Query psy6873
Match_columns 207
No_of_seqs 214 out of 1608
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 20:35:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 100.0 3.8E-33 1.3E-37 275.4 18.2 189 3-204 39-230 (1034)
2 2zxe_A Na, K-ATPase alpha subu 100.0 8.1E-32 2.8E-36 265.8 15.4 178 5-195 36-215 (1028)
3 3ar4_A Sarcoplasmic/endoplasmi 99.9 6.3E-28 2.2E-32 237.3 14.3 163 16-194 4-170 (995)
4 1mhs_A Proton pump, plasma mem 99.9 6.2E-26 2.1E-30 221.3 12.1 152 26-204 77-232 (920)
5 3b8c_A ATPase 2, plasma membra 99.9 9.4E-29 3.2E-33 240.6 -8.1 178 6-205 4-184 (885)
6 3rfu_A Copper efflux ATPase; a 99.3 3.2E-12 1.1E-16 122.4 10.4 90 103-205 186-279 (736)
7 2hc8_A PACS, cation-transporti 99.3 1.4E-12 4.8E-17 97.6 4.2 60 132-204 5-64 (113)
8 3j08_A COPA, copper-exporting 99.3 2.6E-12 9E-17 121.3 6.3 88 104-204 96-185 (645)
9 2kij_A Copper-transporting ATP 99.3 2.2E-12 7.6E-17 97.9 4.6 66 127-205 4-77 (124)
10 3j09_A COPA, copper-exporting 99.3 4.6E-12 1.6E-16 121.0 7.7 88 104-204 174-263 (723)
11 2jmz_A Hypothetical protein MJ 60.8 7.3 0.00025 30.2 3.6 35 140-187 104-138 (186)
12 2lcj_A PAB POLC intein; hydrol 40.7 61 0.0021 24.8 6.0 30 140-182 94-123 (185)
13 1bg5_A MAB, fusion protein of 38.7 0.18 6.2E-06 40.9 -9.5 31 116-146 222-254 (254)
14 3ixz_A Potassium-transporting 34.9 38 0.0013 33.3 4.7 51 21-72 41-91 (1034)
15 4aw6_A CAAX prenyl protease 1 26.0 2.9E+02 0.0099 24.7 8.6 40 47-92 151-190 (482)
16 3p42_A Predicted protein; beta 22.9 85 0.0029 25.3 4.1 30 136-176 163-200 (236)
17 3sgi_A DNA ligase; HET: DNA AM 22.3 35 0.0012 31.8 1.9 22 169-191 380-402 (615)
18 2l1t_A Uncharacterized protein 20.2 33 0.0011 24.7 1.0 35 169-204 40-74 (109)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=100.00 E-value=3.8e-33 Score=275.38 Aligned_cols=189 Identities=24% Similarity=0.360 Sum_probs=170.1
Q ss_pred hhHHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHH
Q psy6873 3 VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGA 82 (207)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a 82 (207)
++++++++++.+++||.++.+++.+.|++++++|||.+|+++|+++||+|+++.++++++|++|+++|++|+.++|++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa 118 (1034)
T 3ixz_A 39 KEKLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAA 118 (1034)
T ss_pred hhhHHHHhhhcCcchhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHH
Confidence 46789999999999999999999999999988999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhh
Q psy6873 83 LLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLG 160 (207)
Q Consensus 83 ~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~ 160 (207)
++|++.+++....++....++++++++++++++++++++++||+|++++ +++++.+.+++|+|||+++++++++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eL--- 195 (1034)
T 3ixz_A 119 AICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQL--- 195 (1034)
T ss_pred HHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHC---
Confidence 9999887654333333334578999999999999999999999999998 89999999999999999999999999
Q ss_pred hhheeeeeeeccEEEEeccCCCCcccceeeeeeccc-CCCCCCCC
Q psy6873 161 IILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSG 204 (207)
Q Consensus 161 ~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~ 204 (207)
||||+|.+ ++||+|||||++++++++ ..+-++.|
T Consensus 196 --------v~GDiV~l--~~Gd~VPAD~~ll~~~~l~VdES~LTG 230 (1034)
T 3ixz_A 196 --------VVGDLVEM--KGGDRVPADIRILQAQGRKVDNSSLTG 230 (1034)
T ss_pred --------CCCcEEEE--cCCceecCCeEEEEeCCceEEecccCC
Confidence 99999999 999999999999999864 45555544
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.97 E-value=8.1e-32 Score=265.76 Aligned_cols=178 Identities=34% Similarity=0.517 Sum_probs=161.9
Q ss_pred HHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHH
Q psy6873 5 QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALL 84 (207)
Q Consensus 5 ~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~ 84 (207)
