RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6873
(207 letters)
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 103 bits (258), Expect = 1e-25
Identities = 47/119 (39%), Positives = 65/119 (54%)
Query: 4 AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
L +LK EV++D+H + L+EL T +GLS L +DGPN+L
Sbjct: 4 RDLDELKKEVEMDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEW 63
Query: 64 YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
+F GFS LLW GA+L FLAY ++A T EE DNL+LG++L+ I+T Y
Sbjct: 64 VKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSY 122
Score = 62.1 bits (151), Expect = 2e-11
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 123 IFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTG 171
+F GFS LLW GA+L FLAY ++A T EE DNL+LG++L+ I+TG
Sbjct: 70 LFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITG 118
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. This entry represents the conserved
N-terminal region found in several classes of
cation-transporting P-type ATPases, including those
that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the
H+/K+- and Na+/K+-exchange P-ATPases, this domain is
found in the catalytic alpha chain. In gastric
H+/K+-ATPases, this domain undergoes reversible
sequential phosphorylation inducing conformational
changes that may be important for regulating the
function of these ATPases.
Length = 75
Score = 65.7 bits (161), Expect = 1e-14
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 14 DIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRG 73
++D H + LEE+ L T ++GLS E RRLE+ GPN LP + + + +
Sbjct: 1 ELDWHALSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNP 60
Query: 74 FSALLWFGALLSFLA 88
+L A+LS L
Sbjct: 61 LIYILLAAAVLSALL 75
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. Members of this families are involved in
Na+/K+, H+/K+, Ca++ and Mg++ transport.
Length = 69
Score = 60.6 bits (148), Expect = 9e-13
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSA 76
H + +EE+ + L T ++GL+E E + RLEK GPN LP+K + I +
Sbjct: 1 WHTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVI 60
Query: 77 LLWFGALLS 85
+L A++S
Sbjct: 61 ILLIAAIVS 69
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport
and metabolism].
Length = 917
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/68 (41%), Positives = 36/68 (52%)
Query: 20 IPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLW 79
+ EL L T P GLSE EVKRRL+K GPN LP++ + + + + F LL
Sbjct: 28 VERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLL 87
Query: 80 FGALLSFL 87
ALLS
Sbjct: 88 VAALLSAF 95
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating
P-type ATPase found in a limited number of bacterial
species and best described in Salmonella typhimurium,
which contains two isoforms. These transporters are
active in low external Mg2+ concentrations and pump the
ion into the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 37.9 bits (88), Expect = 0.002
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 12 EVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIF 71
+ E + E L L H GL+ +EV RL + GPN ++ ++ N+ +L+
Sbjct: 10 NNLLKESQMGKETLLRKLGVHET-GLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFN 68
Query: 72 RGFSALLWFGALLSFLAYLLEA 93
F +L +S+L LEA
Sbjct: 69 NPFIYILAMLMGVSYLTDDLEA 90
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane
proton efflux P-type ATPase found in plants, fungi,
protozoa, slime molds and archaea. The best studied
representative is from yeast.
Length = 754
Score = 36.5 bits (85), Expect = 0.007
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 36 GLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSF 86
GL+ E K+RL K GPN LP+K + + +G+ + S ++ A+++
Sbjct: 1 GLTSAEAKKRLAKYGPNELPEKKV-SPLLKFLGFFWNPLSWVMEAAAIIAI 50
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 36.5 bits (85), Expect = 0.008
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 34/123 (27%)
Query: 21 PLEELYSILDTHPDRGLSELEVKRRLEKDGPN---------SLPQKYR-INNVYILVGYI 70
LEE + L+TH GL+E + RL++ GPN +L Q + NN +I V
Sbjct: 31 SLEETLANLNTHRQ-GLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYV--- 86
Query: 71 FRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSAL 130
L+ A+ F Y L EE D G+I+ LT + S L
Sbjct: 87 ------LMVLAAISFFTDYWLPLRRGEE--TD--LTGVIIILTMV----------LLSGL 126
Query: 131 LWF 133
L F
Sbjct: 127 LRF 129
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 35.0 bits (81), Expect = 0.022
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 23 EELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQ 56
EEL+ DTHP+ GL+E EV+ E+ G N LP
Sbjct: 55 EELWKTFDTHPE-GLNEAEVESAREQHGENELPA 87
>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C. This family of
short membrane proteins are as yet uncharacterized.
Length = 96
Score = 31.8 bits (73), Expect = 0.060
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 29/99 (29%)
Query: 105 WLGIILALTCIVTVLVGYIFRG----FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLG 160
GI A + ++GY G A L FGALL + AYLL N G
Sbjct: 2 HPGIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLL---------SQNQPYG 52
Query: 161 IILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSR 199
+ LAL + + L V G RYI +R
Sbjct: 53 LELAL--LASAVLAGV--------------MGPRYIKTR 75
>gnl|CDD|110745 pfam01769, MgtE, Divalent cation transporter. This region is the
integral membrane part of the eubacterial MgtE family of
magnesium transporters. Related regions are found also
in archaebacterial and eukaryotic proteins. All the
archaebacterial and eukaryotic examples have two copies
of the region. This suggests that the eubacterial
examples may act as dimers. Members of this family
probably transport Mg2+ or other divalent cations into
the cell. The alignment contains two highly conserved
aspartates that may be involved in cation binding
(Bateman A unpubl.).
