Query psy6874
Match_columns 504
No_of_seqs 320 out of 1901
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 20:36:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r44_A Fatty acyl COA syntheta 100.0 1.8E-45 6.1E-50 387.2 32.1 328 87-503 12-340 (517)
2 3g7s_A Long-chain-fatty-acid-- 100.0 5.5E-45 1.9E-49 386.5 32.8 334 90-503 18-359 (549)
3 3rix_A Luciferase, luciferin 4 100.0 6E-45 2.1E-49 386.2 31.8 337 90-503 19-363 (550)
4 3o83_A Peptide arylation enzym 100.0 4.7E-45 1.6E-49 386.4 30.7 316 89-490 28-350 (544)
5 1v25_A Long-chain-fatty-acid-C 100.0 3.1E-44 1.1E-48 379.9 36.2 319 90-492 17-337 (541)
6 3etc_A AMP-binding protein; ad 100.0 4.5E-44 1.5E-48 381.3 33.5 335 91-503 56-396 (580)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.1E-45 2.1E-49 385.1 26.6 307 90-486 24-337 (539)
8 1ry2_A Acetyl-coenzyme A synth 100.0 1.9E-44 6.5E-49 389.6 30.9 347 90-503 81-445 (663)
9 1pg4_A Acetyl-COA synthetase; 100.0 2.5E-44 8.7E-49 388.3 30.8 346 90-503 75-438 (652)
10 3ni2_A 4-coumarate:COA ligase; 100.0 3.8E-44 1.3E-48 378.9 30.6 318 88-491 19-342 (536)
11 3c5e_A Acyl-coenzyme A synthet 100.0 1.4E-43 4.8E-48 376.8 34.1 332 90-503 37-377 (570)
12 2d1s_A Luciferase, luciferin 4 100.0 2.3E-43 7.9E-48 373.7 31.4 332 88-503 22-365 (548)
13 3ivr_A Putative long-chain-fat 100.0 4.6E-43 1.6E-47 368.4 31.7 313 90-495 5-318 (509)
14 3t5a_A Long-chain-fatty-acid-- 100.0 7.9E-44 2.7E-48 371.5 25.6 324 90-494 23-364 (480)
15 2v7b_A Benzoate-coenzyme A lig 100.0 5.1E-43 1.7E-47 369.8 30.0 329 91-503 24-355 (529)
16 1t5h_X 4-chlorobenzoyl COA lig 100.0 5.4E-43 1.8E-47 367.4 29.5 303 90-485 1-310 (504)
17 3fce_A D-alanine--poly(phospho 100.0 3.3E-43 1.1E-47 369.7 25.4 304 92-491 2-306 (512)
18 3rg2_A Enterobactin synthase c 100.0 9.9E-43 3.4E-47 374.0 29.3 313 89-489 25-344 (617)
19 4fuq_A Malonyl COA synthetase; 100.0 5.1E-43 1.7E-47 367.3 25.1 306 95-489 4-310 (503)
20 3tsy_A Fusion protein 4-coumar 100.0 2E-42 6.9E-47 390.3 30.3 327 87-491 57-389 (979)
21 1amu_A GRSA, gramicidin synthe 100.0 2.7E-42 9.2E-47 366.4 28.9 301 88-492 36-336 (563)
22 3e7w_A D-alanine--poly(phospho 100.0 1.8E-42 6.3E-47 363.9 27.2 302 92-491 2-305 (511)
23 4gr5_A Non-ribosomal peptide s 100.0 6.5E-42 2.2E-46 364.4 31.0 299 88-491 72-371 (570)
24 3kxw_A Saframycin MX1 syntheta 100.0 2.5E-42 8.5E-47 369.5 27.4 323 87-492 7-340 (590)
25 3l8c_A D-alanine--poly(phospho 100.0 5.3E-42 1.8E-46 361.4 28.4 304 90-491 3-309 (521)
26 4dg8_A PA1221; ANL superfamily 100.0 1.4E-41 4.6E-46 364.4 30.5 296 89-491 25-321 (620)
27 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-42 6.3E-47 363.1 22.3 316 92-492 2-318 (501)
28 3gqw_A Fatty acid AMP ligase; 100.0 4.3E-41 1.5E-45 358.8 30.5 318 87-492 17-350 (576)
29 3ite_A SIDN siderophore synthe 100.0 6.8E-41 2.3E-45 356.2 28.6 318 87-494 16-341 (562)
30 2vsq_A Surfactin synthetase su 100.0 2.4E-39 8.3E-44 374.3 31.9 303 91-493 464-767 (1304)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 1.8E-40 6.2E-45 348.0 17.4 307 88-503 19-327 (505)
32 4gs5_A Acyl-COA synthetase (AM 99.9 6.7E-27 2.3E-31 233.8 13.8 160 283-495 36-195 (358)
33 3qov_A Phenylacetate-coenzyme 99.9 2.2E-22 7.7E-27 206.7 15.7 161 280-487 81-246 (436)
34 2y27_A Phenylacetate-coenzyme 99.9 3.6E-22 1.2E-26 205.2 16.5 161 280-487 86-250 (437)
35 3hgu_A EHPF; phenazine, antibi 99.9 2.5E-22 8.7E-27 201.7 12.9 167 281-489 88-275 (369)
36 2y4o_A Phenylacetate-coenzyme 99.9 6.9E-22 2.4E-26 203.5 16.0 177 259-487 72-252 (443)
37 2y27_A Phenylacetate-coenzyme 92.7 1.1 3.8E-05 44.7 12.9 107 137-244 107-221 (437)
38 3qov_A Phenylacetate-coenzyme 92.5 1.1 3.6E-05 44.8 12.5 107 137-244 103-217 (436)
39 2y4o_A Phenylacetate-coenzyme 91.9 1.3 4.4E-05 44.3 12.3 107 137-244 109-223 (443)
40 1mdb_A 2,3-dihydroxybenzoate-A 76.2 28 0.00097 35.4 13.2 104 137-244 199-309 (539)
41 2d1s_A Luciferase, luciferin 4 75.0 12 0.0004 38.4 9.9 105 137-243 209-319 (548)
42 3o83_A Peptide arylation enzym 71.1 27 0.00094 35.5 11.6 104 137-244 208-318 (544)
43 3hgu_A EHPF; phenazine, antibi 70.4 10 0.00035 36.5 7.7 105 138-244 109-242 (369)
44 3r44_A Fatty acyl COA syntheta 69.0 24 0.00082 35.7 10.5 103 137-244 187-295 (517)
45 1t5h_X 4-chlorobenzoyl COA lig 66.8 20 0.00069 36.1 9.4 103 137-243 170-282 (504)
46 4b2g_A GH3-1 auxin conjugating 65.1 1.6 5.6E-05 45.3 0.7 57 255-311 70-127 (609)
47 3rg2_A Enterobactin synthase c 64.4 65 0.0022 33.3 13.0 104 137-244 201-313 (617)
48 4epl_A Jasmonic acid-amido syn 62.3 2.1 7.3E-05 44.2 0.9 58 254-311 68-126 (581)
49 3ipl_A 2-succinylbenzoate--COA 60.6 56 0.0019 32.7 11.4 103 137-243 180-284 (501)
50 3rix_A Luciferase, luciferin 4 60.0 29 0.00099 35.4 9.2 107 137-244 207-318 (550)
51 1v25_A Long-chain-fatty-acid-C 58.6 37 0.0013 34.5 9.7 106 137-243 193-303 (541)
52 3g7s_A Long-chain-fatty-acid-- 58.5 55 0.0019 33.2 11.0 103 137-243 197-306 (549)
53 4eql_A 4-substituted benzoates 58.4 3.2 0.00011 43.0 1.4 59 253-311 62-121 (581)
54 3c5e_A Acyl-coenzyme A synthet 55.0 62 0.0021 33.1 10.7 105 137-244 223-333 (570)
55 3e7w_A D-alanine--poly(phospho 54.5 48 0.0016 33.3 9.6 104 137-243 160-270 (511)
56 4gr5_A Non-ribosomal peptide s 52.8 51 0.0017 33.7 9.6 103 138-244 232-337 (570)
57 3kxw_A Saframycin MX1 syntheta 51.1 55 0.0019 33.5 9.6 104 137-243 184-299 (590)
58 3fce_A D-alanine--poly(phospho 50.1 32 0.0011 34.6 7.4 104 137-243 161-271 (512)
59 3tbh_A O-acetyl serine sulfhyd 50.1 56 0.0019 30.9 8.7 65 156-220 62-127 (334)
60 1pg4_A Acetyl-COA synthetase; 49.9 1.1E+02 0.0037 31.9 11.7 106 137-244 273-389 (652)
61 4gs5_A Acyl-COA synthetase (AM 47.3 47 0.0016 31.7 7.8 101 137-243 54-158 (358)
62 3ite_A SIDN siderophore synthe 45.5 40 0.0014 34.4 7.4 108 137-244 192-305 (562)
63 3t5a_A Long-chain-fatty-acid-- 45.3 1.5E+02 0.0051 29.1 11.5 106 282-396 37-148 (480)
64 3ni2_A 4-coumarate:COA ligase; 45.2 92 0.0032 31.4 10.1 100 282-396 35-137 (536)
65 4dg8_A PA1221; ANL superfamily 44.1 82 0.0028 32.6 9.6 104 137-244 181-287 (620)
66 3ivr_A Putative long-chain-fat 43.4 1.5E+02 0.0053 29.4 11.4 100 137-241 177-280 (509)
67 3t18_A Aminotransferase class 39.7 2E+02 0.0069 27.4 11.3 46 161-209 122-172 (413)
68 3vc3_A Beta-cyanoalnine syntha 38.8 84 0.0029 29.8 8.0 69 151-220 73-142 (344)
69 3tsy_A Fusion protein 4-coumar 37.0 1.1E+02 0.0037 33.7 9.6 106 137-243 242-354 (979)
70 3l8c_A D-alanine--poly(phospho 36.3 1.3E+02 0.0043 30.2 9.4 106 137-243 162-274 (521)
71 4eez_A Alcohol dehydrogenase 1 36.0 1.8E+02 0.0063 27.1 10.0 77 140-219 137-216 (348)
72 3gqw_A Fatty acid AMP ligase; 36.0 1E+02 0.0035 31.2 8.7 105 137-243 193-309 (576)
73 1amu_A GRSA, gramicidin synthe 35.5 1.6E+02 0.0053 30.0 10.0 93 283-392 53-148 (563)
74 2v7b_A Benzoate-coenzyme A lig 35.5 1.1E+02 0.0037 30.7 8.7 97 282-395 36-135 (529)
75 3tqh_A Quinone oxidoreductase; 32.7 1.2E+02 0.0041 28.1 8.0 77 140-220 126-205 (321)
76 4fuq_A Malonyl COA synthetase; 32.5 79 0.0027 31.6 7.0 85 302-394 27-114 (503)
77 3nyq_A Malonyl-COA ligase; A/B 31.8 1.7E+02 0.0058 29.1 9.4 85 137-226 172-258 (505)
78 1ry2_A Acetyl-coenzyme A synth 31.1 1.3E+02 0.0043 31.5 8.6 105 138-244 280-395 (663)
79 3ju7_A Putative PLP-dependent 30.6 1.2E+02 0.0039 29.1 7.6 60 156-218 70-136 (377)
80 2jgn_A DBX, DDX3, ATP-dependen 30.2 2.4E+02 0.0083 23.5 9.5 89 148-243 32-123 (185)
81 4aec_A Cysteine synthase, mito 29.1 1.9E+02 0.0066 28.4 8.8 63 157-219 166-229 (430)
82 4h1h_A LMO1638 protein; MCCF-l 28.9 1.7E+02 0.0059 27.4 8.3 61 160-220 8-87 (327)
83 1z7w_A Cysteine synthase; tran 28.9 2E+02 0.0068 26.7 8.8 64 157-220 58-122 (322)
84 3etc_A AMP-binding protein; ad 28.4 1.8E+02 0.0061 29.6 9.0 104 138-244 243-352 (580)
85 3b8x_A WBDK, pyridoxamine 5-ph 28.4 2.6E+02 0.0089 26.3 9.8 54 160-217 76-134 (390)
86 1gqo_A Dehydroquinase; dehydra 28.3 2.1E+02 0.0071 23.3 7.2 74 136-216 21-97 (143)
87 3sr3_A Microcin immunity prote 27.8 1.8E+02 0.0063 27.4 8.3 61 160-220 9-88 (336)
88 2uyg_A 3-dehydroquinate dehydr 27.7 2.5E+02 0.0086 22.9 7.8 76 135-217 19-98 (149)
89 2jtq_A Phage shock protein E; 27.2 1.3E+02 0.0043 21.4 5.6 46 138-190 22-67 (85)
90 2vsq_A Surfactin synthetase su 26.7 1.2E+02 0.0042 34.6 8.0 104 137-244 624-731 (1304)
91 2hjv_A ATP-dependent RNA helic 26.6 2.6E+02 0.0087 22.6 8.4 88 148-243 22-112 (163)
92 2rb4_A ATP-dependent RNA helic 26.6 2.7E+02 0.0091 22.8 10.1 88 148-243 21-111 (175)
93 3tla_A MCCF; serine protease, 26.4 1.9E+02 0.0067 27.7 8.2 62 159-220 38-118 (371)
94 1o69_A Aminotransferase; struc 26.2 2.2E+02 0.0075 27.0 8.8 58 158-218 66-129 (394)
95 2q3b_A Cysteine synthase A; py 26.2 2.5E+02 0.0087 25.8 8.9 64 156-220 58-122 (313)
96 2r2n_A Kynurenine/alpha-aminoa 25.9 4.4E+02 0.015 25.1 11.9 54 161-217 129-196 (425)
97 3ly1_A Putative histidinol-pho 25.1 4E+02 0.014 24.4 10.7 80 161-244 89-181 (354)
98 3l6b_A Serine racemase; pyrido 25.0 1.8E+02 0.0061 27.5 7.7 59 163-222 75-133 (346)
99 4e5s_A MCCFLIKE protein (BA_56 24.3 2E+02 0.0068 27.1 7.7 61 160-220 8-87 (331)
100 1ve1_A O-acetylserine sulfhydr 24.3 4.1E+02 0.014 24.2 10.2 63 157-220 52-117 (304)
101 1mdo_A ARNB aminotransferase; 24.3 2.1E+02 0.0073 26.8 8.3 57 158-218 73-134 (393)
102 2pqm_A Cysteine synthase; OASS 24.0 2.4E+02 0.0083 26.5 8.4 62 158-220 71-133 (343)
103 1eg5_A Aminotransferase; PLP-d 23.9 2.5E+02 0.0086 26.1 8.7 55 162-217 87-145 (384)
104 1h05_A 3-dehydroquinate dehydr 22.8 2.1E+02 0.0073 23.3 6.4 76 135-217 22-100 (146)
105 2egu_A Cysteine synthase; O-ac 22.6 2.8E+02 0.0097 25.4 8.5 63 157-220 57-120 (308)
106 3jv7_A ADH-A; dehydrogenase, n 22.6 3.1E+02 0.011 25.4 9.0 78 140-220 143-225 (345)
107 3ri6_A O-acetylhomoserine sulf 21.9 3.1E+02 0.011 26.7 9.0 60 169-228 101-163 (430)
108 1zsy_A Mitochondrial 2-enoyl t 21.8 2.4E+02 0.0083 26.4 8.0 64 155-218 158-223 (357)
109 1d2f_A MALY protein; aminotran 21.6 3.1E+02 0.011 25.7 8.9 53 162-217 109-168 (390)
110 3euc_A Histidinol-phosphate am 21.4 4.8E+02 0.016 24.0 14.2 55 161-218 106-164 (367)
111 3eaq_A Heat resistant RNA depe 21.4 3.8E+02 0.013 22.9 8.6 88 148-243 18-108 (212)
112 3dwg_A Cysteine synthase B; su 21.1 3.6E+02 0.012 25.1 8.9 63 157-220 65-128 (325)
113 3dzz_A Putative pyridoxal 5'-p 21.0 2.5E+02 0.0085 26.3 8.0 55 161-218 106-167 (391)
114 2e7j_A SEP-tRNA:Cys-tRNA synth 21.0 3.7E+02 0.013 24.7 9.2 55 161-218 90-154 (371)
115 4b7c_A Probable oxidoreductase 20.9 3.2E+02 0.011 25.2 8.6 60 157-218 143-202 (336)
116 3uko_A Alcohol dehydrogenase c 20.9 5.1E+02 0.018 24.3 10.2 58 158-219 188-246 (378)
117 3fpc_A NADP-dependent alcohol 20.7 3E+02 0.01 25.7 8.4 60 155-218 158-218 (352)
118 3rq1_A Aminotransferase class 20.6 5.4E+02 0.018 24.2 12.6 46 161-209 123-173 (418)
119 1uqr_A 3-dehydroquinate dehydr 20.5 2E+02 0.0068 23.7 5.8 74 135-215 21-97 (154)
120 1fuk_A Eukaryotic initiation f 20.1 3.5E+02 0.012 21.8 9.1 87 149-243 18-107 (165)
121 3qwb_A Probable quinone oxidor 20.1 5.1E+02 0.017 23.8 9.8 57 159-218 144-200 (334)
122 3two_A Mannitol dehydrogenase; 20.0 3.2E+02 0.011 25.5 8.4 59 154-216 167-225 (348)
No 1
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.8e-45 Score=387.25 Aligned_cols=328 Identities=21% Similarity=0.238 Sum_probs=261.1
Q ss_pred cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874 87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN 166 (504)
Q Consensus 87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~ 166 (504)
.+...|+.++|++.++++|+++|+.+. +..+++||+||.++++++|++|+++|+++||+
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---------------------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~ 70 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---------------------STDVRMTYAQMNALANRCADVLTALGIAKGDR 70 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---------------------GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---------------------CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCE
Confidence 445679999999999999999999642 22258999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874 167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246 (504)
Q Consensus 167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~ 246 (504)
|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+....+....++....
T Consensus 71 V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (517)
T 3r44_A 71 VALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG--- 147 (517)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---
T ss_pred EEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---
Confidence 99999999999999999999999999999999999999999999999999998877766665544333221111110
Q ss_pred cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCc
Q psy6874 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d 326 (504)
...+.+....... ..+.....++|+++|+|||||||.||||+++|+++.+.+......+++.++|
T Consensus 148 ------------~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 212 (517)
T 3r44_A 148 ------------ADSLAERLRSAAA---DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD 212 (517)
T ss_dssp ------------HHHHHHHHHHCCC---CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTC
T ss_pred ------------cccHHHHhhccCc---CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCC
Confidence 0123333332221 2334456789999999999999999999999999999999988888999999
Q ss_pred EEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874 327 VFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS 406 (504)
Q Consensus 327 ~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~ 406 (504)
++++++|++|++++...+.+++.|+++++.+....... ++.++++++|++.++|+++..+.+...
T Consensus 213 ~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~------- 277 (517)
T 3r44_A 213 RLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKV--------WSLIVEERVCIGGAVPAILNFMRQVPE------- 277 (517)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHTTCCEEEECHHHHHHHHHSHH-------
T ss_pred EEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHH--------HHHHHHhCCeEEEeHHHHHHHHHhCcc-------
Confidence 99999999999999876666669999998865433222 335889999999999999998876321
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874 407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS 486 (504)
Q Consensus 407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~ 486 (504)
......++||.+++||+++++++.+.++.. +++++++||+||+++
T Consensus 278 ----------------------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~ 322 (517)
T 3r44_A 278 ----------------------------------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCG 322 (517)
T ss_dssp ----------------------------------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTT
T ss_pred ----------------------------------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeeccccccc
Confidence 112233689999999999999999999886 999999999999988
Q ss_pred ceeecccCC-CCCccCCC
Q psy6874 487 CATVMHLND-MGNINSNG 503 (504)
Q Consensus 487 ~~~~~~~~d-~~~~~s~G 503 (504)
.++.....+ ....+++|
T Consensus 323 ~~~~~~~~~~~~~~~~~G 340 (517)
T 3r44_A 323 GGTLLLSEDALRKAGSAG 340 (517)
T ss_dssp CEEEECGGGTTTTTTCCB
T ss_pred ceeecCCccccccCCCCC
Confidence 777665443 34455555
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.5e-45 Score=386.46 Aligned_cols=334 Identities=18% Similarity=0.261 Sum_probs=269.4
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..|+.++|++.++++||++|+.+.+ .. ...+..+++||+||.++++++|++|++.|+++||+|+|
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~------~~---------~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 82 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAE------PK---------FPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV 82 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEES------SC---------CCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCC------Cc---------ccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999997542 00 01123468999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~ 249 (504)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+ ++.++..+..
T Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 156 (549)
T 3g7s_A 83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----- 156 (549)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence 9999999999999999999999999999999999999999999999999988877777665544 5556655432
Q ss_pred ccccCCCceeeehhHHHhcccccCCCCCCCCCCC-CCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP-KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF 328 (504)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~ 328 (504)
...+.++....... .......+ +|+++|+|||||||.||||+++|.++.+.+......+++.++|++
T Consensus 157 ---------~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 224 (549)
T 3g7s_A 157 ---------VNSLSEVMDSGSED---FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTI 224 (549)
T ss_dssp ---------SSCHHHHHHHSCSC---CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEE
T ss_pred ---------CcCHHHHHhcCccc---cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEE
Confidence 23466665544321 12223333 899999999999999999999999999999988888899999999
Q ss_pred EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874 329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF 408 (504)
Q Consensus 329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~ 408 (504)
++++|++|.+++...+.++..|+++++.+....... ++.++++++|++.++|+++..+.+........
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---- 292 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEML--------AENIEKYKGTFSWAVPPALNVLVNTLESSNKT---- 292 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHH--------HHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC----
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHH--------HHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc----
Confidence 999999999998887889999999999764433222 33588999999999999999998753221100
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH----hC---Cceeeeccc
Q psy6874 409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC----LC---EKVIQGYGL 481 (504)
Q Consensus 409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~YG~ 481 (504)
...+++|.+++||+++++++.+.++.. ++ ++++++||+
T Consensus 293 -----------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 337 (549)
T 3g7s_A 293 -----------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGM 337 (549)
T ss_dssp -----------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEEC
T ss_pred -----------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEec
Confidence 112689999999999999999999877 56 899999999
Q ss_pred cccccceeecccCCCCCccCCC
Q psy6874 482 TETTSCATVMHLNDMGNINSNG 503 (504)
Q Consensus 482 TEt~~~~~~~~~~d~~~~~s~G 503 (504)
||+++.++.....+....+++|
T Consensus 338 TE~~~~~~~~~~~~~~~~~~~G 359 (549)
T 3g7s_A 338 TEACPMVTTNPPLRLDKSTTQG 359 (549)
T ss_dssp GGGSSEEEECCGGGGGGTTSCC
T ss_pred cccchhhhcCCccccCcCCCcc
Confidence 9998877776554434445555
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=6e-45 Score=386.23 Aligned_cols=337 Identities=22% Similarity=0.263 Sum_probs=265.4
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..|+.++|.+.++++|+++|+.... .....+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~------------------~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFT------------------DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEE------------------ETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHhCCCCceEEEee------------------ecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4689999999999999999985210 0012367999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~ 249 (504)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.++.++.++....
