RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6874
(504 letters)
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 414 bits (1066), Expect = e-140
Identities = 155/366 (42%), Positives = 209/366 (57%), Gaps = 52/366 (14%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
G YEW S+ +V + A G GLR+LG +P + IFAE R EW+I QACF Q++ +V +
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254
Y TLGEEAI + +NETE++IV
Sbjct: 61 YDTLGEEAIEYILNETEISIVFC------------------------------------- 83
Query: 255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK 314
+++ F+++ + G ++ + +PP P+D A IMYTSG+TG PKGV+LTH N+++ +
Sbjct: 84 DAVKVYSFEELEELGKKN--KVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141
Query: 315 AFSDAV--HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
+ V I P DV++ YLPLAH+FE + E+VCL G IGY + T RG
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGL 192
Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRG--FRC 430
KGD L PT VP +LDRIYKG+ KV+ KR LF FA+ YK +RG +
Sbjct: 193 KGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYAS 252
Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV 490
PL DK+VF + K LGGRVRL+LSGGAPLSPDT E ++V L V+QGYGLTET + T+
Sbjct: 253 PLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTL 312
Query: 491 MHLNDM 496
D
Sbjct: 313 SDPGDT 318
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 418 bits (1076), Expect = e-139
Identities = 189/420 (45%), Positives = 256/420 (60%), Gaps = 14/420 (3%)
Query: 87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVN 146
+G T+ + ++SD+R LGTR++++ E E +GR F+K +G+YEW ++ QV
Sbjct: 54 WEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVF 113
Query: 147 DEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHG 206
+ F GL +LG V IFA+TRAEW+IA Q CF+QNI VVTIYA+LGEEA+ H
Sbjct: 114 ERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHS 173
Query: 207 INETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG-IEIVPFKQI 265
+NETEV VI L K +I V +IYM+D+ +D++ + F ++
Sbjct: 174 LNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEV 233
Query: 266 VKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEP 324
K G E+ + P+P D A+IMYTSGSTG PKGV++TH N+++T+ V +
Sbjct: 234 EKLGKENPV--DPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK 291
Query: 325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTAL 384
NDV+L YLPLAH+ EL +ESV G AIGY +PLT+ DTS+KIK+GTKGDAS L PT +
Sbjct: 292 NDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLM 351
Query: 385 TAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA--------KRGFRCPLIDKV 436
TAVP ILDR+ GV +KV + LF A YKR+ A G L D +
Sbjct: 352 TAVPAILDRVRDGVRKKVDAKGGLAKKLFDIA--YKRRLAAIEGSWFGAWGLEKLLWDAL 409
Query: 437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
VF + + +LGGR+R +LSGGAPLS DT I +CL + QGYGLTET + AT +D
Sbjct: 410 VFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT 469
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 296 bits (761), Expect = 8e-93
Identities = 141/448 (31%), Positives = 218/448 (48%), Gaps = 28/448 (6%)
Query: 65 KDNKSVTIRSISGPQENHIRLIRDGVD--TMEKVLRYVVTRFSDQRCLGTRQILAEEDE- 121
+N S R E H RL + + L + D+R L R + E E
Sbjct: 41 TENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEV 100
Query: 122 -KQPNG--RIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM 178
K +G R + + + ++ ++ + FG+GL LG NV I+ ETR EW+
Sbjct: 101 VKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWL 160
Query: 179 IAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVI----TTHDLLPKFRNILKLTPR 234
+ + Q++ T+YA LGE+A+A+ + ETE ++ +LL ++ P
Sbjct: 161 ASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGG--MPN 218
Query: 235 VSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKD-TAIIMYTS 293
T+IY++ S DT G +V + +V +G +GS + + P D A+IMYTS
Sbjct: 219 T-TIIYLDSLPASVDTE----GCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTS 273
Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAV-----HIEPNDVFLGYLPLAHVFELLSESVCLL 348
G+TG PKGV+ TH ++ + + A D + E ++ + YLPLAH+ E ++ L
Sbjct: 274 GTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLA 333
Query: 349 CGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF 408
G IG+ +P T+ DT ++ GD + P L VP I D I K V K+
Sbjct: 334 RGALIGFGSPRTLTDTFAR----PHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSL 389
Query: 409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIK 468
KR +F A++ + + K G P ++ VF + +LGGRVR +LSGG PLS T E +
Sbjct: 390 KRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVN 449
Query: 469 VCLCEKVIQGYGLTETTSCATVMHLNDM 496
V VIQG+GLTET C + D+
Sbjct: 450 VVF-GMVIQGWGLTETVCCGGIQRTGDL 476
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 286 bits (735), Expect = 6e-90
Identities = 124/400 (31%), Positives = 194/400 (48%), Gaps = 22/400 (5%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
+ LAE + +P+G +G +E ++ ++ + A GL SLG V IFA
Sbjct: 20 KRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAAN 79
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT-THDLLPKFRNILKLT 232
R EW IA A V IY+T E +A+ +NE+E ++ +LL +L+
Sbjct: 80 RPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDC 139
Query: 233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYE-GSPPTPKDTAIIMY 291
P+V LI + D + +E+ P + I +S +PP P D A I+Y
Sbjct: 140 PKVVDLIVIIDLVREAVEAK-ALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIY 198
Query: 292 TSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSESVCLLCG 350
TSG+TGTPKGV+LTH N+++ + + + I P D L +LPLAH+FE E L
Sbjct: 199 TSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLAL-- 256
Query: 351 VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410
Y + R D + PT + VP + +++YKG+ EKV++A +R
Sbjct: 257 ----YGGVTVLFKEDP---RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRR 309
Query: 411 ALFAFAFEYKRKWAKRGFRC-------PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
LF +A + K R + D++VF + + LGGR+R LSGGAPLSP+
Sbjct: 310 KLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPEL 369
Query: 464 HELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG 503
+ +++GYGLTET++ +V + + + G
Sbjct: 370 LHFFRSLGI-PILEGYGLTETSAVVSVNPPDRF-VLGTVG 407
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 278 bits (714), Expect = 2e-86
Identities = 134/414 (32%), Positives = 209/414 (50%), Gaps = 36/414 (8%)
Query: 88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVND 147
+ T+ Y V F D + LGTR + +G + G+Y+W ++ +
Sbjct: 41 PEIGTLHDNFVYAVETFRDYKYLGTR--------IRVDGTV------GEYKWMTYGEAGT 86
Query: 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGI 207
A G GL G V ++ R EW+I AC + V +Y TLG +A+ +
Sbjct: 87 ARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIV 146
Query: 208 NETEVNIVITTHDLLPKFRNILKLTPRVSTLIY---MEDQLTSTDTTNFKQGIEIVPFKQ 264
N EV + L + L P V ++ ++ L S + G+EIV + +
Sbjct: 147 NHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGT---GVEIVTYSK 203
Query: 265 IVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP 324
++ +G S + PP P+D A I YTSG+TGTPKGVVLTH N+I+ + S + P
Sbjct: 204 LLAQGRSSPQPF--RPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYP 261
Query: 325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGY--STPLTMIDTSSKIKRGTKGDASVLHPT 382
+DV + YLPLAH++E +++ V L GVA+G+ L ++D D + L PT
Sbjct: 262 SDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMD-----------DLAALRPT 310
Query: 383 ALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR-CPLIDKVVFGQT 441
+VP + +RIY G+ V + K LF A+ K++ + G P+ D++VF +
Sbjct: 311 IFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKI 370
Query: 442 KKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
K LGGRVR + SG +PLSPD E +++C +V++GYG+TET+ + M D
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGD 424
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 228 bits (582), Expect = 3e-67
Identities = 129/437 (29%), Positives = 216/437 (49%), Gaps = 61/437 (13%)
Query: 90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEA 149
+ T + V ++ D + LG R+I+ D K +G Y W+++ +V +E
Sbjct: 41 ITTAWDIFSKSVEKYPDNKMLGWRRIV---DGK-----------VGPYMWKTYKEVYEEV 86
Query: 150 EAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINE 209
G LR+ G EP V I+ +W++A +AC ++ V +Y TLG A+ + ++
Sbjct: 87 LQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDH 146
Query: 210 TEVNIVITTHDLLPKFRNIL----KLTPRVSTLIYMEDQLTSTDTTNFKQ-GIEIVPFKQ 264
E++ V K + +L K R+ ++ +T ++ Q G++ +
Sbjct: 147 AEIDFVFVQDK---KIKELLEPDCKSAKRLKAIVSFTS-VTEEESDKASQIGVKTYSWID 202
Query: 265 IVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA-------FS 317
+ G E+ S E +PP P D IMYTSG++G PKGVVLTH+ + + ++ F
Sbjct: 203 FLHMGKENPS--ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFE 260
Query: 318 DAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDAS 377
D + + DV+L +LPLAH+ + + E G ++GY GD +
Sbjct: 261 DKMTHD--DVYLSFLPLAHILDRMIEEYFFRKGASVGY----------------YHGDLN 302
Query: 378 VLH-------PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR- 429
L PT L VP + +RI++G+ + + +P +R +F ++YK W RG+
Sbjct: 303 ALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSH 362
Query: 430 ---CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS 486
P+ D + F + K LGGR+RL++SGGAPLS + E ++V C V+QGYGLTET
Sbjct: 363 KKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLG 422
Query: 487 CATVMHLNDMGNINSNG 503
T+ ++M + + G
Sbjct: 423 PTTLGFPDEMCMLGTVG 439
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 220 bits (563), Expect = 1e-64
Identities = 132/394 (33%), Positives = 192/394 (48%), Gaps = 37/394 (9%)
Query: 114 QILAEEDEKQPNGRIFKKYVM-----GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV 168
Q ++ +K PN ++ + + G Y W ++ +V D A G +RS G P
Sbjct: 47 QFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCG 106
Query: 169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNI 228
I+ EW+IA +AC Q I V +Y TLG A+ IN EV+I K +I
Sbjct: 107 IYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQES---KISSI 163
Query: 229 LKLTPRVS----TLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPK 284
L P+ S T++ D + + G+ +++ GS E P
Sbjct: 164 LSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD---CELPPKQKT 220
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMIST------LKAFSDAVHIEPNDVFLGYLPLAHVF 338
D IMYTSG+TG PKGV+LT+ +I+ L +D V E D + YLPLAHV+
Sbjct: 221 DICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATE-EDSYFSYLPLAHVY 279
Query: 339 ELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV 398
+ + E+ C+ G +IG+ I R D L PT VP + DRIY G+
Sbjct: 280 DQVIETYCISKGASIGF--------WQGDI-RYLMEDVQALKPTIFCGVPRVYDRIYTGI 330
Query: 399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFR----CPLIDKVVFGQTKKLLGGRVRLILS 454
+K+S ++ LF FA+ YK ++G + P +D++VF + K+ LGGRVRL+LS
Sbjct: 331 MQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLS 390
Query: 455 GGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA 488
G APL E ++V C + QGYGLTE SC
Sbjct: 391 GAAPLPRHVEEFLRVTSCSVLSQGYGLTE--SCG 422
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 207 bits (529), Expect = 1e-59
Identities = 133/413 (32%), Positives = 209/413 (50%), Gaps = 41/413 (9%)
Query: 88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVND 147
+G+D+ V R V ++ + LG R+I+ +G+ G Y W+++ +V D
Sbjct: 42 EGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQTYQEVYD 87
Query: 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGI 207
G LRS+G + I+ EW+I+ +AC + V +Y TLG A+ I
Sbjct: 88 IVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFII 147
Query: 208 NETEVNIVITTHDLLPK-FRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIV 266
+ +EV+IV + + F+ T + T++ G+ I + + +
Sbjct: 148 SHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFL 207
Query: 267 KRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST-------LKAFSDA 319
K G G +Y+ D IMYTSG+TG PKGV+++++++++ LK+ + A
Sbjct: 208 KLGE--GKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAA 265
Query: 320 VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVL 379
+ ++ DV+L YLPLAH+F+ + E + G AIG+ D I+ D L
Sbjct: 266 LTVK--DVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG----DVKLLIE-----DLGEL 314
Query: 380 HPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR----CPLIDK 435
PT AVP +LDR+Y G+ +K+S K+ +F AF YK K+G PL DK
Sbjct: 315 KPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDK 374
Query: 436 VVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA 488
+VF + K+ LGG VR+ILSG APL+ ++V C V+QGYGLTE SCA
Sbjct: 375 LVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE--SCA 425
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 199 bits (509), Expect = 2e-58
Identities = 100/368 (27%), Positives = 152/368 (41%), Gaps = 113/368 (30%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIP--VV 192
G ++ ++ ++ + GL +LG +P V I AE R EW+IA A V
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAI--LAAGAVPV 58
Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
IY T E +A+ +N++ +V P ++TLIY TS
Sbjct: 59 PIYPTSSPEEVAYILNDSGARVVFVEDK--PD---------DLATLIY-----TS----- 97
Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
G+TG PKGV+LTH N+++
Sbjct: 98 -----------------------------------------GTTGNPKGVMLTHRNLLAQ 116
Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFEL-LSESVCLLCGVAIGYSTPL-TMIDTSSKIKR 370
A + + + P D L +LPLAHVFE L E + L G + ++ T+++ +++
Sbjct: 117 AAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPETLLEDLREVR- 175