Length = 135
Score = 31.1 bits (71), Expect = 0.17
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 61 NNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLV 120
+ + +L+ + G + GALL +A L L +A + ++++
Sbjct: 33 DRLKVLLKELSTGLLLSVVVGALLGVVAVLFAGIFFFILEGGATLLAFFVASSLFASLVL 92
Query: 121 GYIFRGFSALLWFGALLSFLAYLL 144
I G L+ L L
Sbjct: 93 ATIL---------GVLIPILFKKL 107
>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 31.5 bits (72), Expect = 0.25
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 102 DNLWLGIILALTCIVTVLVGYIFR---------GFSALLWFGALLSFLAYLLEAETNEEK 152
+G+ ALT ++G + +A+LW L +
Sbjct: 210 APEAIGLFFALTVGFLAILGVLLELHLPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQL 269
Query: 153 PQDNLWLGIILALTCIVTGSLL 174
N+W+G +L L ++ GSLL
Sbjct: 270 FLQNVWIGFLL-LAGMILGSLL 290
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 31.1 bits (71), Expect = 0.40
Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 37/145 (25%)
Query: 57 KYRINNVYILV-----------GYIFRGFSALLWFGA----LLSFLAYLLEAETNEEKPQ 101
K ++ +L+ ++ GF A +WF L SFL LL AE Q
Sbjct: 303 KEKLLFALLLLFLILSFYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQ 362
Query: 102 DNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGI 161
IL ++ +L +F L ++ Q NL L +
Sbjct: 363 LKKLK--ILISILLLVLLFILVF-----------------LLNLSKHYSFLTQTNLLLTL 403
Query: 162 ILALTCIVTGSLLSVQQKYSPRTPW 186
+ ++ LL + K R
Sbjct: 404 LFL---LLYLLLLLLFLKKQIRKKL 425
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 31.1 bits (71), Expect = 0.41
Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 21/99 (21%)
Query: 106 LGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDN--------- 156
L IL I T++ G + F FG L E E P +
Sbjct: 392 LLKILIYLGISTIIWGLLTGSF-----FGFSLPIFLPGGYLELPEGYPSLSTENDVMTIL 446
Query: 157 ---LWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAG 192
L +G+I + G LL D A
Sbjct: 447 IISLLIGVIH----LFLGLLLGFINNVRKGDYKDAFLAQ 481
>gnl|CDD|222300 pfam13664, DUF4149, Domain of unknown function (DUF4149).
Length = 98
Score = 29.1 bits (66), Expect = 0.48
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 104 LWLGIILALTCIVT-------------VLVGYIFRGFSALLWFGALLSFLAYLLEAETNE 150
LWLG L + +V L G +F + L A+L L LL E
Sbjct: 5 LWLGGQLFVGFVVAPVLFKALPREQAGALQGKLFPVYFLLGLALAVLLLLTELLLGGKAE 64
Query: 151 EKPQDNLWLGIILALTCIVT 170
L L ++L LT +
Sbjct: 65 --RWQLLLLAVLLLLTLLNL 82
>gnl|CDD|240532 cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides and participate in the biosynthesis
of cell wall components such as teichuronic acid. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 406
Score = 30.1 bits (69), Expect = 0.75
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 70 IFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSA 129
I + + F L S LL A + L LG+I A+ ++ +L+G + G
Sbjct: 318 ILQILALAGLFQPLSSLNGSLLLA-LG--RTDLLLKLGLIKAVLTVLALLIGIPY-GIIG 373
Query: 130 LLWFGALLSFLAYLL 144
+ + S L++ L
Sbjct: 374 VAIAYVIASLLSFPL 388
>gnl|CDD|227433 COG5102, SFT2, Membrane protein involved in ER to Golgi transport
[Intracellular trafficking and secretion].
Length = 201
Score = 29.5 bits (66), Expect = 0.89
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 69 YIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFS 128
+ +L FG LL F AYL + E P + + G T ++T+ V ++
Sbjct: 103 WTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSSWFFG-----TTLLTIYVVLKYKRTL 157
Query: 129 ALLWFGAL--LSFLAYLL 144
+ F L +SF+ Y +
Sbjct: 158 LNIAFCFLQVVSFIMYSI 175
>gnl|CDD|217911 pfam04123, DUF373, Domain of unknown function (DUF373). Archaeal
domain of unknown function. Predicted to be an integral
membrane protein with six transmembrane regions.
Length = 344
Score = 29.9 bits (68), Expect = 0.93
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 57 KYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIV 116
K + + G L AL++FL L++ N LW I A
Sbjct: 249 KLSAISAGGVAATFLNGAVPWLALAALIAFLGKLIDEYLNGRF---RLW-RYINAP--FF 302
Query: 117 TVLVGYIFRGFSALLWFGAL----LSFLAYLL 144
+ +G + G S L +S+LA +
Sbjct: 303 VLAIGLVVYGLSGYFLSIELALTSISYLAISI 334
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 29.6 bits (67), Expect = 1.0
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 55 PQKYRINNVYILVGYIF-------RGFSALLWFGALLSFLAYLL 91
P K ++ N VG ++ G A+L+ G++++FL + L
Sbjct: 381 PSKAKVANFIAFVGALYSFYALYSSGEEAMLY-GSIVTFLGWTL 423
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase. The members
of this family are membrane proteins. In some proteins
this region is found associated with pfam02225. This
family corresponds with Merops subfamily A22B, the type
example of which is signal peptide peptidase. There is a
sequence-similarity relationship with pfam01080.