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 157 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD--- 157 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSC---
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcc---
Confidence 99999999999999999999999999999999999999999999999999988888887778888888887765311
Q ss_pred ccccCCCceeeehhHHHhcccccCC----CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc---cCC
Q psy6874 250 TTNFKQGIEIVPFKQIVKRGSESGS----RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHI 322 (504)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~ 322 (504)
.....++.++......... ..+.....++|+++|+|||||||.||||+++|+++.+.+...... ..+
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~ 231 (550)
T 3rix_A 158 ------YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 231 (550)
T ss_dssp ------BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC
T ss_pred ------ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccC
Confidence 1123456666544332110 111222345789999999999999999999999999888776654 477
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874 323 EPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402 (504)
Q Consensus 323 ~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 402 (504)
.++|++++++|++|++++...+.+++.|+++++.+....... ++.++++++|++.++|+++..+.+...
T Consensus 232 ~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~--- 300 (550)
T 3rix_A 232 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELF--------LRSLQDYKIQSALLVPTLFSFFAKSTL--- 300 (550)
T ss_dssp CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHTTCSEEEECHHHHHHHHHCCG---
T ss_pred CCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHH--------HHHHHHcCCeEEEeCcHHHHHHHhCcc---
Confidence 899999999999999999888899999999999865432222 335889999999999999998876310
Q ss_pred hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCc-eeeeccc
Q psy6874 403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK-VIQGYGL 481 (504)
Q Consensus 403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~ 481 (504)
.+ ....++||.+++||+++++++.++++..++++ ++++||+
T Consensus 301 ------------------------------~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~ 342 (550)
T 3rix_A 301 ------------------------------ID--------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGL 342 (550)
T ss_dssp ------------------------------GG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEEC
T ss_pred ------------------------------cc--------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCc
Confidence 11 11226899999999999999999999999875 9999999
Q ss_pred cccccceeecccCCCCCccCCC
Q psy6874 482 TETTSCATVMHLNDMGNINSNG 503 (504)
Q Consensus 482 TEt~~~~~~~~~~d~~~~~s~G 503 (504)
||+++.++.....+ ...+++|
T Consensus 343 TE~~~~~~~~~~~~-~~~~~vG 363 (550)
T 3rix_A 343 TETTSAILITPEGD-DKPGAVG 363 (550)
T ss_dssp GGGSSEEEECCTTC-CCTTEEE
T ss_pred CccccceecCCCCC-CCCCCcc
Confidence 99987777665433 3344444
No 4
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.7e-45 Score=386.42 Aligned_cols=316 Identities=16% Similarity=0.143 Sum_probs=256.6
Q ss_pred CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874 89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV 168 (504)
Q Consensus 89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va 168 (504)
...|+.++|++.++++||++|+.+. .+.+||+||.++++++|++|+++|+++||+|+
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~ 84 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG-----------------------ERQLSYIELDRLSTNLATRLAEKGLGKGDTAL 84 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC-----------------------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Confidence 3468999999999999999999632 26899999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcC
Q psy6874 169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMED 243 (504)
Q Consensus 169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~ 243 (504)
++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+..+....+..+.++..+.
T Consensus 85 i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (544)
T 3o83_A 85 VQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNH 164 (544)
T ss_dssp ECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETC
T ss_pred EECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecC
Confidence 999999999999999999999999999999999999999999999999988653 333444445556666666544
Q ss_pred CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874 244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE 323 (504)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 323 (504)
.. ....+.++....... ........++|+++|+|||||||.||||+++|.++.+.+......+++.
T Consensus 165 ~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~ 230 (544)
T 3o83_A 165 QA------------TDFGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN 230 (544)
T ss_dssp CT------------TSEEHHHHHHSCCSS--CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCC
T ss_pred Cc------------cccchhhhhhccccc--ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCC
Confidence 30 112344444332221 2222445679999999999999999999999999999999988889999
Q ss_pred CCcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874 324 PNDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401 (504)
Q Consensus 324 ~~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~ 401 (504)
++|++++++|++|.+++.. .+.++..|+++++.+....... ++.++++++|++.++|+++..+.+.....
T Consensus 231 ~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 302 (544)
T 3o83_A 231 SNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNC--------FSIIQRHQVNMASLVPSAVIMWLEKAAQY 302 (544)
T ss_dssp TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHH--------HHHHHHHTCCEEEECHHHHHHHHHHHTTT
T ss_pred CCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHH--------HHHHHHHCCCEEEechHHHHHHHhchhhc
Confidence 9999999999999999874 7789999999999866433222 33588999999999999999987742211
Q ss_pred HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccc
Q psy6874 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGL 481 (504)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~ 481 (504)
. ...++||.+++||+++++++.++++..++++++++||+
T Consensus 303 ~-----------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~ 341 (544)
T 3o83_A 303 K-----------------------------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGM 341 (544)
T ss_dssp H-----------------------------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEEC
T ss_pred c-----------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecc
Confidence 0 01168999999999999999999999999999999999
Q ss_pred cccccceee
Q psy6874 482 TETTSCATV 490 (504)
Q Consensus 482 TEt~~~~~~ 490 (504)
||+++.++.
T Consensus 342 TE~~~~~~~ 350 (544)
T 3o83_A 342 AEGLVNYTR 350 (544)
T ss_dssp TTSCEEECC
T ss_pred ccccceeec
Confidence 998754443
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.1e-44 Score=379.89 Aligned_cols=319 Identities=20% Similarity=0.229 Sum_probs=260.5
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..|+.++|++.++++||++|+.+.+ .++.+++||+||.++++++|++|+++|+++||+|++
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~-------------------~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 77 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH-------------------TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 77 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT-------------------TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec-------------------CCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4589999999999999999996421 123478999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~ 249 (504)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.++.++.++...
T Consensus 78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (541)
T 1v25_A 78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA---- 153 (541)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC----
T ss_pred EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCC----
Confidence 9999999999999999999999999999999999999999999999999988777777666677777777665431
Q ss_pred ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhh--hhccCCCCCcE
Q psy6874 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF--SDAVHIEPNDV 327 (504)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~ 327 (504)
+. ....++++..... . .....++++++|+|||||||.||||+++|+|+++..... ...+.++++|+
T Consensus 154 ----~~--~~~~~~~~~~~~~----~--~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~ 221 (541)
T 1v25_A 154 ----PE--GYLAYEEALGEEA----D--PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV 221 (541)
T ss_dssp ----CT--TCEEHHHHCCSCC----C--CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCE
T ss_pred ----Cc--ccccHHHHhhccC----C--cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCE
Confidence 00 2345665543221 1 133467899999999999999999999999998877653 34567889999
Q ss_pred EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874 328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP 407 (504)
Q Consensus 328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 407 (504)
+++++|++|++++...+.+++.|+++++.+.. .+.... ++.++++++|++.++|+++..+.+.....
T Consensus 222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~--~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------ 288 (541)
T 1v25_A 222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR--LDPASL-----VELFDGEGVTFTAGVPTVWLALADYLEST------ 288 (541)
T ss_dssp EEECSCTTSHHHHTHHHHHHHHTCEEEECTTC--CSHHHH-----HHHHHHTTCCEEEECHHHHHHHHHHHHHH------
T ss_pred EEEeccchhhhHHHHHHHHHhcCceEEeeCCC--CCHHHH-----HHHHHhcCeeEEecchHHHHHHHhhhhcc------
Confidence 99999999999987778899999999997632 122211 33588999999999999999997753221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874 408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC 487 (504)
Q Consensus 408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~ 487 (504)
....++||.+++||+++++++.+++ ..+|++++++||+||+++.
T Consensus 289 -----------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~ 332 (541)
T 1v25_A 289 -----------------------------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPV 332 (541)
T ss_dssp -----------------------------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSE
T ss_pred -----------------------------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccc
Confidence 1112689999999999999999999 5679999999999999877
Q ss_pred eeecc
Q psy6874 488 ATVMH 492 (504)
Q Consensus 488 ~~~~~ 492 (504)
++...
T Consensus 333 ~~~~~ 337 (541)
T 1v25_A 333 VVQNF 337 (541)
T ss_dssp EEECC
T ss_pred eeccc
Confidence 66653
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.5e-44 Score=381.28 Aligned_cols=335 Identities=13% Similarity=0.091 Sum_probs=265.5
Q ss_pred CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874 91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF 170 (504)
Q Consensus 91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~ 170 (504)
....++|++.++++||++|+.+.+ ..++.+++||+||.++++++|++|+++|+++||+|+|+
T Consensus 56 n~~~~~l~~~a~~~pd~~Al~~~~------------------~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~ 117 (580)
T 3etc_A 56 NFAYDVVDVYARDSPEKLAMIWCD------------------DYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLT 117 (580)
T ss_dssp CHHHHTHHHHHHHCTTCEEEEEEE------------------SSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEc------------------CCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 345699999999999999997542 12345789999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch--hHHHHHhhcCCCc-eEEEEEcCCCCc
Q psy6874 171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL--PKFRNILKLTPRV-STLIYMEDQLTS 247 (504)
Q Consensus 171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~l-~~ii~~~~~~~~ 247 (504)
++|++||+++++||+++|++++|+++.++.+++.+++++++++++|++.+.. +.+.++...++.+ ..++.++...
T Consensus 118 ~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 195 (580)
T 3etc_A 118 LKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV-- 195 (580)
T ss_dssp CTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC--
T ss_pred cCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc--
Confidence 9999999999999999999999999999999999999999999999988765 6666666666665 5555554320
Q ss_pred ccccccCCCceeeehhHHHhcccccCCCCCC--CCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCC
Q psy6874 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEG--SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPN 325 (504)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 325 (504)
...+..+.+......... ..+. ....++|+++|+|||||||.||||+++|.++++.+........+.++
T Consensus 196 --------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~ 266 (580)
T 3etc_A 196 --------LEGWIDFRKELEESSPIF-ERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDD 266 (580)
T ss_dssp --------CTTCEEHHHHHHHSCSCC-CCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTT
T ss_pred --------ccccccHHHHHhhCCccc-ccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCC
Confidence 113456666665443221 1111 24578999999999999999999999999999888777677789999
Q ss_pred cEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874 326 DVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR 404 (504)
Q Consensus 326 d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~ 404 (504)
|++++..|++|..+++. ++.++..|+++++.+... ++.... ++.++++++|+++++|++++.+.+. .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~-~~~~~~-----~~~i~~~~vt~~~~~P~~~~~l~~~---~--- 334 (580)
T 3etc_A 267 GLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDR-FEAKNM-----LEKASKYGVTTFCAPPTIYRFLIKE---D--- 334 (580)
T ss_dssp CEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSS-CCHHHH-----HHHHHHHTCCEEEECHHHHHHHHTS---C---
T ss_pred ceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCC-CCHHHH-----HHHHHHHCCeEEEccHHHHHHHHhc---c---
Confidence 99999999999988875 678899999998874322 121111 3358899999999999999888652 0
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccc
Q psy6874 405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET 484 (504)
Q Consensus 405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt 484 (504)
......++||.+++||+++++++.++++..+|++++++||+||+
T Consensus 335 ------------------------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~ 378 (580)
T 3etc_A 335 ------------------------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTET 378 (580)
T ss_dssp ------------------------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTS
T ss_pred ------------------------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccc
Confidence 00112368999999999999999999999899999999999999
Q ss_pred ccceeecccCCCCCccCCC
Q psy6874 485 TSCATVMHLNDMGNINSNG 503 (504)
Q Consensus 485 ~~~~~~~~~~d~~~~~s~G 503 (504)
++.++..+.. ....+++|
T Consensus 379 ~~~~~~~~~~-~~~~~~~G 396 (580)
T 3etc_A 379 VVTIATFPWM-EPKPGSIG 396 (580)
T ss_dssp SCCEECCTTS-CCCTTCCB
T ss_pred cceeecCCCC-CCCCCccc
Confidence 7665554433 34455665
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.1e-45 Score=385.11 Aligned_cols=307 Identities=19% Similarity=0.225 Sum_probs=250.9
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..|+.++|++.++++||++|+.+. .+++||+||.++++++|++|+++|+++||+|++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 80 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG-----------------------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC-----------------------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 358999999999999999999632 267999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcCC
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~ 244 (504)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++.. +.+..+....+.++.++..++.
T Consensus 81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T 1mdb_A 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (539)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999987632 2333444456666666655432
Q ss_pred CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874 245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 324 (504)
. .+.++...... ........++|+++|+|||||||.||||+++|+|+.+.+......+++.+
T Consensus 161 ~---------------~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~ 222 (539)
T 1mdb_A 161 E---------------EFLPLEDLHTE---PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH 222 (539)
T ss_dssp T---------------TSEEGGGCCCC---CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT
T ss_pred c---------------chhhhhhcccc---ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCC
Confidence 0 01111111111 11223456799999999999999999999999999999988888889999
Q ss_pred CcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874 325 NDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402 (504)
Q Consensus 325 ~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 402 (504)
+|++++++|++|.+++.. ++.+++.|+++++.+....... ++.++++++|++.++|+++..+.+.....
T Consensus 223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~- 293 (539)
T 1mdb_A 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDA--------FPLIEREKVTITALVPPLAMVWMDAASSR- 293 (539)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHH--------HHHHHHHTCSEEEECHHHHHHHHHHHHHC-
T ss_pred CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHH--------HHHHHHcCCeEEEccHHHHHHHHhCcccc-
Confidence 999999999999999874 7889999999999865432222 33588999999999999999987643211
Q ss_pred hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccc
Q psy6874 403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT 482 (504)
Q Consensus 403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T 482 (504)
....++||.+++||+++++++.++++..+|++++++||+|
T Consensus 294 ----------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~T 333 (539)
T 1mdb_A 294 ----------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMA 333 (539)
T ss_dssp ----------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECT
T ss_pred ----------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCC
Confidence 0112689999999999999999999998999999999999
Q ss_pred cccc
Q psy6874 483 ETTS 486 (504)
Q Consensus 483 Et~~ 486 (504)
|++.
T Consensus 334 E~~~ 337 (539)
T 1mdb_A 334 EGLV 337 (539)
T ss_dssp TSCE
T ss_pred CCcc
Confidence 9653
No 8
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.9e-44 Score=389.63 Aligned_cols=347 Identities=17% Similarity=0.156 Sum_probs=267.9
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVV 168 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~Va 168 (504)
..++.++|+++++++||++|+.+.. ...++.+++||+||.++++++|+.|+ ++|+++||+|+
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------------~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~ 143 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFEG-----------------DEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA 143 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEEC-----------------SSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred ccHHHHHHHHHhccCCCceEEEEEc-----------------CCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4578899999999999999997531 01134578999999999999999999 99999999999
Q ss_pred EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch---------hHHHHHhhcCCCceEEE
Q psy6874 169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL---------PKFRNILKLTPRVSTLI 239 (504)
Q Consensus 169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii 239 (504)
|+++|++|++++++||+++|++++|+++.++.+++.++|+++++++||++++.. +.+.++....+.+++++
T Consensus 144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 223 (663)
T 1ry2_A 144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL 223 (663)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence 999999999999999999999999999999999999999999999999987643 34555556667777888
Q ss_pred EEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH-hhhh
Q psy6874 240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK-AFSD 318 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~-~~~~ 318 (504)
+++..... .. .. .......|+++...... ..+..+..++|+++|+|||||||.||||+++|.+++.... ....
T Consensus 224 ~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 297 (663)
T 1ry2_A 224 VYRKTNNP-SV-AF-HAPRDLDWATEKKKYKT---YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297 (663)
T ss_dssp EECSSCCS-SC-CC-CSSSEEEHHHHHTTSCS---CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH
T ss_pred EEecCCCC-cc-cc-CCCccccHHHHHhhcCC---CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH
Confidence 77543100 00 00 01134567777654321 2233445679999999999999999999999999876654 3445
Q ss_pred ccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874 319 AVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK 396 (504)
Q Consensus 319 ~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 396 (504)
.+++.++|+++++.|++|+.+.. .++.+|+.|+++++.+.... .+.... ++.++++++|+++++|++++.+.+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~-----~~~i~~~~vt~~~~~Ps~~~~l~~ 372 (663)
T 1ry2_A 298 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRY-----WDIIDEHKVTQFYVAPTALRLLKR 372 (663)
T ss_dssp HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHH-----HHHHHHTTCSEEEECHHHHHHHTT
T ss_pred hcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHH-----HHHHHHcCCCEEEecHHHHHHHHh
Confidence 67889999999999999999985 57799999999999864322 222222 345899999999999999988854
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC---C
Q psy6874 397 GVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC---E 473 (504)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~---~ 473 (504)
...+. . +....++||.+++||+|+++++++++++.+| +
T Consensus 373 ~~~~~-------------------------------~--------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~ 413 (663)
T 1ry2_A 373 AGDSY-------------------------------I--------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI 413 (663)
T ss_dssp SCTTS-------------------------------S--------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSS
T ss_pred cCccc-------------------------------c--------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCc
Confidence 21000 0 0112378999999999999999999999888 8
Q ss_pred ceeeeccccccccceeeccc--CCCCCccCCC
Q psy6874 474 KVIQGYGLTETTSCATVMHL--NDMGNINSNG 503 (504)
Q Consensus 474 ~v~~~YG~TEt~~~~~~~~~--~d~~~~~s~G 503 (504)
++++.||+||+++.++...+ ......+++|
T Consensus 414 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G 445 (663)
T 1ry2_A 414 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 445 (663)
T ss_dssp CEEECBCCTTTCSCSEECCTTTCCCCCTTCCC
T ss_pred eEEEeECCccccCeeeccCCCCCcccCCCccc
Confidence 99999999999876665543 1223455665
No 9
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.5e-44 Score=388.34 Aligned_cols=346 Identities=18% Similarity=0.182 Sum_probs=266.1
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..++.++|+++++++||++|+.+.. ...++.+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------------~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i 137 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWEG-----------------DDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAI 137 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEEC-----------------SSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred hhHHHHHHHHHhccCCCceEEEEEc-----------------CCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3567889999999999999997531 01134578999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch---------hHHHHHhhcCC--CceEE
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL---------PKFRNILKLTP--RVSTL 238 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~l~~i 238 (504)
+++|++|++++++||+++|++++|+++.++++++.++++++++++||++++.. +.+.++....+ .++.+
T Consensus 138 ~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 217 (652)
T 1pg4_A 138 YMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHV 217 (652)
T ss_dssp ECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEE
T ss_pred EeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEE
Confidence 99999999999999999999999999999999999999999999999987642 33444444432 46677
Q ss_pred EEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH-hhh
Q psy6874 239 IYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK-AFS 317 (504)
Q Consensus 239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~-~~~ 317 (504)
+.++.......+. ......|++++..... ..+.....++|+++|+|||||||.||||+++|++++.... ...
T Consensus 218 i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~ 290 (652)
T 1pg4_A 218 IVLKRTGSDIDWQ----EGRDLWWRDLIEKASP---EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290 (652)
T ss_dssp EEECSSCCCCCCC----BTTEEEHHHHHTTSCS---CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHH
T ss_pred EEEeCCCCccccc----CCCceeHHHHHhhcCC---CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHH
Confidence 7765421111110 1124567887654322 2233345679999999999999999999999999887664 444
Q ss_pred hccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcEEEeccHHHHHHH
Q psy6874 318 DAVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTALTAVPLILDRIY 395 (504)
Q Consensus 318 ~~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~ 395 (504)
..+++.++|++++++|++|+.++. .++.+|+.|+++++.+.... .+.... ++.++++++|++.++|+++..+.
T Consensus 291 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~-----~~~i~~~~vt~~~~~P~~~~~l~ 365 (652)
T 1pg4_A 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM-----CQVVDKHQVNILYTAPTAIRALM 365 (652)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHH-----HHHHHHHTCSEEEECHHHHHHHH
T ss_pred HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHH-----HHHHHHhCCeEEEeCHHHHHHHH
Confidence 567889999999999999999985 57799999999999865321 222222 34588999999999999999886
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC---
Q psy6874 396 KGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC--- 472 (504)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~--- 472 (504)
+...+. ......++||.+++||+++++++.+++++.+|
T Consensus 366 ~~~~~~---------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~ 406 (652)
T 1pg4_A 366 AEGDKA---------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK 406 (652)
T ss_dssp TTGGGG---------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTC
T ss_pred hcCccc---------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCC
Confidence 531110 01112378999999999999999999998888
Q ss_pred CceeeeccccccccceeecccC-CCCCccCCC
Q psy6874 473 EKVIQGYGLTETTSCATVMHLN-DMGNINSNG 503 (504)
Q Consensus 473 ~~v~~~YG~TEt~~~~~~~~~~-d~~~~~s~G 503 (504)
++++++||+||+++.++...+. .....+++|
T Consensus 407 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G 438 (652)
T 1pg4_A 407 CPVVDTWWQTETGGFMITPLPGAIELKAGSAT 438 (652)
T ss_dssp SCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCB
T ss_pred CcEEccccCcccccceecCCCCCcCccCCccc
Confidence 9999999999998766655432 223445665
No 10
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.8e-44 Score=378.90 Aligned_cols=318 Identities=20% Similarity=0.320 Sum_probs=258.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874 88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV 167 (504)
Q Consensus 88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V 167 (504)
|...|+.++|++.++++||++|+.+. .+.+++||+||.++++++|++|++.|+++||+|
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---------------------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 77 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---------------------ANGDVYTYADVELTARRVASGLNKIGIQQGDVI 77 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---------------------TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---------------------CCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 34568999999999999999999642 122679999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874 168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS 247 (504)
Q Consensus 168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~ 247 (504)
+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+..... .+ .++.++..
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~--- 152 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSA--- 152 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCC---
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCC---
Confidence 99999999999999999999999999999999999999999999999999998777766654332 22 34444332
Q ss_pred ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh----ccCCC
Q psy6874 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD----AVHIE 323 (504)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~ 323 (504)
......++++...... ..+.....++|+++|+|||||||.||||+++|+++++.+..... .+.+.
T Consensus 153 --------~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~ 221 (536)
T 3ni2_A 153 --------PDGCLHFSELTQADEN---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFH 221 (536)
T ss_dssp --------CTTCEETHHHHTSCGG---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCC
T ss_pred --------CCCccCHHHHhhcccc---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCC
Confidence 0123456666544332 22334567899999999999999999999999999988766543 34688
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874 324 PNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402 (504)
Q Consensus 324 ~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 402 (504)
++|++++.+|++|++++.. .+.++..|+++++.+....... ++.++++++|++.++|+++..+.+...
T Consensus 222 ~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~--- 290 (536)
T 3ni2_A 222 SEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSL--------LGLIEKYKVSIAPVVPPVMMSIAKSPD--- 290 (536)
T ss_dssp TTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHH--------HHHHHHHTCCEEEECHHHHHHHHTCSC---
T ss_pred CCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHH--------HHHHHHhCCeEEEccHHHHHHHHhCcc---
Confidence 9999999999999999975 6789999999999876443332 335889999999999999988865210
Q ss_pred hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccc
Q psy6874 403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGL 481 (504)
Q Consensus 403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~ 481 (504)
.+ ....++||.+++||+++++++.++++..+ +++++++||+
T Consensus 291 ------------------------------~~--------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~ 332 (536)
T 3ni2_A 291 ------------------------------LD--------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM 332 (536)
T ss_dssp ------------------------------GG--------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred ------------------------------cc--------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence 01 11226899999999999999999999888 8999999999
Q ss_pred cccccceeec
Q psy6874 482 TETTSCATVM 491 (504)
Q Consensus 482 TEt~~~~~~~ 491 (504)
||+++.++.+
T Consensus 333 TE~~~~~~~~ 342 (536)
T 3ni2_A 333 TEAGPVLAMC 342 (536)
T ss_dssp GGGSSEEEEC
T ss_pred cccchhhhcc
Confidence 9998766554
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.4e-43 Score=376.82 Aligned_cols=332 Identities=13% Similarity=0.147 Sum_probs=263.6
Q ss_pred CCcHHHHHHHHHHh-----CCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCC
Q psy6874 90 VDTMEKVLRYVVTR-----FSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEP 163 (504)
Q Consensus 90 ~~tl~~~~~~~~~~-----~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~ 163 (504)
..++.++|++.++. +||++|+.+.+ ..++.+++||+||.++++++|++|++. |+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~------------------~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~ 98 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVN------------------GKGKELMWNFRELSENSQQAANVLSGACGLQR 98 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEEC------------------SSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEc------------------CCCceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence 34568999999998 99999997532 012347899999999999999999998 9999
Q ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcC
Q psy6874 164 RHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMED 243 (504)
Q Consensus 164 gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~ 243 (504)
||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.++.++.++.
