1019)
T KOG0203|consen 100 --------LWIGAILCFV-------AYGI--------------------QASTEDDPSDDNLYLGIVLAAVVIVTGLFSY 144 (1019)
T ss_pred --------HHHHHHHHHH-------HHhh--------------------hcccCCCCCCcceEEEEEEEEEEEEEecCCC
Confidence 4556666665 4431 1111223678899999999999999999998
Q ss_pred EeccCC
Q psy6873 176 VQQKYS 181 (207)
Q Consensus 176 l~~~~G 181 (207)
.|++.+
T Consensus 145 ~qe~ks 150 (1019)
T KOG0203|consen 145 YQEAKS 150 (1019)
T ss_pred ccchhh
Confidence 875554
No 38
>KOG4383|consensus
Probab=86.36 E-value=1.7 Score=42.56 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh-------hc------------CCC-----e------EEEEECCeE
Q psy6873 103 NLWLGIILALTCIVTVLVGYIFRGFSALL---WFG-------AL------------LSF-----L------AYLLEAETN 149 (207)
Q Consensus 103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~---~l~-------~~------------~~~-----~------~~ViR~g~~ 149 (207)
.+..+.++.+.++.+.++..+|++-.+.. +++ ++ +++ . -...|||..
T Consensus 87 gl~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGhl 166 (1354)
T KOG4383|consen 87 GLSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGHL 166 (1354)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCee
Confidence 46667777777788888888876643332 111 11 111 0 124699999
Q ss_pred EEeeCcchhhhhhheeeeeeeccEEEEeccCCCCccccee
Q psy6873 150 EEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLL 189 (207)
Q Consensus 150 ~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~ 189 (207)
.+++..-| |-|||+.+ ++|+.-||.++
T Consensus 167 m~lP~~LL-----------VeGDiIa~--RPGQeafan~~ 193 (1354)
T KOG4383|consen 167 MELPRILL-----------VEGDIIAF--RPGQEAFANCE 193 (1354)
T ss_pred eecceeEE-----------EeccEEEe--cCCcccccccc
Confidence 99999999 99999999 99999998654
No 39
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=80.29 E-value=1.5 Score=24.88 Aligned_cols=15 Identities=53% Similarity=0.716 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHHHHh
Q psy6873 34 DRGLSELEVKRRLEK 48 (207)
Q Consensus 34 ~~GLs~~ev~~r~~~ 48 (207)
+||||.+|+.+|++.
T Consensus 13 eh~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 13 EHGLSEEEVAERLAA 27 (28)
T ss_pred hcCCCHHHHHHHHHc
Confidence 589999999999975
No 40
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=68.88 E-value=50 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHhc
Q psy6873 22 LEELYSILDTHPDRGLSELEVKRRLEKD 49 (207)
Q Consensus 22 ~~~l~~~l~t~~~~GLs~~ev~~r~~~~ 49 (207)
++++.+++.. +.++.+|+.+|+++-
T Consensus 70 v~~l~~~~~~---~~~~~~ea~~~L~~I 94 (193)
T PF06738_consen 70 VNRLSRRIVA---GQLSLEEAIERLDEI 94 (193)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 5556666553 578999999998874
No 41
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=61.84 E-value=50 Score=28.20 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCe
Q psy6873 103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAET 148 (207)
Q Consensus 103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~ 148 (207)
++|.|+..+.+..+..++-..+.+++++. ++++....++.+++.++
T Consensus 137 e~~~g~~~l~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i~~~~ 184 (237)
T PF13748_consen 137 EFWLGLACLLILALFLLILPRFARRNYRLYRRLNNRLEKEVDIIERRK 184 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHhhcCC
Confidence 46667666666666666555555666655 77777777888777665
No 42
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=56.96 E-value=17 Score=27.52 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=37.5
Q ss_pred HhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcc
Q psy6873 6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKY 58 (207)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~ 58 (207)
+.+.+....+..++++...+.+.+. .|++.+++.+.+++|..|.+|.+.