Length = 291
Score = 29.6 bits (67), Expect = 1.1
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 56 QKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLG-------- 107
K IN+V +L GY A+ +L L P+ L
Sbjct: 36 SKEYINSVLVLTGYFCIL-GAIALAFLILPPCIRRLSFMGAYRFPKKKSKLELKNGRFTY 94
Query: 108 --IILALTCIVTVLVGYIFRGFSALL 131
++ L CIV + Y+ R +L
Sbjct: 95 SELVALLLCIVFAVWWYVLRKEHWIL 120
>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 29.6 bits (67), Expect = 1.2
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 100 PQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQD---- 155
+ L L ++L L + VL+G + + G L++ L L + + +
Sbjct: 209 IKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFA 268
Query: 156 ----NLWLGIILALTCIV 169
NL LG++L + I+
Sbjct: 269 LFDVNLLLGLLLFIGLIL 286
>gnl|CDD|217177 pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin
resistance protein (BacA) is a putative undecaprenol
kinase. BacA confers resistance to bacitracin, probably
by phosphorylation of undecaprenol.
Length = 255
Score = 29.3 bits (67), Expect = 1.2
Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 35/134 (26%)
Query: 65 ILVGYIFRG-------FSALLWFGALLSFLAYL----------LEAETNEEKPQDNLWLG 107
ILV ++ F ++ G +L+ L Y L +KP L L
Sbjct: 24 ILVSHLLGWDSDPGLAFDVVIQLGTILAVLVYFRKDILRLLRGLLRSLRRDKPDRRLLLL 83
Query: 108 IILALTCIVTVLVGYIFRGF------------SALLWFGALLSFLAYLLEAETNEEK--P 153
II+ I +VG +F+ F AL+ G LL L + +
Sbjct: 84 IIIG--TIPAGVVGLLFKDFIEALLRSPVVIAIALIVGGLLLLLAERLGKKRRTLDDISL 141
Query: 154 QDNLWLGI--ILAL 165
+D L +G+ LAL
Sbjct: 142 KDALLIGLAQALAL 155
>gnl|CDD|219119 pfam06645, SPC12, Microsomal signal peptidase 12 kDa subunit
(SPC12). This family consists of several microsomal
signal peptidase 12 kDa subunit proteins. Translocation
of polypeptide chains across the endoplasmic reticulum
(ER) membrane is triggered by signal sequences.
Subsequently, signal recognition particle interacts with
its membrane receptor and the ribosome-bound nascent
chain is targeted to the ER where it is transferred into
a protein-conducting channel. At some point, a second
signal sequence recognition event takes place in the
membrane and translocation of the nascent chain through
the membrane occurs. The signal sequence of most
secretory and membrane proteins is cleaved off at this
stage. Cleavage occurs by the signal peptidase complex
(SPC) as soon as the lumenal domain of the translocating
polypeptide is large enough to expose its cleavage site
to the enzyme. The signal peptidase complex is possibly
also involved in proteolytic events in the ER membrane
other than the processing of the signal sequence, for
example the further digestion of the cleaved signal
peptide or the degradation of membrane proteins.
Mammalian signal peptidase is as a complex of five
different polypeptide chains. This family represents the
12 kDa subunit (SPC12).
Length = 76
Score = 27.6 bits (62), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 108 IILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLL 144
II+ + +++ +VGYI + FS ++ G + L LL
Sbjct: 15 IIILIFAVISFIVGYITQDFSLTVYIGLAGTALTLLL 51
>gnl|CDD|224920 COG2009, SdhC, Succinate dehydrogenase/fumarate reductase,
cytochrome b subunit [Energy production and conversion].
Length = 132
Score = 28.5 bits (64), Expect = 1.2
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 58 YRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVT 117
+RI+ V + A W SF A ++ ++ L +V
Sbjct: 24 HRISGVILAFFLFVHILLASSWLAGSASFNAAFEFYHA-----LLGSFIVKLV-LLGLVL 77
Query: 118 VLVGYIFRGFSALLW-FGALLSFLAY 142
L+ + G LLW FG L
Sbjct: 78 ALLYHGLNGIRHLLWDFGYGLELKGV 103
>gnl|CDD|217530 pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The
2-hydroxycarboxylate transporter family is a family of
secondary transporters found exclusively in the
bacterial kingdom. They function in the metabolism of
the di- and tricarboxylates malate and citrate, mostly
in fermentative pathways involving decarboxylation of
malate or oxaloacetate.
Length = 414
Score = 29.4 bits (67), Expect = 1.3
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 128 SALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWD 187
SAL+++G L +++A T K + L+ I C++TGS+L + +K
Sbjct: 70 SALVYYGLLPE---NVVKAVTEFMKSGNFLYFYI----ACLITGSILGMNRKL------- 115
Query: 188 LLNAGVRYIP 197
L+ +RYIP
Sbjct: 116 LIKGFLRYIP 125
>gnl|CDD|219576 pfam07786, DUF1624, Protein of unknown function (DUF1624). These
sequences are found in hypothetical proteins of unknown
function expressed by bacterial and archaeal species.