Query: 371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRC 430
PT AVP + ++IY G+ KV+ A P KR LF +A
Sbjct: 176 ----------PTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWA-------------- 211
Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHEL---IKVCLCEKVIQGYGLTETTSC 487
L GGR+R +SGGAPL P+ E + + +++GYGLTET+
Sbjct: 212 -------------LGGGRLRFAVSGGAPLPPEVLEFFRALGI----PILEGYGLTETSGV 254
Query: 488 ATVMHLND 495
ATV D
Sbjct: 255 ATVNRPGD 262
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 191 bits (488), Expect = 8e-56
Identities = 86/356 (24%), Positives = 135/356 (37%), Gaps = 61/356 (17%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ ++++ A LR+LG P V I EW++A A K V + +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
E +A+ + ++E ++IT +LLPK +L + LI + D D + +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELL---- 116
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
+ + + P P D A I+YTSG+TG PKGV+LTH N+++ ++
Sbjct: 117 ---------AGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF 167
Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLH 380
+ P D L LPL + LL G + ++ +
Sbjct: 168 GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLV------LVPKFTLDPARLLDLIEKYK 221
Query: 381 PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQ 440
T L VP +L + K EK S
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEKKYDLS---------------------------------- 247
Query: 441 TKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
+RL+LSGG PL P+ L + ++ GYG TETT AT D
Sbjct: 248 -------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 152 bits (386), Expect = 1e-40
Identities = 95/371 (25%), Positives = 159/371 (42%), Gaps = 65/371 (17%)
Query: 136 DYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIY 195
+Y W QV D+A L+SLG EP + I ++ AEW+IA A + V +Y
Sbjct: 6 EYTWA---QVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLY 62
Query: 196 ATLGEEAIAHGINETEVNIVIT----THDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
TL E I + + ++ + D + + + T+I ST
Sbjct: 63 PTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAG-----VPEGLPTIILF---PYSTLKD 114
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSP-PTPKDTAIIMYTSGSTGTPKGVVLTHDNMI 310
++K + ++ +G P P P+D A I+YTSG+TG PKGV+L+
Sbjct: 115 HYK-------WDDLLAA----TEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFA 163
Query: 311 STLKAFSDAVHIEPNDVFLGYLPLAHVFE-LLSESVCLLCGVAIGYSTPLTMIDT-SSKI 368
+ + + + PND L YLPLAH+ E ++ E L G + + L DT ++ +
Sbjct: 164 FAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESL---DTFAADL 220
Query: 369 KRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF 428
+R PT +VP + + +G+ K+ L
Sbjct: 221 QR--------ARPTVFFSVPRLWTKFQQGILAKLPPE-----KLNLL------------L 255
Query: 429 RCPLIDKVVFGQTKKLLG-GRVRLILSGGAPLSPDT---HELIKVCLCEKVIQGYGLTET 484
+ P++ +V + K LG + RL SG AP+ P + + + +CE GYG+TE
Sbjct: 256 KIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICE----GYGMTEN 311
Query: 485 TSCATVMHLND 495
+ +T+ + D
Sbjct: 312 FAYSTLNYPGD 322
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 149 bits (379), Expect = 2e-39
Identities = 84/372 (22%), Positives = 142/372 (38%), Gaps = 61/372 (16%)
Query: 127 RIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFK 186
R ++ ++ +++ A L++LG +P V I E++IA A +
Sbjct: 27 RPALIFLGRGGRL-TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALR 85
Query: 187 QNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246
V + L +A+ +N+ ++IT+ + + + P V ++ + D
Sbjct: 86 AGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADD 145
Query: 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
T + + G + P P D A ++YTSG+TG PKGVVLTH
Sbjct: 146 RLPIT----------LEALAAEGPGP--DADARPVDPDDLAFLLYTSGTTGLPKGVVLTH 193
Query: 307 DNMISTLKAFSDAV--HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDT 364
N+++ + A+ + P+DV L +LPL H+F L V LL + G L ++
Sbjct: 194 RNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGL---IVGLLAPLLGG--GTLVLLSP 248
Query: 365 SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA 424
T L+ VP L + +
Sbjct: 249 EPFDPEEVLWLIEKYKVTVLSGVPTFLREL-------LDNPEKDDDD------------- 288
Query: 425 KRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHE-LIKVCLCEKVIQGYGLTE 483
L +RL+LSGGAPL P+ E + +++GYGLTE
Sbjct: 289 --------------------LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTE 328
Query: 484 TTSCATVMHLND 495
T+ T+ +D
Sbjct: 329 TSPVVTINPPDD 340
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 130 bits (328), Expect = 2e-32
Identities = 100/394 (25%), Positives = 165/394 (41%), Gaps = 50/394 (12%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAA-QACFKQNIPVVT 193
+ ++ Q + K LG E H+V I EW IAA A F I V
Sbjct: 4 DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGI-AVG 62
Query: 194 IYATLGEEAIAHGINETEVNI-VITTHDLLPKFRNILKLTPRVSTLIYM-------EDQL 245
IY T EA + +E NI V+ L K I P + +I E L
Sbjct: 63 IYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNL 122
Query: 246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLT 305
S F + +P +Q+ P ++YTSG+TG PKGV+L+
Sbjct: 123 YSWK--EFMELGRSIPDEQLDAIIESQ---------KPNQCCTLIYTSGTTGMPKGVMLS 171
Query: 306 HDNMISTLKAFSDAVHIEP--NDVFLGYLPLAHV-FELLSESVCLLCGVAIGYSTP---- 358
HDN+ T KA + + + + YLPL+H+ ++L + + G + ++ P
Sbjct: 172 HDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALK 231
Query: 359 LTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFA-- 416
T++ T +++ PTA VP + ++I + + ++++ KR + ++A
Sbjct: 232 GTLVKTLREVR-----------PTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKG 280
Query: 417 --FEYKRKW---AKRGFRCP-LIDKVVFGQTKKLLG-GRVRLILSGGAPLSPDTHELIKV 469
E K C L K+VF + +K LG R + +G AP+S +T E +
Sbjct: 281 VGLETNLKLMGGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-L 339
Query: 470 CLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG 503
L +++ YG++ET+ TV + S G
Sbjct: 340 SLNIPIMELYGMSETSGPHTV-SNPQNYRLLSCG 372
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 116 bits (292), Expect = 6e-28
Identities = 78/362 (21%), Positives = 130/362 (35%), Gaps = 76/362 (20%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
+F + +A KGLR LG + V + + E+ C V +
Sbjct: 12 TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ +AH + ++ ++ D L K + K V +I ++ ++
Sbjct: 72 DELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDS-----------APDGVL 120
Query: 261 PFKQIVKRGSESGSRYEGSPPT----PKDTAIIMYTSGSTGTPKGVVLTHDNMISTL--- 313
+ +++ G+ E P DTA ++Y+SG+TG PKGV+L+H N+I+ L
Sbjct: 121 RIEDLLE--PRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQV 178
Query: 314 KAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST---PLTMIDTSSKIKR 370
+ NDV L +LP H + L + LLCG + T + K K
Sbjct: 179 QDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYK- 237
Query: 371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRC 430
T+L VP I + +
Sbjct: 238 ----------VTSLFLVPPIAVAL---------------------------------AKS 254
Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK-VIQGYGLTETTSCAT 489
PL+DK + + G APLS + E ++ + QGYG+TET T
Sbjct: 255 PLVDKYDLSSLRVIFSG--------AAPLSKELQEELRKRFPNTTIKQGYGMTETGPATT 306
Query: 490 VM 491
+
Sbjct: 307 LT 308
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 113 bits (285), Expect = 5e-27
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 15/201 (7%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQN---IPVVTIYAT 197
++ ++N L +LG V I+A W+IAA K +P+ T Y
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT- 90
Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
+EA A+ + + + L + P + ++ E +
Sbjct: 91 -ADEA-AYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICET------EEDDPHTE 142
Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
++ F + G P D A I++TSG+TG PKG +LTH ++S ++
Sbjct: 143 KMKTFTDFLAAGDP---AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWA 199
Query: 318 DAVHIEPNDVFLGYLPLAHVF 338
+ + + D +L P HVF
Sbjct: 200 EYLGLTEGDRYLAANPFFHVF 220
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 112 bits (282), Expect = 1e-26
Identities = 75/320 (23%), Positives = 119/320 (37%), Gaps = 74/320 (23%)
Query: 179 IAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRN-ILKLTPRVST 237
+A K +PV+ + T GEE + + + VIT+ L K + L +
Sbjct: 49 LALLLAGK--VPVMLNF-TAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVR 105
Query: 238 LIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTG 297
++Y+ED + ++ ++ + P D A+I++TSGS G
Sbjct: 106 IVYLEDLR---AKISKADKLKAFLAAKLPPALLRLFL----AGAKPDDPAVILFTSGSEG 158
Query: 298 TPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST 357
PKGVVL+H N+++ + + + + DV LG LPL H F L +V LL
Sbjct: 159 LPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGL---TVTLL--------L 207
Query: 358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFA--- 414
PL G V +P L K + E + L
Sbjct: 208 PLLT------------GLRVVYYPNPLD---------AKKIAELIRDYKA--TILCGTPT 244
Query: 415 FAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK 474
F Y R F +RL+++G L T EL + EK
Sbjct: 245 FLRGYARNAHPEDFS------------------SLRLVVAGAEKLPEATRELFE----EK 282
Query: 475 ----VIQGYGLTETTSCATV 490
+++GYG TE + +V
Sbjct: 283 FGIRILEGYGATECSPVISV 302
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 109 bits (276), Expect = 7e-26
Identities = 72/369 (19%), Positives = 128/369 (34%), Gaps = 116/369 (31%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ ++++ ++ F L+ LG + V + ++ IA K VV +
Sbjct: 26 TYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTP 85
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ H +N++ ++I
Sbjct: 86 RELEHQLNDSGAKVLIVAI----------------------------------------- 104
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
F+ + G+ +P D A++ YT G+TG PKG +LTH N+++ ++ + V
Sbjct: 105 SFEDALASGAPLP---LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWV 161
Query: 321 H--IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYS-------TPLTMIDTSSKIKRG 371
E D FL LPL H+F L +V +L G+ +G + P+ ++ + +
Sbjct: 162 KDLREGEDRFLTALPLFHIFGL---TVNMLLGLRLGATNVLVPNFRPINVLKEIKRYR-- 216
Query: 372 TKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCP 431
T VP +Y + FK+ F
Sbjct: 217 ---------FTIFPGVPT----LYNA----LLNHPEFKKYDF------------------ 241
Query: 432 LIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT----HELIKVCLCEKVIQGYGLTETTSC 487
+RL +SGGAPL + E +++GYGLTET+
Sbjct: 242 ---------------SSLRLCISGGAPLPVEVAERFEEKTGA----PLVEGYGLTETSPV 282
Query: 488 ATVMHLNDM 496
TV L+
Sbjct: 283 TTVNPLDGE 291
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 103 bits (258), Expect = 3e-24
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 57/210 (27%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A I+YTSG+TG PKGVVL+H N+++ +A + A+ + DV L LPL HV S
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 345 -VCLLCGVAI----GYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVH 399
LL G + G+ PL+ ++ + + T L VP
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYR-----------VTVLFGVP----------- 98
Query: 400 EKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
AL A + + +RL++SGG PL
Sbjct: 99 -------TLYDALAKAAEDRGYDLS-----------------------SLRLLISGGEPL 128
Query: 460 SPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
SP+ E + +++GYGLTET+ +
Sbjct: 129 SPELLERFEERPGAPILEGYGLTETSVVTS 158
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 101 bits (253), Expect = 8e-23
Identities = 81/396 (20%), Positives = 140/396 (35%), Gaps = 90/396 (22%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
+IL K P+ ++ ++++ LR+LG + V +F
Sbjct: 10 RILRHGARKHPDKEA---VYFDGRRT-TYAELDERVNRLANALRALGVKKGDRVAVFDWN 65
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
E++ A A K + I L E IA+ +N+ E +V+ + +P IL P
Sbjct: 66 SHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP 125
Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
V T+I D E+ +++++ S++ ++ D A ++YTS
Sbjct: 126 TVRTVIVEGD------GPAAPLAPEVGEYEELLAAASDT---FDFPDIDENDAAAMLYTS 176
Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVC---LLCG 350
G+TG PKGVVL+H N+ A + + +DV+L +P+ HV + L+ G
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW---GLPYLALMAG 233
Query: 351 VAIGY------STPLTMIDTSSKIKRGTKGDASVLH--PTALTAV---PLILDRIYKGVH 399
L +I+T +R T PT + P + +
Sbjct: 234 AKQVIPRRFDPENLLDLIET----ERVT-----FFFAVPTIWQMLLKAPRAYFVDFSSLR 284
Query: 400 EKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
+ + AL E+K K F L+
Sbjct: 285 LVIYGGAALPPALLR---EFKEK-----FGIDLV-------------------------- 310
Query: 460 SPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
QGYG+TET+ +V+ D
Sbjct: 311 -----------------QGYGMTETSPVVSVLPPED 329
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 93.8 bits (234), Expect = 2e-20
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 41/238 (17%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ +++ A A L++LG P V++ A +++ A C V
Sbjct: 25 TYAELDRRARAIAARLQALGA-PGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83
Query: 201 ----EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
+A + + V+TT +L R L + L+ D L +
Sbjct: 84 GRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAA--------- 134
Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
+ + + PP P D A + YTSGSTG PKGV++TH N+++ L+A
Sbjct: 135 --------------LAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180
Query: 317 SDAVHIEPNDVFLGYLPLAH----VFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKR 370
