RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6873
(207 letters)
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 119 bits (300), Expect = 2e-31
Identities = 49/120 (40%), Positives = 67/120 (55%)
Query: 4 AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
L +LK EV +D+H + L+EL++ T RGL+ K L +DGPNSL
Sbjct: 35 RDLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEW 94
Query: 64 YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
+F GFS LLW GA+L FLAY ++A T +E DNL+LG++L+ IVT Y
Sbjct: 95 IKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYY 154
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 115 bits (289), Expect = 7e-30
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 4 AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
+L ++K E++I++H + + EL T +GLS L +DGPN+L
Sbjct: 40 EKLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEY 99
Query: 64 YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
+ G L+W A + +A+ ++A + DNL+L + L +VT GY
Sbjct: 100 VKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYY 159
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 64.6 bits (158), Expect = 1e-12
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 4 AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
+ L D+KNE +D IP+EE++ L + GL+ E + R++ GPN L +K + + +
Sbjct: 2 SSLEDIKNET-VDLEKIPIEEVFQQLKCSRE-GLTTQEGEDRIQIFGPNKLEEK-KESKL 58
Query: 64 YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
+G+++ S ++ A+++ + P D I+ L ++ + +I
Sbjct: 59 LKFLGFMWNPLSWVMEMAAIMAIALANGDGR-----PPDWQDFVGIICLL-VINSTISFI 112
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 61.1 bits (149), Expect = 2e-11
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 23/116 (19%)
Query: 18 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRI----------NNVYILV 67
H EE + GL+ +VKR LEK G N LP + ++ + +
Sbjct: 6 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRI 65
Query: 68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
L A +SF+ L E EE + +IL + I +VG
Sbjct: 66 ----------LLLAACISFV--LAWFEEGEETITAFVEPFVILLIL-IANAIVGVW 108
Score = 26.8 bits (60), Expect = 5.6
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 88 AYLLEAETNEEKP-QDNL-----WLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLA 141
+ A ++ P Q L L +++L C+ L+ I + + +
Sbjct: 237 RDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLIN-IGHFNDPVHGGSWIRGAIY 295
Query: 142 YLLEA 146
Y A
Sbjct: 296 YFKIA 300
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 52.7 bits (127), Expect = 2e-08
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 2 DVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRIN 61
D + + E + E++ L T GL+ EV +R K G N + ++ + N
Sbjct: 56 DGHDAEEEEEEATPGGGRVVPEDM---LQTDTRVGLTSEEVVQRRRKYGLNQMKEE-KEN 111
Query: 62 NVYILVGYIFRG-FSALLWFGALLSFL 87
+ +G+ F G ++ A+L+
Sbjct: 112 HFLKFLGF-FVGPIQFVMEGAAVLAAG 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 33/205 (16%), Positives = 64/205 (31%), Gaps = 57/205 (27%)
Query: 11 NEVDIDEHLIPLEEL--YSILDTHPDRGLSEL-----EVKRRLEKDGP--NSLPQKYRIN 61
+ + D ++ + +L YS+++ P + E+K +LE + S+ Y I
Sbjct: 398 DVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI- 455
Query: 62 NVYILVGYIFRGFSALLWFGALLSFLAY-LLEAETNEEKP------QDNLWLG--II--- 109
+ S + + L E E D +L I
Sbjct: 456 ----PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 110 LALTCIVTVL---------VGYIFRG---FSALLWFGALLSFLAYLLEAETNEEKPQDNL 157
A ++L YI + L+ A+L FL K ++NL
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLV--NAILDFL----------PKIEENL 559
Query: 158 WLGIILALTCIVTGSLLSVQQKYSP 182
I T ++ +++ +
Sbjct: 560 ---ICSKYTDLLR---IALMAEDEA 578
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB:
2lop_A
Length = 108
Score = 29.3 bits (65), Expect = 0.34
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 105 WLGIILALTCIVTVLVGYIFRG----FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLG 160
+G A + GY RG A L+ G L + AY + + ++ +