T Consensus 99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999888877777777787777777654
Q ss_pred CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHH--HHHhhhhccC
Q psy6874 244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS--TLKAFSDAVH 321 (504)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~--~~~~~~~~~~ 321 (504)
.. . .....++++...... ..+.....++|+++|+|||||||.||||+++|. ++. ..... ..++
T Consensus 179 ~~--------~--~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~ 243 (570)
T 3c5e_A 179 KS--------C--DGWLNFKKLLNEAST---THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTG 243 (570)
T ss_dssp SC--------C--TTSEEHHHHHHHSCS---CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTS
T ss_pred cC--------c--cccccHHHHhhcccc---cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcC
Confidence 20 0 113456776654332 122234567999999999999999999999999 544 44444 6678
Q ss_pred CCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874 322 IEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE 400 (504)
Q Consensus 322 ~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~ 400 (504)
+.++|++++++|++|++++. ..+.++..|+++++.+.. ..+.... ++.++++++|++.++|+++..+.+.
T Consensus 244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~--- 314 (570)
T 3c5e_A 244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP-KFDPLVI-----LKTLSSYPIKSMMGAPIVYRMLLQQ--- 314 (570)
T ss_dssp CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS-SCCHHHH-----HHHHHHSCCCEEEECHHHHHHHHTS---
T ss_pred CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC-CCCHHHH-----HHHHHHhCCeEEeccHHHHHHHHhc---
Confidence 89999999999999999987 477899999999987642 1222211 3358899999999999999988652
Q ss_pred HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecc
Q psy6874 401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYG 480 (504)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG 480 (504)
.. .....++||.+++||+++++++.++++..+|++++++||
T Consensus 315 ~~---------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG 355 (570)
T 3c5e_A 315 DL---------------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYG 355 (570)
T ss_dssp CT---------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEE
T ss_pred cc---------------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccc
Confidence 00 001126899999999999999999999988999999999
Q ss_pred ccccccceeecccCCCCCccCCC
Q psy6874 481 LTETTSCATVMHLNDMGNINSNG 503 (504)
Q Consensus 481 ~TEt~~~~~~~~~~d~~~~~s~G 503 (504)
+||+++.++..... ....+++|
T Consensus 356 ~TE~~~~~~~~~~~-~~~~~~vG 377 (570)
T 3c5e_A 356 QTETGLTCMVSKTM-KIKPGYMG 377 (570)
T ss_dssp ETTTEEEEECCTTS-CCCTTCCC
T ss_pred hhhcccceecCccc-ccCCCccc
Confidence 99998655544322 23445555
No 12
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.3e-43 Score=373.67 Aligned_cols=332 Identities=22% Similarity=0.308 Sum_probs=259.9
Q ss_pred CCCCcHHH-HHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874 88 DGVDTMEK-VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN 166 (504)
Q Consensus 88 ~~~~tl~~-~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~ 166 (504)
+...|+.+ ++.+.++++ |++|+.+. .+.+++||+||.++++++|+.|++.|+++||+
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~---------------------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNA---------------------VTGVDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEET---------------------TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEc---------------------CCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34458899 888888899 99999631 12257999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874 167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246 (504)
Q Consensus 167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~ 246 (504)
|+|+++|++||+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+....++.++...
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV- 158 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSS-
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcc-
Confidence 9999999999999999999999999999999999999999999999999999988777766665566556666654320
Q ss_pred cccccccCCCceeeehhHHHhcccccCCCCCCCCC------CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc-
Q psy6874 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPP------TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA- 319 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~- 319 (504)
. . ..+..++++....... ..+.... .++|+++|+|||||||.||||+++|+++.+.+......
T Consensus 159 -~-----~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~ 228 (548)
T 2d1s_A 159 -D-----Y--RGYQCLDTFIKRNTPP--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI 228 (548)
T ss_dssp -C-----B--TTBCBHHHHHHHTSCT--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT
T ss_pred -c-----c--cccccHHHHHhcCccc--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh
Confidence 0 0 0134566665543211 0111111 23899999999999999999999999999988877666
Q ss_pred --cCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874 320 --VHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK 396 (504)
Q Consensus 320 --~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 396 (504)
+++.++|++++++|++|++++.. .+.++ .|+++++.+....... ++.++++++|++.++|+++..+.+
T Consensus 229 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETF--------LKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHH--------HHHHHHTTEEEEEECHHHHHHHHH
T ss_pred hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHH--------HHHHHHcCCcEEEecHHHHHHHHh
Confidence 67889999999999999999886 55666 9999999864322221 335889999999999999998865
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCce
Q psy6874 397 GVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKV 475 (504)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v 475 (504)
.. ..+ ....++||.+++||+++++++.++++..+ ++++
T Consensus 300 ~~---------------------------------~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 338 (548)
T 2d1s_A 300 SE---------------------------------LLN--------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGV 338 (548)
T ss_dssp CS---------------------------------CGG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred Cc---------------------------------ccc--------cccccceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence 21 000 11126899999999999999999999988 6889
Q ss_pred eeeccccccccceeecccCCCCCccCCC
Q psy6874 476 IQGYGLTETTSCATVMHLNDMGNINSNG 503 (504)
Q Consensus 476 ~~~YG~TEt~~~~~~~~~~d~~~~~s~G 503 (504)
+++||+||+++.++.... +....+++|
T Consensus 339 ~~~YG~TE~~~~~~~~~~-~~~~~~~~G 365 (548)
T 2d1s_A 339 RQGYGLTETTSAIIITPE-GDDKPGASG 365 (548)
T ss_dssp EEEEECGGGSSEEEECCT-TCCCTTCCB
T ss_pred eeccccccccceeeecCc-ccCCCCCCC
Confidence 999999999876665432 223444555
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.6e-43 Score=368.37 Aligned_cols=313 Identities=19% Similarity=0.209 Sum_probs=252.9
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..|+.++|+++++++||++|+.+. .+++||+||.++++++|++|++.|+++||+|++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 61 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD-----------------------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC-----------------------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 468999999999999999999632 268999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~ 249 (504)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.+++..
T Consensus 62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 137 (509)
T 3ivr_A 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS---- 137 (509)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC----
T ss_pred EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC----
Confidence 9999999999999999999999999999999999999999999999999988776566666677777777765431
Q ss_pred ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL 329 (504)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l 329 (504)
..+.++....... ..+.....++|+++|+|||||||.||||+++|+++.+.+......+++.++|+++
T Consensus 138 ----------~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l 205 (509)
T 3ivr_A 138 ----------GPFAPFKDLASDT--PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNL 205 (509)
T ss_dssp ----------SSCEEGGGTCCCS--CCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred ----------cChhhHhhccCCC--CCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEE
Confidence 0111111111111 2233456789999999999999999999999999999999988889999999999
Q ss_pred EecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874 330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK 409 (504)
Q Consensus 330 ~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~ 409 (504)
+++|++|++++...+.+++.|++.++......... ++.++++++|++.++|+++..+.+.. .
T Consensus 206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~p~~~~~l~~~~----~------ 267 (509)
T 3ivr_A 206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQA--------ARDIEAHKVTVMAEFAPMLGNILDQA----A------ 267 (509)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHHTCCEEEEETTHHHHHHHHC----C------
T ss_pred EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHH--------HHHHHHHCCcEEEecHHHHHHHHhcc----c------
Confidence 99999999999877766666666666543222211 33588999999999999999997642 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccce
Q psy6874 410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCA 488 (504)
Q Consensus 410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~ 488 (504)
....+++|.++.||++ ++.+.++..+ +++++++||+||+++.+
T Consensus 268 ---------------------------------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 311 (509)
T 3ivr_A 268 ---------------------------------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLS 311 (509)
T ss_dssp ---------------------------------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred ---------------------------------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccccccc
Confidence 0012689999999988 7788888777 99999999999998877
Q ss_pred eecccCC
Q psy6874 489 TVMHLND 495 (504)
Q Consensus 489 ~~~~~~d 495 (504)
+.....+
T Consensus 312 ~~~~~~~ 318 (509)
T 3ivr_A 312 TFAPYRD 318 (509)
T ss_dssp EEEEGGG
T ss_pred ccCcccc
Confidence 7665443
No 14
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=7.9e-44 Score=371.49 Aligned_cols=324 Identities=18% Similarity=0.202 Sum_probs=243.3
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..|+.++|+++++++||++|+.+.+. ... ..+..+++||+||.++++++|++|++.|+ +||+|+|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~-----~~~---------~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i 87 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDY-----EQD---------WDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI 87 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEET-----TTC---------TTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred cccHHHHHHHHHHhCCCCceEEEecc-----cCC---------CCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 45899999999999999999975420 000 11334789999999999999999999996 9999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecC---CCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCce--EEEEEcCC
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYA---TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVS--TLIYMEDQ 244 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~---~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~--~ii~~~~~ 244 (504)
+++|+++|+++++||+++|++++|+++ .++.+++.+++++++++++|++.+..+.+.+.....+... .++.++..
T Consensus 88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
T 3t5a_A 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167 (480)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence 999999999999999999999999999 7889999999999999999999988776665443332211 22222211
Q ss_pred CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874 245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 324 (504)
..... .........++++++|+|||||||.||||++||+|+.+++......+.+.+
T Consensus 168 ---------------------~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 223 (480)
T 3t5a_A 168 ---------------------DLDAP---NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADT 223 (480)
T ss_dssp ---------------------CTTCC------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTT
T ss_pred ---------------------ccccc---cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccc
Confidence 00000 022233456789999999999999999999999999999888877777776
Q ss_pred ------CcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHH
Q psy6874 325 ------NDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG 397 (504)
Q Consensus 325 ------~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~ 397 (504)
+|++++++|++|++++. .++.+++.|+++++.++..+......+ +..++++++| +.++|.++..+...
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~----~~~i~~~~~t-~~~~p~~~~~l~~~ 298 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARW----MHLMASDFHA-FSAAPNFAFELAAR 298 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHH----HHHTTSSSEE-EEEECHHHHHHHHH
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHH----HHHHHhhcee-EeeChHHHHHHHHh
Confidence 99999999999999977 478899999999998765332111111 3358899999 88999998888653
Q ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC-----
Q psy6874 398 VHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC----- 472 (504)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~----- 472 (504)
.... + .......++||.+++||+++++++.+.+++.++
T Consensus 299 ~~~~-----------------------------~--------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~ 341 (480)
T 3t5a_A 299 RTTD-----------------------------D--------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQ 341 (480)
T ss_dssp HCCT-----------------------------G--------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCC
T ss_pred hcCc-----------------------------c--------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCC
Confidence 1100 0 001112379999999999999999999998874
Q ss_pred -CceeeeccccccccceeecccC
Q psy6874 473 -EKVIQGYGLTETTSCATVMHLN 494 (504)
Q Consensus 473 -~~v~~~YG~TEt~~~~~~~~~~ 494 (504)
++++++||+||+++.++.....
T Consensus 342 ~~~~~~~YG~TE~~~~~~~~~~~ 364 (480)
T 3t5a_A 342 ERVIRPSYWLAEATVYVATSKPG 364 (480)
T ss_dssp GGGEEEEEEETTTTEEEEECCTT
T ss_pred hhhccccccccccceeEeecccC
Confidence 4799999999998877776543
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=5.1e-43 Score=369.81 Aligned_cols=329 Identities=17% Similarity=0.206 Sum_probs=249.8
Q ss_pred CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874 91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF 170 (504)
Q Consensus 91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~ 170 (504)
.++.++|+++++ +||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+++
T Consensus 24 ~~~~~~l~~~~~-~p~~~A~~~~----------------------~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~ 79 (529)
T 2v7b_A 24 NFAAYLFRLNET-RAGKTAYIDD----------------------T-GSTTYGELEERARRFASALRTLGVHPEERILLV 79 (529)
T ss_dssp CHHHHHHHHTGG-GTTSEEEECS----------------------S-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred eHHHHHHHhhhc-cCCceEEEeC----------------------C-CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 458899999999 9999999631 1 579999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCc-eEEEEEcCCCCccc
Q psy6874 171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRV-STLIYMEDQLTSTD 249 (504)
Q Consensus 171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~ 249 (504)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.+ +.++..+... .
T Consensus 80 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 156 (529)
T 2v7b_A 80 MLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE--S- 156 (529)
T ss_dssp CCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------
T ss_pred cCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc--c-
Confidence 99999999999999999999999999999999999999999999999988777666655544444 4555544320 0
Q ss_pred ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHH-HHHHHhhhhccCCCCCcEE
Q psy6874 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM-ISTLKAFSDAVHIEPNDVF 328 (504)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~ 328 (504)
.+.....++++...... ........++|+++|+|||||||.||||+++|+++ .+........+++.++|++
T Consensus 157 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~ 228 (529)
T 2v7b_A 157 -----EPRLAPLFEELIDAAAP---AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVV 228 (529)
T ss_dssp --------CCCBHHHHHHTSCC---CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEE
T ss_pred -----ccccccchhhhhccCCC---cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEE
Confidence 01112346666543221 22233456799999999999999999999999999 6666666666788999999
Q ss_pred EEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874 329 LGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP 407 (504)
Q Consensus 329 l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 407 (504)
++++|++|.+++.. .+.++..|+++++.+.. .+.... ++.+++++||++.++|+++..+.+... .+
T Consensus 229 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~--~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~~- 295 (529)
T 2v7b_A 229 FSAAKLFFAYGLGNGLTFPLSVGATAILMAER--PTADAI-----FARLVEHRPTVFYGVPTLYANMLVSPN-----LP- 295 (529)
T ss_dssp EESSCTTSHHHHHHHTHHHHHHTCEEECCCSC--CCHHHH-----HHHHHHSCCSEEEECHHHHHHHHTCTT-----CC-
T ss_pred EEeecHHHHHHHHHHHHHHHhcCcEEEEecCC--CCHHHH-----HHHHHHhCCEEEEecHHHHHHHHhCcc-----cc-
Confidence 99999999999875 56899999999987421 111111 335889999999999999988865210 00
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874 408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC 487 (504)
Q Consensus 408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~ 487 (504)
. ....++|.+++||+++++++.++++..+|++++++||+||+++.
T Consensus 296 -----------------------~------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~ 340 (529)
T 2v7b_A 296 -----------------------A------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHI 340 (529)
T ss_dssp -----------------------C------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSE
T ss_pred -----------------------c------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCce
Confidence 0 00037999999999999999999999899999999999999766
Q ss_pred eeecccCCCCCccCCC
Q psy6874 488 ATVMHLNDMGNINSNG 503 (504)
Q Consensus 488 ~~~~~~~d~~~~~s~G 503 (504)
++.....+ ...+++|
T Consensus 341 ~~~~~~~~-~~~~~~G 355 (529)
T 2v7b_A 341 FLSNRAGA-VEYGTTG 355 (529)
T ss_dssp EEECCTTC-CCTTSCC
T ss_pred eeccccCC-CccCCcc
Confidence 55554333 3344554
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=5.4e-43 Score=367.36 Aligned_cols=303 Identities=22% Similarity=0.271 Sum_probs=237.8
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
+.|+.++|+++++++||++|+.+. ...+++||+||.++++++|++|+++|+++||+|++
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---------------------~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i 59 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---------------------ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---------------------TTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---------------------CCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 357999999999999999999632 11267999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEE--cCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT--THDLLPKFRNILKLTPRVSTLIYMEDQLTS 247 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~ 247 (504)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+ +.+..+.+. ...+.++ ++
T Consensus 60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-~~-------- 127 (504)
T 1t5h_X 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGSGAR-II-------- 127 (504)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCCCCE-EE--------
T ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccccce-eE--------
Confidence 999999999999999999999999999999999999999999999999 766544331 1122222 22
Q ss_pred ccccccCCCceeeehhHHHhccccc--CCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC--C
Q psy6874 248 TDTTNFKQGIEIVPFKQIVKRGSES--GSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI--E 323 (504)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~ 323 (504)
.++++....... ....+.....++|+++|+|||||||.||||+++|+++.+.+......+++ .
T Consensus 128 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 194 (504)
T 1t5h_X 128 -------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG 194 (504)
T ss_dssp -------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSS
T ss_pred -------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCC
Confidence 122221111000 00111134567999999999999999999999999999998888777777 8
Q ss_pred CCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874 324 PNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402 (504)
Q Consensus 324 ~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 402 (504)
++|++++.+|++|++++. ..+.++..|+++++.+....... ++.++++++|++.++|+++..+.+...+..
T Consensus 195 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 266 (504)
T 1t5h_X 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA--------LQLVQQEQVTSLFATPTHLDALAAAAAHAG 266 (504)
T ss_dssp TTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHH--------HHHHHHHTCCEEECCHHHHHHHHHHHCCTT
T ss_pred CCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHH--------HHHHHHhCCeEEEeChHHHHHHHhhhcccc
Confidence 899999999999999985 57889999999999865332222 335889999999999999999876421000
Q ss_pred hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccc
Q psy6874 403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT 482 (504)
Q Consensus 403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T 482 (504)
. ....++||.+++||+++++++.++++..++++++++||+|
T Consensus 267 ~---------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~T 307 (504)
T 1t5h_X 267 S---------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTT 307 (504)
T ss_dssp C---------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEET
T ss_pred c---------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccc
Confidence 0 0112689999999999999999999999999999999999
Q ss_pred ccc
Q psy6874 483 ETT 485 (504)
Q Consensus 483 Et~ 485 (504)
|++
T Consensus 308 E~~ 310 (504)
T 1t5h_X 308 EAM 310 (504)
T ss_dssp TTE
T ss_pred ccc
Confidence 983
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.3e-43 Score=369.72 Aligned_cols=304 Identities=15% Similarity=0.215 Sum_probs=241.6
Q ss_pred cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874 92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA 171 (504)
Q Consensus 92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~ 171 (504)
|+.++|++.++++||++|+.+.+ +++||+||.++++++|++|.+.|+++||+|++++
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~~~-----------------------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~ 58 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVWRD-----------------------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYG 58 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETT-----------------------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred cHHHHHHHHHHHCCCceEEEeCC-----------------------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Confidence 68899999999999999996422 6799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874 172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251 (504)
Q Consensus 172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~ 251 (504)
+|++||+++++||+++|++++|+++.++.+++.++++++++++++++...... .+...+...
T Consensus 59 ~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~---------~~~~~~~~~--------- 120 (512)
T 3fce_A 59 HMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT---------DLPVRIVSE--------- 120 (512)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS---------CCSSEEEET---------
T ss_pred CCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc---------ccccceech---------
Confidence 99999999999999999999999999999999999999999999998643210 000000000
Q ss_pred ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEe
Q psy6874 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY 331 (504)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 331 (504)
..+.++....... ...+.....++|+++|+|||||||.||||+++|.++.+.+......+++.++|+++++
T Consensus 121 --------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 191 (512)
T 3fce_A 121 --------DNLKDIFFTHKGN-TPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQ 191 (512)
T ss_dssp --------HHHHHHHHHTTTC-CCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEEC
T ss_pred --------hhhhhhccccccc-CCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 0122222111111 0222334567999999999999999999999999999999988888899999999999
Q ss_pred cChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHH
Q psy6874 332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA 411 (504)
Q Consensus 332 lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~ 411 (504)
+|++|.+++...+.+++.|+++++.+.....+.... ++.++++++|++.++|+++..+.+...
T Consensus 192 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~------------ 254 (512)
T 3fce_A 192 APFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDL-----FASLEQSDIQVWTSTPSFAEMCLMEAS------------ 254 (512)
T ss_dssp SCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHH-----HHHHHHHCCCEEEECHHHHHHHTTSTT------------
T ss_pred CCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHH-----HHHHHHcCCcEEEecHHHHHHHHhhcc------------
Confidence 999999999888899999999999876433333222 335889999999999999988754210
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccceee
Q psy6874 412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCATV 490 (504)
Q Consensus 412 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~~ 490 (504)
......+++|.+++||+++++++.+.+++.+ +++++++||+||+++.++.
T Consensus 255 -----------------------------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 305 (512)
T 3fce_A 255 -----------------------------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTG 305 (512)
T ss_dssp -----------------------------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEE
T ss_pred -----------------------------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheee
Confidence 0011236899999999999999999999888 8999999999999877665
Q ss_pred c
Q psy6874 491 M 491 (504)
Q Consensus 491 ~ 491 (504)
.
T Consensus 306 ~ 306 (512)
T 3fce_A 306 I 306 (512)
T ss_dssp E
T ss_pred E
Confidence 4
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.9e-43 Score=374.02 Aligned_cols=313 Identities=17% Similarity=0.197 Sum_probs=254.6
Q ss_pred CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874 89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV 168 (504)
Q Consensus 89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va 168 (504)
...|+.++|+++++ ||++|+.+. .+.+||+||.++++++|++|++.|+++||+|+
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~-----------------------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~ 79 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG-----------------------ERQLSYRELNQAADNLACSLRRQGIKPGETAL 79 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC-----------------------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 34678899999887 999999632 26899999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcC
Q psy6874 169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMED 243 (504)
Q Consensus 169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~ 243 (504)
++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.+.. +.+.......+.++.+...+.
T Consensus 80 l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (617)
T 3rg2_A 80 VQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND 159 (617)
T ss_dssp EECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC
T ss_pred EECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc
Confidence 999999999999999999999999999999999999999999999999997653 333444445566666665543
Q ss_pred CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874 244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE 323 (504)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 323 (504)
.. ...+.+....... .....+..++++++|+|||||||.||||+++|+++.+.+......+++.
T Consensus 160 ~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~ 223 (617)
T 3rg2_A 160 SG-------------EHNLQDAINHPAE---DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFT 223 (617)
T ss_dssp CS-------------TTBHHHHHHSCCS---SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCC
T ss_pred cc-------------ccchhhhhccccc---ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCC
Confidence 30 1123333332221 2233445679999999999999999999999999999999988888999
Q ss_pred CCcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874 324 PNDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401 (504)
Q Consensus 324 ~~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~ 401 (504)
++|++++++|++|.+++.. .+.+++.|+++++.+....... +..++++++|++.++|+++..+.+.....