+ A ++P+DV + +LPL H + LL L G P+ ++ + ++R
Sbjct: 181 ARAFGLDPDDVGVSWLPLYHDMGLIGGLLQ---PLYAGF------PVVLMSPLAFLRR 229
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 92.7 bits (230), Expect = 7e-20
Identities = 67/377 (17%), Positives = 121/377 (32%), Gaps = 87/377 (23%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
+ E+ P+ ++ + ++ +++ A + L SLG P V I A+
Sbjct: 231 LLFEEQAATTPDAV----ALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADR 286
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
E ++A A K V + E +A+ + ++ +++T L
Sbjct: 287 SLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV------- 339
Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
G+ + + ++ + A I+YTS
Sbjct: 340 ----------------------GLPGLALDDALSEIPDTDPIPQALLGD--ALAYIIYTS 375
Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL---AHVFELLSESVCLLCG 350
GSTG PKGV + H + + L ++ +D L L A VFE+ LL G
Sbjct: 376 GSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIF---GALLEG 432
Query: 351 VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410
+ + L +D ++ ++ +VL L L+L
Sbjct: 433 ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA------------------ 474
Query: 411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC 470
AL R+R +LSGG L + +
Sbjct: 475 ALAPDLISPC--------------------------ERLRQLLSGGEALPLALVQRLLQL 508
Query: 471 LCE--KVIQGYGLTETT 485
+++ YG TE T
Sbjct: 509 AALARRLLNLYGPTEAT 525
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 92.1 bits (229), Expect = 1e-19
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 22/254 (8%)
Query: 256 GIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA 315
GI I+ F + K + + Y+ P I+YTSG++G PKGV+L++ N+ +T+
Sbjct: 279 GISIILFDDMTKNKT---TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP 335
Query: 316 FSDAVHIE--PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSK-IKRGT 372
+ L YLP++H++E + + + G I + SK I +
Sbjct: 336 LCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTI---------NIWSKDINYFS 386
Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPL 432
K D L VP + +RIY + +++ P KR L ++ GF
Sbjct: 387 K-DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGF-SKF 444
Query: 433 IDKVVFGQTKKL---LGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
++ + + K+ + + +IL+GG LSP E + V L QGYGLTETT
Sbjct: 445 LEGI-THISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503
Query: 490 VMHLNDMGNINSNG 503
V H +D N S G
Sbjct: 504 VQHADDN-NTESIG 516
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 91.6 bits (228), Expect = 1e-19
Identities = 63/363 (17%), Positives = 114/363 (31%), Gaps = 79/363 (21%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
E ++ + E L+ LG V I+ E +IA A + +
Sbjct: 37 LFREL-TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254
L EA+A I + ++I + I L
Sbjct: 96 SPGLSAEAVADRIADLGPKVLIADDGTFRNGKEI-ALLEDA------------------- 135
Query: 255 QGIEIVPFKQIVKRG--------SESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
++ +V R ++ ++E P D ++YTSG+TG PKG+V +H
Sbjct: 136 --DAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSH 193
Query: 307 DNMISTLKAFSDAVH-IEPNDVFLGYLPLAHVFELLSESV-CLLCGVAIGYSTPLTMIDT 364
+ + + + P D F ++ L L G
Sbjct: 194 GGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATT----------- 242
Query: 365 SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA 424
VL+ P +R+++ + + +K +F + + R+
Sbjct: 243 -------------VLYDGRPFYSP---ERLWEALEK-------YKVTIFGTSPTFLRRLM 279
Query: 425 KRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET 484
K G + +R++ S G PL+P+ E L ++ YG TET
Sbjct: 280 KLGLG------------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTET 327
Query: 485 TSC 487
Sbjct: 328 GMG 330
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 88.7 bits (220), Expect = 1e-18
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 7/195 (3%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ +++ A GLR LG V I+ + R E + A V I L
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
E +AH + + V +++T+ + L L + TLI + D + G E
Sbjct: 87 EQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGD---PAHASEGHPGEEPA 143
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
+ ++ G P D A I+YTSGSTG PKGVVL+H N+++ ++ + +
Sbjct: 144 SWPKL----LALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL 199
Query: 321 HIEPNDVFLGYLPLA 335
P+D L LPL+
Sbjct: 200 ENRPDDRLLAVLPLS 214
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 88.4 bits (220), Expect = 2e-18
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKF--RNILKLTPRVSTLIYMED---QLTSTDTT 251
T E A+ I + ++ VIT+ L K + P +IY+ED +++ D
Sbjct: 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKL 757
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
++P + + R G P DTA I+++SGS G PKGV+L+H N++S
Sbjct: 758 TALLAARLLPARLL--------KRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILS 809
Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAHVF 338
++ SD ++ +DV L LP H F
Sbjct: 810 NIEQISDVFNLRNDDVILSSLPFFHSF 836
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 84.3 bits (209), Expect = 3e-17
Identities = 64/239 (26%), Positives = 96/239 (40%), Gaps = 71/239 (29%)
Query: 259 IVPFKQIVKRGSESGSRYEGSPP--TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL--- 313
VP++ +V + G + S P TP D A+I+YTSG+TG PKG LTH N+ +
Sbjct: 193 TVPWETLV-DAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQG 251
Query: 314 KAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIG--------YSTPLTMIDTS 365
KA+ + + + L LP+ H + L ++CL V+IG L +
Sbjct: 252 KAWVPGLG-DGPERVLAALPMFHAYGL---TLCLTLAVSIGGELVLLPAPDIDLIL---- 303
Query: 366 SKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAK 425
+K+ PT L VP + ++I + +
Sbjct: 304 DAMKKHP--------PTWLPGVPPLYEKIAEAA-------------------------EE 330
Query: 426 RGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET 484
RG +D L G VR SG L T EL + +++GYGLTET
Sbjct: 331 RG-----VD----------LSG-VRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTET 373
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 83.1 bits (206), Expect = 4e-17
Identities = 67/354 (18%), Positives = 120/354 (33%), Gaps = 85/354 (24%)
Query: 144 QVNDEAEAFGKGLRSLGQ-EPRHNVVIFAETRAEWMIAAQ-ACFKQNIPVVTIYATLGEE 201
++++ A + LR+ G P V + E R+ ++ A A K V + E
Sbjct: 4 ELDERANRLARHLRAAGGVGPGDRVAVLLE-RSAELVVAILAVLKAGAAYVPLDPAYPAE 62
Query: 202 AIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVP 261
+A + + +++T L + + + D L + P
Sbjct: 63 RLAFILEDAGARLLLTDSALAS-------RLAGLVLPVILLDPLELAALDD--APAPPPP 113
Query: 262 FKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH 321
+P P D A ++YTSGSTG PKGVV+TH ++++ L +
Sbjct: 114 D----------------APSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157
Query: 322 IEPNDVFLGYLPLAH---VFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASV 378
++P+D L + L+ V E+ LL G + + + +
Sbjct: 158 LDPDDRVLQFASLSFDASVEEIF---GALLAGATL-----VVPPEDEERDDAALLAALIA 209
Query: 379 LHP-TALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV 437
HP T L P +L + + ++
Sbjct: 210 EHPVTVLNLTPSLLALLAAALPPALA---------------------------------- 235
Query: 438 FGQTKKLLGGRVRLILSGGAPLSPDTHE-LIKVCLCEKVIQGYGLTETTSCATV 490
+RL++ GG L+P + ++I YG TETT +T
Sbjct: 236 ----------SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA 279
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 81.5 bits (202), Expect = 1e-16
Identities = 58/212 (27%), Positives = 78/212 (36%), Gaps = 60/212 (28%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A+I+YTSG+TG PKGVVLTH N+ + +A +A +DV L LPL HV L
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLF--- 145
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRG----TKGDASVLHP--TALTAVPLILDRIYKGV 398
L C + G +S + DA L P T VP I
Sbjct: 146 NALHCPLWAG----------ASVEFLPRFDPQERDALRLLPRITVFMGVPTI-------- 187
Query: 399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAP 458
Y R L++ F +RL +SG A
Sbjct: 188 --------------------YTR----------LLEHYEFDDAAAAAARNLRLFVSGSAA 217
Query: 459 LSPDTHELIKVCLCEKVIQGYGLTET---TSC 487
L E + +++ YG+TET S
Sbjct: 218 LPVPVLERWEERTGHTLLERYGMTETGMALSN 249
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 80.8 bits (200), Expect = 3e-16
Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 25/223 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ ++ GL + G V++ + E+ + A V T
Sbjct: 34 TYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTP 93
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
IA + ++ + ITT +L K ++ + ++ ++ +
Sbjct: 94 AEIAKQVKDSGAKLAITTSELAEKLASL-----ALEPVVLLDS-------------ADDG 135
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
I D A + Y+SG+TG KGV+LTH N+I+ +
Sbjct: 136 S-AAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGE 194
Query: 321 HI--EPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM 361
+ DV L LP+ H++ L +V LL + +G +T + M
Sbjct: 195 GPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVM 233
Score = 44.6 bits (106), Expect = 9e-05
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 431 PLIDKVVFGQTKKLLGGRVRL-----ILSGGAPLSPDTHELIKVCLCE-KVIQGYGLTET 484
P++ +V K + + L I SG APL + E + ++ QGYG+TE
Sbjct: 254 PVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTE- 312
Query: 485 TSCATVMHLNDMGNINSN 502
+S T M +
Sbjct: 313 SSPVTTMCPVPEKDPKPG 330
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 80.0 bits (198), Expect = 6e-16
Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 33/211 (15%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAA-QACFKQN-IPV- 191
G E++S+ ++ +EAE GLR+LG +P + VI R E + A AC +PV
Sbjct: 35 GSEEFQSYAELLEEAERILAGLRALGLKPG-DSVILQLERNEDFVTAFWACVLGGFVPVP 93
Query: 192 VTIYATLGEEAIA----HGINET-EVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246
V + T E A I E +++T L+ + + + ++L
Sbjct: 94 VAVPPTYDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALRVLAIEEL- 152
Query: 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
+ P P D A+++ TSGSTG PK VVLTH
Sbjct: 153 -----------------------RSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTH 189
Query: 307 DNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
N+++ P+DV L ++PL HV
Sbjct: 190 RNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 78.1 bits (193), Expect = 2e-15
Identities = 78/353 (22%), Positives = 121/353 (34%), Gaps = 105/353 (29%)
Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
LR+LG + + + +W+IA AC + I + I + H +N+ +++
Sbjct: 19 LRALGV---KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLL 75
Query: 216 ITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQI-VKRGSESGS 274
I+ + T F E +
Sbjct: 76 ISDDPDAASALH-----------------------TPFATLGEDLYIALRPSAN------ 106
Query: 275 RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL 334
P TA I YTSGSTG PKGV L+ + + ++ ++A+ I + L LPL
Sbjct: 107 ----PVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERHLCLLPL 162
Query: 335 AHVFELLSESVCLLCGVAIGYSTPLTM---IDTSSKIKRGTKGDASVLHPTALTAVPLIL 391
A + E + G PL M + + G G +S L P A
Sbjct: 163 ATLLENI-----------AGVYAPLLMGATVILVPLAELGLSG-SSGLDPAQFVAA---- 206
Query: 392 DRIYKGVHEKVSRASP--------FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
+SR P AL A ++G P
Sbjct: 207 ----------LSRWQPHSLILVPQLLMALVA--------AVEQGPLPP------------ 236
Query: 444 LLGGRVRLILSGGAPLSPDTHELIKVC--LCEKVIQGYGLTETTSCATVMHLN 494
+R + GGA +SP L++ L V +GYGL+E CA+V+ LN
Sbjct: 237 ---ESLRFVAVGGARVSP---SLLQRARALGLPVYEGYGLSE---CASVVSLN 280
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 75.7 bits (187), Expect = 6e-15
Identities = 54/215 (25%), Positives = 79/215 (36%), Gaps = 61/215 (28%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
P D A+I++TSG+TG PKGV LTH N++++ + + + + P+D L +PL H+ L
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGL-- 58
Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASV-------LHPTALTAVPLILDRIY 395
V LL + G S K AS T +AVP I
Sbjct: 59 -IVSLLATLLAGGSVVCP-----------PKFSASKFWDDIAKYRVTWYSAVPTIH---- 102
Query: 396 KGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSG 455
+ L AK P R+R I S
Sbjct: 103 --------------QILLKT--------AKPNPGKPPP--------------RLRFIRSA 126
Query: 456 GAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV 490
APL P + ++ V++ YG+TE
Sbjct: 127 SAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIAS 161
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 76.5 bits (189), Expect = 6e-15
Identities = 78/366 (21%), Positives = 126/366 (34%), Gaps = 124/366 (33%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFK----QNIPVVTIYA 196
++ +++D A+ L LG P V E+++ AC + N P+V IY
Sbjct: 3 TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVIN-PIVPIY- 60
Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
E + + + ++ +FR
Sbjct: 61 --RERELGFILRQARARVLFVPD----EFR------------------------------ 84
Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
G Y P D A+++YTSG+TG PKGV+ TH+ +++ ++++
Sbjct: 85 ----------------GFDYAA---MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125
Query: 317 SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
+ + + P+DV L PLAH+ G G PL + G
Sbjct: 126 VERLGLTPDDVVLMPSPLAHIT-----------GFLYGLELPLLL------------GAT 162
Query: 377 SVLH----PTALTAVPLILDRIYKGVHEKVS---RASPFKRALFAFAFEYKRKWAKRGFR 429
VL P A+ LI + V+ A+PF L A A
Sbjct: 163 VVLQDRWDPAR--ALELIRE-------HGVTFTMGATPFLADLLAAA------------- 200
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
L +R+ L GGAP+ + L KV++ YG+TE T