Sbjct: 12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRV------SNDKRDVKVS 65
Query: 161 IILALTCIVTG 171
+ A
Sbjct: 66 LFTAFFLATIM 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.62
Identities = 46/249 (18%), Positives = 75/249 (30%), Gaps = 100/249 (40%)
Query: 1 MD------VAQLRDLKNEVDIDEHLIPLEEL-YSILD---THP-----------DRGLSE 39
MD A +D+ N D H + +SILD +P + + E
Sbjct: 1633 MDLYKTSKAA--QDVWNRAD--NHF--KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 40 LEVKRRLEKDGPNSLPQKYRINNV-YILVGYIFRG---------FS--ALLWFGALLSFL 87
E L + + Y FR F+ AL L+
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT----LMEKA 1742
Query: 88 AY-LLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRG-FSALLWFGALLSF--LAYL 143
A+ L+++ P D + G +L G ++AL ++S L +
Sbjct: 1743 AFEDLKSKGL--IPADATFAG--HSL-------------GEYAALASLADVMSIESLVEV 1785
Query: 144 L--------EAETNEEKPQDNLWLGIIL-------------ALTCIV------TGSLLSV 176
+ A +E + N G+I AL +V TG L+ +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSN--YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 177 -------QQ 178
QQ
Sbjct: 1844 VNYNVENQQ 1852
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement,
helic; NMR {Homo sapiens}
Length = 121
Score = 28.1 bits (62), Expect = 0.92
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 105 WLGIILALTCIVTVLVGYIFRG----FSALLWFGALLSFLAYLLEAETNEEKPQDNLWLG 160
W G A ++GY+ G +A L FG+L AY L QD +
Sbjct: 21 WFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQL--------SQDPRNVW 72
Query: 161 IILALTCIVTGSL 173
+ LA + + G +
Sbjct: 73 VFLATSGTLAGIM 85
>3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron
transport, heme, iron, membrane, CY membrane; HET: HEM
HEC; 2.70A {Pseudomonas aeruginosa}
Length = 465
Score = 28.7 bits (64), Expect = 1.3
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 76 ALLWFG-ALLSFLAYLLEAETNEEKPQDNL-WLGIILALTCIVTVLVGYIFRGFSALLWF 133
++W + YL+ E++ E L W+ + V ++GY+ ++ L
Sbjct: 64 LIVWLLFGFMGAAYYLVPEESDCELYSPKLAWILFWVFAAAGVLTILGYLLVPYAGLARL 123
Query: 134 GALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIV 169
L + E E+ + I+
Sbjct: 124 TGN--ELWPTMGREFLEQPTISKAGIVIVALGFLFN 157
>2jln_A MHP1; hydantoin, transporter, membrane protein,
nucleobase-cation-symport-1 family; 2.85A
{Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Length = 501
Score = 27.0 bits (60), Expect = 5.3
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 70 IFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIIL-ALTCIVTVLVGY----IF 124
+ +L WFG A L+ T NL L I++ +VT G
Sbjct: 108 TLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWM 167
Query: 125 RGFSALLWFGALLSFLAYLL 144
F++ + + + +L
Sbjct: 168 NVFASPVLLAMGVYMVYLML 187
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 27.0 bits (60), Expect = 5.8
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 38 SELEVKRRLEKDGPNSLPQKYRINN 62
+E+ R + ++G Y+I+
Sbjct: 103 KLVELMRIISRNGDT----SYKIDG 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 6.3
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 35 RGLSELEVKRRLEKDGPNSLP 55
+ L +L+ L+ +S P
Sbjct: 20 QALKKLQ--ASLKLYADDSAP 38
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 26.0 bits (58), Expect = 7.1
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 38 SELEVKRRLEKDGPNSLPQKYRINNV 63
E+ ++RR+ DG +S Y +N
Sbjct: 98 DEVVIRRRVYPDGRSS----YWLNGR 119
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 26.2 bits (57), Expect = 7.7
Identities = 12/78 (15%), Positives = 21/78 (26%)
Query: 69 YIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFS 128
+ L L LAYL + E + ++ + T+ G +
Sbjct: 48 VFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGP 107
Query: 129 ALLWFGALLSFLAYLLEA 146
L + L A
Sbjct: 108 LANTLVTLEALCGMLGLA 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.432
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,204,851
Number of extensions: 184021
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 28
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)