BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6874
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 84/203 (41%), Gaps = 52/203 (25%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A+++YTSG+TG PKG V+ + +TL A +DA DV + LPL HV
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH------ 209
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKR-GTKGDASVLH--PTALTAVPLILDRIYKGVHEK 401
G+ +G PL + + R T+G A L+ T L VP + RI + +
Sbjct: 210 -----GLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLP-- 262
Query: 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSP 461
A P + K L G RL++SG A L
Sbjct: 263 ---ADP--------------------------------ELAKALAG-ARLLVSGSAALPV 286
Query: 462 DTHELIKVCLCEKVIQGYGLTET 484
HE I +VI+ YG+TET
Sbjct: 287 HDHERIAAATGRRVIERYGMTET 309
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 53/208 (25%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA----VHIEPNDVFLGYLPLAHV 337
+P D + Y+SG+TG PKGV+LTH +I+++ D ++ DV L LP+ H+
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235
Query: 338 FELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG 397
+ L S +LCG+ +G P+ ++ K + G+ +L I K
Sbjct: 236 YALNS---IMLCGLRVG--APILIM---PKFEIGS-----------------LLGLIEK- 269
Query: 398 VHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGA 457
KVS A + + A + P +DK +R+I SGGA
Sbjct: 270 --YKVSIAPVVPPVMMSIA------------KSPDLDKHDLSS--------LRMIKSGGA 307
Query: 458 PLSPDTHELIKVCLCE-KVIQGYGLTET 484
PL + + ++ + ++ QGYG+TE
Sbjct: 308 PLGKELEDTVRAKFPQARLGQGYGMTEA 335
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
+ ++ G H +V+ +E ++ + + V E + + +N ++
Sbjct: 68 LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 127
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
+V + L K N+ K P + +I M+ + TD F+ + +
Sbjct: 128 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 179
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
P + K A+IM +SGSTG PKGV L H D + I P+
Sbjct: 180 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 239
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
L +P H F + + L+CG V + Y + S + K +++L PT
Sbjct: 240 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 295
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
LF+F +AK LIDK +
Sbjct: 296 ----------------------------LFSF-------FAK----STLIDKYDLSNLHE 316
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
I SGGAPLS + E + K + QGYGLTETTS
Sbjct: 317 --------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 353
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 136/369 (36%), Gaps = 78/369 (21%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ + +++ GK L++ G + + +E E+ I A + V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--------LTSTDTTN 252
+ H + ++ IV ++ L K + K + T++ ++ + L + N
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 253 FKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
G + FK + + A+IM +SGSTG PKGV LTH+N+++
Sbjct: 174 TPPGFQASSFKTVEVDRK-------------EQVALIMNSSGSTGLPKGVQLTHENIVTR 220
Query: 313 LKAFSDAVH---IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
D ++ + P L +P H F + + L+CG + LT D + +K
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV---VMLTKFDEETFLK 277
Query: 370 --RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRG 427
+ K + +L PT FA K + +
Sbjct: 278 TLQDYKCTSVILVPT-------------------------------LFAILNKSELLNKY 306
Query: 428 FRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTS 486
L++ I SGGAPLS + E + + V QGYGLTETTS
Sbjct: 307 DLSNLVE-----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349
Query: 487 CATVMHLND 495
+ D
Sbjct: 350 AIIITPEGD 358
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
+ ++ G H +V+ +E ++ + + V E + + +N ++
Sbjct: 63 LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 122
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
+V + L K N+ K P + +I M+ + TD F+ + +
Sbjct: 123 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 174