Sbjct: 201 ---------DAAGPDL-PSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTE-VPLVT 249
Query: 490 VMHLND 495
V +D
Sbjct: 250 VGTPDD 255
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 75.4 bits (186), Expect = 2e-14
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 20/212 (9%)
Query: 141 SFNQVNDEAEAFGKGL-RSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLG 199
S+ ++ +EAE L + G V+++ + +++IA A + N VV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLI------YMEDQ--------L 245
EE +AH + ++ + I +L PK R+ +I Y+ + L
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAP-AVGNLRLRHVIVAQYSDYLPAEPEIAVPAWL 155
Query: 246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLT 305
+ +V +K+ + G G P D A++ YTSG+TG PKG + T
Sbjct: 156 RAEPPLQALAPGGVVAWKEALAAGLAPPPHTAG----PDDLAVLPYTSGTTGVPKGCMHT 211
Query: 306 HDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
H +++ + P V L LPL HV
Sbjct: 212 HRTVMANAVGSVLWSNSTPESVVLAVLPLFHV 243
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 74.0 bits (183), Expect = 3e-14
Identities = 40/166 (24%), Positives = 60/166 (36%), Gaps = 32/166 (19%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL---AHVF 338
P D A ++YTSGSTG PKGV++ H +++ L + + D L + A V+
Sbjct: 91 DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVW 150
Query: 339 ELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP-------TALTAVPLIL 391
E+ LL G L + D L T L VP +L
Sbjct: 151 EIF---PPLLSGAT------LVLAP------PEVLRDPEALAELLREHRITVLHLVPSLL 195
Query: 392 DRIYKGVHEKVSRASPFKRALF----AFAFEYKRKWAKRGFRCPLI 433
+ + A P R + A E R+W + L+
Sbjct: 196 RAL---LDALEPAALPSLRLVIVGGEALPAELVRRWRELFPGARLV 238
Score = 34.7 bits (81), Expect = 0.093
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 448 RVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATV 490
+RL++ GG L + ++ +++ YG TETT T
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTY 252
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 74.3 bits (183), Expect = 4e-14
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 15/203 (7%)
Query: 126 GRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACF 185
GR K + D ++ ++ +E +G LR LG E + V++ E+ A
Sbjct: 17 GRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAI 76
Query: 186 KQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQL 245
K V I L + + +N++ +++ + +L + L+ P + +I +
Sbjct: 77 KIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAG 136
Query: 246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLT 305
+ Q++ +E E + + D A +Y+SGSTG PKGVV
Sbjct: 137 PGAL-----------SYAQLIATAAEEL---EAAATSADDMAFWLYSSGSTGRPKGVVHL 182
Query: 306 HDNMISTLKAFSDAV-HIEPNDV 327
H +M+ T +A++ V I +DV
Sbjct: 183 HHDMLVTAEAYAKNVLGITEDDV 205
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 72.2 bits (178), Expect = 9e-14
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVF 338
P D A+I YTSG+TG PKG +LTH N+++ + + + + D L +PL HVF
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF 56
Score = 41.4 bits (98), Expect = 7e-04
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 449 VRLILSGGAPLSPDTH-ELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
+R +SGGAP+ P+ + + ++ GYG+TET+ T +D
Sbjct: 119 LRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDD 166
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 72.6 bits (179), Expect = 1e-13
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 35/211 (16%)
Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
V GD ++ ++N+ A + LR+ G P V + E E ++A A K V
Sbjct: 7 VYGDRSL-TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYV 65
Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
+ E +A + ++ +++T L P R L+ +E++L + D
Sbjct: 66 PLDPAYPAERLAFMLEDSGARVLLTDESLAPLAR------ADQLPLVILEEELDAEDAGP 119
Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
D A +MYTSGSTG PKGV + H ++
Sbjct: 120 ------------------------PAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRL 155
Query: 313 LKAFSDAVHIEPNDVFLGYLPL---AHVFEL 340
++ ++ + ++P+D FL PL A FE+
Sbjct: 156 VRN-TNYIALDPDDRFLQLSPLSFDASTFEI 185
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 72.4 bits (178), Expect = 2e-13
Identities = 84/328 (25%), Positives = 136/328 (41%), Gaps = 95/328 (28%)
Query: 183 ACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTL--IY 240
A ++ IP + Y T G + + I E+ + T+ L K + L +++ + +Y
Sbjct: 275 ASLRRRIPAMMNY-TAGVKGLTSAITAAEIKTIFTSRQFLDK-GKLWHLPEQLTQVRWVY 332
Query: 241 MEDQLTSTDTTNFKQGI---EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTG 297
+ED L TT K I ++P VK+ P+D A+I++TSGS G
Sbjct: 333 LED-LKDDVTTADKLWIFAHLLMPRLAQVKQ-------------QPEDAALILFTSGSEG 378
Query: 298 TPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST 357
PKGVV +H ++++ ++ PND F+ LPL H F G+ +G T
Sbjct: 379 HPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSF-----------GLTVGLFT 427
Query: 358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAF 417
PL T +++ L+P+ L Y+ V E V
Sbjct: 428 PLL---TGAEV---------FLYPSPLH---------YRIVPELV--------------- 451
Query: 418 EYKRKWAKRGFRCPLIDKVVFGQTKKLLG-----------GRVRLILSGGAPLSPDTHEL 466
Y R C V+FG T LG R+R +++G L T +L
Sbjct: 452 -YDRN-------C----TVLFG-TSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQL 498
Query: 467 IKVCLCEKVIQGYGLTETTSCATVMHLN 494
+ ++++GYG+TE CA V+ +N
Sbjct: 499 WQDKFGLRILEGYGVTE---CAPVVSIN 523
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 71.1 bits (175), Expect = 3e-13
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
DTA I+YTSG+TG PKGV+LTH ++ + + + + P+DV L LPL H+
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI 134
Score = 38.3 bits (90), Expect = 0.008
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT 197
++ ++ + GL +LG P V + + E++ A A K V I
Sbjct: 2 RRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61
Query: 198 LGEEAIAHGINETEVNIVIT 217
L E +AH ++ + +++
Sbjct: 62 LRGEELAHILDHSGARLIVV 81
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 71.9 bits (177), Expect = 3e-13
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVT-IYATLG 199
++ ++ + + F L+ LG E V IF E A K N +V ++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALK-NGAIVGPLFEAFM 133
Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
EEA+ + ++E ++ITT LL R P + ++ + + + T
Sbjct: 134 EEAVRDRLEDSEAKVLITTPALLE--RKPADDLPSLKHVLLVGEDVEEGPGT-------- 183
Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI 310
+ F ++++ S+ ++ +D AI+ YTSGSTG PKGV+ H+ M+
Sbjct: 184 LDFNALMEQASDE---FDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAML 231
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 70.8 bits (174), Expect = 4e-13
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
P D A I ++SGSTG PKGV+LTH N+++ ++A +A I DVFL ++PL H L+
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHDMGLIG 164
Query: 343 -ESVCLLCGV 351
G+
Sbjct: 165 FHLTPTALGI 174
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 69.6 bits (171), Expect = 6e-13
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
D A I+YTSGSTG PKGV+L+H N+ + ++ + + + +D L LP +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSF 54
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 69.9 bits (172), Expect = 9e-13
Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 59/217 (27%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A+ + G+TG PK + TH++ + + +A ++A ++P V+L LP AH F L S
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTL--SS 197
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP--TALTAVPLILDRIYKGVHEKV 402
LL + G GT VLH + A PLI EKV
Sbjct: 198 PGLLGALLAG----------------GT----VVLHHPPSPDVAFPLI-------EREKV 230
Query: 403 SRAS---PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
+ + A +W + +R+I GGAPL
Sbjct: 231 THTALVPALLNLWLEAA-----EWDQADLS------------------SLRVIQVGGAPL 267
Query: 460 SPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
SP+ ++ L + Q +G+ E T L+D
Sbjct: 268 SPELARRVEERLGCPLQQVFGMAEGLVNYT--RLDDP 302
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 69.1 bits (170), Expect = 2e-12
Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 31/254 (12%)
Query: 92 TMEKVLRYVVTRFSDQRC-LGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQ-VNDEA 149
+ + L+ D + LG E + P+ R + + N N A
Sbjct: 20 GILRGLKRTALITPDSKRSLGDV--FEEAAARHPD-RPALLFEDQSISYAELNARANRYA 76
Query: 150 EAF-GKGLRSLGQEPRHNVV-IFAETRAEWMIAAQACFKQNIPVVT--IYATLGEEAIAH 205
+G+ + +VV + E R E++ A K + V + +AH
Sbjct: 77 HWAAARGVG------KGDVVALLMENRPEYLAAWLGLAK--LGAVVALLNTQQRGAVLAH 128
Query: 206 GINETEVNIVITTHDLLPKF---RNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPF 262
+N + +I +L+ F R L PR+ +
Sbjct: 129 SLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYE-DLAAAA----- 182
Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI 322
G+ + + S T KDTA +YTSG+TG PK V++H + + F + +
Sbjct: 183 -----AGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRL 237
Query: 323 EPNDVFLGYLPLAH 336
P+DV LPL H
Sbjct: 238 TPDDVLYCCLPLYH 251
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 68.2 bits (167), Expect = 4e-12
Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 17/237 (7%)
Query: 115 ILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR 174
+LA + E+ P+ + V G ++ + A A L + G + V + R
Sbjct: 26 MLARQAERYPDRPLL---VFGG-TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNR 81
Query: 175 AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTP 233
E++ C V I L + H + + +++ LL P
Sbjct: 82 IEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLP 141
Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
+ + S G P + + P DTA I+YTS
Sbjct: 142 LPAVWLLDAPASVSVP-----AGWSTAPLPP-------LDAPAPAAAVQPGDTAAILYTS 189
Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCG 350
G+TG KGV H + ++ + I +DV LPL H L + LL G
Sbjct: 190 GTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAG 246
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 67.6 bits (166), Expect = 4e-12
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA---HVF 338
P D A I++TSGSTG PKGV ++H N+ S L + + DVF P + VF
Sbjct: 95 DPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVF 154
Query: 339 ELLSESVCLLCG 350
+L L G
Sbjct: 155 DLF---PALASG 163
Score = 29.1 bits (66), Expect = 5.5
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 132 YVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV 191
V+G ++ ++ + A+ L +LG V ++ + A AC K
Sbjct: 10 LVVGGDTL-TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAY 68
Query: 192 V 192
V
Sbjct: 69 V 69
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 67.6 bits (165), Expect = 6e-12
Identities = 67/250 (26%), Positives = 105/250 (42%), Gaps = 61/250 (24%)
Query: 249 DTTNFKQG-IEIVPFKQIVKRGSESGSRYEGSPPTPK-DTAIIMYTSGSTGTPKGVVLTH 306
+ +F IE F +++K + + P + D A IMY+SG+TG KGVVLTH
Sbjct: 165 ENYDFDSKRIEFPKFYELIKEDFDFVPK----PVIKQDDVAAIMYSSGTTGASKGVVLTH 220
Query: 307 DNMISTLKAF-----SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM 361
N+I+ ++ F S + ++V+L LP+ H++ L V LL ++G ST + M
Sbjct: 221 RNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLL---SLG-STIVVM 276
Query: 362 IDTSSKIKRGTKGDA-SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYK 420
+R D V+ +T P++ P AL A
Sbjct: 277 -------RRFDASDMVKVIDRFKVTHFPVV---------------PPILMALTKKA---- 310
Query: 421 RKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGY 479
K V G+ K L + + G APLS + ++ IQGY
Sbjct: 311 --------------KGVCGEVLKSL----KQVSCGAAPLSGKFIQDFVQTLPHVDFIQGY 352
Query: 480 GLTETTSCAT 489
G+TE+T+ T
Sbjct: 353 GMTESTAVGT 362
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 65.9 bits (161), Expect = 1e-11
Identities = 58/352 (16%), Positives = 111/352 (31%), Gaps = 101/352 (28%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ ++ EA K L++ G V + + E ++ AC + + L E
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ + + +V +++T L + + D++ + +
Sbjct: 61 NERTNQLEDLDVQLLLTD----------SLLEEKDFQADSL-DRIEAAGRYE----TSLS 105
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
+ A +M+TSG+TG PK V T N ++ + +
Sbjct: 106 ASFNM------------------DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL 147
Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAI----GYSTPLTMIDTSSKIKRGTKGDA 376
+D +L LPL H+ L L+ G + ++ L MI + ++
Sbjct: 148 GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLLEMI-ANERV-------- 198
Query: 377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV 436
T ++ VP L+R+ G +
Sbjct: 199 -----THISLVPTQLNRL-----------------------------LDEGGHNENL--- 221
Query: 437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKV--IQGYGLTETTS 486
R IL GG+ + LI+ + YG+TET S
Sbjct: 222 -------------RKILLGGSAIPA---PLIEEAQQYGLPIYLSYGMTETCS 257
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 66.1 bits (162), Expect = 1e-11
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA---HVF 338
P D A ++YTSGSTG PKGV ++H +++ L + + + +D L ++ V
Sbjct: 91 DPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISVL 150
Query: 339 ELLSESVCLLCG 350
ELL + LL G
Sbjct: 151 ELL---LPLLSG 159
Score = 32.9 bits (76), Expect = 0.41
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 447 GRVRL-ILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHL 493
GR L L GG L D L+ ++ YG TETT +T +
Sbjct: 205 GRESLTALCGGEALPRDLAERLLS--TGAELWNMYGPTETTIWSTCARV 251
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 65.8 bits (161), Expect = 2e-11
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 256 GIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA 315