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 295 (617)
T 3rg2_A 224 QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLC--------FPLIEKHQVNVTALVPPAVSLWLQALIEG 295 (617)
T ss_dssp TTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHTTCCEEEECHHHHHHHHHHHHTT
T ss_pred CcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHH--------HHHHHHhCCcEEEcchHHHHHHHHhhhcc
Confidence 9999999999999999874 7889999999999765433222 23478999999999999999987743221
Q ss_pred HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccc
Q psy6874 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGL 481 (504)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~ 481 (504)
... ...++||.+++||+++++++.+.++..++++++|.||+
T Consensus 296 ~~~---------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~ 336 (617)
T 3rg2_A 296 ESR---------------------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM 336 (617)
T ss_dssp CCT---------------------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEE
T ss_pred ccc---------------------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEecc
Confidence 100 01268999999999999999999999899999999999
Q ss_pred ccccccee
Q psy6874 482 TETTSCAT 489 (504)
Q Consensus 482 TEt~~~~~ 489 (504)
||++..++
T Consensus 337 tE~~~~~~ 344 (617)
T 3rg2_A 337 AEGLVNYT 344 (617)
T ss_dssp TTEEEEEC
T ss_pred Ccceeecc
Confidence 99875444
No 19
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.1e-43 Score=367.31 Aligned_cols=306 Identities=22% Similarity=0.277 Sum_probs=240.5
Q ss_pred HHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC
Q psy6874 95 KVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR 174 (504)
Q Consensus 95 ~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~ 174 (504)
++|++.++++|+++++.... .+.+++||+||.++++++|++|+++|+++||+|+++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--------------------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--------------------AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--------------------TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEec--------------------CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 47888999999999986321 2225799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccC
Q psy6874 175 AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254 (504)
Q Consensus 175 ~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 254 (504)
++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+....+. .++.++...
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------- 132 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDG--------- 132 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTS---------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCc---------
Confidence 999999999999999999999999999999999999999999998766555444333222 233332210
Q ss_pred CCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecCh
Q psy6874 255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL 334 (504)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl 334 (504)
...+.+....... ........++|+++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|+
T Consensus 133 ----~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 205 (503)
T 4fuq_A 133 ----RGSLTDAAAGASE---AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPI 205 (503)
T ss_dssp ----CSHHHHHHHTSCS---CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCS
T ss_pred ----ccccchhhhcCCC---CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCCh
Confidence 0112222211111 223345678999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHH
Q psy6874 335 AHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALF 413 (504)
Q Consensus 335 ~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~ 413 (504)
+|.+++.. .+.+++.|+++++.+....... ++.++ ++|++.++|+++..+.+...
T Consensus 206 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~--~~t~~~~~P~~~~~l~~~~~-------------- 261 (503)
T 4fuq_A 206 YHTHGLFVASNVTLFARGSMIFLPKFDPDKI--------LDLMA--RATVLMGVPTFYTRLLQSPR-------------- 261 (503)
T ss_dssp SSHCCCCCCHHHHHHTTCEEEECSSCCHHHH--------HHHHT--TCCEEEECHHHHHHHHTCTT--------------
T ss_pred HHHHHHHHHHHHHHHhCCEEEEcCCCCHHHH--------HHHHh--hcCEEEEHHHHHHHHHhCCC--------------
Confidence 99998764 6788999999998765332222 11244 89999999999998865210
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874 414 AFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489 (504)
Q Consensus 414 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~ 489 (504)
. .....+++|.+++||+++++++.+.++..+|++++++||+||++..++
T Consensus 262 -------------------~--------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 310 (503)
T 4fuq_A 262 -------------------L--------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTS 310 (503)
T ss_dssp -------------------C--------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBC
T ss_pred -------------------c--------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccc
Confidence 0 011126899999999999999999999999999999999999976543
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2e-42 Score=390.25 Aligned_cols=327 Identities=20% Similarity=0.293 Sum_probs=260.7
Q ss_pred cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874 87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN 166 (504)
Q Consensus 87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~ 166 (504)
.|...|+.++|++.++++||++|+++. .+.+++||+||.++++++|++|+++|+++||+
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---------------------~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~ 115 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---------------------PTGHVYTYSDVHVISRQIAANFHKLGVNQNDV 115 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---------------------TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---------------------CCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCE
Confidence 456679999999999999999999642 11267999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874 167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246 (504)
Q Consensus 167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~ 246 (504)
|+|+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.+..+.... .+ .++.++...
T Consensus 116 V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~- 192 (979)
T 3tsy_A 116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNE- 192 (979)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCT-
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcc-
Confidence 999999999999999999999999999999999999999999999999999998777666554432 22 344443320
Q ss_pred cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh----ccCC
Q psy6874 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD----AVHI 322 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~ 322 (504)
..+.......+.++...........+.....++|+++|+|||||||.||||+++|+++++.+..... .+.+
T Consensus 193 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 267 (979)
T 3tsy_A 193 -----SVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF 267 (979)
T ss_dssp -----TSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCC
T ss_pred -----cccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccC
Confidence 0111123455666544332211122334567899999999999999999999999999988776543 3467
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874 323 EPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401 (504)
Q Consensus 323 ~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~ 401 (504)
.++|++++++|++|++++.. .+.++..|+++++.+....... ++.++++++|++.++|+++..+.+....
T Consensus 268 ~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~- 338 (979)
T 3tsy_A 268 HSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL--------LELIQRCKVTVAPMVPPIVLAIAKSSET- 338 (979)
T ss_dssp CSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHH--------HHHHHHHTCCEEEECHHHHHHHHHCGGG-
T ss_pred CCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHH--------HHHHHHhCCeEEEcHHHHHHHHHhCccc-
Confidence 89999999999999999975 6788999999999875443322 3358899999999999999988763110
Q ss_pred HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecc
Q psy6874 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYG 480 (504)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG 480 (504)
.....++||.+++||+++++++.++++..+ +++++++||
T Consensus 339 ----------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG 378 (979)
T 3tsy_A 339 ----------------------------------------EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYG 378 (979)
T ss_dssp ----------------------------------------GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEE
T ss_pred ----------------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeec
Confidence 011236899999999999999999999888 899999999
Q ss_pred ccccccceeec
Q psy6874 481 LTETTSCATVM 491 (504)
Q Consensus 481 ~TEt~~~~~~~ 491 (504)
+||+++.++..
T Consensus 379 ~TE~~~~~~~~ 389 (979)
T 3tsy_A 379 MTEAGPVLAMS 389 (979)
T ss_dssp CGGGCSEEEEC
T ss_pred hhhhhHHHHhC
Confidence 99998766654
No 21
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-42 Score=366.44 Aligned_cols=301 Identities=20% Similarity=0.233 Sum_probs=238.8
Q ss_pred CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874 88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV 167 (504)
Q Consensus 88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V 167 (504)
+...++.++|++.++++||++|+.+. .+++||+||.++++++|++|+++|+++||+|
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 92 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE-----------------------NEQLTYHELNVKANQLARIFIEKGIGKDTLV 92 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC-----------------------CceecHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 34568999999999999999999632 2679999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874 168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS 247 (504)
Q Consensus 168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~ 247 (504)
+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.. ......++.++.. .
T Consensus 93 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~~~~~~--~ 166 (563)
T 1amu_A 93 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVEIFEED--T 166 (563)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEEECCCS--T
T ss_pred EEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCceeeecch--h
Confidence 999999999999999999999999999999999999999999999999999875443322 1111122222211 0
Q ss_pred ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV 327 (504)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~ 327 (504)
+ ..... .....+..++|+++|+|||||||.||||++||+|+.+.+......+++.++|+
T Consensus 167 --------------~----~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~ 225 (563)
T 1amu_A 167 --------------I----KIREG---TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR 225 (563)
T ss_dssp --------------T----TTSCC---SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCE
T ss_pred --------------h----ccccC---ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCE
Confidence 0 00000 11223456789999999999999999999999999998888888889999999
Q ss_pred EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874 328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP 407 (504)
Q Consensus 328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 407 (504)
+++++|++|..++...+.+++.|+++++.+.....+.... ++.++++++|++.++|+++..+...
T Consensus 226 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~---------- 290 (563)
T 1amu_A 226 IGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF-----EQYINQKEITVITLPPTYVVHLDPE---------- 290 (563)
T ss_dssp EEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHH-----HHHHHHTTCCEEEECHHHHTTSCTT----------
T ss_pred EEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHH-----HHHHHHcCCcEEEeCHHHHHHHHhc----------
Confidence 9999999999998888899999999999876443333222 3358899999999999988765320
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874 408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC 487 (504)
Q Consensus 408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~ 487 (504)
...++|.+++||+++++++.+.++. .++++++||+||+++.
T Consensus 291 -------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~ 331 (563)
T 1amu_A 291 -------------------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTIC 331 (563)
T ss_dssp -------------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSC
T ss_pred -------------------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHh
Confidence 0158999999999999999999976 4789999999999876
Q ss_pred eeecc
Q psy6874 488 ATVMH 492 (504)
Q Consensus 488 ~~~~~ 492 (504)
++...
T Consensus 332 ~~~~~ 336 (563)
T 1amu_A 332 ATTWV 336 (563)
T ss_dssp SEEEE
T ss_pred heeee
Confidence 66554
No 22
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.8e-42 Score=363.94 Aligned_cols=302 Identities=16% Similarity=0.225 Sum_probs=248.4
Q ss_pred cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEE
Q psy6874 92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEPRHNVVIF 170 (504)
Q Consensus 92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~Vai~ 170 (504)
|+.++|+++++++|+++|+.+. .+++||+||.++++++|++|.+. |.++|++|+++
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~ 58 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRSQ-----------------------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVY 58 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEE
T ss_pred cHHHHHHHHHHHCCCCeEEEcC-----------------------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 6889999999999999999632 26899999999999999999874 88999999999
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874 171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT 250 (504)
Q Consensus 171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~ 250 (504)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++.... ..
T Consensus 59 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~------------------ 114 (511)
T 3e7w_A 59 GHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV------------------ 114 (511)
T ss_dssp ESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC------------------
T ss_pred ecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc------------------
Confidence 999999999999999999999999999999999999999999999997653210 00
Q ss_pred cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874 251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG 330 (504)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~ 330 (504)
........++++....... ........++|+++|+|||||||.||||+++|.++.+.+......+++.++|++++
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~ 189 (511)
T 3e7w_A 115 ---GQQIQTVSAEELLENEGGS--VSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLN 189 (511)
T ss_dssp ---CCSSCEEEHHHHHTSCSCC--CCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEE
T ss_pred ---ccccceecHhhhhccccCC--ccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEE
Confidence 0112344555655433221 22223456789999999999999999999999999999998888889999999999
Q ss_pred ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874 331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410 (504)
Q Consensus 331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~ 410 (504)
++|++|.+++...+.++..|+++++.+.....+.... ++.++++++|++.++|+++..+.+...
T Consensus 190 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~----------- 253 (511)
T 3e7w_A 190 QAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVL-----FEELKKSGLNVWTSTPSFVQMCLMDPG----------- 253 (511)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHH-----HHHHHHHCCSEEEECHHHHHHHHTSTT-----------
T ss_pred eCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHH-----HHHHHHcCCcEEEecHHHHHHHHhccc-----------
Confidence 9999999998888899999999999776433333222 335889999999999999988765210
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccccee
Q psy6874 411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCAT 489 (504)
Q Consensus 411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~ 489 (504)
. .....+++|.+++||+++++++.+.+++.+ +++++++||+||+++.++
T Consensus 254 ----------------------~--------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 303 (511)
T 3e7w_A 254 ----------------------F--------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVT 303 (511)
T ss_dssp ----------------------C--------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSE
T ss_pred ----------------------c--------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeee
Confidence 0 011126899999999999999999999888 899999999999987766
Q ss_pred ec
Q psy6874 490 VM 491 (504)
Q Consensus 490 ~~ 491 (504)
..
T Consensus 304 ~~ 305 (511)
T 3e7w_A 304 SV 305 (511)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=6.5e-42 Score=364.38 Aligned_cols=299 Identities=21% Similarity=0.235 Sum_probs=240.8
Q ss_pred CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874 88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV 167 (504)
Q Consensus 88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V 167 (504)
+...++.++|++.++++||++|+.+. .+.+||+||.++++++|++|+++|+++||+|
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~-----------------------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V 128 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE-----------------------ADELTYGALNERANRLAHRLVGLGVAPGTLV 128 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC-----------------------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 34568999999999999999999632 2679999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874 168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS 247 (504)
Q Consensus 168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~ 247 (504)
+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+.... .+....++..+..
T Consensus 129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~--- 198 (570)
T 4gr5_A 129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEA--- 198 (570)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-----
T ss_pred EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeeccc---
Confidence 999999999999999999999999999999999999999999999999999865432 1222222211111
Q ss_pred ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV 327 (504)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~ 327 (504)
. ..... ........++|+++|+|||||||.||||+++|+++.+.+.. .....+.++|+
T Consensus 199 ------------------~-~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~ 256 (570)
T 4gr5_A 199 ------------------A-SDAPA--GNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEV 256 (570)
T ss_dssp ------------------------C--CCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCE
T ss_pred ------------------c-ccccc--cccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCE
Confidence 0 00000 22233457799999999999999999999999999877665 35568889999
Q ss_pred EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874 328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP 407 (504)
Q Consensus 328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 407 (504)
+++++|++|..+....+.+++.|+++++.+... .+.... ++.++++++|++.++|+++..+.+...+
T Consensus 257 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~-~~~~~~-----~~~i~~~~vt~~~~~P~~~~~l~~~~~~------- 323 (570)
T 4gr5_A 257 FLQCSPVSWDAFGLELFGALLFGARCVLQSGQN-PDPLEI-----GELVARHGVTMLQLSASLFNFLVDEVPE------- 323 (570)
T ss_dssp EEECSCTTSSTHHHHHHHHHTTTCEEEECSSSS-CCHHHH-----HHHHHHHTCCEEEEEHHHHHHHHHHCGG-------
T ss_pred EEEecCccHHHHHHHHHHHHhcCCEEEEcCCcc-CCHHHH-----HHHHHHcCCcEEEecHHHHHHHHhhchh-------
Confidence 999999999877777888999999999876432 221111 3358899999999999999998763110
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874 408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS 486 (504)
Q Consensus 408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~ 486 (504)
..++||.+++||+++++++.+.++..+ +++++++||+||+++
T Consensus 324 -------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 366 (570)
T 4gr5_A 324 -------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG 366 (570)
T ss_dssp -------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCS
T ss_pred -------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhhee
Confidence 016899999999999999988887766 899999999999987
Q ss_pred ceeec
Q psy6874 487 CATVM 491 (504)
Q Consensus 487 ~~~~~ 491 (504)
.++..
T Consensus 367 ~~~~~ 371 (570)
T 4gr5_A 367 FTTHH 371 (570)
T ss_dssp CSEEE
T ss_pred eeeee
Confidence 76654
No 24
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.5e-42 Score=369.46 Aligned_cols=323 Identities=19% Similarity=0.260 Sum_probs=251.9
Q ss_pred cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874 87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN 166 (504)
Q Consensus 87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~ 166 (504)
.+...|+.++|++.++++||++|+.+.+ .+..+++||+||.++++++|++|+++|+++||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~-------------------~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~ 67 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLN-------------------KELEETMTYEQLDQHAKAIAATLQAEGAKPGDR 67 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEE-------------------TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEc-------------------CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 3456789999999999999999997542 123478999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCC---CHHHHHHhHhcccccEEEEcCCchhHHHHHh-hcCCCceEEEEEc
Q psy6874 167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATL---GEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTPRVSTLIYME 242 (504)
Q Consensus 167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~ 242 (504)
|+++++|+++|+++++||+++|++++|+++.+ ..+++.++++.+++++++++.+..+.+.... ...+....+
T Consensus 68 V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~---- 143 (590)
T 3kxw_A 68 VLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI---- 143 (590)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE----
T ss_pred EEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc----
Confidence 99999999999999999999999999999988 4578999999999999999877554432211 111111111
Q ss_pred CCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC
Q psy6874 243 DQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI 322 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 322 (504)
.+...+++...... ........++|+++|+|||||||.||||++||+++++.+......+++
T Consensus 144 ---------------~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 205 (590)
T 3kxw_A 144 ---------------PAIALESIELNRSS---SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM 205 (590)
T ss_dssp ---------------EEEEGGGCCGGGGG---GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTC
T ss_pred ---------------ceeechhccccccc---cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCC
Confidence 11122221111111 222345678999999999999999999999999999999999888999
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874 323 EPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401 (504)
Q Consensus 323 ~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~ 401 (504)
.++|++++++|++|++++.. ++.+++.|+++++.++.........+ ++.++++++|++.++|.++..+.+.+...
T Consensus 206 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~----~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 281 (590)
T 3kxw_A 206 NDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSW----LKHITKYKATISGSPNFAYDYCVKRIREE 281 (590)
T ss_dssp CTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHH----HHHHHHHTCSEEEECTHHHHHHHHHCCGG
T ss_pred CCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHH----HHHHHHhCCeeecCChhHHHHHHHHhhhh
Confidence 99999999999999999986 78999999999998765332111111 33588999999999999999887642211
Q ss_pred HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC------Cce
Q psy6874 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC------EKV 475 (504)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v 475 (504)
.. .....++||.+++||+++++++.+.++..++ +++
T Consensus 282 ~~--------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~ 323 (590)
T 3kxw_A 282 KK--------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAF 323 (590)
T ss_dssp GG--------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred hc--------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccc
Confidence 10 1112378999999999999999999998873 479
Q ss_pred eeeccccccccceeecc
Q psy6874 476 IQGYGLTETTSCATVMH 492 (504)
Q Consensus 476 ~~~YG~TEt~~~~~~~~ 492 (504)
+++||+||+++.++...
T Consensus 324 ~~~YG~TE~~~~~~~~~ 340 (590)
T 3kxw_A 324 YPCYGLAEATLLVTGGT 340 (590)
T ss_dssp EEEEECGGGSSEEEECC
T ss_pred ccccccccccceeeccc
Confidence 99999999988777543
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.3e-42 Score=361.38 Aligned_cols=304 Identities=17% Similarity=0.191 Sum_probs=243.3
Q ss_pred CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI 169 (504)
Q Consensus 90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai 169 (504)
..|+.++|++.++++|+++|+.+. .+.+||+||.++++++|++|.++|+++||+|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~-----------------------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL-----------------------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecC-----------------------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 458999999999999999999632 267999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874 170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249 (504)
Q Consensus 170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~ 249 (504)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+ .
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~---------------- 116 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E---------------- 116 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------
Confidence 99999999999999999999999999999999999999999999999987643211 0
Q ss_pred ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc--cCCCCCcE
Q psy6874 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA--VHIEPNDV 327 (504)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~ 327 (504)
+.....+.++.................++|+++|+|||||||.||||+++|+|+.+.+...... +.+.++|+
T Consensus 117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~ 190 (521)
T 3l8c_A 117 ------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ 190 (521)
T ss_dssp ------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCE
T ss_pred ------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCe
Confidence 1123334443322211111223345678999999999999999999999999999887776655 67789999
Q ss_pred EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874 328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP 407 (504)
Q Consensus 328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 407 (504)
+++..|++|..++...+.++..|+++++.+.....+.... +..+.++++|++.++|+++..+......
T Consensus 191 ~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~~------- 258 (521)
T 3l8c_A 191 MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL-----FTTIAQLPVGIWTSTPSFADMAMLSDDF------- 258 (521)
T ss_dssp EECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHH-----HHHHHHSCCSEEEECHHHHHHHHTSTTC-------
T ss_pred EEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHH-----HHHHHHcCCcEEEeCCCHHHHHhhhhcc-------
Confidence 9999999999998888899999999998876543333222 3358899999999999999877542100
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874 408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS 486 (504)
Q Consensus 408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~ 486 (504)
.....+++|.+++||+++++++.+.+.+.+ +++++++||+||+++
T Consensus 259 ----------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 304 (521)
T 3l8c_A 259 ----------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV 304 (521)
T ss_dssp ----------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred ----------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence 001126899999999999999999998887 899999999999987
Q ss_pred ceeec
Q psy6874 487 CATVM 491 (504)
Q Consensus 487 ~~~~~ 491 (504)
.++..
T Consensus 305 ~~~~~ 309 (521)
T 3l8c_A 305 ALSAI 309 (521)
T ss_dssp CSEEE
T ss_pred hhcee
Confidence 76654
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.4e-41 Score=364.36 Aligned_cols=296 Identities=16% Similarity=0.138 Sum_probs=237.1
Q ss_pred CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874 89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV 168 (504)
Q Consensus 89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va 168 (504)
...|+.++|++.++++||++|+.+. .+.+||+||.++++++|++|++.|+++||+|+
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~-----------------------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~ 81 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR-----------------------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLG 81 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC-----------------------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3568999999999999999999632 26799999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874 169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST 248 (504)
Q Consensus 169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~ 248 (504)
++++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++....... .....+
T Consensus 82 i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~---------- 144 (620)
T 4dg8_A 82 VYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV---------- 144 (620)
T ss_dssp EESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE----------
T ss_pred EEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee----------
Confidence 999999999999999999999999999999999999999999999999765432210 011100
Q ss_pred cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874 249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF 328 (504)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~ 328 (504)
..... .... .........++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++
T Consensus 145 ------------~~~~~---~~~~-~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~ 207 (620)
T 4dg8_A 145 ------------PVRHL---PAAP-ASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRF 207 (620)
T ss_dssp ------------EGGGC---CCCC-CCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEE
T ss_pred ------------eeccC---CcCC-ccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEE
Confidence 00000 0000 012222346799999999999999999999999999887765 456788999999
Q ss_pred EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874 329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF 408 (504)
Q Consensus 329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~ 408 (504)
++++|++|..++..++.+++.|+++++.+.. ..+.... .+.++++++|++.++|+++..+.+...
T Consensus 208 l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~-----~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------- 272 (620)
T 4dg8_A 208 LVNSPLSFDAATLEIWGALLNGGCCVLNDLG-PLDPGVL-----RQLIGERGADSAWLTASLFNTLVDLDP--------- 272 (620)
T ss_dssp EECSCTTSTHHHHHHHHHHTTTCEEEECCSS-SCCHHHH-----HHHHHTTCCCEEEEEHHHHHHHHHHCG---------
T ss_pred EEECccCHHHHHHHHHHHHhcCCEEEeCccc-cCCHHHH-----HHHHHHhCCcEEEccHHHHHHHHhcCh---------
Confidence 9999999999998889999999999986422 2222222 335889999999999999998865200
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccc
Q psy6874 409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSC 487 (504)
Q Consensus 409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~ 487 (504)
...++||.+++||++++++..+.+...+ +++++|+||+||+++.
T Consensus 273 -----------------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 317 (620)
T 4dg8_A 273 -----------------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTF 317 (620)
T ss_dssp -----------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSC
T ss_pred -----------------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhh
Confidence 0126899999999999988887776554 8999999999999877
Q ss_pred eeec
Q psy6874 488 ATVM 491 (504)
Q Consensus 488 ~~~~ 491 (504)
++..
T Consensus 318 ~~~~ 321 (620)
T 4dg8_A 318 TCCH 321 (620)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 6654
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-42 Score=363.13 Aligned_cols=316 Identities=19% Similarity=0.204 Sum_probs=237.2
Q ss_pred cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874 92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA 171 (504)
Q Consensus 92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~ 171 (504)
|+.++|+++++++||++|+.+. .+++||+||.++++++|++|++. +||+|++++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG-----------------------QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS-----------------------SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEeC-----------------------CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 5667899999999999999632 26799999999999999999987 899999999
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874 172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251 (504)
Q Consensus 172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~ 251 (504)
+|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+......... ....++.+...... . ...
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-~~~ 131 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITT--N-GLL 131 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeeccc--c-ccc
Confidence 9999999999999999999999999999999999999999999999987543321111 01111111111000 0 000
Q ss_pred ccCCCceee-ehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874 252 NFKQGIEIV-PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG 330 (504)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~ 330 (504)
......... ..+......... ........++|+++|+|||||||.||||+++|.++.+.+......+++.++|++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~ 209 (501)
T 3ipl_A 132 DNTMGIQYDTSNETVVPKESPS--NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLS 209 (501)
T ss_dssp ------------------CCHH--HHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEE
T ss_pred ccccccccccchhhccccCCcc--cccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEE
Confidence 000000000 001111000000 11223457899999999999999999999999999999999888889999999999
Q ss_pred ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874 331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410 (504)
Q Consensus 331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~ 410 (504)
++|++|++++...+.+++.|+++++.+....... ++.++++++|++.++|+++..+.+....