++++++++.+++||.++.+++.+.|+++.++|||.+|+++|+++||+|+++.++++++|+.++++|++||.++|++++++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~l 115 (1028)
T 2zxe_A 36 DLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAIL 115 (1028)
T ss_dssp -CCTTTTSCCCCCSSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHH
T ss_pred hHHHHhhhcCcchhhCCHHHHHHHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46788888899999999999999999998799999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhh
Q psy6873 85 SFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGII 162 (207)
Q Consensus 85 s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~ 162 (207)
|++++.+....++.+..++|+++++++++++++++++++|++++++. +|+++.+.+++|+|||++++|++++|
T Consensus 116 s~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~L----- 190 (1028)
T 2zxe_A 116 CFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFV----- 190 (1028)
T ss_dssp HHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGC-----
T ss_pred HHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHC-----
Confidence 99887665332222334579999999999999999999999998887 88999999999999999999999999
Q ss_pred heeeeeeeccEEEEeccCCCCcccceeeeeecc
Q psy6873 163 LALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY 195 (207)
Q Consensus 163 ~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~ 195 (207)
||||+|.+ ++||+|||||+++++++
T Consensus 191 ------v~GDiV~l--~~Gd~IPaD~~ll~g~~ 215 (1028)
T 2zxe_A 191 ------VAGDLVEV--KGGDRIPADLRIISAHG 215 (1028)
T ss_dssp ------CTTCEEEE--ETTCBCCSEEEEEEEEE
T ss_pred ------CcCCEEEE--CCCCEeeceEEEEeeCc
Confidence 99999999 99999999999999974
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.95 E-value=6.3e-28 Score=237.34 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=145.7
Q ss_pred cccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6873 16 DEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAET 95 (207)
Q Consensus 16 ~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~ 95 (207)
+||..+.+++.+.|+++.++|||.+|+++|+++||+|+++.++++++|+.++++|++|+++++++++++|++++....
T Consensus 4 ~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~-- 81 (995)
T 3ar4_A 4 AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE-- 81 (995)
T ss_dssp TGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCC--
T ss_pred hhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 589999999999999998889999999999999999999998889999999999999999999999999988764321
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCe--EEEeeCcchhhhhhheeeeeeec
Q psy6873 96 NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAET--NEEKPQDNLWLGIILALTCIVTG 171 (207)
Q Consensus 96 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~--~~~i~~~~L~~~~~~~~~~~V~G 171 (207)
++.....|++++++++++++++.++++||++++++ +|+++.+.+++|+|||+ .+++++++| |||
T Consensus 82 -~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~l-----------v~G 149 (995)
T 3ar4_A 82 -GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDI-----------VPG 149 (995)
T ss_dssp -SSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGC-----------CTT
T ss_pred -cccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHC-----------CCC
Confidence 00112368899999999999999999999999887 88999999999999987 689999999 999
Q ss_pred cEEEEeccCCCCcccceeeeeec
Q psy6873 172 SLLSVQQKYSPRTPWDLLNAGVR 194 (207)
Q Consensus 172 Div~l~~~~Gd~iPaD~~l~~~~ 194 (207)
|+|.+ ++||+|||||++++++
T Consensus 150 DiV~l--~~Gd~IPaD~~ll~~~ 170 (995)
T 3ar4_A 150 DIVEV--AVGDKVPADIRILSIK 170 (995)
T ss_dssp CEEEE--ETTCBCCSEEEEEEEC
T ss_pred CEEEE--CCCCcccccEEEEEEe
Confidence 99999 9999999999997643
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.93 E-value=6.2e-26 Score=221.34 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=136.8
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhH
Q psy6873 26 YSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLW 105 (207)
Q Consensus 26 ~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~ 105 (207)
.+.|+++..+|||.+|+++|+++||+|+++.++ +++|..|+++|.+|+.+++++++++++++ +.|.