The region in question is approximately 230 residues
long.
Length = 222
Score = 29.1 bits (66), Expect = 1.3
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 73 GFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCI-VTVLVGYIFRGFSALL 131
+ L G + A L+ A T P ++ GI L I + L+G F
Sbjct: 68 RWRKFLKRGLKIFAAALLITAATYIVFPDSFIYFGI---LHFIGLASLLGLPFLRLPKWN 124
Query: 132 WFGALLSFLAYLLEAETNEEKPQDNLWLGII 162
L FLA + + LWLG+
Sbjct: 125 LLLGALLFLALGIFLRSPTFDTPLLLWLGLS 155
Score = 26.8 bits (60), Expect = 6.8
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 65 ILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGII 109
L+G F L FLA + + LWLG+
Sbjct: 111 SLLGLPFLRLPKWNLLLGALLFLALGIFLRSPTFDTPLLLWLGLS 155
>gnl|CDD|184756 PRK14584, hmsS, hemin storage system protein; Provisional.
Length = 153
Score = 28.6 bits (64), Expect = 1.5
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 73 GFSALLWFGALLSFLAYLLEAETNEEKPQDN-LWLGIILALTCIVTVLVGYIFRGFSALL 131
+AL WFG L + LLE + L + I+ LT I L F ++
Sbjct: 20 ILTALAWFGFLFLLVRGLLEMISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNAVLLII 79
Query: 132 WF 133
W
Sbjct: 80 WA 81
>gnl|CDD|133466 cd06856, GT_GPT_archaea, UDP-GlcNAc:dolichol-P GlcNAc-1-P
transferase (GPT)-like proteins in archaea. Eukaryotic
GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc
to dolichol-P to form GlcNAc-P-P-dolichol. The reaction
is the first step in the assembly of dolichol-linked
oligosaccharide intermediates and is essential for
eukaryotic N-linked glycosylation. Evidence for the
existence of the N-glycosylation pathway in archaea has
emerged and genes responsible for the pathway have been
identified. A glycosyl transferase gene Mv1751 in M.
voltae encodes for the enzyme that carries out the first
step in the pathway, the attachment of GlcNAc to a
dolichol lipid carrier in the membrane. A lethal
mutation in the alg7 (GPT) gene in Saccharomyces
cerevisiae was successfully complemented with Mv1751,
the archaea gene, indicating that eukaryotic and
archaeal enzymes may use the same substrates and are
evolutionarily closer than the bacterial enzyme, which
uses a different substrate.
Length = 280
Score = 29.1 bits (66), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 108 IILALTCIVTVLVGYIFRGFSALLWFGALLSFLAY 142
IIL I+ ++ G AL+ ALL+FL Y
Sbjct: 134 IILLALAIILLINGDYDALIIALILVAALLAFLLY 168
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 29.1 bits (65), Expect = 1.6
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 107 GIILALTCIVTVLVGYIFRG---FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIIL 163
+I+ L + T L+ + S L G LL+ LL LG++L
Sbjct: 100 SLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLL-ILLGGGGGGILSLLGLLL 158
Query: 164 ALTCIVTGSLLSVQQKYSPRTP 185
AL + +L + K R
Sbjct: 159 ALAAALLWALYTALVKRLSRLG 180
Score = 27.1 bits (60), Expect = 5.8
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 63 VYILVGYIFRG--FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLV 120
+L + G S L G LL+ LL LG++LAL + +
Sbjct: 110 TALLAVLLLLGERLSLLQILGILLALAGVLL-ILLGGGGGGILSLLGLLLALAAALLWAL 168
Query: 121 GYIF-------RGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTG 171
+ L LL+ L LL + P + ++L L TG
Sbjct: 169 YTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTG 226
>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. Members of this family use
proteolytic activity within the membrane to transfer
information across membranes to integrate gene
expression with physiologic stresses occurring in
another cellular compartment. The domain core structure
appears to contain at least three transmembrane helices
with a catalytic zinc atom coordinated by three
conserved residues contained within the consensus
sequence HExxH, together with a conserved aspartate
residue. The S2P/M50 family of RIP proteases is widely
distributed; in eukaryotic cells, they regulate such
processes as sterol and lipid metabolism, and
endoplasmic reticulum (ER) stress responses. In
sterol-depleted mammalian cells, a two-step proteolytic
process releases the N-terminal domains of sterol
regulatory element-binding proteins (SREBPs) from
membranes of the ER. These domains translocate into the
nucleus, where they activate genes of cholesterol and
fatty acid biosynthesis. It is the second proteolytic
step that is carried out by the SREBP Site-2 protease
(S2P) which is present in this CD superfamily.
Prokaryotic S2P/M50 homologs have been shown to regulate
stress responses, sporulation, cell division, and cell
differentiation. In Escherichia coli, the S2P homolog
RseP is involved in the sigmaE pathway of
extracytoplasmic stress responses, and in Bacillus
subtilis, the S2P homolog SpoIVFB is involved in the
pro-sigmaK pathway of spore formation. Some of the
subfamilies within this hierarchy contain one or two PDZ
domain insertions, with putative regulatory roles, such
as the inhibition of substrate cleavage as seen by the
RseP PDZ domain.