T Consensus 210 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------- 271 (501)
T 3ipl_A 210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQI--------LTMIKNERITHISLVPQTLNWLMQQGLH---------- 271 (501)
T ss_dssp CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHSCCCEEEECHHHHHHHHHHTCC----------
T ss_pred eCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHH--------HHHHHHcCCcEEEchHHHHHHHHhcCCC----------
Confidence 9999999999988899999999999875433222 3358899999999999999998763100
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceee
Q psy6874 411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV 490 (504)
Q Consensus 411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~ 490 (504)
...+||.+++||+++++++.+.++. ++++++++||+||+++.++.
T Consensus 272 ----------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~ 316 (501)
T 3ipl_A 272 ----------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLT 316 (501)
T ss_dssp ----------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEE
T ss_pred ----------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceee
Confidence 0127999999999999999999987 59999999999999875554
Q ss_pred cc
Q psy6874 491 MH 492 (504)
Q Consensus 491 ~~ 492 (504)
..
T Consensus 317 ~~ 318 (501)
T 3ipl_A 317 AT 318 (501)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.3e-41 Score=358.79 Aligned_cols=318 Identities=21% Similarity=0.287 Sum_probs=252.6
Q ss_pred cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874 87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN 166 (504)
Q Consensus 87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~ 166 (504)
.++..|+.++|++.++.+|+.+++... .+..+++||+||.++++++|++|+++|+++||+
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~~--------------------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~ 76 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDRR--------------------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDR 76 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECTT--------------------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCE
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCCC--------------------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 456779999999999999998887421 123378999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCC-------HHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEE
Q psy6874 167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLG-------EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLI 239 (504)
Q Consensus 167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii 239 (504)
|+++++|+++|+++++||+++|++++|+++.++ .+++.+++++++++++|++++..+.+.......+.+..
T Consensus 77 V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-- 154 (576)
T 3gqw_A 77 VALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHV-- 154 (576)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEE--
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCccee--
Confidence 999999999999999999999999999999999 89999999999999999999887766665544433221
Q ss_pred EEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc
Q psy6874 240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~ 319 (504)
........... . ........++|+++|+|||||||.||||+++|+++.+.+......
T Consensus 155 --------------------~~~~~~~~~~~-~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~ 211 (576)
T 3gqw_A 155 --------------------LSHAWFKALPE-A--DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD 211 (576)
T ss_dssp --------------------EEHHHHHTSCC-C--CCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT
T ss_pred --------------------cchhhhhcccc-c--ccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc
Confidence 11111111111 1 222334567999999999999999999999999999988877654
Q ss_pred -cCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874 320 -VHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK 396 (504)
Q Consensus 320 -~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 396 (504)
+++.++|++++++|++|++++.. .+.++..|+++++...... .+.... ++.++++++|++.++|.++..+.+
T Consensus 212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~p~~~~~l~~ 286 (576)
T 3gqw_A 212 GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQW-----LKLISKNRGTVSVAPPFGYELCQR 286 (576)
T ss_dssp TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHH-----HHHHHHTTCCEEEECHHHHHHHHH
T ss_pred ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHH-----HHHHHHhCCeEEEcCHHHHHHHHH
Confidence 78999999999999999999985 6678889999988765332 122111 335889999999999999987755
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-----
Q psy6874 397 GVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL----- 471 (504)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~----- 471 (504)
..... .......+++|.+++||+++++++.+.++..+
T Consensus 287 ~~~~~--------------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 328 (576)
T 3gqw_A 287 RVNEK--------------------------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNF 328 (576)
T ss_dssp SCCHH--------------------------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred Hhccc--------------------------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCC
Confidence 22111 11222347899999999999999999999887
Q ss_pred -CCceeeeccccccccceeecc
Q psy6874 472 -CEKVIQGYGLTETTSCATVMH 492 (504)
Q Consensus 472 -~~~v~~~YG~TEt~~~~~~~~ 492 (504)
+++++++||+||+++.++...
T Consensus 329 ~~~~~~~~YG~TE~~~~~~~~~ 350 (576)
T 3gqw_A 329 DNKTFMPCYGLAENALAVSFSD 350 (576)
T ss_dssp CGGGEEEEEECGGGSSEEEECC
T ss_pred CcccccccCCcccccceeeccc
Confidence 789999999999988777654
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.8e-41 Score=356.15 Aligned_cols=318 Identities=15% Similarity=0.122 Sum_probs=239.9
Q ss_pred cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874 87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN 166 (504)
Q Consensus 87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~ 166 (504)
+....|+.++|+++++++||++|+.+.+-.. ....+..+.+||+||.++++++|+.|.+.|+ +||+
T Consensus 16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~-------------~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~ 81 (562)
T 3ite_A 16 YTSTVPPSHYIETWAKTHPEWKAVEVATGFL-------------GSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRA 81 (562)
T ss_dssp --CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCE
T ss_pred ecccCCHHHHHHHHHHHCCCchhhhcccccc-------------cccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCE
Confidence 3445688999999999999999997532000 0011234789999999999999999999999 7999
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874 167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246 (504)
Q Consensus 167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~ 246 (504)
|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+ ..+....++..+.
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~--- 153 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN--- 153 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC---
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc---
Confidence 99999999999999999999999999999999999999999999999999987654321 1111111111110
Q ss_pred cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc-------
Q psy6874 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA------- 319 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~------- 319 (504)
..+.+....... ........++++++|+|||||||.||||+++|+++.+.+......
T Consensus 154 -------------~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 217 (562)
T 3ite_A 154 -------------QSFIENLSTQDT---SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPK 217 (562)
T ss_dssp -------------HHHHHHHHHSCC---SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGG
T ss_pred -------------hhhhhhcccccc---cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccch
Confidence 112222222211 222234457899999999999999999999999998877665432
Q ss_pred -cCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874 320 -VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV 398 (504)
Q Consensus 320 -~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~ 398 (504)
..+...|++++..|++|..++...+.++..|+++++.+.....+.. ...++++++|++.++|++++.+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~-------~~~i~~~~~t~~~~~P~~l~~~~~~- 289 (562)
T 3ite_A 218 SLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDL-------PRTFRELGVTHAGIVPSLLDQTGLV- 289 (562)
T ss_dssp GGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSH-------HHHHHHTTCCEEEECHHHHHHHTCC-
T ss_pred hcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHH-------HHHHHHcCCCEEEcCHHHHhhcccC-
Confidence 4578899999999999999888888899999999987654432221 2358899999999999987654210
Q ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeee
Q psy6874 399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQG 478 (504)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~ 478 (504)
....++||.+++||+++++++.+.++..++++++++
T Consensus 290 --------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~ 325 (562)
T 3ite_A 290 --------------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNV 325 (562)
T ss_dssp --------------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEE
T ss_pred --------------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEe
Confidence 001268999999999999999999998889999999
Q ss_pred ccccccccceeecccC
Q psy6874 479 YGLTETTSCATVMHLN 494 (504)
Q Consensus 479 YG~TEt~~~~~~~~~~ 494 (504)
||+||+++.++.....
T Consensus 326 YG~TE~~~~~~~~~~~ 341 (562)
T 3ite_A 326 YGPTEVTIGCSAGRIL 341 (562)
T ss_dssp ECCGGGCSCSEEEECC
T ss_pred eccchheeeeeeeeec
Confidence 9999998776665443
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.4e-39 Score=374.28 Aligned_cols=303 Identities=20% Similarity=0.252 Sum_probs=245.8
Q ss_pred CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874 91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF 170 (504)
Q Consensus 91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~ 170 (504)
.++.++|++.++++||++|+.+. .+.+||+||.++++++|+.|++.|+++|++|+|+
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~~-----------------------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~ 520 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTYS-----------------------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALY 520 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEESS-----------------------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC-----------------------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence 58999999999999999999632 2579999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874 171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT 250 (504)
Q Consensus 171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~ 250 (504)
++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.+..+.+. ..+.....+.+++.
T Consensus 521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~------ 590 (1304)
T 2vsq_A 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQ------ 590 (1304)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCG------
T ss_pred eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEeccc------
Confidence 99999999999999999999999999999999999999999999999987543321 12222233332221
Q ss_pred cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874 251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG 330 (504)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~ 330 (504)
... .... ..+.....++++++|+|||||||.||||+++|+|+.+. ......+.+.++|+++.
T Consensus 591 ------------~~~---~~~~--~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~ 652 (1304)
T 2vsq_A 591 ------------TRF---EEQA--SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLS 652 (1304)
T ss_dssp ------------GGG---GSCS--SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEE
T ss_pred ------------ccc---cccc--CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEE
Confidence 000 0000 22233457899999999999999999999999999876 44556678899999999
Q ss_pred ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874 331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410 (504)
Q Consensus 331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~ 410 (504)
+.|++|..+...++.+++.|+++++.+.....+.... .+.++++++|++.++|+++..+.+....
T Consensus 653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l-----~~~i~~~~vt~~~~~p~~~~~l~~~~~~---------- 717 (1304)
T 2vsq_A 653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERL-----TDLILQENVNVMFATTALFNLLTDAGED---------- 717 (1304)
T ss_dssp CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHH-----HHHHHHHTCCEEEEEHHHHHHHHHHCSH----------
T ss_pred ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHH-----HHHHHHcCCcEEEccHHHHHHHHhhchh----------
Confidence 9999999988888999999999999887655554333 3358899999999999999988652100
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccccee
Q psy6874 411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCAT 489 (504)
Q Consensus 411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~ 489 (504)
. .++||.+++||+++++++.+.+...+ +++++|+||+||+++.++
T Consensus 718 --------------------------~--------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 763 (1304)
T 2vsq_A 718 --------------------------W--------MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFAT 763 (1304)
T ss_dssp --------------------------H--------HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSE
T ss_pred --------------------------c--------CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhe
Confidence 0 04799999999999999999887776 478999999999988777
Q ss_pred eccc
Q psy6874 490 VMHL 493 (504)
Q Consensus 490 ~~~~ 493 (504)
....
T Consensus 764 ~~~~ 767 (1304)
T 2vsq_A 764 AHVV 767 (1304)
T ss_dssp EEEC
T ss_pred eeec
Confidence 6543
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.8e-40 Score=347.98 Aligned_cols=307 Identities=22% Similarity=0.261 Sum_probs=234.3
Q ss_pred CCCCcHHHHHHHHHHhCCC-CcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874 88 DGVDTMEKVLRYVVTRFSD-QRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN 166 (504)
Q Consensus 88 ~~~~tl~~~~~~~~~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~ 166 (504)
..+.++.+.|+++++++|+ ++|+.+. + +.+||+||.++++++|++|. .|++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----------------------~-~~~Ty~eL~~~~~~~A~~L~-----~~~~ 70 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----------------------E-RSLTYAELAAAAGATAGRIG-----GAGR 70 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----------------------T-EEEEHHHHHHHHHHHHTTCC--------C
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----------------------C-eeeeHHHHHHHHHHHHhhcc-----CCCE
Confidence 3466788888888888887 9999632 2 68999999999999999874 3889
Q ss_pred EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874 167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246 (504)
Q Consensus 167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~ 246 (504)
|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+... . .....+..+. ++..
T Consensus 71 V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~---~~~~~~~~~~-~~~~-- 142 (505)
T 3nyq_A 71 VAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--P---PALGALERVD-VDVR-- 142 (505)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--C---GGGTTSEEEE-CCTT--
T ss_pred EEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--c---hhhccccccc-cccc--
Confidence 999999999999999999999999999999999999999999999999999865210 0 0111222111 1110
Q ss_pred cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCc
Q psy6874 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d 326 (504)
.. . ..+.....++|+++|+|||||||.||||+++|+++.+.+......+++.++|
T Consensus 143 ----------------------~~-~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 197 (505)
T 3nyq_A 143 ----------------------AR-G--AVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGED 197 (505)
T ss_dssp ----------------------CC-C--CCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTC
T ss_pred ----------------------cc-c--CCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCc
Confidence 00 0 1222345678999999999999999999999999999999988888999999
Q ss_pred EEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhcc
Q psy6874 327 VFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA 405 (504)
Q Consensus 327 ~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~ 405 (504)
++++.+|++|..++.. ++.++..|+++++.+....... +..+ ++++|++.++|+++..+.+......
T Consensus 198 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~--- 265 (505)
T 3nyq_A 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGA--------AREL-NDGATMLFGVPTMYHRIAETLPADP--- 265 (505)
T ss_dssp EEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHH--------HHHH-TTTCCEEEECHHHHHHHHHHGGGCH---
T ss_pred EEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHH--------HHHH-hhCCeEEEehHHHHHHHHHhhhcCc---
Confidence 9999999999999874 7899999999998865433322 1235 6799999999999999876421110
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccc
Q psy6874 406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT 485 (504)
Q Consensus 406 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~ 485 (504)
.. ....+++|.+++||+++++++.++++..+++++++.||+||++
T Consensus 266 -~~----------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (505)
T 3nyq_A 266 -EL----------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL 310 (505)
T ss_dssp -HH----------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred -hh----------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcc
Confidence 00 0011479999999999999999999998999999999999998
Q ss_pred cceeecccCCCCCccCCC
Q psy6874 486 SCATVMHLNDMGNINSNG 503 (504)
Q Consensus 486 ~~~~~~~~~d~~~~~s~G 503 (504)
+.++..... ....+++|
T Consensus 311 ~~~~~~~~~-~~~~~~vG 327 (505)
T 3nyq_A 311 MNTSVRADG-EPRAGTVG 327 (505)
T ss_dssp EEEECCTTS-CCCTTCCC
T ss_pred cccccCCCC-CCCCCCcc
Confidence 665554332 23444555
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.94 E-value=6.7e-27 Score=233.82 Aligned_cols=160 Identities=23% Similarity=0.278 Sum_probs=136.7
Q ss_pred CCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccc
Q psy6874 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMI 362 (504)
Q Consensus 283 ~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~ 362 (504)
.+|+++|+|||||||.||||++||+|+.+.+......++++++|++++++|++|++++...+.+++.|+++++.++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~-- 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTA-- 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCS--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccc--
Confidence 378999999999999999999999999999999989999999999999999999999998889999999999876532
Q ss_pred cchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHH
Q psy6874 363 DTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTK 442 (504)
Q Consensus 363 ~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 442 (504)
+. +..++++++|++.++|+++..+.+....
T Consensus 114 ~~--------~~~i~~~~~t~~~~~P~~l~~ll~~~~~------------------------------------------ 143 (358)
T 4gs5_A 114 NP--------LAGLDHADFDFVAMVPMQLQSILENSAT------------------------------------------ 143 (358)
T ss_dssp CT--------TTTCSSCCCSEEEECHHHHHHHHHCTTT------------------------------------------
T ss_pred cH--------HHHHHHhCCeEEEcChHHHHHhhccccc------------------------------------------
Confidence 11 2358899999999999999998763110
Q ss_pred HhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeecccCC
Q psy6874 443 KLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495 (504)
Q Consensus 443 ~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d 495 (504)
....++||.+++||+++++++.++++. ++++++++||+||+++.++....++
T Consensus 144 ~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~ 195 (358)
T 4gs5_A 144 SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNG 195 (358)
T ss_dssp GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSS
T ss_pred cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccc
Confidence 001268999999999999999999987 5999999999999988777765544
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.88 E-value=2.2e-22 Score=206.70 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=129.9
Q ss_pred CCCC-CCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh---ccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEE
Q psy6874 280 PPTP-KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD---AVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIG 354 (504)
Q Consensus 280 ~~~~-~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~ 354 (504)
...+ +++++|+|||||||.||||+++|.++.+....+.. ..++.++|++++++|+.|..+.+ ..+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 89999999999999999999999999877665533 44889999999999998766655 4678899999999
Q ss_pred EcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhh
Q psy6874 355 YSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLID 434 (504)
Q Consensus 355 ~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 434 (504)
+.+....... ++.+++++||++.++|+++..+.+.........
T Consensus 161 ~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------- 203 (436)
T 3qov_A 161 PAAAGNSKRQ--------IKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------- 203 (436)
T ss_dssp CCCSCCHHHH--------HHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------
T ss_pred eCCCCCHHHH--------HHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------
Confidence 8765433222 335889999999999999999987543221100
Q ss_pred HHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874 435 KVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC 487 (504)
Q Consensus 435 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~ 487 (504)
..+++|.+++||+++++++.++++..||++++++||+||+++.
T Consensus 204 ----------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~ 246 (436)
T 3qov_A 204 ----------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGP 246 (436)
T ss_dssp ----------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEE
T ss_pred ----------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCC
Confidence 0268999999999999999999999999999999999999654
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.88 E-value=3.6e-22 Score=205.20 Aligned_cols=161 Identities=15% Similarity=0.083 Sum_probs=129.7
Q ss_pred CCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh---hccCCCCCcEEEEecCh-HHHHHHHHHHHHHHhCCeEEE
Q psy6874 280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS---DAVHIEPNDVFLGYLPL-AHVFELLSESVCLLCGVAIGY 355 (504)
Q Consensus 280 ~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~v~~ 355 (504)
...++++++++|||||||.||||+++|.++......+. ..+++.++|++++.+|+ +|..++...+.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34668999999999999999999999999887665443 34678899999999999 788887777889999999987
Q ss_pred cCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhH
Q psy6874 356 STPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDK 435 (504)
Q Consensus 356 ~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 435 (504)
.+....... ++.+++++||+++++|+++..+.+...+....
T Consensus 166 ~~~~~~~~~--------~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------------------- 206 (437)
T 2y27_A 166 FGGGQTEKQ--------VQLIQDFRPDIIMVTPSYMLSIADEIERQGLD------------------------------- 206 (437)
T ss_dssp CCSCCHHHH--------HHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred CCCCCHHHH--------HHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-------------------------------
Confidence 765432221 33588999999999999999998754321100
Q ss_pred HhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874 436 VVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC 487 (504)
Q Consensus 436 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~ 487 (504)
...+++|.+++||+++++++.++++..+|++++++||+||+++.
T Consensus 207 --------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~ 250 (437)
T 2y27_A 207 --------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGP 250 (437)
T ss_dssp --------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEE
T ss_pred --------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCC
Confidence 00158999999999999999999998889999999999998543
No 35
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.87 E-value=2.5e-22 Score=201.69 Aligned_cols=167 Identities=17% Similarity=0.172 Sum_probs=125.0
Q ss_pred CCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh---hccCCCCCcEEEEecCh-HHHHHHHHHHHHHHhCCeEEEc
Q psy6874 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS---DAVHIEPNDVFLGYLPL-AHVFELLSESVCLLCGVAIGYS 356 (504)
Q Consensus 281 ~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~v~~~ 356 (504)
..++++++|+|||||||.||+|+++|.++........ ...++.++|++++++|+ +|+.++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999998887543 45578899999999999 99999988777789999 5554
Q ss_pred Cccccc------cc---------hhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy6874 357 TPLTMI------DT---------SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKR 421 (504)
Q Consensus 357 ~~~~~~------~~---------~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~ 421 (504)
...... .. ...+....++.+++++||++.++|+++..+.+....
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------- 225 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--------------------- 225 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH---------------------
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh---------------------
Confidence 321111 00 000000112357899999999999999998764110
Q ss_pred HHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHH-HHh-CCceeeecccccccccee
Q psy6874 422 KWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIK-VCL-CEKVIQGYGLTETTSCAT 489 (504)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TEt~~~~~ 489 (504)
.....+++|.+++||+++++++.+.++ +.| ++++++.||+||+++.+.
T Consensus 226 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~ 275 (369)
T 3hgu_A 226 --------------------VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSR 275 (369)
T ss_dssp --------------------HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEE
T ss_pred --------------------hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhccee
Confidence 001114899999999999999999999 888 899999999999876553
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.87 E-value=6.9e-22 Score=203.50 Aligned_cols=177 Identities=11% Similarity=0.058 Sum_probs=135.9
Q ss_pred eeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh---ccCCCCCcEEEEecCh-
Q psy6874 259 IVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD---AVHIEPNDVFLGYLPL- 334 (504)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl- 334 (504)
+.+.+++.+... .......++++++++|||||||.||||+++|.++......... .+++.++|++++.+|+
T Consensus 72 ~~~~~~l~~~~p-----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 72 FSTKNDLRDNYP-----FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYG 146 (443)
T ss_dssp CBCHHHHHTTTT-----TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCS
T ss_pred CCcHHHHHhhCC-----CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCc
Confidence 455666654321 1122346689999999999999999999999998876554433 5688999999999999
Q ss_pred HHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHH
Q psy6874 335 AHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFA 414 (504)
Q Consensus 335 ~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~ 414 (504)
.|..++...+.++..|+++++.+....... ++.+++++||++.++|+++..+.+...+....
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~---------- 208 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQ--------VQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD---------- 208 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCCHHHH--------HHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC----------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCCHHHH--------HHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC----------
Confidence 577777777889999999988765432222 33588999999999999999987753321100
Q ss_pred HHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874 415 FAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC 487 (504)
Q Consensus 415 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~ 487 (504)
...+++|.+++||+++++++.+++++.+|++++++||+||+++.
T Consensus 209 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~ 252 (443)
T 2y4o_A 209 -----------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGP 252 (443)
T ss_dssp -----------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEE
T ss_pred -----------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCC
Confidence 00158999999999999999999998899999999999998543
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.68 E-value=1.1 Score=44.66 Aligned_cols=107 Identities=10% Similarity=0.094 Sum_probs=81.1
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR--AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~--~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+..+++.+...|+.++|++..+.+-. ...+...++++..|+.++++.. ..++.+...+++.++++
T Consensus 107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 185 (437)
T 2y27_A 107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDI 185 (437)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCE
Confidence 35789999988888888888788999999999888853 3344557788899999887665 47899999999999999
Q ss_pred EEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874 215 VITTHDLLPKFRNILK------LTPRVSTLIYMEDQ 244 (504)
Q Consensus 215 vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~ 244 (504)
++..+..+..+.+... ..+.++.+++-.+.
T Consensus 186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 9988876655544321 12567777766543
No 38
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.52 E-value=1.1 Score=44.84 Aligned_cols=107 Identities=8% Similarity=-0.026 Sum_probs=82.2
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--CHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET--RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n--~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+..+++.+...|+.++|++..+.+- ....+..+++++..|+.+++.+. ..++.+...+++.++++
T Consensus 103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~ 181 (436)
T 3qov_A 103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTA 181 (436)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCE
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCE
Confidence 4678999999999889888888899999999998874 34445567888899999887765 46789999999999999
Q ss_pred EEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874 215 VITTHDLLPKFRNILK------LTPRVSTLIYMEDQ 244 (504)
Q Consensus 215 vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~ 244 (504)
++..+..+..+.+... ..+.++.+++-.+.
T Consensus 182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 9988876655544321 14567777776554
No 39
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.89 E-value=1.3 Score=44.26 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=81.0
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR--AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~--~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+..+++.+...|+.++|++..+++-+ ...+...++++..|+.++++... .++.+...+++.++++
T Consensus 109 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 187 (443)
T 2y4o_A 109 VVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKI 187 (443)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcE
Confidence 35689999988888888888788999999999888853 34445677888899998877654 7899999999999999
Q ss_pred EEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874 215 VITTHDLLPKFRNILK------LTPRVSTLIYMEDQ 244 (504)
Q Consensus 215 vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~ 244 (504)
++..+..+..+.+... ..+.++.+++-.+.