T Consensus 28 fae~~s~~~~~~yrlT~~Sl~~A~~----~G~~~e~i~~~L~~~S~~~lP~~v 76 (129)
T PF13625_consen 28 FAELKSPDTMHVYRLTPASLWRAAS----AGLTAEEIIEFLERYSKNPLPQNV 76 (129)
T ss_pred HhcccccCceEEEEECHHHHHHHHH----cCCCHHHHHHHHHHHcCCCCCHHH
Confidence 3345445455677888888887765 699999999999999999887544
No 43
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=44.10 E-value=1.6e+02 Score=23.41 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=6.8
Q ss_pred CCCCCHHHHHHH
Q psy6873 34 DRGLSELEVKRR 45 (207)
Q Consensus 34 ~~GLs~~ev~~r 45 (207)
++|.|++|+.++
T Consensus 38 ~~G~sEeeii~~ 49 (181)
T PF08006_consen 38 EEGKSEEEIIAE 49 (181)
T ss_pred hCCCCHHHHHHH
Confidence 456666665433
No 44
>PF15584 Imm44: Immunity protein 44
Probab=42.80 E-value=13 Score=27.09 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=14.8
Q ss_pred ccEEEEeccCCCCcccceeee
Q psy6873 171 GSLLSVQQKYSPRTPWDLLNA 191 (207)
Q Consensus 171 GDiv~l~~~~Gd~iPaD~~l~ 191 (207)
.+-..+ +.|++|||||+--
T Consensus 14 ~~~~~I--~SG~~iP~~GIwE 32 (94)
T PF15584_consen 14 SEGGVI--KSGQEIPCDGIWE 32 (94)
T ss_pred CCCCEE--ecCCCcccCCeEc
Confidence 344567 8999999999854
No 45
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=40.67 E-value=1.3e+02 Score=24.65 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=23.4
Q ss_pred eccEEEEeccCCC----CcccceeeeeecccCCCC
Q psy6873 170 TGSLLSVQQKYSP----RTPWDLLNAGVRYIPSRY 200 (207)
Q Consensus 170 ~GDiv~l~~~~Gd----~iPaD~~l~~~~~~~~~~ 200 (207)
.+..+++ .+.| .-|+||.+.+.++++-++
T Consensus 80 ~~i~i~l--sp~d~H~~~aP~~G~V~~~~~~~G~~ 112 (206)
T PRK05305 80 LRISIFM--SVFNVHVNRAPVSGTVTKVEYRPGKF 112 (206)
T ss_pred EEEEEEE--CcccCCEEEeCccCEEEEEEEECCeE
Confidence 3677788 6766 799999999999988763
No 46
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=40.67 E-value=15 Score=26.19 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=16.0
Q ss_pred eeccEEEEeccCCCCcccceeee
Q psy6873 169 VTGSLLSVQQKYSPRTPWDLLNA 191 (207)
Q Consensus 169 V~GDiv~l~~~~Gd~iPaD~~l~ 191 (207)
-+||.|.+. ++||.||-=..++
T Consensus 51 ~~Gd~V~V~-raGdVIP~I~~vv 72 (82)
T PF03120_consen 51 RIGDTVLVT-RAGDVIPKIVGVV 72 (82)
T ss_dssp BBT-EEEEE-EETTTEEEEEEE-
T ss_pred CCCCEEEEE-ECCCccceEeEee
Confidence 899999995 9999999644333
No 47
>PRK11507 ribosome-associated protein; Provisional
Probab=35.50 E-value=37 Score=23.45 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.6
Q ss_pred EEEECCeEEEeeCcchhhhhhheeeeeeeccEEEE
Q psy6873 142 YLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSV 176 (207)
Q Consensus 142 ~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l 176 (207)
.|..||+...-.-..| .|||+|.+
T Consensus 38 ~V~VNGeve~rRgkKl-----------~~GD~V~~ 61 (70)
T PRK11507 38 QVKVDGAVETRKRCKI-----------VAGQTVSF 61 (70)
T ss_pred ceEECCEEecccCCCC-----------CCCCEEEE
Confidence 5678998777788899 99999999
No 48
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=33.98 E-value=3.2e+02 Score=24.98 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhcCCCCCCCcc-cCcHHHHHHHhhhhhHH--HHHHHHHHHHHHH
Q psy6873 37 LSELEVKRRLEKDGPNSLPQKY-RINNVYILVGYIFRGFS--ALLWFGALLSFLA 88 (207)
Q Consensus 37 Ls~~ev~~r~~~~G~N~l~~~~-~~s~~~~~~~~~~~p~~--~~Ll~~a~~s~~~ 88 (207)
.+..+......+ |...++.+. .+..+..+++++..... ..+++.+++|..+
T Consensus 60 ~~~~~~~~~~~~-G~~~~s~~~i~~~l~~~lf~ev~~~~~lL~~il~laii~Avl 113 (381)
T TIGR02829 60 ESQKYSLMEFLR-GEKPFSVKKIGEALLSYLFHELLSNGKLLGTLIILAIICALL 113 (381)
T ss_pred ccHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555554444 777776543 45566677777776533 2334444444433
No 49
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=31.58 E-value=26 Score=22.73 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=10.2