G+ VP V+ + S RY P P A+I+YTSG+TG PKGVVL+ + + L A
Sbjct: 106 GLPHVP----VRLHARSWHRYPE--PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDA 159
Query: 316 FSDAVHIEPNDVFLGYLPLAHV 337
++A +DV + LPL HV
Sbjct: 160 LAEAWQWTADDVLVHGLPLFHV 181
Score = 33.4 bits (77), Expect = 0.30
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 447 GRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET 484
RL++SG A L + + + ++ YG+TET
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTET 278
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 64.5 bits (158), Expect = 3e-11
Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 62/207 (29%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
A I++TSGSTG PK VV T N +++ + ++ + + P+D +L LPL HV L +
Sbjct: 78 RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL---A 134
Query: 345 V---CLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401
+ LL G A+ ++ + + + T ++ VP L R+ + + +
Sbjct: 135 IVMRSLLAGGAL-------VLPDKFDAEAIAEALEN-HGVTHISLVPTQLQRLLESLGAR 186
Query: 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSP 461
+ + L LGG AP+ P
Sbjct: 187 WLSS--LRAVL--------------------------------LGG---------APIPP 203
Query: 462 DTHELIKVCLCEK--VIQGYGLTETTS 486
L++ + YG+TET S
Sbjct: 204 ---SLLEQARQRGIPLYPTYGMTETAS 227
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 64.8 bits (158), Expect = 5e-11
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 27/237 (11%)
Query: 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
Y WR Q+ D + +GL +LG +P V I+A AEW++ A + +V I
Sbjct: 46 YTWR---QLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102
Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRN------ILKLTPRVSTLIYMEDQLTSTDT 250
+ + + ++ V VI F+ + +L P ++ L
Sbjct: 103 AYRASELEYALGQSGVRWVIC----ADAFKTSDYHAMLQELLPGLAEGQPGA--LACERL 156
Query: 251 TNFKQGIEIVP--------FKQIVKRGSE-SGSRYEGSPP--TPKDTAIIMYTSGSTGTP 299
+ + + P + ++ RG S D I YTSG+TG P
Sbjct: 157 PELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFP 216
Query: 300 KGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL-LSESVCLLCGVAIGY 355
KG L+H N+++ ++++ + +D +PL H F + L+ C+ G + Y
Sbjct: 217 KGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVY 273
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 64.4 bits (157), Expect = 7e-11
Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 34/221 (15%)
Query: 130 KKYVMGDYEWR-SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQN 188
K V+ ++ +++ ++ A L + G EP V E+ I AC K
Sbjct: 39 KIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG 98
Query: 189 IPVVTIYATLGEEAIAHGINETEVNIVI-------TTHDLLPKFRNILKLTPRVSTL--I 239
V + + E + +N+ + + T L IL L ++ L I
Sbjct: 99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDL-----ILPLQNQLPQLQQI 153
Query: 240 YMEDQL---TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDT-AIIMYTSGS 295
D+L TS+ + QI+ + T D A +++TSG+
Sbjct: 154 VGVDKLAPATSSLS-----------LSQII----ADYEPLTTAITTHGDELAAVLFTSGT 198
Query: 296 TGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
G PKGV+LTH+N++++ +A+ +++ DVF+ PL H
Sbjct: 199 EGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH 239
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 63.3 bits (155), Expect = 8e-11
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A+I+YTSG+TG PKGV+LTH N+++ V + P DV+L PL H +
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA----AGG 57
Query: 345 VCLLCGVAIG 354
+ LL +A G
Sbjct: 58 LFLLPALAAG 67
Score = 39.4 bits (93), Expect = 0.004
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVM 491
+RLI+ G AP+ + + +QGYG+TET T++
Sbjct: 116 SLRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLL 159
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 63.5 bits (155), Expect = 8e-11
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
D A+I YTSG+TG PKG + TH +++T A + + P+ V L +LPL HV
Sbjct: 85 DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV 137
Score = 33.5 bits (77), Expect = 0.24
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 450 RLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVM 491
+++ GGA L P E +K +GYGLTET +C
Sbjct: 202 KVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFN 243
Score = 30.8 bits (70), Expect = 1.7
Identities = 13/81 (16%), Positives = 35/81 (43%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ ++ + + L+ G V ++ + +++IA A + VV + E
Sbjct: 3 TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62
Query: 201 EAIAHGINETEVNIVITTHDL 221
+ H +N++ ++I +L
Sbjct: 63 AELEHILNDSGARVLIVGSEL 83
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 63.0 bits (154), Expect = 1e-10
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA---HVF 338
+P D A ++YTSGSTG PKGVV+TH N+ + L+A + I P D L + +A +
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQFASIAFDVSIL 156
Query: 339 ELL 341
E+
Sbjct: 157 EIF 159
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 62.9 bits (153), Expect = 2e-10
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 15/188 (7%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ ++ + G LR LG + V++ ++ IA + I V + L
Sbjct: 32 SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ A+ + ++ +V + +LLP + L +P + + +
Sbjct: 92 DDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQ---------- 141
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DA 319
+++ SE + + D A +Y+SGSTG PKGVV TH N T + ++ +
Sbjct: 142 -LAELLATESEQF---KPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNT 197
Query: 320 VHIEPNDV 327
+ I +DV
Sbjct: 198 LGIREDDV 205
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 62.6 bits (153), Expect = 2e-10
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
V GD ++ ++ + A L + G P +V I+A R E++ A FK V
Sbjct: 23 VCGDRRL-TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPV 81
Query: 193 TI---YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249
+ Y E+ + + +++++ ++ + P+ +L P++ TL+ +ED +
Sbjct: 82 NVNYRYV---EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVED---GSG 135
Query: 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM 309
V ++ + GS E SP D ++YT G+TG PKGV+ +++
Sbjct: 136 NDLLPGA---VDYEDALAAGSPERDFGERSP----DDLYLLYTGGTTGMPKGVMWRQEDI 188
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 62.6 bits (153), Expect = 2e-10
Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 21/209 (10%)
Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
V GD W ++ +++ L LG + V + + AC + V
Sbjct: 31 VFGDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHV 89
Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
+ L E +A+ ++ + + L P L L P + + + L +
Sbjct: 90 PVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLI--LSLVLGGRE--- 144
Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSP-PTPKDTAIIMYTSGSTGTPKGVVLTHDNMI- 310
+ F +E+GS E D A I+YTSG+ PKG +LTH +I
Sbjct: 145 --APGGWLDFADW----AEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIA 198
Query: 311 ---STLKAFSDAVHIEPNDVFLGYLPLAH 336
S + A + +D+ L LPL H
Sbjct: 199 EYVSCIVAGD----MSADDIPLHALPLYH 223
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 62.6 bits (153), Expect = 2e-10
Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 62/241 (25%)
Query: 272 SGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY 331
+ + + + P D A I++TSGSTGTPKGVV TH + ++A + IEP ++ L
Sbjct: 162 AAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDL-- 219
Query: 332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLIL 391
F L + L G A+G ++ + +D + P T P
Sbjct: 220 ----PTFPLFA-----LFGPALGMTSVIPDMDPT--------------RPA--TVDP--- 251
Query: 392 DRIYKGVH-EKVSR--ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV-FGQTKKLLGG 447
+++ + V+ SP L++++ +G+ +
Sbjct: 252 AKLFAAIERYGVTNLFGSP-----------------------ALLERLGRYGEANGIKLP 288
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCE--KVIQGYGLTET---TSCATVMHLNDMGNINSN 502
+R ++S GAP+ E + L +++ YG TE +S + L N
Sbjct: 289 SLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDN 348
Query: 503 G 503
G
Sbjct: 349 G 349
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 62.3 bits (152), Expect = 4e-10
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
P D A+I++TSGS GTPKGVVL+H N+++ + + P D LP+ H F L
Sbjct: 792 PDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTG 851
Query: 343 ESVC-LLCGVAIG-YSTPL------TMI-DTSSKIKRGT----KGDASVLHP 381
V LL GV + Y +PL +I DT++ I GT G A HP
Sbjct: 852 GLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAHP 903
Score = 28.8 bits (65), Expect = 8.2
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 449 VRLILSGGAPLSPDTHELIKVCLCEK----VIQGYGLTETT---SCATVMH 492
+R + +G + +T + EK +++GYG+TET + T MH
Sbjct: 909 LRYVFAGAEKVKEETRQT----WMEKFGIRILEGYGVTETAPVIALNTPMH 955
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 61.5 bits (150), Expect = 5e-10
Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 24/212 (11%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV-- 192
G ++ L SLG +P V A + A +P +
Sbjct: 21 GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFA-----VPGMGA 75
Query: 193 ---TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLI-YMEDQLTST 248
T+ L E IA+ IN E ++ D LP I P V ++ Y + + T
Sbjct: 76 VLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPET 135
Query: 249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTH- 306
N + ++++++ S P ++TA + YTSG+TG PKGVV +H
Sbjct: 136 SLPN------VYAYEELLEEESP----EYEWPELDENTAAGLCYTSGTTGNPKGVVYSHR 185
Query: 307 DNMISTLK-AFSDAVHIEPNDVFLGYLPLAHV 337
++ TL A D++ + +D L +P+ HV
Sbjct: 186 SLVLHTLASALPDSLGLSESDTVLPVVPMFHV 217
Score = 32.2 bits (74), Expect = 0.62
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 19/57 (33%)
Query: 447 GRVRLILSGGA--PLSPDTHELIKVCLCEK-------VIQGYGLTETTSCATVMHLN 494
+R ++ GG+ P S L EK VI +G+TET+ TV L
Sbjct: 279 SSLRRVVVGGSALPRS----------LIEKLEERGVEVIHAWGMTETSPLGTVSRLK 325
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 61.2 bits (149), Expect = 5e-10
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 232 TPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRY-------EGSPPTP- 283
TPR ++ ED L K + PF E G R P P
Sbjct: 88 TPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADLLAADPIDPV 147
Query: 284 ----KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP-NDVFLGYLPLAH 336
D A++ TSGSTG+PK V +TH N+ + +A A + DV + +LPL H
Sbjct: 148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 60.4 bits (147), Expect = 6e-10
Identities = 49/223 (21%), Positives = 76/223 (34%), Gaps = 45/223 (20%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
P D A +T G+TG PK +H N ++ + + P DV L LPL HV +
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60
Query: 343 ESV-CLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401
+ L G + TP + + + T L+AVP +L + +
Sbjct: 61 TGLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTVLAALLQ----- 113
Query: 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSP 461
PL D + +R L+G APL
Sbjct: 114 ----------------------------VPLGDADI---------SSLRYALTGAAPLPV 136
Query: 462 DTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL 504
+ + V++GYG+TE T + + S GL
Sbjct: 137 EVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGL 179
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 61.0 bits (149), Expect = 7e-10
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 268 RGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV 327
+ + +E P D A I+YTSG+TG KG +L+H N++S D P+DV
Sbjct: 140 AAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDV 199
Query: 328 FLGYLPLAHV 337
+ LP+ H
Sbjct: 200 LIHALPIFHT 209
Score = 32.5 bits (75), Expect = 0.47
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET 484
+RL +SG APL +TH + +++ YG+TET
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTET 306
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 60.8 bits (148), Expect = 9e-10
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Query: 277 EGSPPT----PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA----VHIEPNDVF 328
E P P D + Y+SG+TG PKGV+LTH +++++ D ++ +DV
Sbjct: 168 ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVI 227
Query: 329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM 361
L LP+ H++ L S LLCG+ +G + L M
Sbjct: 228 LCVLPMFHIYSLNS---VLLCGLRVG-AAILIM 256
Score = 32.6 bits (75), Expect = 0.45
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 449 VRLILSGGAPLSPDTHELIKVCLCEKVI-QGYGLTE 483
+R++LSG APL + + + L V+ QGYG+TE
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE 335
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 60.4 bits (147), Expect = 1e-09
Identities = 52/218 (23%), Positives = 75/218 (34%), Gaps = 53/218 (24%)
Query: 278 GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS---TLKAFSDAVHIEPNDVFLGYLPL 334
G P P D A +T G+TG PK TH N ++ P D LPL
Sbjct: 207 GRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL---GPGDTVFCGLPL 263
Query: 335 AHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAV-PLILDR 393
HV LL V L PL RG A V+ T P ++
Sbjct: 264 FHVNALL---VTGL--------APLA---------RG----AHVVLATPQGYRGPGVIAN 299
Query: 394 IYKGV-HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLI 452
+K V +++ S A + P+ + +R
Sbjct: 300 FWKIVERYRINFLSGVPTVYAALL------------QVPVDGHDI---------SSLRYA 338
Query: 453 LSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV 490
L G APL + + ++++GYGLTE T ++V