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
P + K A+IM +SGSTG PKGV L H D + I P+
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
L +P H F + + L+CG V + Y + S + K +++L PT
Sbjct: 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 290
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
LF+F +AK LIDK +
Sbjct: 291 ----------------------------LFSF-------FAK----STLIDKYDLSNLHE 311
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
I SGGAPLS + E + K + QGYGLTETTS
Sbjct: 312 --------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
+ ++ G H +V+ +E ++ + + V E + + +N ++
Sbjct: 63 LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 122
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
+V + L K N+ K P + +I M+ + TD F+ + +
Sbjct: 123 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 174
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
P + K A+IM +SGSTG PKGV L H D + I P+
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
L +P H F + + L+CG V + Y + S + K +++L PT
Sbjct: 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 290
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
LF+F +AK LIDK +
Sbjct: 291 ----------------------------LFSF-------FAK----STLIDKYDLSNLHE 311
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
I SGGAPLS + E + K + QGYGLTETTS
Sbjct: 312 --------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 69/200 (34%), Gaps = 50/200 (25%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A I+YTSG+TG KG L+HDN+ S D P+DV + LP+ H L S
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR 404
L A G L D + + T L VP R+
Sbjct: 216 NVTL--FARGSXIFLPKFDPDKILDLXARA-------TVLXGVPTFYTRL---------- 256
Query: 405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTH 464
+ P + K G RL +SG APL DTH
Sbjct: 257 -----------------------LQSPRLTKETTGHX--------RLFISGSAPLLADTH 285
Query: 465 ELIKVCLCEKVIQGYGLTET 484
V++ YG TET
Sbjct: 286 REWSAKTGHAVLERYGXTET 305
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA----VHIEPNDVFLGYLPLAHV 337
+P D + Y+SG+TG PKGV+LTH +++++ D ++ +DV L LP+ H+
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282
Query: 338 FELLSESVCLLCGVAIG 354
+ L S +LCG+ +G
Sbjct: 283 YALNS---IMLCGLRVG 296
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 74/367 (20%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ + +++ GK L++ G + + +E E+ I A + V
Sbjct: 54 SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--------LTSTDTTN 252
+ H + ++ IV ++ L K + K + T++ ++ + L + N
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 253 FKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
G + FK + + A+IM +SGSTG PKGV LTH+N+++
Sbjct: 174 TPPGFQASSFKTVEVDRK-------------EQVALIMNSSGSTGLPKGVQLTHENIVTR 220
Query: 313 LKAFSDAVH---IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
D ++ + P L +P H F + + L+CG + LT D + +K
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV---VMLTKFDEETFLK 277
Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
L T+V L+ LFA +
Sbjct: 278 --------TLQDYKCTSVILV-------------------PTLFAIL-----------NK 299
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSCA 488
L++K ++ G GAPLS + E + + V QGYGLTETTS
Sbjct: 300 SELLNKYDLSNLVEIASG--------GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI 351
Query: 489 TVMHLND 495
+ D
Sbjct: 352 IITPEGD 358
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFLGYLPLAH 336
P P D A + YTSGST P+GV++TH + + L+A S D + + P D + +LP H
Sbjct: 172 PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYH 228
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 134/367 (36%), Gaps = 74/367 (20%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ + +++ GK L++ G + + +E E+ I A + V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--------LTSTDTTN 252
+ H + ++ IV ++ L K + K + T++ ++ + L + N
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 253 FKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
G + FK + + A+IM +SGSTG PKGV LTH+N+++