Length = 180
Score = 28.7 bits (65), Expect = 1.7
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 103 NLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGII 162
NL L ++L L ++ + G +A LL+FLA + NL L +
Sbjct: 86 NLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLLAFLALI------------NLNLAVF 133
>gnl|CDD|219137 pfam06687, SUR7, SUR7/PalI family. This family consists of several
fungal-specific SUR7 proteins. Its activity regulates
expression of RVS161, a homologue of human endophilin,
suggesting a function for both in endocytosis. The
protein carries four transmembrane domains and is thus
likely to act as an anchoring protein for the eisosome
to the plasma membrane. Eisosomes are the immobile
protein complexes, that include the proteins Pil1 and
Lsp1, which co-localise with sites of protein and lipid
endocytosis at the plasma membrane. SUR7 protein may
play a role in sporulation. This family also includes
PalI which is part of a pH signal transduction cascade.
Based on the similarity of PalI to the yeast Rim9
meiotic signal transduction component it has been
suggested that PalI might be a membrane sensor for
ambient pH.
Length = 205
Score = 28.8 bits (65), Expect = 1.7
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 104 LWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLL 144
+ + + ++ + F LLS LA+L
Sbjct: 116 HPIALFFTVIALILAGILAHFSSPRRGSLVNFLLSLLAFLF 156
>gnl|CDD|148632 pfam07136, DUF1385, Protein of unknown function (DUF1385). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 300 residues
in length. Some family members are predicted to be
metal-dependent.
Length = 235
Score = 28.7 bits (65), Expect = 1.8
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 70 IFRGFSAL---LWFGAL-LSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
RG AL L G L+F A + E E+ + + L +IL+L
Sbjct: 3 FLRGIVALFESLVLGIKALNFSAEFADEEEEEKLSKWEMALTVILSL------------- 49
Query: 126 GFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGII 162
F+ L F L +FLA L + NL G+I
Sbjct: 50 AFAIGL-FFVLPTFLASLFKPLIPGGVLF-NLIEGVI 84
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA
based on a phylogenetic analysis which distinguishes
this group from the Type IIB PMCA calcium pump modelled
by TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 20 IPLEELYSILDTHPDRGLSEL-EVKRRLEKDGPNSLPQ 56
+ +EE S L T GL+ E R G N
Sbjct: 7 LSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDV 44
>gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX
family. RhtX from Sinorhizobium meliloti 2011 and FptX
from Pseudomonas aeruginosa appear to be single
polypeptide transporters, from the major facilitator
family (see pfam07690) for import of siderophores as a
means to import iron. This function was suggested by
proximity to siderophore biosynthesis genes and then
confirmed by study of knockout and heterologous
expression phenotypes [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 390
Score = 28.7 bits (64), Expect = 2.0
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 19/80 (23%)
Query: 105 WLGIILALTCIVTVLVGY-----------IFRGFSALLWFGALLSFLAYLLEAETNEEKP 153
W+G + VTVL+G ++R F + L+ L + A
Sbjct: 244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF------ 297
Query: 154 QDNLWLGIILALTCIVTGSL 173
L GI +A +C GSL
Sbjct: 298 --WLAPGIAVAWSCSAFGSL 315
>gnl|CDD|224899 COG1988, COG1988, Predicted membrane-bound metal-dependent
hydrolases [General function prediction only].
Length = 190
Score = 28.6 bits (64), Expect = 2.0
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 56 QKYRINNVYILVGYIFRGFSALLWFGALLSFL-AYLLEAETNEEKPQDNLWLGIILALTC 114
K ++YI +G+ RGF+ L F A+ L LL +D L LG+ L +
Sbjct: 51 LKLPDISLYIRLGH--RGFTHSLLFAAVALLLLGLLLFLFFLPLIFKD-LLLGLFLGVFS 107
Query: 115 IVTVLVGYIFRGFSALLW 132
+L+ + LLW
Sbjct: 108 H--ILLDALTTAGVPLLW 123
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 28.8 bits (65), Expect = 2.1
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 95 TNEEKPQDNLWLGIILALTCIV--TVLVGYIFRGFSALLWF-GALL-SFLAYLLEAE--- 147
K L ++ + +V T L+ L GA + L ++L
Sbjct: 307 GASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHL 366
Query: 148 ---TNEEKPQDNLWLGIILALTCIVTGSLLSV 176
++K + LW IL + CIV G LL
Sbjct: 367 KLKKTKKKSLEKLWKPDILDVICIVIGLLLMA 398
>gnl|CDD|219026 pfam06432, GPI2, Phosphatidylinositol
N-acetylglucosaminyltransferase.
Glycosylphosphatidylinositol (GPI) represents an
important anchoring molecule for cell surface proteins.
The first step in its synthesis is the transfer of
N-acetylglucosamine (GlcNAc) from
UDP-N-acetylglucosamine to phosphatidylinositol (PI).
This step involves products of three or four genes in
both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG
A, PIG H and PIG C), respectively.