Q ss_pred eeccEEEEeccCCC
Q psy6873 169 VTGSLLSVQQKYSP 182 (207)
Q Consensus 169 V~GDiv~l~~~~Gd 182 (207)
.+||+|.| +.|-
T Consensus 2 ~~GDvV~L--KSGG 13 (53)
T PF09926_consen 2 KIGDVVQL--KSGG 13 (53)
T ss_pred CCCCEEEE--ccCC
Confidence 68999999 7774
No 50
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=5.3e+02 Score=24.94 Aligned_cols=33 Identities=24% Similarity=0.137 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhh
Q psy6873 40 LEVKRRLEKDGPNSLPQKYRINNVYILVGYIFR 72 (207)
Q Consensus 40 ~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~ 72 (207)
+++.++..+-|+|.+...+.-++.....+++-+
T Consensus 77 ~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~ 109 (559)
T COG4988 77 QLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQ 109 (559)
T ss_pred HHHHHHHHhCChhhhcCCCcchHHHHHHHHHHH
Confidence 456677788899888877766666666555443
No 51
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=28.44 E-value=40 Score=22.94 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=17.5
Q ss_pred HhcCCCCCCCcccCcHHHHHHHhhhhh
Q psy6873 47 EKDGPNSLPQKYRINNVYILVGYIFRG 73 (207)
Q Consensus 47 ~~~G~N~l~~~~~~s~~~~~~~~~~~p 73 (207)
+.|+.|...-+..++||..+.+.+.=.
T Consensus 8 ~q~~~~q~~y~~lkPWwdvf~~YL~~~ 34 (65)
T PF12534_consen 8 QQYSENQPCYRILKPWWDVFFDYLVLL 34 (65)
T ss_pred HHHHhhHHHHHHHccHHHHHHHHHHHH
Confidence 445555555566788888887765433
No 52
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=28.22 E-value=1.3e+02 Score=20.45 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=23.2
Q ss_pred CCeEEEEECCeEEEeeC---cchhhhhhheeeeeeeccEEEEeccCCC
Q psy6873 138 SFLAYLLEAETNEEKPQ---DNLWLGIILALTCIVTGSLLSVQQKYSP 182 (207)
Q Consensus 138 ~~~~~ViR~g~~~~i~~---~~L~~~~~~~~~~~V~GDiv~l~~~~Gd 182 (207)
...+.|-.+|..++++. .++ .|||.|.+ ..|-
T Consensus 16 ~~~A~v~~~G~~~~V~~~lv~~v-----------~~Gd~VLV--HaG~ 50 (68)
T PF01455_consen 16 GGMAVVDFGGVRREVSLALVPDV-----------KVGDYVLV--HAGF 50 (68)
T ss_dssp TTEEEEEETTEEEEEEGTTCTSB------------TT-EEEE--ETTE
T ss_pred CCEEEEEcCCcEEEEEEEEeCCC-----------CCCCEEEE--ecCh
Confidence 35678888898888864 457 89999999 7774
No 53
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=23.76 E-value=6e+02 Score=23.70 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=46.5
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHhhhhhcCCCCc
Q psy6873 26 YSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFS----ALLWFGALLSFLAYLLEAETNEEKPQ 101 (207)
Q Consensus 26 ~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~----~~Ll~~a~~s~~~~~~~~~~~~~~~~ 101 (207)
+..+.+.. .|++.+|+.+++++.|.=---..+.+.--+..++...+... .++.+.+++..++..
T Consensus 356 Fs~fy~~i-~g~~p~diAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~~~~~----------- 423 (462)
T PRK08568 356 FAIFWVET-TGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLADLLGA----------- 423 (462)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 34444442 58999999999999876433333323223455555554433 233333333333321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6873 102 DNLWLGIILALTCIVTVLVGYIFRGFSALL 131 (207)
Q Consensus 102 ~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~ 131 (207)
+ +...-+++++++.++.+++.+++..
T Consensus 424 --~--g~gtslLI~Vgv~~~~~~qi~~~~~ 449 (462)
T PRK08568 424 --L--GGGTGLLLTVSIVYQLYEEIAREQL 449 (462)
T ss_pred --c--CCchhhhhhHHHHHHHHHHHHHHHH
Confidence 1 1122234445666677776666655
No 54
>COG5547 Small integral membrane protein [Function unknown]
Probab=23.34 E-value=2.4e+02 Score=18.83 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy6873 104 LWLGIILALTCIVTVLVGYIFRGF 127 (207)
Q Consensus 104 ~~~~~ii~~v~~~~~~~~~~~~~~ 127 (207)
+|-.+.+++.+.+.+.++++.++.