Sbjct: 174 TPPGYQASSFKTVEVDRK-------------EQVALIMNSSGSTGLPKGVQLTHENIVTR 220
Query: 313 LKAFSDAVH---IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
D ++ + P L +P H F + + L+CG + LT D + +K
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV---VMLTKFDEETFLK 277
Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
L T V L+ LFA +
Sbjct: 278 --------TLQDYKCTNVILV-------------------PTLFAIL-----------NK 299
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSCA 488
L++K ++ G GAPLS + E + + V QGYGLTETTS
Sbjct: 300 SELLNKYDLSNLVEIASG--------GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI 351
Query: 489 TVMHLND 495
+ D
Sbjct: 352 IITPEGD 358
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 49/262 (18%)
Query: 86 IRDGVDTMEKVLRYVVTRFSDQRCLG-----------TRQILAEEDEKQPNGRIFKKYVM 134
+R G D+ E L ++ ++D R G ++ + + P+ ++
Sbjct: 40 VRHGTDSREGCLAHIEHHWTDLRPTGPAVERAPAGACVHELFEAQAARAPD----AVALL 95
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
+ + ++ +N+ A L LG P V + E + ++A A K +
Sbjct: 96 HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS-TDTTNF 253
E +A + +T +++T+ L + +T +Y+ED+ S N
Sbjct: 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--------TTTLYVEDEAASDAPAGNL 207
Query: 254 KQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
G+ P+D A +M+TSGSTG PKGV+ H + T
Sbjct: 208 ATGV------------------------GPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243
Query: 314 KAFSDAVHIEPNDVFLGYLPLA 335
D P++VFL P++
Sbjct: 244 LG-QDYAGFGPDEVFLQCSPVS 264
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 49/262 (18%)
Query: 86 IRDGVDTMEKVLRYVVTRFSDQRCLG-----------TRQILAEEDEKQPNGRIFKKYVM 134
+R G D+ E L ++ ++D R G ++ + + P+ ++
Sbjct: 40 VRHGTDSREGCLAHIEHHWTDLRPTGPAVERAPAGACVHELFEAQAARAPD----AVALL 95
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
+ + ++ +N+ A L LG P V + E + ++A A K +
Sbjct: 96 HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS-TDTTNF 253
E +A + +T +++T+ L + +T +Y+ED+ S N
Sbjct: 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--------TTTLYVEDEAASDAPAGNL 207
Query: 254 KQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
G+ P+D A +M+TSGSTG PKGV+ H + T
Sbjct: 208 ATGV------------------------GPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243
Query: 314 KAFSDAVHIEPNDVFLGYLPLA 335
D P++VFL P++
Sbjct: 244 LG-QDYAGFGPDEVFLQCSPVS 264
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 136/367 (37%), Gaps = 98/367 (26%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ ++++EA + L+ G V ++ + E +I K + + L E
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ I++ + ++ ++T ++ + + P T ++++DQ T F++
Sbjct: 551 DRISYMLADSAAACLLTHQEMKEQAAEL----PYTGTTLFIDDQ------TRFEE----- 595
Query: 261 PFKQIVKXXXXXXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK--- 314
P T P D A IMYTSG+TG PKG + TH N+ +K
Sbjct: 596 ---------------QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVD 640
Query: 315 --AFSDAVHIEPNDVFL---GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
AFSD D FL Y A F+ + +L + + T++DT
Sbjct: 641 YMAFSD------QDTFLSVSNYAFDAFTFDFYA---SMLNAARLIIADEHTLLDTERLTD 691
Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
+ + +V+ T ALF + W K G R
Sbjct: 692 LILQENVNVMFATT---------------------------ALFNLLTDAGEDWMK-GLR 723
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
C ++FG G R + P + +++ K+I YG TE T AT
Sbjct: 724 C-----ILFG------GERASV---------PHVRKALRIMGPGKLINCYGPTEGTVFAT 763
Query: 490 VMHLNDM 496
++D+
Sbjct: 764 AHVVHDL 770
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 123/345 (35%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
+ ++ G H +V+ +E ++ + + V E + + +N ++
Sbjct: 68 LAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQ 127
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
+V + L K N+ K P + +I M+ + TD F+ + +
Sbjct: 128 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 179
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