Length = 268
Score = 28.3 bits (64), Expect = 2.3
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 110 LALTCIVTVLVGYIFRGF---SALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALT 166
++ + ++ YI++G +LL L L Y+L + + + AL
Sbjct: 49 ISNVVLFLLVFVYIYQGRVSPESLLLVSLGLLLLGYVLWDLVDGGGSLLHRLSDLKSALL 108
Query: 167 CIVTGSLLS 175
LLS
Sbjct: 109 ITFFLLLLS 117
>gnl|CDD|206279 pfam14110, DUF4282, Domain of unknown function (DUF4282). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 93 and 155
amino acids in length. There is a single completely
conserved residue E that may be functionally important.
Length = 89
Score = 27.1 bits (61), Expect = 2.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 105 WLGIIL-ALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLL 144
WLG+IL L + + G +S ALL L
Sbjct: 19 WLGLILIGLFGLSGLFGGLATMAYSPGGGLLALLLGPLGFL 59
>gnl|CDD|176489 cd08554, Cyt_b561, Eukaryotic cytochrome b(561). Cytochrome b(561)
is a family of endosomal or secretory vesicle-specific
electron transport proteins. They are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments. This
is an exclusively eukaryotic family. Members of the
prokaryotic cytochrome b561 family are not deemed
homologous.
Length = 131
Score = 27.6 bits (62), Expect = 2.4
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 65 ILVGYIFRGFS---------ALLWFGALLSFLAYLLEAETNEEKPQDNL-----WLGIIL 110
+LV +FR + L +L + L + NL WLG+
Sbjct: 21 LLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLAT 80
Query: 111 ALTCIVTVLVG---YIFRGF-----SALLWFGALLSFLAYLL 144
L ++ L G ++ S+LL F ++L
Sbjct: 81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVL 122
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 28.3 bits (64), Expect = 2.6
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 104 LWLGIILALTCIVTVLV---GYIFRGFSALLWFG-----ALLSFLAYLLEAETNEEKPQD 155
L + L LT V LV + + L W G ALL F+ L +
Sbjct: 9 GLLALGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAA 68
Query: 156 NLWLGIILALTCIVTGSLLSV 176
L + L + G +L V
Sbjct: 69 LALLFLFTLLEGLTLGPILLV 89
>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter. The 10-12 TMS
Nucleotide Sugar Transporters (TC
2.A.7.10)Nucleotide-sugar transporters (NSTs) are found
in the Golgi apparatus and the endoplasmic reticulum of
eukaryotic cells. Members of the family have been
sequenced from yeast, protozoans and animals. Animals
such as C. elegans possess many of these transporters.
Humans have at least two closely related isoforms of the
UDP-galactose:UMP exchange transporter.NSTs generally
appear to function by antiport mechanisms, exchanging a
nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid
is exchanged for CMP; GDP-mannose is preferentially
exchanged for GMP, and UDP-galactose and
UDP-N-acetylglucosamine are exchanged for UMP (or
possibly UDP). Other nucleotide sugars (e.g.,
GDP-fucose, UDP-xylose, UDP-glucose,
UDP-N-acetylgalactosamine, etc.) may also be transported
in exchange for various nucleotides, but their
transporters have not been molecularly characterized.
Each compound appears to be translocated by its own
transport protein. Transport allows the compound,
synthesized in the cytoplasm, to be exported to the
lumen of the Golgi apparatus or the endoplasmic
reticulum where it is used for the synthesis of
glycoproteins and glycolipids.
Length = 222
Score = 28.1 bits (63), Expect = 2.6
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 71 FRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGF--S 128
F G+ +W LL+ L + DN + AL+ I++ L S
Sbjct: 148 FIGYPTAVWIVGLLNVGGGLCIGGVV--RYADNTTKSFVTALSIILSTLASVRLFDAKIS 205
Query: 129 ALLWFGALLSFLAYLL 144
+ + GA+L FLA L
Sbjct: 206 STFYLGAILVFLATFL 221
>gnl|CDD|216941 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family
corresponds to the beta subunit of NADP transhydrogenase
in prokaryotes, and either the protein N- or C terminal
in eukaryotes. The domain is often found in conjunction
with pfam01262. Pyridine nucleotide transhydrogenase
catalyzes the reduction of NAD+ to NADPH. A complete
loss of activity occurs upon mutation of Gly314 in E.
coli.
Length = 464
Score = 28.5 bits (64), Expect = 2.7
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 103 NLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEA 146
NL L + L +V + G ALL A+ L + L A
Sbjct: 164 NLALLAVSVLLLVVFMRSESPGTGMLALLLMTAISLVLGWHLVA 207
>gnl|CDD|217024 pfam02417, Chromate_transp, Chromate transporter. Members of this
family probably act as chromate transporters. Members of
this family are found in both bacteria and
archaebacteria. The proteins are composed of one or two
copies of this region. The alignment contains two
conserved motifs, FGG and PGP.