T Consensus 77 ~~~l~t~~~~GLs~~ea~~r~~~~G~N~l~~~~-~~~~~~~l~~f~~~~~~ll~~aai~s~~~-------------g~~~ 142 (920)
T 1mhs_A 77 EDMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEK-ENHFLKFLGFFVGPIQFVMEGAAVLAAGL-------------EDWV 142 (920)
T ss_dssp STTTTTCCCCCCCSHHHHHHHHHTSSSSCCCCC-CSSHHHHTHHHHHHHHHHHHHHHHHCTTC-------------SCSS
T ss_pred HHHhCCCcCCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhHH
Confidence 456788777899999999999999999999665 88999999999999999999888888764 2588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCC
Q psy6873 106 LGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183 (207)
Q Consensus 106 ~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~ 183 (207)
++++++++++++++++++|+++++++ +|+++.+.+++|+|||+++++++++| ||||+|.+ ++||+
T Consensus 143 ~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~~~~I~~~eL-----------v~GDiV~l--~~Gd~ 209 (920)
T 1mhs_A 143 DFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEV-----------VPGDILQV--EEGTI 209 (920)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSSEEECCTTTS-----------CTTSEEEE--CTTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEECCEEEEEEHHHc-----------CCCCEEEe--CCCCc
Confidence 88888899999999999999999998 78889999999999999999999999 99999999 99999
Q ss_pred cccceeeeeecc--cCCCCCCCC
Q psy6873 184 TPWDLLNAGVRY--IPSRYPKSG 204 (207)
Q Consensus 184 iPaD~~l~~~~~--~~~~~~~~~ 204 (207)
|||||++++++. ...+-++.|
T Consensus 210 VPaDg~ll~g~~~l~VDES~LTG 232 (920)
T 1mhs_A 210 IPADGRIVTDDAFLQVDQSALTG 232 (920)
T ss_dssp CSSEEEEEEESSCCEEBCTTTSS
T ss_pred cccceEEEecCceeeeeccccCC
Confidence 999999999985 666666666
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.93 E-value=9.4e-29 Score=240.60 Aligned_cols=178 Identities=20% Similarity=0.242 Sum_probs=151.2
Q ss_pred HhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6873 6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLS 85 (207)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s 85 (207)
+++.+++ +.++|.++.+++.+.|+++ .+|||.+|+++|+++||+|+++.++ ++.|..|+++|++|+.++|+++++++
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis 80 (885)
T 3b8c_A 4 LEDIKNE-TVDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMA 80 (885)
T ss_dssp ---------CCCSSSSTTCCTTTSSSC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGG
T ss_pred hhhhhhc-chhhHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 5789999999999999998 5899999999999999999998877 88889999999999999999999998
Q ss_pred HHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhh
Q psy6873 86 FLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIIL 163 (207)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~ 163 (207)
++++... .....|.++++++++++++..++++|+++++++ +|+++.+.+++|+|||+++++++++|
T Consensus 81 ~~l~~~~------~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG~~~~I~~~~L------ 148 (885)
T 3b8c_A 81 IALANGD------GRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAIL------ 148 (885)
T ss_dssp GGSSCCT------TSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTT------
T ss_pred HHHHhcc------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCEEEEEEHHHC------
Confidence 7764211 112358888888888899999999999999888 88889999999999999999999999
Q ss_pred eeeeeeeccEEEEeccCCCCcccceeeeeeccc-CCCCCCCCC
Q psy6873 164 ALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSGA 205 (207)
Q Consensus 164 ~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~~ 205 (207)
||||+|.+ ++||+|||||++++++.+ ..+-++.|-
T Consensus 149 -----v~GDiV~l--~~Gd~IPaDg~ll~g~~l~VdES~LTGE 184 (885)
T 3b8c_A 149 -----VPGDIVSI--KLGDIIPADARLLEGDPLKVDQSALTGE 184 (885)
T ss_dssp -----CTTSBCCC--CSSCCCSSCCCCCCSSCBCCCCCSTTCC
T ss_pred -----CCCCEEEE--CCCCEEeeceEEEEcCcccccccccCCC
Confidence 99999999 999999999999999984 777777663
No 6