P + K A+IM +SGSTG PKGV L H + D + I P+
Sbjct: 180 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPD 239
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
L +P H F + + L+ G V + Y + S + K +++L PT
Sbjct: 240 TAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 295
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
LF+F + LIDK +
Sbjct: 296 ----------------------------LFSFL-----------AKSTLIDKYDLSNLHE 316
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
+ G GAPLS + E + K + QGYGLTETTS
Sbjct: 317 IASG--------GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 353
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
D A I+YTSG+TG G +L+HDN+ S D P+DV + LP+ H L
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 344 SVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS 403
S L A G L D + + T L VP R+
Sbjct: 215 SNVTLF--ARGSMIFLPXFDPDXILDLMARA-------TVLMGVPTFYTRL--------- 256
Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
+ P + G + L +SG APL DT
Sbjct: 257 ------------------------LQSPRLTXETTGHMR--------LFISGSAPLLADT 284
Query: 464 HELIKVCLCEKVIQGYGLTET 484
H V++ YG+TET
Sbjct: 285 HREWSAXTGHAVLERYGMTET 305
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
D A I+YTSG+TG G +L+HDN+ S D P+DV + LP+ H L
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 344 SVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS 403
S L A G L D + + T L VP R+
Sbjct: 215 SNVTLF--ARGSMIFLPXFDPDXILDLMARA-------TVLMGVPTFYTRL--------- 256
Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
+ P + G + L +SG APL DT
Sbjct: 257 ------------------------LQSPRLTXETTGHMR--------LFISGSAPLLADT 284
Query: 464 HELIKVCLCEKVIQGYGLTET 484
H V++ YG+TET
Sbjct: 285 HREWSAXTGHAVLERYGMTET 305
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
D A I+YTSG+TG G +L+HDN+ S D P+DV + LP+ H L
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 344 SVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS 403
S L A G L D + + T L VP R+
Sbjct: 215 SNVTL--FARGSMIFLPXFDPDXILDLMARA-------TVLMGVPTFYTRL--------- 256
Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
+ P + G + L +SG APL DT
Sbjct: 257 ------------------------LQSPRLTXETTGHMR--------LFISGSAPLLADT 284
Query: 464 HELIKVCLCEKVIQGYGLTET 484
H V++ YG+TET
Sbjct: 285 HREWSAXTGHAVLERYGMTET 305
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D IMYTSG+TG PKGVV TH+++ S +++ + + D L LP+ HV L +
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI 230
Query: 345 VCLLCGVAI 353
+ GV +
Sbjct: 231 FSAMRGVTL 239
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 450 RLILSGGAPLSPDTHELIKVCLCE--KVIQGYGLTETTSCATVMHLND 495
R ++GGAP+ LIK+ + +V+QGY LTE+ T++ D
Sbjct: 287 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSED 331
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D IMYTSG+TG PKGVV TH+++ S +++ + + D L LP+ HV L +
Sbjct: 157 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI 216
Query: 345 VCLLCGVAI 353
+ GV +
Sbjct: 217 FSAMRGVTL 225
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 450 RLILSGGAPLSPDTHELIKVCLCE--KVIQGYGLTETTSCATVMHLND 495
R ++GGAP+ LIK+ + +V+QGY LTE+ T++ D
Sbjct: 273 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSED 317
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 286 TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPNDVFLGYLPLAHVFELLS 342
TA+IM +SGSTG PKGV LTH N+ D V I P+ L +P H F + +
Sbjct: 226 TALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFT 285
Query: 343 ESVCLLCGVAI 353
L CG I
Sbjct: 286 TLGYLTCGFRI 296
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 452 ILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSCATV 490
I SGGAPL+ + E + K + QGYGLTETTS +
Sbjct: 346 IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIII 385
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A + YTSGST PKGV ++H N++ L + H + +LP H L+
Sbjct: 168 DIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIG-- 225
Query: 345 VCLLC----GVAIGYSTPLTMIDTS-SKIKRGTKGDASV 378