Length = 169
Score = 27.9 bits (63), Expect = 2.8
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 37/132 (28%)
Query: 50 GPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGII 109
GPN++ N+ +GY G + GAL++ L + L P
Sbjct: 55 GPNAI-------NLATFIGYRLAG-----FLGALVATLGFFL--------P--------- 85
Query: 110 LALTCIVTVLVGYIFRGFSALLWFGALLSFLAY-----LLEAETNEEKPQDNLWLGIILA 164
+ ++ +L+ +++ F W A L+ + +L A + K L + +A
Sbjct: 86 ---SFLLILLLAPLYKRFKDSPWVQAFLAGVKPAVVGLILAAAISLAKKAVKDPLSLAIA 142
Query: 165 LTCIVTGSLLSV 176
+ + +
Sbjct: 143 ALAFLLLAFFKL 154
>gnl|CDD|217412 pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD
proteins from a number of bacteria, in Salmonella this
protein is called Cbib. Salmonella CobD is a different
protein. This protein is involved in cobalamin
biosynthesis and is probably an enzyme responsible for
the conversion of adenosylcobyric acid to
adenosylcobinamide or adenosylcobinamide phosphate.
Length = 295
Score = 28.2 bits (64), Expect = 2.9
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 79 WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLS 138
W G L+S+L E N L ++ L + L+G LL L
Sbjct: 26 WIGRLISWL----ERRLNRGSAARRLAGALLWLLLVLPAALLGA------LLLALAGLHP 75
Query: 139 FLAYLLEA 146
L ++EA
Sbjct: 76 LLGLIVEA 83
>gnl|CDD|223633 COG0559, LivH, Branched-chain amino acid ABC-type transport system,
permease components [Amino acid transport and
metabolism].
Length = 297
Score = 28.3 bits (64), Expect = 3.0
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 63 VYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
VY ++ I GA ++LA L P L L + L L +T L+G
Sbjct: 30 VYGVLRVINFAHGEFFMLGAYAAYLAVALL------GPLGALGLLLALPLAFAITALIGL 83
Query: 123 IF-RG-FSALLWFGALLSFLA 141
+ R L AL +A
Sbjct: 84 LIERLVLRPLRGRPALALLIA 104
>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
Length = 420
Score = 28.4 bits (64), Expect = 3.3
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 74 FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVG------Y---IF 124
LLW L L +E + W GI+L TC++ +V Y +
Sbjct: 317 LILLLWLIGQLVPLPPNIEVYS----FSLPHWSGILLTFTCLLQFIVSLFIDRRYEKGLL 372
Query: 125 RGFSALLWF 133
R ++W+
Sbjct: 373 RYLFWVIWY 381
Score = 27.6 bits (62), Expect = 5.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 104 LWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIIL 163
+W L I+++L Y LLW L L +E + W GI+L
Sbjct: 298 MW---PLFFEYILSILWAYTML-LILLLWLIGQLVPLPPNIEVYS----FSLPHWSGILL 349
Query: 164 ALTCIV 169
TC++
Sbjct: 350 TFTCLL 355
>gnl|CDD|223467 COG0390, COG0390, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 256
Score = 28.1 bits (63), Expect = 3.5
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 115 IVTVLVGYIFR---GFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTG 171
I+ ++ YIF LL +L+ AY +++ + + + + + ++ +V
Sbjct: 49 ILGFVLSYIFALDNPALTLLMVLVMLTIAAYNARKRLSKKILKLFILVFLAIFVSTLVYL 108
Query: 172 SLLSVQ--QKYSPR 183
+L ++ + PR
Sbjct: 109 LVLVLRGRIWFEPR 122
>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion
transport and metabolism].
Length = 443
Score = 28.1 bits (63), Expect = 3.6
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 116 VTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLS 175
LV + ALL G L T D L L ++L + + G LLS
Sbjct: 195 YRALVPVLVAAVVALLVAGLFGGPHFLLPIVTTPHMSLWD-LLLYLVLGIIAGLFGVLLS 253
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 27.9 bits (63), Expect = 4.0
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 103 NLWLGII-LALTCIVTV-LVGYIFR---GFSALLWFGALLSFLAYLLEAETNEEKPQDNL 157
+L+L + L + + L+G + AL + ++ + P
Sbjct: 398 DLFLKLTGLFGGGLAGLFLLGIFTKRANNRGALAGIIVSVLVTFWISLSTGALYTPIHFY 457
Query: 158 WLGIILALTCIVTGSLLS 175
G+I L C V G L+S
Sbjct: 458 LYGVIGILVCFVVGYLVS 475
>gnl|CDD|224749 COG1836, COG1836, Predicted membrane protein [Function unknown].
Length = 247
Score = 27.6 bits (62), Expect = 4.1
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 62 NVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVG 121
+ Y+ I ALL L LAY +A G + A+ L+G
Sbjct: 2 SEYVTQMAIDPLLLALL-LILFLGALAYKAKALDLS---------GSLSAI------LLG 45
Query: 122 YIFRGFSALLWFGALLSFLA 141
+ F WF LL F A
Sbjct: 46 ALIIVFGGFKWFLLLLIFFA 65
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of
this protein family are salicylate 1-monooxygenase, also
called salicylate hydroxylase. This enzyme converts
salicylate to catechol, which is a common intermediate
in the degradation of a number of aromatic compounds
(phenol, toluene, benzoate, etc.). The gene for this
protein may occur in catechol degradation genes, such as
those of the meta-cleavage pathway.