Sbjct: 339 LCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSV 376
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 59.5 bits (145), Expect = 2e-09
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH--- 336
P D A +++TSGSTG PKGV++TH ++T+ + + P D L L
Sbjct: 122 RVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHFDLS 181
Query: 337 ---VFELLS 342
+F LS
Sbjct: 182 VYDIFGALS 190
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 58.8 bits (143), Expect = 3e-09
Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 57/192 (29%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
+++++ E GL +LG V I+ E ++A A K V I++ G
Sbjct: 9 TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+A+A + + E ++I T+
Sbjct: 69 DAVATRLQDAEAKVLI-----------------------------TADGFL--------- 90
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
+RG D A+I+YTSG+TG PKG V TH +KA D
Sbjct: 91 ------RRGKRV--------DLKDDPAMIIYTSGTTGKPKGTVHTHAGFP--VKAAKDIG 134
Query: 321 H---IEPNDVFL 329
++P D L
Sbjct: 135 FCFDLKPGDRLL 146
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 59.2 bits (143), Expect = 3e-09
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 277 EGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
G P+P D ++YTSG+TG PKGV+ T + + S + +++ + + DV L P+AH
Sbjct: 188 AGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 58.3 bits (141), Expect = 5e-09
Identities = 53/221 (23%), Positives = 80/221 (36%), Gaps = 62/221 (28%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
P D +I +TSG+TG PKGV ++H +I A V +DV+L PL H+
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI----- 225
Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVL-------HPTALTAVPLILDRIY 395
G G S+ L M+ + K DA + T++ VP ++ +
Sbjct: 226 -------G---GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLI 275
Query: 396 KGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSG 455
+ ++ F VR IL+G
Sbjct: 276 SLTRKSMTWK---------------------VFPS------------------VRKILNG 296
Query: 456 GAPLSPD-THELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
G LS + K+ K+ YG+TE S T M L+D
Sbjct: 297 GGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHD 337
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 58.1 bits (141), Expect = 5e-09
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST---LKAF 316
V F + G+ ++ P D A + YT G+TG KG L H N+++ ++A+
Sbjct: 182 VRFNDALAEGA--RQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAW 239
Query: 317 SDAVHIEPNDV----FLGYLPLAHVFELLSESVCLLCGVAIG 354
+ F+ LPL H+F L +VC L G+ G
Sbjct: 240 LQPAFEKKPRPDQLNFVCALPLYHIFAL---TVCGLLGMRTG 278
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 57.5 bits (139), Expect = 9e-09
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 40/205 (19%)
Query: 207 INETEVNIVITTHDLLPKFRNILKLTPRV-STLIYMED---QLTSTDTTNFKQGIEI--- 259
N V V+T+ L+ +LIYME+ +L+ + K I I
Sbjct: 110 ANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWE----KCRIGIYMS 165
Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319
+PF+ +++ S P+D A+I++TSG+ PKGV LTH N+++ +A
Sbjct: 166 IPFEWLMRWFGVSDK-------DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF 218
Query: 320 VHIEPNDVFLGYLPLAHVFELLSESVC-LLCGVAIGYS-TPLT------MIDTSSKIKRG 371
+ +DV + +LP H + S ++ LL GV + ++ PL MID +
Sbjct: 219 FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEA------ 272
Query: 372 TKGDASVLHPTALTAVPLILDRIYK 396
T L + P+ D I K
Sbjct: 273 --------KVTFLGSTPVFFDYILK 289
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 57.7 bits (139), Expect = 1e-08
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 39/201 (19%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQN---IPVVTIYAT 197
S+ +++ A LR+ G P V I AE E ++A A K +P+ Y
Sbjct: 2030 SYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPA 2089
Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
E +A+ + ++ +++T LL ++L G+
Sbjct: 2090 ---ERLAYMLEDSGAALLLTQRHLL--------------------ERLPLP------AGV 2120
Query: 258 EIVPFKQIVKRGSESGSRYEGSPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK 314
+P R +E + +P ++ A ++YTSGSTG PKGV ++H +++ +
Sbjct: 2121 ARLPLD----RDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQ 2176
Query: 315 AFSDAVHIEPNDVFLGYLPLA 335
A + + P D L ++ +
Sbjct: 2177 AAGERYELSPADCELQFMSFS 2197
Score = 51.9 bits (124), Expect = 7e-07
Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 32/198 (16%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
+ ++N A L G P V + E E ++A A K V +
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
E +A+ + ++ V ++++ L K G++++
Sbjct: 598 ERLAYMLEDSGVQLLLSQSHLGRK--------------------------LPLAAGVQVL 631
Query: 261 PFKQIVKRGSESGSRYEGSPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
+ + E +P T P++ A ++YTSGSTG PKG H + + L
Sbjct: 632 DLDRP---AAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ 688
Query: 318 DAVHIEPNDVFLGYLPLA 335
A + D L P +
Sbjct: 689 QAYGLGVGDTVLQKTPFS 706
Score = 49.6 bits (118), Expect = 3e-06
Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 33/234 (14%)
Query: 102 TRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQ 161
+ RC+ Q++AE P+ V+ D E ++ ++N A L + G
Sbjct: 4545 AGYPATRCV--HQLVAERARMTPDAVA----VVFDEEKLTYAELNRRANRLAHALIARGV 4598
Query: 162 EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL 221
P V I E AE M+ A K V + E +A+ + ++ +++T L
Sbjct: 4599 GPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHL 4658
Query: 222 LPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPP 281
L + L + +++L + D +G + +
Sbjct: 4659 LQR----LPIPDGLASL--------ALDRDEDWEG-----------FPAHDPAV----RL 4691
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
P + A ++YTSGSTG PKGV ++H ++++ L A + + P+D L ++ +
Sbjct: 4692 HPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFS 4745
Score = 44.9 bits (106), Expect = 1e-04
Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 39/246 (15%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ ++N A L G P V + E E ++ A K V + E
Sbjct: 3084 SYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPE 3143
Query: 201 EAIAHGINETEVNIVIT-THDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
E +A+ + ++ ++++ +H LP QG+++
Sbjct: 3144 ERLAYMLEDSGAQLLLSQSHLRLPL-----------------------------AQGVQV 3174
Query: 260 VPFKQIVKRGSESGSRYEGSPP---TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
+ + RG E+ + E +P P++ A ++YTSGSTG PKGV + H + + L
Sbjct: 3175 L----DLDRGDENYA--EANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWM 3228
Query: 317 SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
A + D L + + + L+ G + + P D + ++
Sbjct: 3229 QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGV 3288
Query: 377 SVLHPT 382
VLH
Sbjct: 3289 DVLHAY 3294
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 57.1 bits (138), Expect = 1e-08
Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 31/223 (13%)
Query: 139 WRSFNQVNDEAEAFGKGL--RSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
WR +++D A L R +G R V+I R E++ + A V +
Sbjct: 45 WR---ELDDRVAALAGALSRRGVGFGDR--VLILMLNRTEFVESVLAANMLGAIAVPVNF 99
Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
L IA +++ ++V+T L P + + P +ST++ S+D +
Sbjct: 100 RLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGG---SSDDSVL--- 153
Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDT-----AIIMYTSGSTGTPKGVVLTHDNMIS 311
G E G P D A+IMYTSG+TG PKG VLTH N+
Sbjct: 154 ------------GYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTG 201
Query: 312 TLKAFSDAVHIE-PNDVFLGYLPLAHVFELLSESVCLLCGVAI 353
+ +DV +PL H+ + S LL G
Sbjct: 202 QAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPT 244
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 56.9 bits (138), Expect = 1e-08
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 58/229 (25%)
Query: 138 EWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI- 194
EWR ++ + + A + L LG ++I + E + A A +PV +
Sbjct: 22 EWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVS 81
Query: 195 --YATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTPRVSTLIYMEDQLTSTDTT 251
Y+ L + D K R+I LTP ++ ED
Sbjct: 82 PAYSLL-------------------SKDFA-KLRHIFDLLTPG---AVFAED------GA 112
Query: 252 NFKQGIEIVPFK---QIVKRGSESGSRY--------EGSPP--------TPKDTAIIMYT 292
F + + + + RG+ G + P A ++T
Sbjct: 113 AFARALAALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFT 172
Query: 293 SGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND---VFLGYLPLAHVF 338
SGSTG PK V+ TH M+ +A + V + +LP H F
Sbjct: 173 SGSTGLPKAVINTH-RMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF 220
Score = 32.6 bits (75), Expect = 0.53
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 447 GRVRLILSGGAPLSPDTHELIKVCLCEKVI-------QGYGLTETTSCATVMH--LNDMG 497
R+RL+ GA L D + ++ L + G G TET AT +H + G
Sbjct: 289 KRLRLLFYAGAALPQDVWDRLQA-LAVRTTGERIPMTSGLGATETAPTATFVHWPTDRSG 347
Query: 498 NI 499
I
Sbjct: 348 VI 349
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 56.2 bits (136), Expect = 2e-08
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD-AVHIEPNDVFLGYLPLAHVF 338
PP A + YT G+TG PKG T +M+ T A AV + VFL +LP F
Sbjct: 205 PPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPE---F 261
Query: 339 ELLSESVCLL 348
+ E+ LL
Sbjct: 262 WIAGENFGLL 271
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 55.5 bits (134), Expect = 3e-08
Identities = 51/203 (25%), Positives = 73/203 (35%), Gaps = 55/203 (27%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A I++TSGSTG PKGVV TH + + A I D L P F L
Sbjct: 86 DPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPP---FALF--- 139
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR 404
G A+G +T + +D ++ P AL K+++
Sbjct: 140 -----GPALGVTTVIPAMDPTA--------------PAALDP-------------AKLAQ 167
Query: 405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV--FGQTKKLLGGRVRLILSGGAPLSPD 462
A A F P + K V + + + +R +LS GAP+ PD
Sbjct: 168 AIREIGASCVFG-------------SPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPD 214
Query: 463 THELIKVCLCE--KVIQGYGLTE 483
L ++ YG TE
Sbjct: 215 LLRRFVANLMPEAEIHTPYGATE 237
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 55.4 bits (134), Expect = 4e-08
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
P P D ++YTSG+TG PKGV+ T + +++ + +++ + + +DV L P+AH
Sbjct: 194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAH 249
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 54.2 bits (130), Expect = 1e-07
Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 26/192 (13%)
Query: 159 LGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITT 218
LG P H + F +A VV + GE A++H ++++ ++IT+
Sbjct: 78 LGNTPDHPINFFGALKA------------GARVVHLSPLDGERALSHKLSDSGARLLITS 125
Query: 219 H--DLLPKFRNILKLTPRVSTLIYMEDQ---LTSTDTTNFKQGIEIVPFKQIVKRGSESG 273
LLP L+ + LI ED T IV + VK +
Sbjct: 126 DLAALLPMALKFLE-KGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPA 184
Query: 274 SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS---DAVHIEPNDV--F 328
E TP D A++ YT G+TG PKG +LTH N+ S + + DV
Sbjct: 185 ---EWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERV 241
Query: 329 LGYLPLAHVFEL 340
+ LPL H++ L
Sbjct: 242 ICVLPLFHIYAL 253
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 54.2 bits (131), Expect = 1e-07
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFLGYLPLAH 336
PTP D A + Y+SGST P+GV++TH +++ L+A S D + + P D + +LP H
Sbjct: 171 PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 53.4 bits (129), Expect = 1e-07
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE- 343
D A +YTSG+TG PK +++H + F ++P+DV LPL H L
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGW 141
Query: 344 SVCLLCGVAI 353
S L G ++
Sbjct: 142 SSALAAGASL 151
Score = 42.2 bits (100), Expect = 5e-04
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 136 DYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIY 195
D S+ + N A + LR+LG + V + E R E+++A A K I
Sbjct: 1 DRRL-SYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59
Query: 196 ATLGEEAIAHGINETEVNIVITT 218
T E +AH IN ++ VI
Sbjct: 60 TTQRGEVLAHCINVSDARAVIVD 82
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 53.7 bits (130), Expect = 1e-07
Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 59/233 (25%)
Query: 135 GDYEWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
D WR ++ + + A + L G ++I + E + A A +P
Sbjct: 63 ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYA 122
Query: 193 TI---YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILK-LTPRVSTLIYMEDQLTST 248
+ Y+ + D K R++L+ LTP L++ +D
Sbjct: 123 PVSPAYSLVS-------------------QDFG-KLRHVLELLTP---GLVFADD----- 154
Query: 249 DTTNFKQGIEIVPFKQ---IVKRGSESGSRY------EGSPP-----------TPKDTAI 288
F + + V + RG+ G +PP P A
Sbjct: 155 -GAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAK 213
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHIEPNDVFLGYLPLAHVF 338
++TSGSTG PK V+ TH + + + + + EP V + +LP H F
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEP-PVLVDWLPWNHTF 265
Score = 31.4 bits (72), Expect = 1.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 447 GRVRLILSGGAPLSPDT----HEL-IKVCLCEKV--IQGYGLTETTSCATVMH--LNDMG 497
R++L+ GA LS D + C E++ + G G+TET AT L+ G
Sbjct: 334 SRLKLLFYAGAALSQDVWDRLDRVAEATC-GERIRMMTGLGMTETAPSATFTTGPLSRAG 392
Query: 498 NI 499
NI
Sbjct: 393 NI 394
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 53.6 bits (129), Expect = 1e-07
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 271 ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG 330