C+L G+ +P + + S +K TK A++
Sbjct: 226 -CILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATI 263
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 39/245 (15%)
Query: 113 RQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAE 172
Q+ E+ K+PN ++ + E +++++N +A + G V I E
Sbjct: 42 HQLFEEQVSKRPNNVA----IVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMME 97
Query: 173 TRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT 232
+ I A K V I +E I + +++++ +++T L+ NI +
Sbjct: 98 KSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI-QFN 156
Query: 233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYT 292
+V I+ ED + + TN P D A ++YT
Sbjct: 157 GQVE--IFEEDTIKIREGTNLH------------------------VPSKSTDLAYVIYT 190
Query: 293 SGSTGTPKGVVLTHDNMISTLKA-FSDAVHIEPNDVFLGYLPL---AHVFELLSESVCLL 348
SG+TG PKG +L H IS LK F +++++ D + + A V+E+ + LL
Sbjct: 191 SGTTGNPKGTMLEHKG-ISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMF---MALL 246
Query: 349 CGVAI 353
G ++
Sbjct: 247 TGASL 251
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ +++ + F L LG + V I+ E +A AC + I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
EA+A I ++ +VIT + + R+I LK P V+++ ++ +
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
++++G ++ ++ +++ +D I+YTSGSTG PKGV+ T ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
F P D++ +G++ H + L C L+ + TP M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
K + ++L+ PTA+ A+ D+ +G R + A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
+ W K G +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ +++ + F L LG + V I+ E +A AC + I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
EA+A I ++ +VIT + + R+I LK P V+++ ++ +
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
++++G ++ ++ +++ +D I+YTSGSTG PKGV+ T ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
F P D++ +G++ H + L C L+ + TP M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
K + ++L+ PTA+ A+ D+ +G R + A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
+ W K G +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ +++ + F L LG + V I+ E +A AC + I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
EA+A I ++ +VIT + + R+I LK P V+++ ++ +
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
++++G ++ ++ +++ +D I+YTSGSTG PKGV+ T ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
F P D++ +G++ H + L C L+ + TP M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
K + ++L+ PTA+ A+ D+ +G R + A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
+ W K G +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ +++ + F L LG + V I+ E +A AC + I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
EA+A I ++ +VIT + + R+I LK P V+++ ++ +
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
++++G ++ ++ +++ +D I+YTSGSTG PKGV+ T ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
F P D++ +G++ H + L C L+ + TP M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
K + ++L+ PTA+ A+ D+ +G R + A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
+ W K G +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ +++ + F L LG + V I+ E +A AC + I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
EA+A I ++ +VIT + + R+I LK P V+++ ++ +
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
++++G ++ ++ +++ +D I+YTSGSTG PKGV+ T ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
F P D++ +G++ H + L C L+ + TP M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
K + ++L+ PTA+ A+ D+ +G R + A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
+ W K G +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ +++ + F L LG + V I+ E +A AC + I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
EA+A I ++ +VIT + + R+I LK P V+++ ++ +
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
++++G ++ ++ +++ +D I+YTSGSTG PKGV+ T ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
F P D++ +G++ H + L C L+ + TP M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