T Consensus 188 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 188 ILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 9988776655543321 12567777766543
No 40
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=76.23 E-value=28 Score=35.37 Aligned_cols=104 Identities=8% Similarity=-0.089 Sum_probs=75.8
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHH---HHHHHHhCCCeEEEecCCCCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI---AAQACFKQNIPVVTIYATLGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~---~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+...+..+... .++.++|++..++|-+-.+-. .+++++..|+.++..+ ...++.+...+++.+++
T Consensus 199 gV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 274 (539)
T 1mdb_A 199 LIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVT 274 (539)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCS
T ss_pred EEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCe
Confidence 4678999887776655543 478899999888886644332 4788889999988765 46789999999999999
Q ss_pred EEEEcCCchhHHHHHh----hcCCCceEEEEEcCC
Q psy6874 214 IVITTHDLLPKFRNIL----KLTPRVSTLIYMEDQ 244 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~~ 244 (504)
++...+..+..+.+.. ...+.++.+++-.+.
T Consensus 275 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred EEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 9998877665544332 235677877766553
No 41
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=75.01 E-value=12 Score=38.39 Aligned_cols=105 Identities=9% Similarity=0.004 Sum_probs=73.9
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHH--HHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM--IAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~--~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+......+...++.++|++..++|-.-.+- ..+++++ .|+.++..+ ...++.+...+++.++++
T Consensus 209 gv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 286 (548)
T 2d1s_A 209 GVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS 286 (548)
T ss_dssp CEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred EEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence 367899988777666554433368889999988887654432 3356667 999888775 578999999999999999
Q ss_pred EEEcCCchhHHHHHh----hcCCCceEEEEEcC
Q psy6874 215 VITTHDLLPKFRNIL----KLTPRVSTLIYMED 243 (504)
Q Consensus 215 vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 243 (504)
++..+..+..+.+.. ...+.++.+++-.+
T Consensus 287 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 287 VILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp EEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred EEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 998877665554321 13456777666544
No 42
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=71.10 E-value=27 Score=35.53 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=75.5
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHH---HHHHHHhCCCeEEEecCCCCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI---AAQACFKQNIPVVTIYATLGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~---~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+...+..+... .++.++|++..++|....+-. .+++.+..|+.++..+ ...++.+...+++.+++
T Consensus 208 gv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 283 (544)
T 3o83_A 208 LIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVN 283 (544)
T ss_dssp EEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCC
T ss_pred eEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCC
Confidence 4678999888777666553 588999999999886655443 3678888999887765 46788899999999999
Q ss_pred EEEEcCCchhHHHHHh----hcCCCceEEEEEcCC
Q psy6874 214 IVITTHDLLPKFRNIL----KLTPRVSTLIYMEDQ 244 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~~ 244 (504)
++...+..+..+.+.. ...+.++.+++-.+.
T Consensus 284 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 284 MASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp EEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred EEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 9998876554443321 234567777766543
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=70.37 E-value=10 Score=36.48 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=70.5
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--HHHHHHHHHHHhCCCeEEEecCCCCHH--------------
Q psy6874 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR--AEWMIAAQACFKQNIPVVTIYATLGEE-------------- 201 (504)
Q Consensus 138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~--~e~~~~~lA~~~~G~~~v~i~~~l~~~-------------- 201 (504)
..+|.+.+...+..+++.+...|+.++|++..+++-+ .--+...+++...|+.+++. .+.++
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 5678888888888777777778999999999988862 22334445558889855553 33444
Q ss_pred ---------HHHHhHhcccccEEEEcCCchhHHHHH----hhcCCCceEEEEEcCC
Q psy6874 202 ---------AIAHGINETEVNIVITTHDLLPKFRNI----LKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 202 ---------~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~l~~ii~~~~~ 244 (504)
.+...+++.++.+++..+..+..+.+. ....+.++.+++-.+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE 242 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence 677789999999999877654433221 1123456666665543
No 44
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=68.98 E-value=24 Score=35.71 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=72.8
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHH--HHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIA--AQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~--~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+..+... .++.++|++...+|-.-.+-.. +++++ .|+..+.. +...++.+...+++.++.+
T Consensus 187 gV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~ 261 (517)
T 3r44_A 187 GVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCI 261 (517)
T ss_dssp EEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCE
T ss_pred eeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeE
Confidence 4678998888777666554 4889999999888876544332 44444 78887766 4578999999999999999
Q ss_pred EEEcCCchhHHHHH----hhcCCCceEEEEEcCC
Q psy6874 215 VITTHDLLPKFRNI----LKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 215 vi~~~~~~~~~~~~----~~~~~~l~~ii~~~~~ 244 (504)
+...+..+..+... ....+.++.++.-++.
T Consensus 262 ~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 262 GGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp EEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred EEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 99887766544332 1235677777765543
No 45
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=66.81 E-value=20 Score=36.10 Aligned_cols=103 Identities=7% Similarity=-0.016 Sum_probs=73.5
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCC--CCCCeEEEEcCCCHHHH--HHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQ--EPRHNVVIFAETRAEWM--IAAQACFKQNIPVVTIYATLGEEAIAHGINETEV 212 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv--~~gd~Vai~~~n~~e~~--~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~ 212 (504)
...+|.+.+...+..+.. ..|+ .++|++...+|-.-.+- ..+++.+..|+.++..+. ..++.+...+++.++
T Consensus 170 gV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~ 245 (504)
T 1t5h_X 170 AAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQV 245 (504)
T ss_dssp EEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTC
T ss_pred EEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCC
Confidence 357888888776665543 3567 78888888887664443 346788889999887754 778999999999999
Q ss_pred cEEEEcCCchhHHHHHh-h-----cCCCceEEEEEcC
Q psy6874 213 NIVITTHDLLPKFRNIL-K-----LTPRVSTLIYMED 243 (504)
Q Consensus 213 ~~vi~~~~~~~~~~~~~-~-----~~~~l~~ii~~~~ 243 (504)
++++..+..+..+.... . ..+.++.+++-.+
T Consensus 246 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp CEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCT
T ss_pred eEEEeChHHHHHHHhhhccccccccCccccEEEEcCC
Confidence 99998877666554433 1 2456777766544
No 46
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=65.12 E-value=1.6 Score=45.31 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=36.8
Q ss_pred CCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCC-CCcceEEecHHHHHH
Q psy6874 255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGST-GTPKGVVLTHDNMIS 311 (504)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTT-G~PKgV~~th~~l~~ 311 (504)
..+.+.+++++....+.-.......-..++.+..+.-||||| |.||-+.+|...+-.
T Consensus 70 ~~VPv~~Yedl~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 70 SKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp HHSCCBCHHHHHHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred HhCCCccHHHHHHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 345677777765432111001111223567788999999999 889999999987654
No 47
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=64.39 E-value=65 Score=33.32 Aligned_cols=104 Identities=10% Similarity=-0.031 Sum_probs=74.6
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHH---HHHHHHhCCCeEEEecCCCCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI---AAQACFKQNIPVVTIYATLGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~---~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+...+...... .++.++|++..+++-+..+-. .+++++..|+.++.... ..++.+...+++.+++
T Consensus 201 gV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t 276 (617)
T 3rg2_A 201 LIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVN 276 (617)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCC
T ss_pred EeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCc
Confidence 4678998887777665554 478899999998886544433 36788888998887654 5788888999999999
Q ss_pred EEEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874 214 IVITTHDLLPKFRNILK------LTPRVSTLIYMEDQ 244 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~ 244 (504)
++...+..+..+.+... ..+.++.+++-++.
T Consensus 277 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 277 VTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp EEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred EEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 99988766554433221 35567777776554
No 48
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=62.33 E-value=2.1 Score=44.20 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred CCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCC-CCcceEEecHHHHHH
Q psy6874 254 KQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGST-GTPKGVVLTHDNMIS 311 (504)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTT-G~PKgV~~th~~l~~ 311 (504)
...+.+.+++++...-+.-.......-..++.+....-||||| |.||-+.+|...+-.
T Consensus 68 ~~~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 68 KSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp HHHSCCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 3445677788765432111001112234567788899999999 789999999987644
No 49
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=60.64 E-value=56 Score=32.65 Aligned_cols=103 Identities=11% Similarity=0.008 Sum_probs=73.4
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~v 215 (504)
...+|.+.+...+..+.. ..++.++|++..++|-.-.+ +..+++++..|+.++..+ ...++.+...+++.+++++
T Consensus 180 gv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 255 (501)
T 3ipl_A 180 AVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHI 255 (501)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEE
T ss_pred EEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEE
Confidence 367899888877666554 45889999998888765433 233567788899888765 4789999999999999999
Q ss_pred EEcCCchhHHHHHhhc-CCCceEEEEEcC
Q psy6874 216 ITTHDLLPKFRNILKL-TPRVSTLIYMED 243 (504)
Q Consensus 216 i~~~~~~~~~~~~~~~-~~~l~~ii~~~~ 243 (504)
...+..+..+.+.... ...++.+++-.+
T Consensus 256 ~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 256 SLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp EECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred EchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 9988766655443221 125666665544
No 50
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=60.00 E-value=29 Score=35.38 Aligned_cols=107 Identities=8% Similarity=0.035 Sum_probs=74.5
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~v 215 (504)
...+|.+.+...+......+...++.+++++..++|-.-.+ +...++++..|+.++... ...++.+...+++.+++++
T Consensus 207 gV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 285 (550)
T 3rix_A 207 GVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSA 285 (550)
T ss_dssp EEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEE
T ss_pred hhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEE
Confidence 46788888776655544433335788999998888766432 344567788899888764 5788999999999999999
Q ss_pred EEcCCchhHHHHHh----hcCCCceEEEEEcCC
Q psy6874 216 ITTHDLLPKFRNIL----KLTPRVSTLIYMEDQ 244 (504)
Q Consensus 216 i~~~~~~~~~~~~~----~~~~~l~~ii~~~~~ 244 (504)
...+..+..+.... ...+.++.+++-.+.
T Consensus 286 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 286 LLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp EECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred EeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 98877655443321 134667777765543
No 51
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=58.61 E-value=37 Score=34.48 Aligned_cols=106 Identities=8% Similarity=-0.086 Sum_probs=72.4
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHH-HHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI-AAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~-~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~v 215 (504)
...+|.+.+...+.... .....++.++|++..++|-.-.+-. ..++++..|+..+.....+.++.+...+++.+++++
T Consensus 193 gV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~ 271 (541)
T 1v25_A 193 GVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT 271 (541)
T ss_dssp EEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEE
T ss_pred EeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEE
Confidence 35688887754433211 1123578899999888876543322 456778889998887767789999999999999999
Q ss_pred EEcCCchhHHHHHh----hcCCCceEEEEEcC
Q psy6874 216 ITTHDLLPKFRNIL----KLTPRVSTLIYMED 243 (504)
Q Consensus 216 i~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 243 (504)
...+..+..+.+.. ...+.++.+++-.+
T Consensus 272 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 272 AGVPTVWLALADYLESTGHRLKTLRRLVVGGS 303 (541)
T ss_dssp EECHHHHHHHHHHHHHHTCCCSSCCEEEECSS
T ss_pred ecchHHHHHHHhhhhccCCcchhccEEEECCC
Confidence 98877665543322 23566777776544
No 52
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=58.47 E-value=55 Score=33.23 Aligned_cols=103 Identities=10% Similarity=-0.055 Sum_probs=73.9
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~v 215 (504)
...+|.+.+...+..++.. .++.++|++..++|-.-.+ +..++.++..|+..+... ...++.+...+++.+++++
T Consensus 197 gV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 272 (549)
T 3g7s_A 197 GVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFS 272 (549)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEE
T ss_pred eEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEE
Confidence 4678999998887777664 4788999998888765433 223566777888887765 6788999999999999999
Q ss_pred EEcCCchhHHHHHhh------cCCCceEEEEEcC
Q psy6874 216 ITTHDLLPKFRNILK------LTPRVSTLIYMED 243 (504)
Q Consensus 216 i~~~~~~~~~~~~~~------~~~~l~~ii~~~~ 243 (504)
...+..+..+.+... ..+.++.++.-.+
T Consensus 273 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~ 306 (549)
T 3g7s_A 273 WAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306 (549)
T ss_dssp EECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESS
T ss_pred EeCCHHHHHHHhhhhhhcccCCccceeEEEeCCc
Confidence 998876655543321 2345666666544
No 53
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=58.41 E-value=3.2 Score=42.97 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=38.2
Q ss_pred cCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCC-CCcceEEecHHHHHH
Q psy6874 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGST-GTPKGVVLTHDNMIS 311 (504)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTT-G~PKgV~~th~~l~~ 311 (504)
+...+.+.+++++...-+.-.......-..++.+.+..-||||| |.+|-+.+|...+-.
T Consensus 62 F~~~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 62 FKKNVPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp HHHHSCCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 34456778888864432211101111224567788999999999 789999999997644
No 54
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=55.00 E-value=62 Score=33.11 Aligned_cols=105 Identities=5% Similarity=-0.040 Sum_probs=70.9
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHH--HHHHHHHhCCCeEEEecC-CCCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM--IAAQACFKQNIPVVTIYA-TLGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~--~~~lA~~~~G~~~v~i~~-~l~~~~l~~~l~~~~~~ 213 (504)
...+|.+ +........ ....|+.++|++..+++-.-.+- ..+++.+..|+..+.... .+.++.+...+++.+++
T Consensus 223 gV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t 299 (570)
T 3c5e_A 223 MAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK 299 (570)
T ss_dssp EEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCC
T ss_pred EEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCe
Confidence 3568887 433111111 24568899999988887764433 246777888988887764 67899999999999999
Q ss_pred EEEEcCCchhHHHHHh---hcCCCceEEEEEcCC
Q psy6874 214 IVITTHDLLPKFRNIL---KLTPRVSTLIYMEDQ 244 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~---~~~~~l~~ii~~~~~ 244 (504)
+++..+..+..+.+.. ...+.++.++.-.+.
T Consensus 300 ~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 300 SMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp EEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred EEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 9998877655544321 124567777766553
No 55
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=54.52 E-value=48 Score=33.30 Aligned_cols=104 Identities=8% Similarity=0.056 Sum_probs=72.6
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCC--CCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYAT--LGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~--l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+...+..+.. ..++.++|++..++|-+..+ +..+++++..|+.++..... ..++.+...+++.+++
T Consensus 160 gV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 236 (511)
T 3e7w_A 160 GVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLN 236 (511)
T ss_dssp EEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCS
T ss_pred EEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCc
Confidence 357898888776665544 46788999999988876443 34577888999998877543 5678899999999999
Q ss_pred EEEEcCCchhHHHHHh----hcCCCceEEEEEcC
Q psy6874 214 IVITTHDLLPKFRNIL----KLTPRVSTLIYMED 243 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 243 (504)
++...+..+..+.... ...+.++.+++..+
T Consensus 237 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 237 VWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp EEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred EEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 9988776554433211 12345666665544
No 56
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=52.82 E-value=51 Score=33.70 Aligned_cols=103 Identities=8% Similarity=-0.032 Sum_probs=72.7
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCH-HHHHHHHHHHhCCCeEEEecC-CCCHHHHHHhHhcccccEE
Q psy6874 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRA-EWMIAAQACFKQNIPVVTIYA-TLGEEAIAHGINETEVNIV 215 (504)
Q Consensus 138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~-e~~~~~lA~~~~G~~~v~i~~-~l~~~~l~~~l~~~~~~~v 215 (504)
..+|.+.+...+.. ....++.++|++..+++-+- -....+++.+..|+..+.... ...++.+...+++.+++++
T Consensus 232 V~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~ 307 (570)
T 4gr5_A 232 VMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTML 307 (570)
T ss_dssp EEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEE
T ss_pred EEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEE
Confidence 56888877433221 22358889999998888753 344567788889998887754 5678899999999999999
Q ss_pred EEcCCchhHHHHH-hhcCCCceEEEEEcCC
Q psy6874 216 ITTHDLLPKFRNI-LKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 216 i~~~~~~~~~~~~-~~~~~~l~~ii~~~~~ 244 (504)
...+..+..+.+. ....+.++.+++-.+.
T Consensus 308 ~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 308 QLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp EEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred EecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 9887766554432 2345677877776553
No 57
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=51.06 E-value=55 Score=33.45 Aligned_cols=104 Identities=7% Similarity=-0.075 Sum_probs=72.8
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHH--HHHHHHhCCCeEEEecCCC---CHHHHHHhHhccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI--AAQACFKQNIPVVTIYATL---GEEAIAHGINETE 211 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~--~~lA~~~~G~~~v~i~~~l---~~~~l~~~l~~~~ 211 (504)
...+|.+.+...+..+.. ..++.++|++..++|-.-.+-. .+++.+..|+..+...+.. .++.+...+++.+
T Consensus 184 gV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~ 260 (590)
T 3kxw_A 184 GVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYK 260 (590)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHT
T ss_pred EEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhC
Confidence 467899988877766655 4588999999998887755433 3678888899888776532 5778889999999
Q ss_pred ccEEEEcCCchhHHHHHh-------hcCCCceEEEEEcC
Q psy6874 212 VNIVITTHDLLPKFRNIL-------KLTPRVSTLIYMED 243 (504)
Q Consensus 212 ~~~vi~~~~~~~~~~~~~-------~~~~~l~~ii~~~~ 243 (504)
++++.........+.+.. ...+.++.++.-.+
T Consensus 261 ~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 261 ATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp CSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred CeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 998887665544433321 12456666666544
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=50.11 E-value=32 Score=34.61 Aligned_cols=104 Identities=6% Similarity=0.040 Sum_probs=72.6
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCC--CCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYAT--LGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~--l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+...+..... ..++.++|++..++|-+..+ +..+++++..|+.++.++.. ..++.+...+++.+++
T Consensus 161 gv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 237 (512)
T 3fce_A 161 GVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQ 237 (512)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCC
T ss_pred eEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCc
Confidence 357899888776655444 45889999999988866433 34577888899998887653 5688899999999999
Q ss_pred EEEEcCCchhHHHHHh----hcCCCceEEEEEcC
Q psy6874 214 IVITTHDLLPKFRNIL----KLTPRVSTLIYMED 243 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 243 (504)
++...+..+..+.... ...+.++.+++-.+
T Consensus 238 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 238 VWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp EEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred EEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 9988776544332211 12456676666544
No 59
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=50.07 E-value=56 Score=30.92 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=48.3
Q ss_pred HHhCCC-CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 156 LRSLGQ-EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 156 L~~~Gv-~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
..+.|. ++|+.|.+....+---..+.++|...|..++.+-|...+..-...++..++++++++.+
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 345564 88888755556677777788888888998776666555556667889999999999764
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=49.93 E-value=1.1e+02 Score=31.94 Aligned_cols=106 Identities=8% Similarity=-0.091 Sum_probs=72.0
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHH--HHHHHHHhCCCeEEEecCC---CCHHHHHHhHhccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM--IAAQACFKQNIPVVTIYAT---LGEEAIAHGINETE 211 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~--~~~lA~~~~G~~~v~i~~~---l~~~~l~~~l~~~~ 211 (504)
...+|.+.+...+..... ...+++++|++..+.+-+-..- ..+++.+..|++.+..... ..++.+...+++.+
T Consensus 273 gV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~ 350 (652)
T 1pg4_A 273 GVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350 (652)
T ss_dssp EEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHT
T ss_pred eEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhC
Confidence 356788776544322111 2368889999888777654332 3457889999999887642 46889999999999
Q ss_pred ccEEEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874 212 VNIVITTHDLLPKFRNILK------LTPRVSTLIYMEDQ 244 (504)
Q Consensus 212 ~~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~ 244 (504)
++++.+.+..+..+.+... ..+.++.++..++.
T Consensus 351 vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp CSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred CeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 9999988776655443221 24567877776654
No 61
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=47.33 E-value=47 Score=31.68 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=64.5
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~v 215 (504)
...+|++.+...+..++. ..++.++|++..++|-.-.+ +..++..+..|+..+...+... ....+++.+++++
T Consensus 54 gV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~ 127 (358)
T 4gs5_A 54 PITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFV 127 (358)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEE
T ss_pred EEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEE
Confidence 367899988877666554 35889999999888765332 3344556667777777665433 2456788889988
Q ss_pred EEcCCchhHHHHHh---hcCCCceEEEEEcC
Q psy6874 216 ITTHDLLPKFRNIL---KLTPRVSTLIYMED 243 (504)
Q Consensus 216 i~~~~~~~~~~~~~---~~~~~l~~ii~~~~ 243 (504)
...+..+..+.+.. ...+.++.+++-.+
T Consensus 128 ~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 128 AMVPMQLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp EECHHHHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred EcChHHHHHhhccccccccCCcceEEEEccc
Confidence 88766554443221 22345666665443
No 62
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=45.51 E-value=40 Score=34.39 Aligned_cols=108 Identities=14% Similarity=0.020 Sum_probs=72.9
Q ss_pred ceEEeHHHHHHHHHHHHHHHH-----hCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLR-----SLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYATLGEEAIAHGINET 210 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~-----~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~ 210 (504)
...+|.+.+...+..++..+. ..++...+++..+.+..... +..++..+..|+..+........+.+...+++.
T Consensus 192 gV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~ 271 (562)
T 3ite_A 192 GVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFREL 271 (562)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHT
T ss_pred EEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHc
Confidence 357899999888888777654 24567778887777665443 334667788898887655433456677888999
Q ss_pred cccEEEEcCCchhHHHHHhhcCCCceEEEEEcCC
Q psy6874 211 EVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 211 ~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~ 244 (504)
+++++...+..+..+.......+.++.+++-.+.
T Consensus 272 ~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 272 GVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp TCCEEEECHHHHHHHTCCGGGSTTCCEEEEESSC
T ss_pred CCCEEEcCHHHHhhcccCccccCceEEEEEecCC
Confidence 9999888776554433333455677777765543
No 63
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=45.26 E-value=1.5e+02 Score=29.06 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=67.6
Q ss_pred CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc---CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCc
Q psy6874 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTP 358 (504)
Q Consensus 282 ~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~ 358 (504)
.++.+|++.........-....+|...+...+..+...+ +. ++|++..++|-.--+ ++..++++..|+..+..++
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 356778776542211111336899999877776665544 54 899999888865322 3357789999998887765
Q ss_pred ---cccccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874 359 ---LTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK 396 (504)
Q Consensus 359 ---~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 396 (504)
....+.... .++..++.+++..+.....+.+
T Consensus 115 ~~~~~~~~~l~~-------il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDS-------VLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHH-------HHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHH-------HHHhCCCCEEEeChhHHHHHHH
Confidence 211222211 3667889999888877666543
No 64
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=45.23 E-value=92 Score=31.39 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc---cCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCc
Q psy6874 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTP 358 (504)
Q Consensus 282 ~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~ 358 (504)
.++.++++.. .+| -.+|...+...+..+... .++.++|++..++|-..- -++..++++..|+..+..++
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 4567776542 222 468999887666665543 488999999999987532 23357789999999888776
Q ss_pred cccccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874 359 LTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK 396 (504)
Q Consensus 359 ~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 396 (504)
....+.... .++..++.+++..+.....+.+
T Consensus 107 ~~~~~~l~~-------~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAK-------HAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHH-------HHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHH-------HHHhcCCEEEEEChHHHHHHHH
Confidence 544443332 3667888998888877766644
No 65
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=44.11 E-value=82 Score=32.63 Aligned_cols=104 Identities=11% Similarity=0.016 Sum_probs=72.4
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHH-HHHHHHHhCCCeEEEec-CCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM-IAAQACFKQNIPVVTIY-ATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~-~~~lA~~~~G~~~v~i~-~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+. .....++.++|++..+++-+-+.- ..+++.+..|+..+..+ ....++.+...+++.++++
T Consensus 181 gV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~ 256 (620)
T 4dg8_A 181 AIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADS 256 (620)
T ss_dssp EEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCE
T ss_pred EEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcE
Confidence 35788877754332 223458899999999888765433 34678888899887764 3578899999999999999
Q ss_pred EEEcCCchhHHHHH-hhcCCCceEEEEEcCC
Q psy6874 215 VITTHDLLPKFRNI-LKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 215 vi~~~~~~~~~~~~-~~~~~~l~~ii~~~~~ 244 (504)
+...+..+..+.+. ....+.++.+++-++.