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=99.33 E-value=3.2e-12 Score=122.40 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=78.4
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEE-CCeEEEeeCcchhhhhhheeeeeeeccEEEEec
Q psy6873 103 NLWLG-IILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLE-AETNEEKPQDNLWLGIILALTCIVTGSLLSVQQ 178 (207)
Q Consensus 103 ~~~~~-~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR-~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~ 178 (207)
.|+++ ++++++++++..++.++++++.+. +|.++.+.+++|+| ||+++++++++| +|||+|.+
T Consensus 186 ~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l-----------~~GDiv~v-- 252 (736)
T 3rfu_A 186 VYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNV-----------AVGDLLRV-- 252 (736)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTC-----------CTTCEECC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhC-----------CCCCEEEE--
Confidence 35554 466677888888888888887776 78899999999998 999999999999 99999999
Q ss_pred cCCCCcccceeeeeecccCCCCCCCCC
Q psy6873 179 KYSPRTPWDLLNAGVRYIPSRYPKSGA 205 (207)
Q Consensus 179 ~~Gd~iPaD~~l~~~~~~~~~~~~~~~ 205 (207)
++||+|||||++++++....+-++.|-
T Consensus 253 ~~Ge~IPaDg~vl~G~~~VDES~LTGE 279 (736)
T 3rfu_A 253 RPGEKIPVDGEVQEGRSFVDESMVTGE 279 (736)
T ss_dssp CSSEECCSCEEECSSCEEEECSSSTTC
T ss_pred CCCCcccccEEEEECceEeeecccCCc
Confidence 999999999999999998888888774
No 7
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.29 E-value=1.4e-12 Score=97.58 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873 132 WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 132 ~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
+|.++.+..++|+|+|+++++++++| +|||++.+ ++||+|||||+++++.....+-++.|
T Consensus 5 ~L~~l~p~~a~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~G~~iPaDg~v~~g~~~vdeS~LTG 64 (113)
T 2hc8_A 5 KLVGLQAKTAVVIRDGKEIAVPVEEV-----------AVGDIVIV--RPGEKIPVDGVVVEGESYVDESMISG 64 (113)
T ss_dssp HHHHHSCSEEEEEETTEEEEEEGGGC-----------CTTCEEEE--CTTCBCCSEEEEEECCEEEECHHHHC
T ss_pred HHhcCCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--CCCCEEeeeEEEEEceEEEEccccCC
Confidence 57788999999999999999999999 99999999 99999999999999986655554444
No 8
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.28 E-value=2.6e-12 Score=121.34 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCC
Q psy6873 104 LWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYS 181 (207)
Q Consensus 104 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~G 181 (207)
|..+++++++++++..++.++++|+.+. ++.++.+.+++|+|||+++++++++| +|||+|.+ ++|
T Consensus 96 ~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~G 162 (645)
T 3j08_A 96 YETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEV-----------AVGDIVIV--RPG 162 (645)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTEEEEEEGGGC-----------CTTCEEEE--CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--CCC
Confidence 4446667777777777777777776666 88899999999999999999999999 99999999 999
Q ss_pred CCcccceeeeeecccCCCCCCCC
Q psy6873 182 PRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 182 d~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
|+|||||++++++....+-++.|
T Consensus 163 e~IPaDg~vl~G~~~VdeS~LTG 185 (645)
T 3j08_A 163 EKIPVDGVVVEGESYVDESMISG 185 (645)
T ss_dssp CBCCSEEEEEECCEEEECHHHHC
T ss_pred CEEeeEEEEEECcEEEEcccccC
Confidence 99999999999988776665555
No 9
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=97.94 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=56.8
Q ss_pred HHHHH--HHhhcCCCeEEEEECCe------EEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCC
Q psy6873 127 FSALL--WFGALLSFLAYLLEAET------NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPS 198 (207)
Q Consensus 127 ~~~~~--~l~~~~~~~~~ViR~g~------~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~ 198 (207)
+++++ +|.++.+..++|+|+|. ++++++++| +|||+|.+ ++||+|||||++++++....