K + ++L+ PTA+ A+ D+ +G R + A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
+ W K G +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 130/317 (41%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ +++ + F L LG + V I+ E +A AC + I+
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHD------LLPKFRNI---LKLTPRVSTLIYMEDQLTSTDTT 251
EA+A I ++ +VIT + +P +N+ LK P V+++ ++ +
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
++++G ++ ++ +++ +D I+YTSGSTG PKGV+ T ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
F P D++ +G++ H + L C L+ + TP M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
K + ++L+ PTA+ A+ D+ +G R + A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
+ W K G +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A + + GSTG K + THD+ I +LK + ++ + V+L LP+AH + L S
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242
Query: 345 V 345
V
Sbjct: 243 V 243
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL 340
P +D A ++YTSG+TG PKGV + H N+++ L +D +L + L+ F +
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSV 231
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 286 TAIIMYTSGSTGTPKGVVLTHDN-------MISTLKAFSDAVHIEPNDVFLGYLPLAHVF 338
TA + YTSGST TP GVV++H N ++S A +D + PN + +LP H
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIP-PPNSALVSWLPFYHDM 243
Query: 339 ELLSESVC--LLCGVAIGYSTPLTMIDTSSK 367
L+ +C +L G ++P++ + ++
Sbjct: 244 GLVI-GICAPILGGYPAVLTSPVSFLQRPAR 273
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLL 348
I+YTSGSTG PKGV +T++ ++S K + +++ VFL P + ++ L+
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Query: 349 CG 350
G
Sbjct: 209 TG 210
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLL 348
I+YTSGSTG PKGV +T++ ++S K + +++ VFL P + ++ L+
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
Query: 349 CG 350
G
Sbjct: 209 TG 210
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A + + GSTG K + THD+ I +LK + ++ + V+L LP AH + L S
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPG 242
Query: 345 V 345
V
Sbjct: 243 V 243
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 24/208 (11%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
G+ ++ +V A GLR+LG V + A A + T
Sbjct: 43 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254
L + IA+ +N E +++ +LLP I V + M D+ ++
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVM-DEKAPEGYLAYE 161
Query: 255 Q--GIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIM-YTSGSTGTPKGVVLTHDNMI- 310
+ G E P + P+ A M YT+G+TG PKGVV +H ++
Sbjct: 162 EALGEEADPVR------------------VPERAACGMAYTTGTTGLPKGVVYSHRALVL 203
Query: 311 -STLKAFSDAVHIEPNDVFLGYLPLAHV 337
S + D + DV L +P+ HV
Sbjct: 204 HSLAASLVDGTALSEKDVVLPVVPMFHV 231
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 286 TAIIMYTSGSTGTPKGVVLTHDNMISTLKA-----FSDAVHI-EPNDVFLGYLPLAHVFE 339
TA + YTSGST TP GVV +H N+ + F+D I PN + +LP H
Sbjct: 185 TAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXG 244
Query: 340 LLSESVC--LLCGVAIGYSTPLTMIDTSSK 367
L+ +C +L G ++P++ + ++
Sbjct: 245 LVI-GICAPILGGYPAVLTSPVSFLQRPAR 273
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMIS 311
D I++TSG+TG PKGV ++HDN++S
Sbjct: 146 DNYYIIFTSGTTGQPKGVQISHDNLLS 172
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL 340
D +I++T+ G P+G +++ N++ + DA + DV LG LPL HV L
Sbjct: 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL 216
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSE 343
D A +Y+SGSTG PKG V TH N+ T + ++ + I NDV L +
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAY----- 238
Query: 344 SVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA----SVLH-PTALTAVPLI 390
G+ G + PL++ T+ + DA V H PT VP +
Sbjct: 239 ------GLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTL 284
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
+T I+YTSGSTG PKGV ++ N+ S + +FL P + ++
Sbjct: 144 ETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLY 203
Query: 345 VCLLCG 350
CL G