E G+ + A + YTSGST P GV +TH N+ + + DA+ + D +
Sbjct: 167 EVGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVS 226
Query: 331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMI 362
+LP H L++ + L G I + +P +
Sbjct: 227 WLPFFHDMGLITVLLPALLGHYITFMSPAAFV 258
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 53.4 bits (129), Expect = 1e-07
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 13/148 (8%)
Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
V + L + IA +N +E ++ + L L L + ++
Sbjct: 82 VPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAED 141
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI-IMYTSGSTGTPKGVVLTHDNMI 310
E ++ ++ G PP + I + YTSG+TG PKGVV TH
Sbjct: 142 -----SEEGDYEDLLAGGDPD---PLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRG-- 191
Query: 311 STLKAFSDAVHIE--PNDVFLGYLPLAH 336
+ L A + + V+L LP+ H
Sbjct: 192 AYLNALGNVIEWGMPDRPVYLWTLPMFH 219
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 53.4 bits (128), Expect = 2e-07
Identities = 53/209 (25%), Positives = 78/209 (37%), Gaps = 52/209 (24%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
D A+IM+T G+TG PK V TH N+ S+++A + P D + +PL H L++
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA-- 234
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI----LDRIYKGVHE 400
LL +A G + L S D + T TAVP I L+R
Sbjct: 235 -ALLATLASGGAVLLPARGRFS--AHTFWDDIKAVGATWYTAVPTIHQILLER------- 284
Query: 401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLS 460
+ P R L R I S APL+
Sbjct: 285 --AATEPSGRK-----------------PAAL-----------------RFIRSCSAPLT 308
Query: 461 PDTHELIKVCLCEKVIQGYGLTETTSCAT 489
+T + ++ V+ +G+TE T T
Sbjct: 309 AETAQALQTEFAAPVVCAFGMTEATHQVT 337
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 53.7 bits (129), Expect = 2e-07
Identities = 88/408 (21%), Positives = 146/408 (35%), Gaps = 66/408 (16%)
Query: 89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
GV ++ ++ VTR S RCLG + G+ EW ++ V+
Sbjct: 425 GVRSLGEMWERSVTRHSTFRCLG------------------QTSESGESEWLTYGTVDAR 466
Query: 149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
A G GL +LG P + + E +I AC + + + I+
Sbjct: 467 ARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLID 524
Query: 209 ETEVNIVITTHDLLPKFRNILK--LTPR---VSTLIYMEDQLTSTDTTNFKQ-GIEIVPF 262
E ++ +V RN + LT R + T++Y D + I ++P+
Sbjct: 525 EHKIKVVFAD-------RNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPY 577
Query: 263 KQIVKRGSESGSRYEGSPPTP--KDTAIIMYTSGSTGTPKG-----VVLTHDNM---IST 312
+ + ++G R P + Y +T + G V +TH ++ IST
Sbjct: 578 EFVEQKG-----RLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDIST 632
Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
L + + + P A +F V +L A G + + +D + +
Sbjct: 633 LVMTGVLPSSFKKHLMVHFTPFAMLF----NRVFVLGLFAHGSA--VATVDAAHLQRAFV 686
Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR-CP 431
K PT L A P + + R S LF AF+ + + R
Sbjct: 687 K-----FQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSS 741
Query: 432 LIDKVVFGQTKKLLGGRVRLIL--SGGAPLSPDTHELIKVC----LCE 473
L+ + F T++LLGG V I+ S E I VC L E
Sbjct: 742 LLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVCYVPCLRE 789
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 53.6 bits (129), Expect = 2e-07
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 278 GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
P++ A ++YTSGSTG PKG H +++ L A +A + DV L + A
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFA 1769
Score = 45.9 bits (109), Expect = 5e-05
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
P + A ++YTSGSTG PKGV ++H + + + ++ + + +D L A
Sbjct: 655 PDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFA 707
Score = 43.2 bits (102), Expect = 3e-04
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
++ A ++YTSGSTG PKGV + H + + L ++A ++ ND L ++ + F+
Sbjct: 3236 GENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFS--FDGAQ 3293
Query: 343 ESV--CLLCG 350
E L+CG
Sbjct: 3294 ERFLWTLICG 3303
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 52.8 bits (127), Expect = 2e-07
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 191 VVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL--KLTPRVSTLIYMEDQLTST 248
+V I A L E A + ++ ++++T+ P +R I TP +
Sbjct: 89 MVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADD 148
Query: 249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDN 308
++F Q + + + P + DTA I++TSG+T PKGVV+TH N
Sbjct: 149 GVSSFTQ-----------LKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYN 197
Query: 309 MISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
+ + + +DV+L +P H+
Sbjct: 198 LRFAGYYSAWQCALRDDDVYLTVMPAFHI 226
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 52.7 bits (127), Expect = 3e-07
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFLGYLPLAHVFEL 340
D A +YTSG+TG PKGV+ H + ++ +AF+ + + ++P D L + L
Sbjct: 90 ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGL 148
Score = 28.5 bits (64), Expect = 9.8
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ +++D A F LR+LG P V++ E + A AC K V + L
Sbjct: 12 TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71
Query: 201 EAIAHGINETEVNIVITTHD 220
+ + H ++++ +++T D
Sbjct: 72 QDLEHILDDSGAALLVTEAD 91
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 52.5 bits (127), Expect = 3e-07
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ ++ E F L+SLG + V I+ E IA AC + ++A
Sbjct: 80 TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSA 139
Query: 201 EAIAHGINETEVNIVITTH---------DLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
EA+A IN+ + ++IT L L+ P V +I ++ +
Sbjct: 140 EALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVK---RTGGEV 196
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP---KDTAIIMYTSGSTGTPKGVV----- 303
+G + V + ++ + S P P +D I+YTSGSTG PKGVV
Sbjct: 197 PMVEGRD-VWWHDLMAKASPY------CEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGG 249
Query: 304 -LTHDNMISTLKAFSDAVHIEPNDVF 328
L + T K D I P+DV+
Sbjct: 250 YLVYAAT--TFKYVFD---IHPDDVY 270
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 52.1 bits (125), Expect = 4e-07
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
T+ L E IA IN E +VIT +P I P V + + D TT
Sbjct: 93 TVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTT- 151
Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTH-DNMI 310
K V +++ + ++ ++ ++TA M YTSG+TG PKGV+ +H N++
Sbjct: 152 LKNA---VAYEEWIA-EADGDFAWKT---FDENTAAGMCYTSGTTGDPKGVLYSHRSNVL 204
Query: 311 STLKAFS-DAVHIEPNDVFLGYLPLAH 336
L A + DA+ D L +PL H
Sbjct: 205 HALMANNGDALGTSAADTMLPVVPLFH 231
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 52.0 bits (125), Expect = 5e-07
Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 15/205 (7%)
Query: 141 SFNQVNDEAEAFGKGLRS-LGQEPRHNVVIF--AETRAEWMIAAQACFKQNIPVVTIYAT 197
++ +V+ + + L + G +P V + E W+ A K P +
Sbjct: 5 TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLA--KLGCPTAFLNTN 62
Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTPRVSTLIYMEDQLTSTDTTNFKQG 256
+ ++ H +++ +LL IL L + Y+ +
Sbjct: 63 IRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTSPPEGVISLLAK 122
Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
++ E S + + TA+ +YTSG+TG PK ++H ++
Sbjct: 123 VDAAS--------DEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGML 174
Query: 317 SDAVHIEPNDVFLGYLPLAHVFELL 341
S + +DV LPL H L
Sbjct: 175 S-LCGVTADDVVYTTLPLYHSSGAL 198
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 51.7 bits (124), Expect = 6e-07
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI--------- 310
VPFKQ +++G G + P D A++ YT G+TG KG +LTH N++
Sbjct: 185 VPFKQALRQGR--GLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRAC 242
Query: 311 -STLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLL 348
S L + E +V + LPL H++ + +C++
Sbjct: 243 LSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM 281
Score = 29.0 bits (65), Expect = 6.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 442 KKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
K L ++L SGG L T E + +++GYGLTET+ A+
Sbjct: 328 KDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVAS 375
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 51.6 bits (123), Expect = 7e-07
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 18/214 (8%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
+F+ +D+ + F L+ LG E V I + +I VV E
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLT--------------PRVSTLIYMEDQLT 246
+ + ++++ +++ + P+ N+ T P L+Y Q
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKK 170
Query: 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
++ E + V++ +G P D A++ YT G+TG PKGV+LTH
Sbjct: 171 QSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPEN--DLALLQYTGGTTGFPKGVMLTH 228
Query: 307 DNMIS-TLKAFSDAVH-IEPNDVFLGYLPLAHVF 338
N++S TL + E +V LG LP HV+
Sbjct: 229 KNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 51.6 bits (124), Expect = 8e-07
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL 329
P TA I++TSGSTG PKGV++ +++ L + + +DV L
Sbjct: 593 QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVL 643
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 51.4 bits (123), Expect = 8e-07
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI-----EPNDVFLGYLPLAHV 337
P D A + YT G+TG KG +LTH N+++ ++ + E +V + LPL H+
Sbjct: 207 PDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHI 266
Query: 338 FELLSESVCLL 348
F L + + +
Sbjct: 267 FALTANGLVFM 277
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 50.9 bits (122), Expect = 9e-07
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 39/157 (24%)
Query: 196 ATLGEEAIAHGINETEVNIVITTH--DLLPKFRNIL---------KLTPRVSTLIYMEDQ 244
A L E+ + T V VI T D+LP + +L K+ P
Sbjct: 133 AHLAEKVLPK----TGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL------- 181
Query: 245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVL 304
+ V F + +G+ G + P D A++ YT G+TG KG +L
Sbjct: 182 ------------PQAVKFNDALAKGA--GQPVTEANPQADDVAVLQYTGGTTGVAKGAML 227
Query: 305 THDNMISTL---KAFSDAVHIEPNDVFLGYLPLAHVF 338
TH N+++ + +A + E ++ + LPL H++
Sbjct: 228 THRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIY 264
Score = 36.7 bits (85), Expect = 0.027
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 442 KKLLGGRVRLILSGGAPLSPDTHELIK-VCLCEKVIQGYGLTETTSCATVMHLNDMGNI 499
+KL ++L LSGG L T E K V C + +GYG+TET+ +V N I
Sbjct: 321 RKLDFSALKLTLSGGMALQLATAERWKEVTGCA-ICEGYGMTETSPVVSV---NPSQAI 375
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 51.7 bits (124), Expect = 9e-07
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMIST--LKAFSDAVHIEPNDVFLGYLPLAH 336
P D A + YTSGST PKGV ++H N+++ L + + P+DV + +LPL H
Sbjct: 165 PDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYH 220
Score = 45.9 bits (109), Expect = 5e-05
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 276 YEGSPPT----PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY 331
Y +P P+ A ++YTSGSTG PKGVV++H + +A + + +D L +
Sbjct: 2321 YSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHF 2380
Query: 332 LPLAHVFELLSES--VCLLCG 350
+ F+ SE V LLCG
Sbjct: 2381 YSIN--FDAASERLLVPLLCG 2399
Score = 42.1 bits (99), Expect = 9e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 287 AIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
A ++YTSGSTG PKGV TH + L+ ++ +DV + P++
Sbjct: 1276 AYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPIS 1324
Score = 38.6 bits (90), Expect = 0.008
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMI 310
P + A ++YTSGSTG PKGV++ M+
Sbjct: 3867 GPDNLAYVIYTSGSTGLPKGVMVEQRGML 3895
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 50.7 bits (122), Expect = 1e-06
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 79/216 (36%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH--IEPNDVFLGYLPLAHV--FEL 340
+ A IMYTSG+TG PKGV+ T+ N + A A++ + +D +L +P+ H+ +
Sbjct: 142 EVATIMYTSGTTGKPKGVIQTYGNHWWS--AVGSALNLGLTEDDCWLAAVPIFHISGLSI 199
Query: 341 LSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP-------TALTAVPLILDR 393
L SV Y + +++ K DA ++ T ++ V +L R
Sbjct: 200 LMRSVI--------YGMRVVLVE---------KFDAEKINKLLQTGGVTIISVVSTMLQR 242
Query: 394 IYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLIL 453
+ + + E +S FRC +L
Sbjct: 243 LLERLGEGTYPSS---------------------FRC---------------------ML 260
Query: 454 SGGAPLSPDTHELIKVCLCEK---VIQGYGLTETTS 486
GG P E K EK V Q YG+TET S
Sbjct: 261 LGGGPAPKPLLEQCK----EKGIPVYQSYGMTETAS 292
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 50.6 bits (121), Expect = 1e-06
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFEL 340
D A+I +TSG+TG PKG + H ++++ AF V P+DVF+G PLA F L
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 50.4 bits (121), Expect = 1e-06
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI--EPNDVF 328
D AI++YTSG+TG PKG + H ++ L + P DVF
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVF 134
Score = 46.2 bits (110), Expect = 3e-05
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
G E +F Q+ D + LR LG E V ++ E IA A +K V +
Sbjct: 2 GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61
Query: 195 YATLGEEAIAHGINETEVNIVIT 217
G +A+ H + ++ +++T
Sbjct: 62 SVLFGPDAVEHRLRDSGARVLVT 84
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 50.2 bits (120), Expect = 2e-06
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 279 SPPTPKD-TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