T Consensus 4 ka~~~l~~L~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l-----------~~GDiv~v--~~G~~iPaDg~vi~g~~~vd 70 (124)
T 2kij_A 4 TMSEALAKLISLQATEATIVTLDSDNILLSEEQVDVELV-----------QRGDIIKV--VPGGKFPVDGRVIEGHSMVD 70 (124)
T ss_dssp --CCHHHHHHHTCCSEEEEEECSSSTTCCEEEEEETTTC-----------CTTCEEEC--CTTCBCSSCEEECSCCCEEE
T ss_pred HHHHHHHHHhccCCCEEEEEECCCCCceeEEEEEeHHHC-----------CCCCEEEE--CCCCEEEeeEEEEEccEEEE
Confidence 34444 78899999999999764 678999999 99999999 99999999999999998888
Q ss_pred CCCCCCC
Q psy6873 199 RYPKSGA 205 (207)
Q Consensus 199 ~~~~~~~ 205 (207)
+-++.|-
T Consensus 71 eS~LTGE 77 (124)
T 2kij_A 71 ESLITGE 77 (124)
T ss_dssp CTTTTCC
T ss_pred eccccCC
Confidence 8888774
No 10
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.27 E-value=4.6e-12 Score=121.03 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCC
Q psy6873 104 LWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYS 181 (207)
Q Consensus 104 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~G 181 (207)
|..+++++++++++..++.++++|+.+. ++.++.+..++|+|||+++++++++| +|||+|.+ ++|
T Consensus 174 ~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~G 240 (723)
T 3j09_A 174 YETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEV-----------AVGDIVIV--RPG 240 (723)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGC-----------CTTCEEEE--CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCEEEEEEHHHC-----------CCCCEEEE--CCC
Confidence 3445666667777777777777776665 78889999999999999999999999 99999999 999
Q ss_pred CCcccceeeeeecccCCCCCCCC
Q psy6873 182 PRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 182 d~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
|+|||||++++++....+-++.|
T Consensus 241 e~IPaDg~vl~G~~~VdeS~LTG 263 (723)
T 3j09_A 241 EKIPVDGVVVEGESYVDESMISG 263 (723)
T ss_dssp CBCCSEEEEEECCEEEECHHHHC
T ss_pred CEEeeEEEEEECCeEEecccccC
Confidence 99999999999988776666555
No 11
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=60.77 E-value=7.3 Score=30.25 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=28.8
Q ss_pred eEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccc
Q psy6873 140 LAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWD 187 (207)
Q Consensus 140 ~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD 187 (207)
...+.++|+...+.+++| .+||.|.+ ..|..++.|
T Consensus 104 p~~v~~~g~~~w~~A~eL-----------k~GD~v~~--~~~~~~~~~ 138 (186)
T 2jmz_A 104 PVYISKTGEVLEINAEMV-----------KVGDYIYI--PKNNTINLD 138 (186)
T ss_dssp EEEEEETTEEEEEEGGGC-----------CTTSEEEE--ECSSSEEEE
T ss_pred EEEEeCCCeEEEEEhhcC-----------CCCCEEEe--cccCCccce
Confidence 467778888889999999 99999999 666666665
No 12
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=40.75 E-value=61 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.015 Sum_probs=24.8
Q ss_pred eEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCC
Q psy6873 140 LAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSP 182 (207)
Q Consensus 140 ~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd 182 (207)
...+.++|+...+.+++| .+||.+.+ ..++
T Consensus 94 ~~~v~~~g~~~~~~A~eL-----------k~GD~v~v--~~~~ 123 (185)
T 2lcj_A 94 PVLVYENGRFIEKRAFEV-----------KEGDKVLV--SELE 123 (185)
T ss_dssp EEEEEETTEEEEEEGGGC-----------CTTCEEEE--CCCC
T ss_pred EEEEecCCeEEEEEHHHC-----------CCCCEEEE--cccc
Confidence 456778888888999999 99999999 6644
No 13
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5
Probab=38.73 E-value=0.18 Score=40.94 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHH--HHhhcCCCeEEEEEC
Q psy6873 116 VTVLVGYIFRGFSALL--WFGALLSFLAYLLEA 146 (207)
Q Consensus 116 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~ 146 (207)
+++.++++|+.++++. ++++++|.+|+|+|.