T Consensus 29 fwKtilviil~~lGv~iGl~~~r~ 52 (62)
T COG5547 29 FWKTILVIILILLGVYIGLYKKRT 52 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666677777888888875543
No 55
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=22.10 E-value=1.2e+02 Score=22.50 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=26.0
Q ss_pred HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCC
Q psy6873 132 WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSP 182 (207)
Q Consensus 132 ~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd 182 (207)
.+.+.+...-+|.-||... -++.++ .+||++.+ .-|.
T Consensus 25 slAk~~~~~GrV~vNG~~a-KpS~~V-----------K~GD~l~i--~~~~ 61 (100)
T COG1188 25 SLAKEMIEGGRVKVNGQRA-KPSKEV-----------KVGDILTI--RFGN 61 (100)
T ss_pred HHHHHHHHCCeEEECCEEc-cccccc-----------CCCCEEEE--EeCC
Confidence 3444445556677788644 688999 99999999 5544
No 56
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=21.59 E-value=2.2e+02 Score=29.27 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=32.6
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhh
Q psy6873 25 LYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIF 71 (207)
Q Consensus 25 l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~ 71 (207)
.......+ .|.++.+++.++++..-.++++........+.++.|-.
T Consensus 9 ~~~~~~~~-~~~~~~~~~~~~l~t~~~~GLs~~e~~~rl~~~G~N~l 54 (997)
T TIGR01106 9 LKKEVEMD-DHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNAL 54 (997)
T ss_pred hhhhccCC-chhCCHHHHHHHhCcCcccCCCHHHHHHHHHHhCCCCC
Confidence 33344455 47888899988887766668887776777777777754
No 57
>PRK04980 hypothetical protein; Provisional
Probab=21.45 E-value=88 Score=23.17 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=23.5
Q ss_pred eeccEEEEeccCCCCcccceeeeeeccc
Q psy6873 169 VTGSLLSVQQKYSPRTPWDLLNAGVRYI 196 (207)
Q Consensus 169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~~ 196 (207)
.|||.+.+....+++.-|+..+++...+
T Consensus 33 ~~G~~~~V~~~e~g~~~c~ieI~sV~~i 60 (102)
T PRK04980 33 KPGDVLRVGTFEDDRYFCTIEVLSVSPV 60 (102)
T ss_pred CCCCEEEEEECCCCcEEEEEEEEEEEEE
Confidence 8999999933488999999999988754
No 58
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.79 E-value=1.2e+02 Score=18.84 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCc
Q psy6873 35 RGLSELEVKRRLEKDGPNSLPQK 57 (207)
Q Consensus 35 ~GLs~~ev~~r~~~~G~N~l~~~ 57 (207)
..||.+|+.+++..||.+--|..
T Consensus 4 ~~LSd~eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 4 DRLSDAELRAELKQYGLPPGPIT 26 (44)
T ss_pred hHcCHHHHHHHHHHcCCCCCCcC
Confidence 46899999999999999887754
No 59
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.75 E-value=3e+02 Score=19.00 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy6873 74 FSALLWFGALLSFLAYLLE 92 (207)
Q Consensus 74 ~~~~Ll~~a~~s~~~~~~~ 92 (207)
+..++.++++++|+.+++.
T Consensus 13 ~~~il~~~~iisfi~Gy~~ 31 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYIT 31 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788888888887654
No 60
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=20.72 E-value=1.1e+02 Score=27.70 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=24.0
Q ss_pred CeEEEEECCeEEEeeCcchhh-hhhheeeeeeeccEEEE
Q psy6873 139 FLAYLLEAETNEEKPQDNLWL-GIILALTCIVTGSLLSV 176 (207)
Q Consensus 139 ~~~~ViR~g~~~~i~~~~L~~-~~~~~~~~~V~GDiv~l 176 (207)
..+.+.|+|+...++-.++.- |-.--=+.+.+||+|++
T Consensus 211 ~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~V 249 (379)
T PRK15078 211 RNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYV 249 (379)
T ss_pred ceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEE
Confidence 468899999988887555421 11111123478998888
No 61
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=20.70 E-value=1.1e+02 Score=21.04 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=18.1
Q ss_pred EEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEE
Q psy6873 141 AYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSV 176 (207)
Q Consensus 141 ~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l 176 (207)
..+.++|+...+.+++| .+||.+.+
T Consensus 74 ~~~~~~~~~~w~~a~~l-----------~~gd~v~~ 98 (100)
T smart00306 74 LLVRDGGKLVWVFASEL-----------KPGDYVLV 98 (100)
T ss_pred EEEecCCcEEEEEHHHC-----------CCCCEEEe
Confidence 34455555567888899 89998877
Done!