Sbjct: 204 PCLQSG 209
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFEL 340
P A I YTSG+TG PK ++ S + S V + ++V LG +PL HV
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 341 LSESVCLLC 349
+ V L
Sbjct: 212 FAVLVAALA 220
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFEL 340
P A I YTSG+TG PK ++ S + S V + ++V LG +PL HV
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 341 LSESVCLLC 349
+ V L
Sbjct: 212 FAVLVAALA 220
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFEL 340
P A I YTSG+TG PK ++ S + S V + ++V LG +PL HV
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 341 LSESVCLLC 349
+ V L
Sbjct: 212 FAVLVAALA 220
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 4/33 (12%)
Query: 287 AIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319
A ++YTSGSTGTPKGV ++ N L +FSDA
Sbjct: 178 AYLLYTSGSTGTPKGVRVSRHN----LSSFSDA 206
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFEL 340
P A I YTSG+TG PK ++ S + S V + ++V LG +PL HV
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 341 LSESVCLLC 349
+ V L
Sbjct: 212 FAVLVAALA 220
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFEL 340
P A I YTSG+TG PK ++ S + S V + ++V LG +PL HV
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 341 LSESVCLLC 349
+ V L
Sbjct: 212 FAVLVAALA 220
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 282 TPKD-TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL 340
TP D A + GSTGTPK + TH++ +++A ++ + N L LP H F L
Sbjct: 188 TPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFML 247
Query: 341 LS 342
S
Sbjct: 248 SS 249
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFEL 340
P A I YTSG+TG PK ++ S + S V + ++V LG PL HV
Sbjct: 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGF 211
Query: 341 LSESVCLLC 349
+ V L
Sbjct: 212 FAVLVAALA 220
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 29/168 (17%)
Query: 175 AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT-- 232
A W +AA +P+ Y + + H +N++E ++ L F+ +L+ T
Sbjct: 96 ALWRVAATP-----VPINPXYKSF---ELEHILNDSEATTLVVHSXLYENFKPVLEKTGV 147
Query: 233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYT 292
RV F G E+ ++ P +D A+I YT
Sbjct: 148 ERV-----------------FVVGGEVNSLSEVXDSGSEDFENVKVNPE--EDVALIPYT 188
Query: 293 SGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL 340
G+TG PKGV LTH N+ + + A + D +G P H E
Sbjct: 189 GGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEF 236
>pdb|2W1N|A Chain A, Cohesin And Fibronectin Type-Iii Double Module Construct
From The Clostridium Perfringens Glycoside Hydrolase
Gh84c
Length = 238
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 414 AFAFEYKRKWAKRGFRC--PLIDKVVFGQTKKLLGGRVRLILSG--GAPLSPDTHELIKV 469
AFA+++ + + F + D VF KK+ G+VR+++S G PL P L KV
Sbjct: 44 AFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPL-PAKEVLAKV 102
Query: 470 CL-CEKVIQGYGLTETTSC 487
L E +G L+ T S
Sbjct: 103 VLRAEAKTEGSNLSVTNSS 121
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 8/200 (4%)
Query: 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT 197
E ++ + EA K L++ Q V ++ + + +I AC+ NI + I
Sbjct: 25 ESYTYQNLYCEASLLAKRLKAYQQS---RVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
L + + + +V ++ T L + I+ L + + +T+ + GI
Sbjct: 82 LTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL----DDIEFAGRDITTNGLLDNTMGI 137
Query: 258 EIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
+ + V D A IM+TSG+TG K V T N ++
Sbjct: 138 QYDTSNETV-VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK 196
Query: 318 DAVHIEPNDVFLGYLPLAHV 337
+++ + + +L LP+ H+
Sbjct: 197 ESLGFDRDTNWLSVLPIYHI 216
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 15/204 (7%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNI-PVVTIYATLG 199
S+ ++N A+ LR G +P ++ AE I A K + PV+ +++
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
E A+ ++ L + L + I + L + N + I
Sbjct: 112 SELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAIN- 170
