RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6873
         (207 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 75.5 bits (185), Expect = 1e-16
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 16  DEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFS 75
             H    EE  +        GL+  +VKR LEK G N LP +   +   +++        
Sbjct: 3   AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLV 62

Query: 76  ALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
            +L   A +SF+    E     E+         ++ L  I   +VG  
Sbjct: 63  RILLLAACISFVLAWFE---EGEETITAFVEPFVILLILIANAIVGVW 107


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 26.6 bits (58), Expect = 2.6
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 20  IPLEELYSILDTHPDRGLSELEVKRRLEK--DGPNSLPQKYRINNVYILVGYIFRGFSAL 77
           +  + L +      D    E   K  +           + YR  +  + +G  F+  +A 
Sbjct: 217 LCWDMLCADKPVVEDTRSPEYNAKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENAN 276

Query: 78  LWFGALLSFLAYL 90
            WF  L   +  +
Sbjct: 277 TWFKNLDKLIQLV 289


>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
           (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
          Length = 444

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEK 48
           L+D+ ++VD  +      +L  I       G  + ++   L++
Sbjct: 401 LKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQDQIDAVLQE 443


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 25.5 bits (54), Expect = 5.2
 Identities = 14/127 (11%), Positives = 28/127 (22%), Gaps = 5/127 (3%)

Query: 62  NVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVG 121
           N ++   + F  F      GA   F    L    +  K    +    I   + +   L G
Sbjct: 8   NFWMFGLFFFFYFFI---MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFG 64

Query: 122 YIF--RGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQK 179
            +    G    L +      + +                L   +     +     +    
Sbjct: 65  LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124

Query: 180 YSPRTPW 186
                  
Sbjct: 125 VEAFIEK 131


>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase
           subunit IIa {Thermus thermophilus [TaxId: 274]}
          Length = 33

 Score = 22.6 bits (48), Expect = 8.2
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 14/45 (31%)

Query: 97  EEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLA 141
           EEKP+  L + ++L LT +V               W G    F A
Sbjct: 1   EEKPKGALAVILVLTLTILV--------------FWLGVYAVFFA 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.432 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 772,577
Number of extensions: 34495
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 9
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)