Length = 414
Score = 27.9 bits (62), Expect = 4.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1 MDVAQLRDLKNEVDIDEHLIPLEELYSILDTH 32
+D QLR+ +DEHL+ + ++Y LD H
Sbjct: 188 VDSLQLREAYRAAGLDEHLVDVPQMYLGLDGH 219
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 28.1 bits (63), Expect = 4.6
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 38 SELEVKRRLEKDGPNSLPQKYRINNV 63
SE+ + RRL +DG + Y IN
Sbjct: 96 SEISITRRLYRDGESE----YFINGQ 117
>gnl|CDD|152110 pfam11674, DUF3270, Protein of unknown function (DUF3270). This
family of proteins with unknown function appears to be
restricted to Streptococcus.
Length = 90
Score = 26.2 bits (58), Expect = 4.8
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 110 LALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLL 144
+A+ CI TVL +I +F L+ L
Sbjct: 45 IAVFCITTVLFSFILLSLKLTTFFAFPLAITISLG 79
>gnl|CDD|151381 pfam10934, DUF2634, Protein of unknown function (DUF2634). Some
members in this family of proteins are annotated as
phage related, xkdS however currently there is no known
function.
Length = 112
Score = 26.5 bits (59), Expect = 5.6
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 24 ELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
EL ++ + E EVKR +E+ +L RI +V
Sbjct: 52 ELEDLIGKIYSKDYVESEVKRMIEE----ALLVDPRIKDVDNFE 91
>gnl|CDD|216818 pfam01970, TctA, Tripartite tricarboxylate transporter TctA family.
This family, formerly known as DUF112, is a family of
bacterial and archaeal tripartite tricarboxylate
transporters of the extracytoplasmic solute binding
receptor-dependent transporter group of families,
distinct from the ABC and TRAP-T families. TctA is part
of the tripartite TctABC system which, as characterized
in S. typhimurium, is a secondary carrier that depends
for activity on the extracytoplasmic
tricarboxylate-binding receptor TctC as well as two
integral membrane proteins, TctA and TctB. complete
three-component systems are found only in bacteria. TctA
is a large transmembrane protein with up to 12 predicted
membrane spanning regions in bacteria and up to 11 such
in archaea, with the N-terminal within the cytoplasm.
TctA is thought to be a permease, and in most other
bacteria functions without TctB and TctC molecules.
Length = 418
Score = 27.0 bits (61), Expect = 7.0
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 76 ALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGA 135
L+ +L+ +A P + L +L LT I ++ G + +G A L G
Sbjct: 109 LLILLAPVLAKVALKF-------GPAEYFAL-ALLGLTLIASLSGGSLLKGLIAAL-LGL 159
Query: 136 LLSFL 140
LL +
Sbjct: 160 LLGTV 164
>gnl|CDD|185747 cd09234, V_HD-PTP_like, Protein-interacting V-domain of mammalian
His-Domain type N23 protein tyrosine phosphatase and
related domains. This family contains the V-shaped (V)
domain of mammalian His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23) and related
domains. It belongs to the V_Alix_like superfamily which
includes the V domains of Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, mammalian Alix
(apoptosis-linked gene-2 interacting protein X/ also
known as apoptosis-linked gene-2 interacting protein 1,
AIP1), and related domains. HD_PTP interacts with the
ESCRT (Endosomal Sorting Complexes Required for
Transport) system, and participates in cell migration
and endosomal trafficking. The related Alix V-domain
(belonging to a different family in this superfamily)
contains a binding site, partially conserved in the
superfamily, for the retroviral late assembly (L) domain
YPXnL motif. The Alix V-domain is also a dimerization
domain. In addition to the V-domain, HD_PTP also has an
N-terminal Bro1-like domain, a proline-rich region
(PRR), a catalytically inactive tyrosine phosphatase
domain, and a region containing a PEST motif. Bro1-like
domains bind components of the ESCRT-III complex,
specifically to CHMP4 in the case of HD-PTP. The
Bro1-like domain of HD-PTP can also bind human
immunodeficiency virus type 1 (HIV-1) nucleocapsid.
HD-PTP is encoded by the PTPN23 gene, a tumor suppressor
gene candidate frequently absent in human kidney,
breast, lung, and cervical tumors. This family also
contains Drosophila Myopic, which promotes epidermal
growth factor receptor (EGFR) signaling, and
Caenorhabditis elegans (enhancer of glp-1) EGO-2 which
promotes Notch signaling.
Length = 337
Score = 26.9 bits (60), Expect = 7.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 3 VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEK 48
QLRD +E DI L+ T + +L K L+K
Sbjct: 211 EQQLRDAIHEDDITSKLV----------TTTGGDMEDLF-KEELKK 245
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 26.8 bits (60), Expect = 8.4
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 30/124 (24%)
Query: 65 ILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIF 124
+L+ Y+ + + G LL + Y+L ++L + I +L ++
Sbjct: 227 LLLLYLLNALAMAVRNGLLLYYFTYVLGNAG---------LFSVLLLIGTIAAILGAPLW 277
Query: 125 ----------RGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLL 174
R F + A+ L + L P +LWL ++L ++ G L
Sbjct: 278 PWLAKRFGKKRTFLLGMLLAAIGLVLLFFL--------PPGSLWLFLVL---VVLAGIGL 326
Query: 175 SVQQ 178
+
Sbjct: 327 GLAT 330
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.142 0.432
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,134,728
Number of extensions: 1088979
Number of successful extensions: 1952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1884
Number of HSP's successfully gapped: 265
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)