Query: 260 VPFKQIVKXXXXXXXXXXXXPPTPKD-TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD 318
P + P+P D A + G+TGTPK + TH++ +++ +
Sbjct: 171 HPAEDFTAT------------PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218
Query: 319 AVHIEPNDVFLGYLPLAHVFELLS 342
+L +P AH + + S
Sbjct: 219 ICQFTQQTRYLCAIPAAHNYAMSS 242
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 280 PPTPKDTAIIMYTSGSTGTPKGV 302
P +D ++YTSGSTG PKGV
Sbjct: 258 PVDSEDPLFLLYTSGSTGAPKGV 280
>pdb|2JH2|A Chain A, X-Ray Crystal Structure Of A Cohesin-Like Module From
Clostridium Perfringens
pdb|2JH2|B Chain B, X-Ray Crystal Structure Of A Cohesin-Like Module From
Clostridium Perfringens
pdb|2JH2|C Chain C, X-Ray Crystal Structure Of A Cohesin-Like Module From
Clostridium Perfringens
Length = 148
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 414 AFAFEYKRKWAKRGFRC--PLIDKVVFGQTKKLLGGRVRLILSG--GAPLSPDTHELIKV 469
AFA+++ + + F + D VF KK+ G+VR+++S G PL P L KV
Sbjct: 46 AFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPL-PAKEVLAKV 104
Query: 470 CL-CEKVIQGYGLTETTS 486
L E +G L+ T S
Sbjct: 105 VLRAEAKAEGSNLSVTNS 122
>pdb|2OZN|A Chain A, The Cohesin-Dockerin Complex Of Nagj And Nagh From
Clostridium Perfringens
Length = 165
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 414 AFAFEYKRKWAKRGFRC--PLIDKVVFGQTKKLLGGRVRLILSG--GAPLSPDTHELIKV 469
AFA+++ + + F + D VF KK+ G+VR+++S G PL P L KV
Sbjct: 63 AFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPL-PAKEVLAKV 121
Query: 470 CL-CEKVIQGYGLTETTS 486
L E +G L+ T S
Sbjct: 122 VLRAEAKAEGSNLSVTNS 139
>pdb|2O4E|A Chain A, The Solution Structure Of A Protein-Protein Interaction
Module From A Family 84 Glycoside Hydrolase Of
Clostridium Perfringens
Length = 165
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 414 AFAFEYKRKWAKRGFRC--PLIDKVVFGQTKKLLGGRVRLILSG--GAPLSPDTHELIKV 469
AFA+++ + + F + D VF KK+ G+VR+++S G PL P L KV
Sbjct: 63 AFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPL-PAKEVLAKV 121
Query: 470 CL-CEKVIQGYGLTETTS 486
L E +G L+ T S
Sbjct: 122 VLRAEAKAEGSNLSVTNS 139
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 74/209 (35%), Gaps = 57/209 (27%)
Query: 288 IIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCL 347
+++TSGSTG PK + +T + ++ A+ + P L VCL
Sbjct: 41 FVLHTSGSTGXPKPITVTRAQLAASAAXTGKALSLGPGTRAL---------------VCL 85
Query: 348 LCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP 407
G G + RG + D L T TA PL +
Sbjct: 86 NVGYIAGLXX----------LVRGXELDWE-LTVTEPTANPL----------------AG 118
Query: 408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI 467
A F F + + L + GQ +L G+V L GGAP++ H L
Sbjct: 119 LDHADFDFVAXVPXQ-----LQSILENSATSGQVDRL--GKVLL---GGAPVN---HALA 165
Query: 468 KVC--LCEKVIQGYGLTETTSCATVMHLN 494
L V Q YG TET S + LN
Sbjct: 166 XQISDLAXPVYQSYGXTETVSHVALKALN 194
>pdb|2VF1|A Chain A, X-Ray Crystallographic Structure Of The Picobirnavirus
Capsid
pdb|2VF1|B Chain B, X-Ray Crystallographic Structure Of The Picobirnavirus
Capsid
Length = 525
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 190 PVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249
P TI ++ E IA I + V+ +H + P++ ++L+ T ++T+ + + +TS++
Sbjct: 334 PTGTITSSDNTEHIAGDIAVALGDRVLNSHIMEPQYSDVLEWTRLMATIEFDKASVTSSE 393
Query: 250 TTNFK 254
FK
Sbjct: 394 KVTFK 398
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 301 GVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPL- 359
GV T DN L A + ++P+ + + ++LSE+ L+ +A+G +TPL
Sbjct: 50 GVHTTQDNRQGALNADVVVLAVKPHQI---KXVCEELKDILSETKILVISLAVGVTTPLI 106
Query: 360 -TMIDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA 405
+ +S+I R S + T L A + D+ K + E + RA
Sbjct: 107 EKWLGKASRIVRAXPNTPSSVRAGATGLFANETV-DKDQKNLAESIXRA 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,792,575
Number of Sequences: 62578
Number of extensions: 529862
Number of successful extensions: 1192
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 91
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)