T Consensus 257 ~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 257 AWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp EEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred EEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 98877665544332 2345677777776554
No 66
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=43.38 E-value=1.5e+02 Score=29.39 Aligned_cols=100 Identities=6% Similarity=-0.070 Sum_probs=66.2
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHH-HHHH-HHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI-AAQA-CFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~-~~lA-~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+..+.. ..++.++|++..++|-.-.+-. ..+. +...|+.+++ . ...++.+...+++.++++
T Consensus 177 gV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~i~~~~~t~ 251 (509)
T 3ivr_A 177 GALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-A-KFDPAQAARDIEAHKVTV 251 (509)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S-SCCHHHHHHHHHHHTCCE
T ss_pred EEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-c-ccCHHHHHHHHHHHCCcE
Confidence 357899888777666554 4588999999988886544322 2333 4444555444 3 678999999999999999
Q ss_pred EEEcCCchhHHHHH--hhcCCCceEEEEE
Q psy6874 215 VITTHDLLPKFRNI--LKLTPRVSTLIYM 241 (504)
Q Consensus 215 vi~~~~~~~~~~~~--~~~~~~l~~ii~~ 241 (504)
+...+..+..+.+. ....+.++.++..
T Consensus 252 ~~~~p~~~~~l~~~~~~~~l~~lr~~~~~ 280 (509)
T 3ivr_A 252 MAEFAPMLGNILDQAAPAQLASLRAVTGL 280 (509)
T ss_dssp EEEETTHHHHHHHHCCGGGGTTCCEEEEE
T ss_pred EEecHHHHHHHHhcccccchhhhheeccc
Confidence 99887766554332 1233455555543
No 67
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=39.74 E-value=2e+02 Score=27.38 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC-----CCCHHHHHHhHhc
Q psy6874 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA-----TLGEEAIAHGINE 209 (504)
Q Consensus 161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~-----~l~~~~l~~~l~~ 209 (504)
+++||.|.+..|.-..+. .++...|+.+++++. .+..+++...++.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~ 172 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYR---KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDE 172 (413)
T ss_dssp CCSSCEEEEESSCCTHHH---HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcccHH---HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHH
Confidence 468999999887666554 344556887777754 4567888888875
No 68
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=38.84 E-value=84 Score=29.83 Aligned_cols=69 Identities=7% Similarity=0.002 Sum_probs=52.4
Q ss_pred HHHHHHHhCC-CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 151 AFGKGLRSLG-QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 151 ~la~~L~~~G-v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
.+.+.. +.| +++|++..+.....---....++|...|..+..+-|...+.+-...++..++++++++..
T Consensus 73 ~i~~a~-~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 73 MITDAE-EKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHH-HTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHH-HcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 343433 444 578877677777788888888999999998777766666667778899999999999753
No 69
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=36.95 E-value=1.1e+02 Score=33.72 Aligned_cols=106 Identities=4% Similarity=-0.068 Sum_probs=72.4
Q ss_pred ceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCCHHH--HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVVIFAETRAEW--MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~Vai~~~n~~e~--~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+...+........ ..++.++|++..++|-.-.+ ...++..+..|+..+..+ ...++.+...+++.+++
T Consensus 242 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 320 (979)
T 3tsy_A 242 GVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVT 320 (979)
T ss_dssp BEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCC
T ss_pred EEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCe
Confidence 467899888776554433322 34788999998888865433 344677788898887764 56789999999999999
Q ss_pred EEEEcCCchhHHHHHh----hcCCCceEEEEEcC
Q psy6874 214 IVITTHDLLPKFRNIL----KLTPRVSTLIYMED 243 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 243 (504)
++...+..+..+.... ...+.++.++.-.+
T Consensus 321 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 321 VAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp EEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSC
T ss_pred EEEcHHHHHHHHHhCccccCCCccceEEEEEcCC
Confidence 9988776554443321 12456776666544
No 70
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=36.31 E-value=1.3e+02 Score=30.15 Aligned_cols=106 Identities=6% Similarity=-0.048 Sum_probs=70.0
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH-HHHHHHHHhCCCeEEEecCC--CCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW-MIAAQACFKQNIPVVTIYAT--LGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~-~~~~lA~~~~G~~~v~i~~~--l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+...+..+.... ..++.+++++..+.+-+... +..+++++..|+..+..... ...+.+...+.+.++.
T Consensus 162 gV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 240 (521)
T 3l8c_A 162 GVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVG 240 (521)
T ss_dssp EEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCS
T ss_pred EEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCc
Confidence 46789988876655443321 25778888888777665433 34567788889988877654 3678889999999999
Q ss_pred EEEEcCCchhHHHHHh----hcCCCceEEEEEcC
Q psy6874 214 IVITTHDLLPKFRNIL----KLTPRVSTLIYMED 243 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~~----~~~~~l~~ii~~~~ 243 (504)
++...+.....+.... ...+.++.+++-.+
T Consensus 241 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~ 274 (521)
T 3l8c_A 241 IWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGE 274 (521)
T ss_dssp EEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred EEEeCCCHHHHHhhhhccccccCccceEEEEecc
Confidence 9888766544332211 22455666665544
No 71
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=36.03 E-value=1.8e+02 Score=27.09 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=51.0
Q ss_pred EeHHHHHHHHHHHH---HHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEE
Q psy6874 140 RSFNQVNDEAEAFG---KGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVI 216 (504)
Q Consensus 140 ~Ty~el~~~~~~la---~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi 216 (504)
+++.|..-...... +.+...++++|++|.|......-.+++.++....|+.++.+..+ ++. ....+..+++.++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 56666443333222 33445689999999999887777777777777778877776543 343 3566778888887
Q ss_pred EcC
Q psy6874 217 TTH 219 (504)
Q Consensus 217 ~~~ 219 (504)
...
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 644
No 72
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=35.97 E-value=1e+02 Score=31.22 Aligned_cols=105 Identities=6% Similarity=-0.102 Sum_probs=69.8
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH--HHHHHHHHhCCCeEEEecC---CCCHHHHHHhHhccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW--MIAAQACFKQNIPVVTIYA---TLGEEAIAHGINETE 211 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~--~~~~lA~~~~G~~~v~i~~---~l~~~~l~~~l~~~~ 211 (504)
...+|.+.+...+..+... ..++.++|++..++|-.-.+ ...+++.+..|+..+.+.+ ...++.+...+++.+
T Consensus 193 gV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (576)
T 3gqw_A 193 GVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNR 270 (576)
T ss_dssp CEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTT
T ss_pred eEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhC
Confidence 3678998887665544331 26889999999888876543 3446677888888877654 246778889999999
Q ss_pred ccEEEEcCCchhHHHHH-------hhcCCCceEEEEEcC
Q psy6874 212 VNIVITTHDLLPKFRNI-------LKLTPRVSTLIYMED 243 (504)
Q Consensus 212 ~~~vi~~~~~~~~~~~~-------~~~~~~l~~ii~~~~ 243 (504)
+++++..+..+..+... ....+.++.++.-.+
T Consensus 271 ~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 309 (576)
T 3gqw_A 271 GTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAE 309 (576)
T ss_dssp CCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSS
T ss_pred CeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCc
Confidence 99988876544333221 112455666665443
No 73
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=35.52 E-value=1.6e+02 Score=29.98 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=61.8
Q ss_pred CCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc---cCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCcc
Q psy6874 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPL 359 (504)
Q Consensus 283 ~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~ 359 (504)
++.+|++. . +..+|...+...+..+... .++.++|++..++|-.--+ ++..++++..|+..+..++.
T Consensus 53 p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 122 (563)
T 1amu_A 53 PNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDIE 122 (563)
T ss_dssp TTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTT
T ss_pred CCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCCC
Confidence 46677653 1 2468998887666555543 4889999999998865322 33577899999998887765
Q ss_pred ccccchhhhccCCcccccccCCcEEEeccHHHH
Q psy6874 360 TMIDTSSKIKRGTKGDASVLHPTALTAVPLILD 392 (504)
Q Consensus 360 ~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~ 392 (504)
...+.... .++..++.+++..+....
T Consensus 123 ~~~~~l~~-------il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 123 YPKERIQY-------ILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp SCHHHHHH-------HHHHHTCSEEEECGGGHH
T ss_pred CcHHHHHH-------HHHhcCCCEEEEcCchhh
Confidence 44443332 256677888777765443
No 74
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=35.48 E-value=1.1e+02 Score=30.75 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=65.4
Q ss_pred CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc---cCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCc
Q psy6874 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTP 358 (504)
Q Consensus 282 ~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~ 358 (504)
.++.+|++.. +..+|...+...+..+... .++.++|++..++|-..-+ +...++++..|+..+..++
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 3466776531 2368998887766665543 4788999999998865322 3357789999999887766
Q ss_pred cccccchhhhccCCcccccccCCcEEEeccHHHHHHH
Q psy6874 359 LTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIY 395 (504)
Q Consensus 359 ~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~ 395 (504)
....+.... .++..++..++..+.....+.
T Consensus 106 ~~~~~~l~~-------~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 106 LLTPADYVY-------MLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp TCCHHHHHH-------HHHHHTCSEEEEEGGGHHHHH
T ss_pred ccCHHHHHH-------HHhccCCeEEEechhhhhHHH
Confidence 543333222 366788999888887665543
No 75
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=32.71 E-value=1.2e+02 Score=28.10 Aligned_cols=77 Identities=18% Similarity=0.114 Sum_probs=48.5
Q ss_pred EeHHHHHHHHHHH--H-HHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEE
Q psy6874 140 RSFNQVNDEAEAF--G-KGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVI 216 (504)
Q Consensus 140 ~Ty~el~~~~~~l--a-~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi 216 (504)
+++.+..-..... | +.|...++++|++|+|....+.-=..+...+...|+.++.+. +.++ ...+++.+++.++
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i 201 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRN-HAFLKALGAEQCI 201 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHH-HHHHHHHTCSEEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccch-HHHHHHcCCCEEE
Confidence 4666654332221 1 334557899999999997556555555555567798776653 3555 4567778888777
Q ss_pred EcCC
Q psy6874 217 TTHD 220 (504)
Q Consensus 217 ~~~~ 220 (504)
...+
T Consensus 202 ~~~~ 205 (321)
T 3tqh_A 202 NYHE 205 (321)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 5443
No 76
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=32.51 E-value=79 Score=31.62 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=60.0
Q ss_pred EEecHHHHHHHHHhhhhc---cCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccc
Q psy6874 302 VVLTHDNMISTLKAFSDA---VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASV 378 (504)
Q Consensus 302 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~ 378 (504)
-.+|...+...+..+... .++.++|++..++|-..-+ ++..++++..|+..+..++....+.... .++.
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~-------il~~ 98 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDY-------FITD 98 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHH-------HHHH
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHH-------HHHh
Confidence 368999887766665544 4889999999999876322 3357789999999888776554444333 3677
Q ss_pred cCCcEEEeccHHHHHH
Q psy6874 379 LHPTALTAVPLILDRI 394 (504)
Q Consensus 379 ~~~T~~~~vP~~~~~l 394 (504)
.++.+++..+.....+
T Consensus 99 ~~~~~vi~~~~~~~~~ 114 (503)
T 4fuq_A 99 AEPKIVVCDPSKRDGI 114 (503)
T ss_dssp HCCSEEEECGGGTTTT
T ss_pred cCCcEEEECchhhHHH
Confidence 8899988887665443
No 77
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=31.77 E-value=1.7e+02 Score=29.12 Aligned_cols=85 Identities=6% Similarity=0.017 Sum_probs=61.8
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH--HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW--MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~--~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
...+|.+.+...+..+...+ ++.++|++...++-.-.+ +..+++.+..|+.++.. +...++.+...+ +.++.+
T Consensus 172 gV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i-~~~~t~ 246 (505)
T 3nyq_A 172 GAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL-GRFSTEGAAREL-NDGATM 246 (505)
T ss_dssp EEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-SSCCHHHHHHHH-TTTCCE
T ss_pred eEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-CCCChHHHHHHH-hhCCeE
Confidence 36789999888877766654 788899988877754332 33567888889988766 456777777777 668888
Q ss_pred EEEcCCchhHHH
Q psy6874 215 VITTHDLLPKFR 226 (504)
Q Consensus 215 vi~~~~~~~~~~ 226 (504)
++..+..+..+.
T Consensus 247 ~~~~P~~~~~l~ 258 (505)
T 3nyq_A 247 LFGVPTMYHRIA 258 (505)
T ss_dssp EEECHHHHHHHH
T ss_pred EEehHHHHHHHH
Confidence 888776554443
No 78
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=31.11 E-value=1.3e+02 Score=31.46 Aligned_cols=105 Identities=8% Similarity=-0.125 Sum_probs=68.4
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHH--HHHHHHHhCCCeEEEecCC---CCHHHHHHhHhcccc
Q psy6874 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM--IAAQACFKQNIPVVTIYAT---LGEEAIAHGINETEV 212 (504)
Q Consensus 138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~--~~~lA~~~~G~~~v~i~~~---l~~~~l~~~l~~~~~ 212 (504)
..+|.+.+...+..... ...+++++|++..+.+-+-..- ..+++.+..|++.+..... ..++.+...+++.++
T Consensus 280 V~~sh~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~v 357 (663)
T 1ry2_A 280 VQHSTAGYLLGALLTMR--YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKV 357 (663)
T ss_dssp EEECSHHHHHHHHHHHH--HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTC
T ss_pred EEEchhHHHHHHHHHHH--HhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCC
Confidence 45777766543322211 2368899999887776553322 3457888899998887642 467889999999999
Q ss_pred cEEEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874 213 NIVITTHDLLPKFRNILK------LTPRVSTLIYMEDQ 244 (504)
Q Consensus 213 ~~vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~ 244 (504)
+++.+.+..+..+.+... ..+.++.++...+.
T Consensus 358 t~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 395 (663)
T 1ry2_A 358 TQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP 395 (663)
T ss_dssp SEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred CEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCC
Confidence 999988765544433211 24567777665543
No 79
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=30.60 E-value=1.2e+02 Score=29.07 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=40.4
Q ss_pred HHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC-----CCCHHHHHHhHhccc--ccEEEEc
Q psy6874 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA-----TLGEEAIAHGINETE--VNIVITT 218 (504)
Q Consensus 156 L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~-----~l~~~~l~~~l~~~~--~~~vi~~ 218 (504)
+...++++||.|.+-.+..+.+ ..++...|+.++.++. .+..+++...+...+ .++|+..
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 4445788999998877665544 3456678988877653 356788888774434 6666643
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=30.20 E-value=2.4e+02 Score=23.55 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHH---HHHhHhcccccEEEEcCCchhH
Q psy6874 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEA---IAHGINETEVNIVITTHDLLPK 224 (504)
Q Consensus 148 ~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~---l~~~l~~~~~~~vi~~~~~~~~ 224 (504)
+...+...|.+.+ ++..+.|++++....-...-.+...|..+..+...++.++ +....+..+.+++|+.+-....
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 4445556665543 5778999998876665555566667888999988777654 3344455677888877532221
Q ss_pred HHHHhhcCCCceEEEEEcC
Q psy6874 225 FRNILKLTPRVSTLIYMED 243 (504)
Q Consensus 225 ~~~~~~~~~~l~~ii~~~~ 243 (504)
-..|....+|.++.
T Consensus 110 -----ldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 110 -----LDISNVKHVINFDL 123 (185)
T ss_dssp ------CCCSBSEEEESSC
T ss_pred -----CCcccCCEEEEeCC
Confidence 13567777776554
No 81
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=29.09 E-value=1.9e+02 Score=28.37 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=47.5
Q ss_pred HhCCC-CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcC
Q psy6874 157 RSLGQ-EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTH 219 (504)
Q Consensus 157 ~~~Gv-~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~ 219 (504)
.+.|+ ++|....+....+-.-....++|...|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45664 7776555566667777788888999999877666655566667788999999999975
No 82
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.92 E-value=1.7e+02 Score=27.43 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCCCCCeEEEEcCCCH------HHH-HHHHHHHhCCCeEEEecCCC------------CHHHHHHhHhcccccEEEEcCC
Q psy6874 160 GQEPRHNVVIFAETRA------EWM-IAAQACFKQNIPVVTIYATL------------GEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 160 Gv~~gd~Vai~~~n~~------e~~-~~~lA~~~~G~~~v~i~~~l------------~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
-+++||+|+|++|.+. +-+ .+.--+-..|..++.-..-. ..+++..++.+-+++.|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999753 222 22222345688877553221 2356788888888999998753
No 83
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=28.89 E-value=2e+02 Score=26.74 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=44.9
Q ss_pred HhCC-CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 157 RSLG-QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 157 ~~~G-v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
.+.| +++|+...+....+-.-..+.++|...|..++.+-|...+..-...++..++++++++.+
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3556 466754444456666777778888899997776655544555567888999999998854
No 84
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=28.44 E-value=1.8e+02 Score=29.65 Aligned_cols=104 Identities=4% Similarity=-0.171 Sum_probs=67.6
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH--HHHHHHHHhCCCeEEEec-CCCCHHHHHHhHhcccccE
Q psy6874 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW--MIAAQACFKQNIPVVTIY-ATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~--~~~~lA~~~~G~~~v~i~-~~l~~~~l~~~l~~~~~~~ 214 (504)
..+|...+...+. ......++.+++++....+..... +..+++.+..|+.++..+ ..+.++.+...+++.++++
T Consensus 243 V~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~ 319 (580)
T 3etc_A 243 VEHDNTYPLGHIL---TAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT 319 (580)
T ss_dssp EEEETTHHHHHHH---HHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCE
T ss_pred EEeccHHHHHHHH---HHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeE
Confidence 4466654433222 222235888999888777655432 224678889999988775 5678999999999999999
Q ss_pred EEEcCCchhHHHHHh---hcCCCceEEEEEcCC
Q psy6874 215 VITTHDLLPKFRNIL---KLTPRVSTLIYMEDQ 244 (504)
Q Consensus 215 vi~~~~~~~~~~~~~---~~~~~l~~ii~~~~~ 244 (504)
+...+..+..+.... ...+.++.++.-++.
T Consensus 320 ~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~ 352 (580)
T 3etc_A 320 FCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEP 352 (580)
T ss_dssp EEECHHHHHHHHTSCC---CCTTCCEEEECSSC
T ss_pred EEccHHHHHHHHhcccccCCCccceEEEEccCC
Confidence 998876655443321 123567776665543
No 85
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=28.39 E-value=2.6e+02 Score=26.33 Aligned_cols=54 Identities=7% Similarity=0.133 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCC-----CCHHHHHHhHhcccccEEEE
Q psy6874 160 GQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT-----LGEEAIAHGINETEVNIVIT 217 (504)
Q Consensus 160 Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~-----l~~~~l~~~l~~~~~~~vi~ 217 (504)
++++||.|.+..+....... ++...|+.++.++.+ ...+++...++. +.++|+.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 68899999888776655544 455678877766532 467888887764 5566665
No 86
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=28.31 E-value=2.1e+02 Score=23.29 Aligned_cols=74 Identities=11% Similarity=0.177 Sum_probs=49.1
Q ss_pred CceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC---CCCHHHHHHhHhcccc
Q psy6874 136 DYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA---TLGEEAIAHGINETEV 212 (504)
Q Consensus 136 ~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~---~l~~~~l~~~l~~~~~ 212 (504)
-|...|++++.+...+.|..+ |-.|..+-.|+.--++-++=-..-..-.+.||| +.+.-++...|...+.
T Consensus 21 iYG~~tl~di~~~l~~~a~~~-------g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~ 93 (143)
T 1gqo_A 21 VFGRQTLTDIETDLFQFAEAL-------HIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISL 93 (143)
T ss_dssp HHCSCCHHHHHHHHHHHHHHH-------TCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCS
T ss_pred cCCcCCHHHHHHHHHHHHHHc-------CCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCC
Confidence 345689999999999988866 457888888886555554433344456666766 3445566666666555
Q ss_pred cEEE
Q psy6874 213 NIVI 216 (504)
Q Consensus 213 ~~vi 216 (504)
.+|=
T Consensus 94 P~VE 97 (143)
T 1gqo_A 94 PVVE 97 (143)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5543
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.84 E-value=1.8e+02 Score=27.37 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=40.0
Q ss_pred CCCCCCeEEEEcCCCHH------HHHHHH-HHHhCCCeEEEecCCC------------CHHHHHHhHhcccccEEEEcCC
Q psy6874 160 GQEPRHNVVIFAETRAE------WMIAAQ-ACFKQNIPVVTIYATL------------GEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 160 Gv~~gd~Vai~~~n~~e------~~~~~l-A~~~~G~~~v~i~~~l------------~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
-+++||+|+|++|.++- -+-... -+-..|..++.-.... ..++|..++.+-++++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999998842 222222 2334688877642211 1256777888888999998753
No 88
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=27.71 E-value=2.5e+02 Score=22.95 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHH-HHHhCCCeEEEecC---CCCHHHHHHhHhcc
Q psy6874 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQ-ACFKQNIPVVTIYA---TLGEEAIAHGINET 210 (504)
Q Consensus 135 ~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l-A~~~~G~~~v~i~~---~l~~~~l~~~l~~~ 210 (504)
+-|...|++++.+...+.|..+ |-.|..+-.|+.--++-++ .+..-|...+.||| +.+.-++...|...
T Consensus 19 ~iYG~~tl~di~~~l~~~a~~~-------g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v 91 (149)
T 2uyg_A 19 EVYGRTTLEELEALCEAWGAEL-------GLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQ 91 (149)
T ss_dssp SSSCSCCHHHHHHHHHHHHHHT-------TCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTS
T ss_pred CcCCcCCHHHHHHHHHHHHHHc-------CCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhC
Confidence 4456689999999999888754 3467788888865444443 33333366677776 34555666666666
Q ss_pred cccEEEE
Q psy6874 211 EVNIVIT 217 (504)
Q Consensus 211 ~~~~vi~ 217 (504)
+..+|=+
T Consensus 92 ~~P~VEV 98 (149)
T 2uyg_A 92 PLPVVEV 98 (149)
T ss_dssp CSCEEEE
T ss_pred CCCEEEE
Confidence 5555433
No 89
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=27.22 E-value=1.3e+02 Score=21.38 Aligned_cols=46 Identities=7% Similarity=0.058 Sum_probs=34.6
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCe
Q psy6874 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIP 190 (504)
Q Consensus 138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~ 190 (504)
..+.+.++.+. +.+++..+++.|.++|........+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 45777776543 34456778899999999988887888888888875
No 90
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=26.65 E-value=1.2e+02 Score=34.59 Aligned_cols=104 Identities=9% Similarity=0.103 Sum_probs=70.6
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHH-HHHHHHHhCCCeEEEecC--CCCHHHHHHhHhccccc
Q psy6874 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM-IAAQACFKQNIPVVTIYA--TLGEEAIAHGINETEVN 213 (504)
Q Consensus 137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~-~~~lA~~~~G~~~v~i~~--~l~~~~l~~~l~~~~~~ 213 (504)
...+|.+.+... .......++.++|++..+.+-+-+.. .-+++.+..|+.++..+. ...++.+...+++.+++
T Consensus 624 gV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt 699 (1304)
T 2vsq_A 624 GNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVN 699 (1304)
T ss_dssp EEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCC
T ss_pred EEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCc
Confidence 357888877532 11223458889999988887765443 346788888999888765 36788999999999999
Q ss_pred EEEEcCCchhHHHHH-hhcCCCceEEEEEcCC
Q psy6874 214 IVITTHDLLPKFRNI-LKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 214 ~vi~~~~~~~~~~~~-~~~~~~l~~ii~~~~~ 244 (504)
++...+..+..+.+. ....+.++.+++-++.