T Consensus 222 i~~~~~~~q~~~~~~~~~~~~~~~p~~~~v~~~ 254 (254)
T 1bg5_A 222 VPRGSSYYQEAKSSKIMESFKNMVPQQALVNSS 254 (254)
T ss_dssp CSCCCTTTTCSSSCSCCSSSCCCCCCCCCCSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCCCceEEecC
Confidence 5667799999999988 899999999999884
No 14
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=34.93 E-value=38 Score=33.28 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=40.4
Q ss_pred CHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhh
Q psy6873 21 PLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFR 72 (207)
Q Consensus 21 ~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~ 72 (207)
..+++.++...+ .|-++.+|+.+++...-.++++........+.++.|-..
T Consensus 41 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~ 91 (1034)
T 3ixz_A 41 KLENMKKEMEIN-DHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALR 91 (1034)
T ss_pred hHHHHhhhcCcc-hhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCC
Confidence 466777777766 488999999999998777899988877788888877654
No 15
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=25.97 E-value=2.9e+02 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=22.6
Q ss_pred HhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q psy6873 47 EKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLE 92 (207)
Q Consensus 47 ~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~ 92 (207)
++||-|+-+ +...+.+.+++......+...+++.+++.+.
T Consensus 151 ~~~Gfnk~t------~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~ 190 (482)
T 4aw6_A 151 EKHGFNQQT------LGFFMKDAIKKFVVTQCILLPVSSLLLYIIK 190 (482)
T ss_dssp HHTTCBCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999643 3335666777665544444444554444443
No 16
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=22.94 E-value=85 Score=25.31 Aligned_cols=30 Identities=13% Similarity=-0.015 Sum_probs=22.2
Q ss_pred cCCCeEEEEE-CCeEEEeeC-------cchhhhhhheeeeeeeccEEEE
Q psy6873 136 LLSFLAYLLE-AETNEEKPQ-------DNLWLGIILALTCIVTGSLLSV 176 (207)
Q Consensus 136 ~~~~~~~ViR-~g~~~~i~~-------~~L~~~~~~~~~~~V~GDiv~l 176 (207)
.....+.|++ ||+....+. .++ -|||.|++
T Consensus 163 Ad~~~v~VI~~nG~v~~~~~a~Wn~~~~~l-----------~PG~~I~V 200 (236)
T 3p42_A 163 ADKNNVMVITPEGETVVAPVALWNKRHVEP-----------PPGSQLWL 200 (236)
T ss_dssp BCSSEEEEECTTSCEEEEECSSTTCCCEEC-----------CTTCEEEE
T ss_pred CCCccEEEEeCCCCEEeccccccccCCCCC-----------CCCCEEEE
Confidence 3456788888 687766653 357 99999999
No 17
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=22.29 E-value=35 Score=31.79 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=18.2
Q ss_pred eeccEEEEeccCCCCccc-ceeee
Q psy6873 169 VTGSLLSVQQKYSPRTPW-DLLNA 191 (207)
Q Consensus 169 V~GDiv~l~~~~Gd~iPa-D~~l~ 191 (207)
.+||.|.++ ++||+||- .+++.
T Consensus 380 ~iGD~V~V~-rAGdVIP~V~~vv~ 402 (615)
T 3sgi_A 380 LIGDTVVIR-KAGDVIPEVLGPVV 402 (615)
T ss_dssp CBTCEEEEE-CCSSSSCCCCEECT
T ss_pred CCCCEEEEE-EcCCCccceeeecc
Confidence 899999996 89999997 45554
No 18
>2l1t_A Uncharacterized protein; putative C-DI-GMP binding, GSU3033, PILZ, structural genomic biology, protein structure initiative; NMR {Geobacter sulfurreducens}
Probab=20.15 E-value=33 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.4
Q ss_pred eeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873 169 VTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG 204 (207)
Q Consensus 169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~ 204 (207)
+-+|++.+| =.+|.+|+|.++-.+..+.-|+...|
T Consensus 40 ~~~dli~lq-Lsrd~LP~~v~l~~G~~l~v~~~~g~ 74 (109)
T 2l1t_A 40 LKGSLAWLE-LFGAEQPPPNTLSEGAEVSVSVWTGG 74 (109)
T ss_dssp EETTEEEEC-CSSSCCCCTTTCCTTCEEEEEEEETT
T ss_pred ecCCEEEEE-eecccCCCceeEecccEEEEEEccCC
Confidence 678888884 68999999999888877766666554
Done!