T Consensus 700 ~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 700 VMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp EEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred EEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 988877665544332 1123456776665543
No 91
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=26.60 E-value=2.6e+02 Score=22.65 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHh---cccccEEEEcCCchhH
Q psy6874 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN---ETEVNIVITTHDLLPK 224 (504)
Q Consensus 148 ~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~---~~~~~~vi~~~~~~~~ 224 (504)
+...+...|.+. ++..+.||+++....-...-.+...|..+..++..++.++-...++ ..+.+++|+.+-....
T Consensus 22 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 98 (163)
T 2hjv_A 22 KFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98 (163)
T ss_dssp HHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTT
T ss_pred HHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 334444445443 3567888888776665555666677999999999998876555554 4567788877432211
Q ss_pred HHHHhhcCCCceEEEEEcC
Q psy6874 225 FRNILKLTPRVSTLIYMED 243 (504)
Q Consensus 225 ~~~~~~~~~~l~~ii~~~~ 243 (504)
-..|.+..+|.++.
T Consensus 99 -----ld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 99 -----IDIENISLVINYDL 112 (163)
T ss_dssp -----CCCSCCSEEEESSC
T ss_pred -----CchhcCCEEEEeCC
Confidence 13566777776654
No 92
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=26.58 E-value=2.7e+02 Score=22.84 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHh---cccccEEEEcCCchhH
Q psy6874 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN---ETEVNIVITTHDLLPK 224 (504)
Q Consensus 148 ~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~---~~~~~~vi~~~~~~~~ 224 (504)
+...+...+... ++..+.||+++....-...-.+...|..+..++..++.++-...++ ..+.+++|+.+-....
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 97 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcC
Confidence 455565555443 4668999998877666666666677889999999998876555554 4567888877543222
Q ss_pred HHHHhhcCCCceEEEEEcC
Q psy6874 225 FRNILKLTPRVSTLIYMED 243 (504)
Q Consensus 225 ~~~~~~~~~~l~~ii~~~~ 243 (504)
+ ..|....+|.++.
T Consensus 98 i-----d~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 98 I-----DVKQVTIVVNFDL 111 (175)
T ss_dssp T-----CCTTEEEEEESSC
T ss_pred C-----CcccCCEEEEeCC
Confidence 2 3466677776543
No 93
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.37 E-value=1.9e+02 Score=27.68 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEcCCCHH------HHHHHH-HHHhCCCeEEEecCCC------------CHHHHHHhHhcccccEEEEcC
Q psy6874 159 LGQEPRHNVVIFAETRAE------WMIAAQ-ACFKQNIPVVTIYATL------------GEEAIAHGINETEVNIVITTH 219 (504)
Q Consensus 159 ~Gv~~gd~Vai~~~n~~e------~~~~~l-A~~~~G~~~v~i~~~l------------~~~~l~~~l~~~~~~~vi~~~ 219 (504)
.-+++||+|+|++|.++- -+-... -+-..|..++.-+... ..++|..++.+-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 358999999999998742 222222 2334788887653321 235677788888899999875
Q ss_pred C
Q psy6874 220 D 220 (504)
Q Consensus 220 ~ 220 (504)
.
T Consensus 118 G 118 (371)
T 3tla_A 118 G 118 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 94
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.19 E-value=2.2e+02 Score=27.00 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=39.7
Q ss_pred hCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCC----CCHHHHHHhHhcc--cccEEEEc
Q psy6874 158 SLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT----LGEEAIAHGINET--EVNIVITT 218 (504)
Q Consensus 158 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~----l~~~~l~~~l~~~--~~~~vi~~ 218 (504)
..++++||.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++|+..
T Consensus 66 ~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 66 VAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp HTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred HcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 3457889999998887766643 334478887777643 5678888888753 46666654
No 95
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=26.18 E-value=2.5e+02 Score=25.83 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=44.1
Q ss_pred HHhCCC-CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 156 LRSLGQ-EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 156 L~~~Gv-~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
+.+.|. ++|+.|.. ...+-.-..+.++|...|..++.+-|...+..-...++..++++++++.+
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 334554 66666555 55566666677778899997776655544555566788999999999863
No 96
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=25.86 E-value=4.4e+02 Score=25.11 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC---CCCHHHHHHhHhc-----------ccccEEEE
Q psy6874 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA---TLGEEAIAHGINE-----------TEVNIVIT 217 (504)
Q Consensus 161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~---~l~~~~l~~~l~~-----------~~~~~vi~ 217 (504)
.++||.|.+..|.-..+. .++...|+.+++++. ....+++...++. .++++|++
T Consensus 129 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~ 196 (425)
T 2r2n_A 129 INPGDNVLLDEPAYSGTL---QSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYT 196 (425)
T ss_dssp CCTTCEEEEESSCCHHHH---HHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEE
T ss_pred CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEE
Confidence 357899999877665543 345667887777653 2457788888863 34677755
No 97
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=25.08 E-value=4e+02 Score=24.38 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCC----CCHHHHHHhHhc-ccccEEEEcC-C-------chhHHHH
Q psy6874 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT----LGEEAIAHGINE-TEVNIVITTH-D-------LLPKFRN 227 (504)
Q Consensus 161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~----l~~~~l~~~l~~-~~~~~vi~~~-~-------~~~~~~~ 227 (504)
.++||.|.+..+.-..+. .++...|+.++.++.+ ...+++...+++ .++++|++.. . ..+.+.+
T Consensus 89 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 165 (354)
T 3ly1_A 89 ASLEAQLVIPELTYGDGE---HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEP 165 (354)
T ss_dssp CCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHH
T ss_pred hCCCCeEEECCCCchHHH---HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 367899888877665543 4555678877776533 467888888875 5677776532 1 1234556
Q ss_pred HhhcCCCceEEEEEcCC
Q psy6874 228 ILKLTPRVSTLIYMEDQ 244 (504)
Q Consensus 228 ~~~~~~~l~~ii~~~~~ 244 (504)
+.+.+ .-...+++|+.
T Consensus 166 l~~~~-~~~~~li~De~ 181 (354)
T 3ly1_A 166 WIASK-PANTMFIVDEA 181 (354)
T ss_dssp HHHTC-CTTEEEEEECT
T ss_pred HHHhC-CCCeEEEEecc
Confidence 65554 33345555554
No 98
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=24.95 E-value=1.8e+02 Score=27.48 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch
Q psy6874 163 PRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL 222 (504)
Q Consensus 163 ~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~ 222 (504)
+.+.|.-. ..+---....++|...|..++.+-|...+..-...++..++++++++....
T Consensus 75 ~~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 75 KPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp CCSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 34444443 446666677788999999877766665666667888999999999987643
No 99
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.33 E-value=2e+02 Score=27.08 Aligned_cols=61 Identities=8% Similarity=0.017 Sum_probs=39.5
Q ss_pred CCCCCCeEEEEcCCCHH------HHHHHH-HHHhCCCeEEEecCCC------------CHHHHHHhHhcccccEEEEcCC
Q psy6874 160 GQEPRHNVVIFAETRAE------WMIAAQ-ACFKQNIPVVTIYATL------------GEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 160 Gv~~gd~Vai~~~n~~e------~~~~~l-A~~~~G~~~v~i~~~l------------~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
-+++||+|+|++|.+.- -+-... -+-..|..++.-+... ..++|...+.+-++++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999998752 222222 2334688877543221 1356777778888888888653
No 100
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=24.32 E-value=4.1e+02 Score=24.23 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=42.8
Q ss_pred HhCC-CCCCC--eEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 157 RSLG-QEPRH--NVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 157 ~~~G-v~~gd--~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
.+.| +++|+ .|.. ...+-.-..+.++|...|..++.+-|...+..-...++..++++++++.+
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 46666 4433 45555556667778899997776655444555667788899999999865
No 101
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=24.26 E-value=2.1e+02 Score=26.85 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=36.2
Q ss_pred hCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC-----CCCHHHHHHhHhcccccEEEEc
Q psy6874 158 SLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA-----TLGEEAIAHGINETEVNIVITT 218 (504)
Q Consensus 158 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~-----~l~~~~l~~~l~~~~~~~vi~~ 218 (504)
..++++||.|.+..+....+. .++...|+.++.++. ....+++...++. ++++|+..
T Consensus 73 ~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 73 ALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 345678888888776665543 345567877766653 2567777777754 56666654
No 102
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=24.01 E-value=2.4e+02 Score=26.47 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=42.9
Q ss_pred hCCC-CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 158 SLGQ-EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 158 ~~Gv-~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
+.|. ++|+.|.... .+---..+.++|...|..++.+-|...+..-...++..++++++++.+
T Consensus 71 ~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 71 KDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 4453 6776665554 355555667777889987777665545555667888899999999863
No 103
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=23.94 E-value=2.5e+02 Score=26.09 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCC----CCHHHHHHhHhcccccEEEE
Q psy6874 162 EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT----LGEEAIAHGINETEVNIVIT 217 (504)
Q Consensus 162 ~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~----l~~~~l~~~l~~~~~~~vi~ 217 (504)
++||.|.+..+.-+-+.-.+.++...|+.++.++.. ...+++...++. ++++|+.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 145 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSI 145 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEE
Confidence 456776665555544444444445556666655432 345666665543 4444444
No 104
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=22.81 E-value=2.1e+02 Score=23.27 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=44.6
Q ss_pred CCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC---CCCHHHHHHhHhccc
Q psy6874 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA---TLGEEAIAHGINETE 211 (504)
Q Consensus 135 ~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~---~l~~~~l~~~l~~~~ 211 (504)
+-|...|++++.+...+.|..+ |-.|..+-.|+.--++-++=-..-..-.+.||| +.+.-++...|...+
T Consensus 22 ~iYG~~tl~di~~~l~~~a~~~-------g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~ 94 (146)
T 1h05_A 22 AVYGGTTHDELVALIEREAAEL-------GLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELS 94 (146)
T ss_dssp ----CCCHHHHHHHHHHHHHHT-------TCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCC
T ss_pred CcCCcCCHHHHHHHHHHHHHHc-------CCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCC
Confidence 4456689999999998888754 447888888886444433322221233344544 455666677776666
Q ss_pred ccEEEE
Q psy6874 212 VNIVIT 217 (504)
Q Consensus 212 ~~~vi~ 217 (504)
..+|=+
T Consensus 95 ~P~VEV 100 (146)
T 1h05_A 95 APLIEV 100 (146)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 555543
No 105
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=22.60 E-value=2.8e+02 Score=25.43 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=42.4
Q ss_pred HhCCC-CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 157 RSLGQ-EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 157 ~~~Gv-~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
.+.|. ++|+.|.. ...+-.-..+.++|...|..++.+-|...+..-...++..++++++++.+
T Consensus 57 ~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 57 EKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34554 66665544 55555556667778889987776655444455566778899999999864
No 106
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=22.55 E-value=3.1e+02 Score=25.42 Aligned_cols=78 Identities=6% Similarity=-0.031 Sum_probs=48.2
Q ss_pred EeHHHHHHHHHHH---HHHHHhC--CCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874 140 RSFNQVNDEAEAF---GKGLRSL--GQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214 (504)
Q Consensus 140 ~Ty~el~~~~~~l---a~~L~~~--Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~ 214 (504)
+++.+.......+ -+.|.+. ++++|++|+|......-.+++.+|-..-|+.++.+..+ ++.+ ..+++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHH-HHHHHcCCCE
Confidence 4565544322221 2334453 78999999999885556666666665547777766543 4443 4567788888
Q ss_pred EEEcCC
Q psy6874 215 VITTHD 220 (504)
Q Consensus 215 vi~~~~ 220 (504)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876554
No 107
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=21.90 E-value=3.1e+02 Score=26.65 Aligned_cols=60 Identities=7% Similarity=-0.030 Sum_probs=27.1
Q ss_pred EEcCCCHHHHHH-HHHHHhCCCeEEEecCCCCHH--HHHHhHhcccccEEEEcCCchhHHHHH
Q psy6874 169 IFAETRAEWMIA-AQACFKQNIPVVTIYATLGEE--AIAHGINETEVNIVITTHDLLPKFRNI 228 (504)
Q Consensus 169 i~~~n~~e~~~~-~lA~~~~G~~~v~i~~~l~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~ 228 (504)
++..+..+.+.+ +.++..-|-.++.-++.+..- .+...++..+++++.++.+..+.+.+.
T Consensus 101 v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~a 163 (430)
T 3ri6_A 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHA 163 (430)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHh
Confidence 444444444332 334444454444444444321 122245556666666665444444433
No 108
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=21.82 E-value=2.4e+02 Score=26.43 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHh-CCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEE-EecCCCCHHHHHHhHhcccccEEEEc
Q psy6874 155 GLRS-LGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV-TIYATLGEEAIAHGINETEVNIVITT 218 (504)
Q Consensus 155 ~L~~-~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v-~i~~~l~~~~l~~~l~~~~~~~vi~~ 218 (504)
.|.+ .++++|++|.|....+.-=.++...+...|+..+ .....-..++....++..+++.++..
T Consensus 158 ~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp HHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred HHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 3444 4899999999999855544444444455688544 44443334444556677888887754
No 109
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=21.56 E-value=3.1e+02 Score=25.68 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCC-------CCHHHHHHhHhcccccEEEE
Q psy6874 162 EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT-------LGEEAIAHGINETEVNIVIT 217 (504)
Q Consensus 162 ~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~-------l~~~~l~~~l~~~~~~~vi~ 217 (504)
++||.|.+..+.-..+. .++...|+.++.++.. ...+++...++..++++|+.
T Consensus 109 ~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 109 ETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp CTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 57888888777665544 3345667766655431 56788888887556666654
No 110
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=21.44 E-value=4.8e+02 Score=23.99 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=37.2
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC----CCCHHHHHHhHhcccccEEEEc
Q psy6874 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA----TLGEEAIAHGINETEVNIVITT 218 (504)
Q Consensus 161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~----~l~~~~l~~~l~~~~~~~vi~~ 218 (504)
.++||.|.+..+.-..+.- ++...|+.++.++. ....+++...++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 5678998887776554432 35567877666543 3567888888877567777653
No 111
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=21.43 E-value=3.8e+02 Score=22.86 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhH---hcccccEEEEcCCchhH
Q psy6874 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGI---NETEVNIVITTHDLLPK 224 (504)
Q Consensus 148 ~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l---~~~~~~~vi~~~~~~~~ 224 (504)
+...+...+... ++..+.||++...+.-...-.+...|..+.+++..++.++-...+ +..+.+++|+.+-....
T Consensus 18 k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 18 RLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp HHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 344444445443 256899999877655444445556688999999999987755555 45567788877532211
Q ss_pred HHHHhhcCCCceEEEEEcC
Q psy6874 225 FRNILKLTPRVSTLIYMED 243 (504)
Q Consensus 225 ~~~~~~~~~~l~~ii~~~~ 243 (504)
-..|.+..+|.++.
T Consensus 95 -----idi~~v~~Vi~~~~ 108 (212)
T 3eaq_A 95 -----LDIPQVDLVVHYRL 108 (212)
T ss_dssp -----SSCCCBSEEEESSC
T ss_pred -----CCCccCcEEEECCC
Confidence 13466677665543
No 112
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=21.05 E-value=3.6e+02 Score=25.06 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=45.0
Q ss_pred HhCC-CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874 157 RSLG-QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220 (504)
Q Consensus 157 ~~~G-v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~ 220 (504)
.+.| +++++.|... ..+-.-..+.++|...|..++.+-|...+..-...++..++++++++.+
T Consensus 65 ~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3455 4677776554 4466666777788888998776666555556677888999999999863
No 113
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=21.02 E-value=2.5e+02 Score=26.27 Aligned_cols=55 Identities=5% Similarity=0.089 Sum_probs=35.7
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCC-------CCHHHHHHhHhcccccEEEEc
Q psy6874 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT-------LGEEAIAHGINETEVNIVITT 218 (504)
Q Consensus 161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~-------l~~~~l~~~l~~~~~~~vi~~ 218 (504)
.++||.|.+..+.-..+ ..++...|+.++.++.. ...+++...+++.++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 45778877766555443 33455678877776542 667888888876667766543
No 114
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=21.00 E-value=3.7e+02 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=35.2
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEec--C----CCCHHHHHHhHhc----ccccEEEEc
Q psy6874 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIY--A----TLGEEAIAHGINE----TEVNIVITT 218 (504)
Q Consensus 161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~--~----~l~~~~l~~~l~~----~~~~~vi~~ 218 (504)
+++||.|.+..+.-..+... +...|+.++.++ . ....+++...+++ .+++++++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 35788888876666554433 567788777776 3 2357788887764 345555544
No 115
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=20.91 E-value=3.2e+02 Score=25.23 Aligned_cols=60 Identities=22% Similarity=0.094 Sum_probs=42.2
Q ss_pred HhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEc
Q psy6874 157 RSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITT 218 (504)
Q Consensus 157 ~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~ 218 (504)
...++++|++|.|...++.--..+...+...|+.++.+.. +++.+....++.+++.++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 3458999999999998776656666666678987766543 35565555477788777653
No 116
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=20.90 E-value=5.1e+02 Score=24.32 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=38.0
Q ss_pred hCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHhHhcccccEEEEcC
Q psy6874 158 SLGQEPRHNVVIFAETRAEWMIAAQACFKQNI-PVVTIYATLGEEAIAHGINETEVNIVITTH 219 (504)
Q Consensus 158 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~-~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~ 219 (504)
..++++|++|+|... +.-=.++...+...|+ .++.+..+-. .+ ..+++.+++.++...
T Consensus 188 ~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~--~~-~~a~~lGa~~vi~~~ 246 (378)
T 3uko_A 188 TAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSK--KY-ETAKKFGVNEFVNPK 246 (378)
T ss_dssp TTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTT--HH-HHHHTTTCCEEECGG
T ss_pred hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH--HH-HHHHHcCCcEEEccc
Confidence 458999999999987 5444444444456688 6776664433 33 255678888877543
No 117
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=20.73 E-value=3e+02 Score=25.70 Aligned_cols=60 Identities=7% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHhHhcccccEEEEc
Q psy6874 155 GLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNI-PVVTIYATLGEEAIAHGINETEVNIVITT 218 (504)
Q Consensus 155 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~-~~v~i~~~l~~~~l~~~l~~~~~~~vi~~ 218 (504)
.+...++++|++|+|... +.-=..+...+...|+ .++.++.+ ++. ...+++.+++.++..
T Consensus 158 al~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSR--KHC-CDIALEYGATDIINY 218 (352)
T ss_dssp HHHHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCC--HHH-HHHHHHHTCCEEECG
T ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCC--HHH-HHHHHHhCCceEEcC
Confidence 355678999999999986 5444444444556788 56666543 333 345677788877754
No 118
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=20.56 E-value=5.4e+02 Score=24.24 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecC-----CCCHHHHHHhHhc
Q psy6874 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA-----TLGEEAIAHGINE 209 (504)
Q Consensus 161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~-----~l~~~~l~~~l~~ 209 (504)
+++||.|.+..|.-..+.- ++...|+.+++++. .+..+++...+++
T Consensus 123 ~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 173 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNE 173 (418)
T ss_dssp SCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 4689999998877665543 45678888877753 4567888888875
No 119
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=20.48 E-value=2e+02 Score=23.67 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=45.0
Q ss_pred CCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCC---CCHHHHHHhHhccc
Q psy6874 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT---LGEEAIAHGINETE 211 (504)
Q Consensus 135 ~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~---l~~~~l~~~l~~~~ 211 (504)
+-|...|++++.+...+.|..+ |-.|..+-.|+.--++-++=-..-....+.|||. .+.-++...|...+
T Consensus 21 ~iYG~~Tl~di~~~l~~~a~~~-------g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~ 93 (154)
T 1uqr_A 21 HIYGSQTLSDIEQHLQQSAQAQ-------GYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVS 93 (154)
T ss_dssp GGTTCCCHHHHHHHHHHHHHHT-------TCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHHHHHHC-------CCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCC
Confidence 3455689999999998888754 4478888888865555544333444556666663 22334444444444
Q ss_pred ccEE
Q psy6874 212 VNIV 215 (504)
Q Consensus 212 ~~~v 215 (504)
..+|
T Consensus 94 ~P~V 97 (154)
T 1uqr_A 94 IPFI 97 (154)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 4333
No 120
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=20.09 E-value=3.5e+02 Score=21.82 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhH---hcccccEEEEcCCchhHH
Q psy6874 149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGI---NETEVNIVITTHDLLPKF 225 (504)
Q Consensus 149 ~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l---~~~~~~~vi~~~~~~~~~ 225 (504)
...+...+.+. ++..+.|++++....-...-.+...|..+..++..++.++-...+ +..+.+++++.+-....
T Consensus 18 ~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G- 93 (165)
T 1fuk_A 18 YECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG- 93 (165)
T ss_dssp HHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT-
T ss_pred HHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC-
Confidence 34444555543 356788888877665555556666788899999999877655555 45567888876432211
Q ss_pred HHHhhcCCCceEEEEEcC
Q psy6874 226 RNILKLTPRVSTLIYMED 243 (504)
Q Consensus 226 ~~~~~~~~~l~~ii~~~~ 243 (504)
-..|....+|.++.
T Consensus 94 ----~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 94 ----IDVQQVSLVINYDL 107 (165)
T ss_dssp ----CCCCSCSEEEESSC
T ss_pred ----CCcccCCEEEEeCC
Confidence 13566777776654
No 121
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=20.05 E-value=5.1e+02 Score=23.77 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=40.0
Q ss_pred CCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEc
Q psy6874 159 LGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITT 218 (504)
Q Consensus 159 ~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~ 218 (504)
.++++|++|.|....+.-=..+...+...|+.++.+.. +++.+. .+++.+++.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 38999999999996666555555555678988776654 345544 5566788877754
No 122
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.04 E-value=3.2e+02 Score=25.48 Aligned_cols=59 Identities=8% Similarity=-0.090 Sum_probs=38.3
Q ss_pred HHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEE
Q psy6874 154 KGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVI 216 (504)
Q Consensus 154 ~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi 216 (504)
+.|...++++|++|.|... +.--..+...+...|+.++.+..+-...+ .+++.+++.++
T Consensus 167 ~~l~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~---~~~~lGa~~v~ 225 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQ---DALSMGVKHFY 225 (348)
T ss_dssp HHHHHTTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHH---HHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHH---HHHhcCCCeec
Confidence 3455668999999999987 54444444444567887776654433222 44567888777
Done!