+P P + ++I++TSG++G PKGV+L+ N+ T F ++ + FL P+ H+
Sbjct: 129 TPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHI 188
Query: 338 FELLS 342
L++
Sbjct: 189 IGLIT 193
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 50.2 bits (120), Expect = 2e-06
Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 27/234 (11%)
Query: 115 ILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR 174
IL ++ + P+ I + G+ +W S+ +++ A+ GL LG + V+
Sbjct: 28 ILRDQAARYPD-AI--AIICGNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNI 83
Query: 175 AEWMIAAQACFKQNI-PVVTIYATLGEE--AIAHGINETEVNIVITTHDLLPK---FRNI 228
AE+ I A K + PV+ +++ E A A I E + I+ H L R +
Sbjct: 84 AEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQI-EPALYIIDRAHSLFDYDDFARQL 142
Query: 229 LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI 288
P + +I + + E V F P + A
Sbjct: 143 QSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKF----------------PPTKSDEVAF 186
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
+ GSTGTPK + TH++ +++ + + +L LP AH + L S
Sbjct: 187 FQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSS 240
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 49.9 bits (119), Expect = 2e-06
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 269 GSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH------I 322
E + II YTSG+TG PKG VLT +NM F +A++ +
Sbjct: 134 EIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENM------FWNALNNTFAIDL 187
Query: 323 EPNDVFLGYLPLAHV 337
+D + LPL H+
Sbjct: 188 TMHDRSIVLLPLFHI 202
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 49.8 bits (119), Expect = 2e-06
Identities = 69/306 (22%), Positives = 119/306 (38%), Gaps = 71/306 (23%)
Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
L + I H IN E +++ L + ILK P V ++++ + + +GI
Sbjct: 98 LMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGI 157
Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAI-IMYTSGSTGTPKGVVLTHDNMISTLKAF 316
++ ++ ++ + Y+ P + TA I Y++G+TG PKGVV +H ++ L++
Sbjct: 158 KVYSYEALL---DGRSTVYDW-PELDETTAAAICYSTGTTGAPKGVVYSHRSLY--LQSL 211
Query: 317 S----DAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
S D++ + + FL +P+ HV LS V L A TPL
Sbjct: 212 SLRTTDSLAVTHGESFLCCVPIYHV---LSWGVPL---AAFMSGTPLVF----------P 255
Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAF-EYKRKWAKRGFRCP 431
D S L +I +V+ P L+ Y + +R
Sbjct: 256 GPDLSAPT----------LAKIIATAMPRVAHGVP---TLWIQLMVHYLKNPPER----- 297
Query: 432 LIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK-----VIQGYGLTETTS 486
++ I GG+ + P LIK E+ V+ +G+TET+
Sbjct: 298 ---------------MSLQEIYVGGSAVPP---ILIK--AWEERYGVDVVHVWGMTETSP 337
Query: 487 CATVMH 492
TV
Sbjct: 338 VGTVAR 343
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 48.8 bits (117), Expect = 4e-06
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
P D A ++YTSGSTG PKGV + H N + L
Sbjct: 103 DPDDLAYVIYTSGSTGRPKGVAIEHRNAAALL 134
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 48.9 bits (117), Expect = 4e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL---KAFSDAVHIEPNDVFLGYLPLAHVF 338
P+D A + YT G+TG KG +LTH NM++ L KA + ++ + LPL H+F
Sbjct: 204 VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIF 263
Query: 339 ELLSESV-CLL 348
L +V CLL
Sbjct: 264 AL---TVNCLL 271
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 48.6 bits (116), Expect = 6e-06
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 273 GSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYL 332
G P + A + G+TGTPK + TH++ +++A ++ + V+L L
Sbjct: 178 GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCAL 237
Query: 333 PLAHVFELLSESV--CLLCG 350
P AH F L S L G
Sbjct: 238 PAAHNFPLSSPGALGVFLAG 257
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 48.0 bits (115), Expect = 8e-06
Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 14/182 (7%)
Query: 140 RSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLG 199
++ ++++++ A +GL +LG V + A +++A A K ++ +
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFS 134
Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
+A V ++ + + R+ D + +T
Sbjct: 135 GPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGST-------D 187
Query: 260 VPFKQIVKRGSESGSRYEGSPPTP-KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD 318
++ S + P P K I++ TSG+TGTPKG + ++ L
Sbjct: 188 ETLDDLIAGSSTA------PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLS 241
Query: 319 AV 320
V
Sbjct: 242 RV 243
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 47.9 bits (115), Expect = 8e-06
Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 33/216 (15%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
Q+L + P+ R Y W ++ + N+E +A KGL +LG E V I+A
Sbjct: 20 QLLDRTAARYPD-REALVYRDQGLRW-TYREFNEEVDALAKGLLALGIEKGDRVGIWAPN 77
Query: 174 RAEWMIAAQACFKQNIPVVTI----------YA--TLGEEAIAHGINETEVNIVITTHDL 221
EW++ A K +VTI YA G +A+ + + V ++L
Sbjct: 78 VPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYEL 137
Query: 222 LPKFRNI------LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSE-SGS 274
P+ P + +I++ D+ ++ F +++ G +
Sbjct: 138 APELATCEPGQLQSARLPELRRVIFLGDEKHPG----------MLNFDELLALGRAVDDA 187
Query: 275 RYEGSPPT--PKDTAIIMYTSGSTGTPKGVVLTHDN 308
T P D I YTSG+TG PKG LTH N
Sbjct: 188 ELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRN 223
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 48.0 bits (115), Expect = 9e-06
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 271 ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK-----AFSDAVHIEPN 325
+S + P TA + YTSGST TP GV+++H N+I+ + F D + P
Sbjct: 147 DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPP 206
Query: 326 D-VFLGYLPLAH 336
D + +LP H
Sbjct: 207 DTTVVSWLPFYH 218
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 47.5 bits (113), Expect = 1e-05
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 256 GIEIVPFKQIVKRGS--ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDN----- 308
G+ ++ +V G +G E P P+ A + YTSG+TG PKG V+
Sbjct: 122 GVRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV 181
Query: 309 -MISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
+ST H +V LG +PL HV
Sbjct: 182 LFMSTQAGLRHGRH----NVVLGLMPLYHV 207
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 47.6 bits (114), Expect = 1e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMIS 311
D I++TSG+TG PKGV ++HDN++S
Sbjct: 144 DNYYIIFTSGTTGKPKGVQISHDNLVS 170
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 47.3 bits (113), Expect = 2e-05
Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 58/233 (24%)
Query: 135 GDYEWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
G +WR ++ + +A + L LG +P V+I + E + A + +P
Sbjct: 74 GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAA 133
Query: 193 TI---YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKL-TPRVSTLIYMEDQLTST 248
+ Y+ + +HD K +++ L PRV ++ +
Sbjct: 134 PVSPAYSLM-------------------SHDHA-KLKHLFDLVKPRV---VFAQSGAP-- 168
Query: 249 DTTNFKQGIEIVPFK--QIVKRGS----ESGSRYE---GSPPT-----------PKDTAI 288
F + + + +V + + +PPT P A
Sbjct: 169 ----FARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAAVAAAIAAITPDTVAK 224
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND---VFLGYLPLAHVF 338
++TSGSTG PK V+ T M + + EP+ V L ++P H
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTM 277
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 46.7 bits (111), Expect = 2e-05
Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 46/202 (22%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
D MYTSG+TG PKGV + + + + A+ + +DVF +
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIADPGWAY---- 142
Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402
G+ + PL M G +V TA D + +
Sbjct: 143 -------GLYYAITGPLAM------------GITTVFLEGGFTA-ENTYDVLER------ 176
Query: 403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPD 462
FA + R G K ++R+ S G PL+P+
Sbjct: 177 -----LGVTNFAGSPTAYRMLMAAGADAAARIK-----------LKLRVASSAGEPLNPE 220
Query: 463 THELIKVCLCEKVIQGYGLTET 484
+ L + YG TET
Sbjct: 221 VVRWFQANLGVTIHDHYGQTET 242
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 46.7 bits (111), Expect = 2e-05
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
P D A ++YTSG+TG PKG ++ + T S ++++ D +PL H
Sbjct: 85 DPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYH 139
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 46.6 bits (111), Expect = 2e-05
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF 328
P+D A++ +TSG+TG PKGV+ H +++ + + P+DV+
Sbjct: 87 DPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133
Score = 40.9 bits (96), Expect = 0.001
Identities = 19/84 (22%), Positives = 33/84 (39%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ ++ + + F L SLG V E +AA K +++ G
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 201 EAIAHGINETEVNIVITTHDLLPK 224
E I + E ++ITT +L +
Sbjct: 62 EPIRDRLELGEAKVLITTPELYER 85
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 46.3 bits (110), Expect = 2e-05
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP-NDVFLGYLPLAH 336
+PP A++ T+GSTGTP+ +L+ ++S L+ + V ++ DV +LPL H
Sbjct: 147 TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYH 205
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 46.2 bits (110), Expect = 3e-05
Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 28/217 (12%)
Query: 141 SFNQVNDEAEAFGKGLRSL--GQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATL 198
S+ + + A LR+ P H V + + E+ + A I V + T
Sbjct: 30 SWREHIRGSAARAAALRARLDPTRPPH-VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTR 88
Query: 199 GEEAIAHGINETEVNIVITTHDLLPKFRNILK-LTPRVSTLIYMEDQLTSTDTTNFKQGI 257
A+A I + +V+T +L L P V + + D+ +
Sbjct: 89 RGAALARDIAHADCQLVLTE----SAHAELLDGLDPGVRVI--------NVDSPAWAD-- 134
Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
E+ + + P D ++++TSG++G PK V TH + S +
Sbjct: 135 ELAAHR---------DAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA 185
Query: 318 DAVHIEPNDVFLGYLPLAHVFELLSE-SVCLLCGVAI 353
+ P+DV +PL H +++ +V L G +I
Sbjct: 186 QRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI 222
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 46.3 bits (110), Expect = 3e-05
Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 56/202 (27%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE----WMIAAQACFKQNIPVVT--I 194
+F ++N+ + ++ G V +F E R E W+ A+ I V T I
Sbjct: 5 TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAK------IGVETALI 58
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254
+ L E++ H I ++ +I L P ++ + S D NF+
Sbjct: 59 NSNLRLESLLHCITVSKAKALIFNL-----------LDPLLTQ---SSTEPPSQDDVNFR 104
Query: 255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK 314
D +YTSG+TG PK V+ H
Sbjct: 105 ------------------------------DKLFYIYTSGTTGLPKAAVIVHSRYYRIAA 134
Query: 315 AFSDAVHIEPNDVFLGYLPLAH 336
A + P DV LPL H
Sbjct: 135 GAYYAFGMRPEDVVYDCLPLYH 156
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 45.5 bits (108), Expect = 5e-05
Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ Q+ ++++ ++ + ++++ ++A K + + ++
Sbjct: 27 TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPS 86
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
E I I +VI T +L +I + ++ TL +E TS +F ++
Sbjct: 87 ERIEMIIEAAGPELVIHTAEL-----SIDAVGTQIITLSALEQAETSGGPVSFDHAVK-- 139
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
D I+YTSGSTG PKGV ++HDN++S
Sbjct: 140 ----------------------GDDNYYIIYTSGSTGNPKGVQISHDNLVS 168
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 45.4 bits (108), Expect = 5e-05
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI 322
K I R +G+R + D A++ +TSG+TG PK V+ TH + L + + +
Sbjct: 62 KDIRYRLERAGAR--AIVTSADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDL 119
Query: 323 EPNDVF 328
P+D+
Sbjct: 120 RPDDLH 125
Score = 33.9 bits (78), Expect = 0.19
Identities = 14/81 (17%), Positives = 29/81 (35%)
Query: 140 RSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLG 199
+F ++ +E++ L+ LG V + E C K + LG
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 200 EEAIAHGINETEVNIVITTHD 220
+ I + + ++T+ D
Sbjct: 61 PKDIRYRLERAGARAIVTSAD 81
Score = 30.0 bits (68), Expect = 2.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 447 GRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
+R ++S G PL+P+ + + + GYG TET V + M
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTET--GLLVANFPGM 244
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 45.5 bits (108), Expect = 5e-05
Identities = 58/283 (20%), Positives = 98/283 (34%), Gaps = 48/283 (16%)
Query: 134 MGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVT 193
+G WR ++++ ++A L++L V I ++ A A + ++
Sbjct: 66 LGTLTWR---ELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILL 122
Query: 194 IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP---RVSTLIYMEDQLTSTDT 250
+ + A+A + V+ VI + L P R+ + LT
Sbjct: 123 LNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVL 182
Query: 251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI 310
G PT + +I+ TSG+TGTPKG + I
Sbjct: 183 IAAHAGQRP--------------------EPTGRKGRVILLTSGTTGTPKGARRSGPGGI 222
Query: 311 STLKAFSDAVHIEPNDVFLGYLPLAHV--FELLSESVCLLCGVAIGYSTPLTMIDTSSKI 368
TLKA D + + P+ H F L + L C T++
Sbjct: 223 GTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLAC----------TIV-----T 267
Query: 369 KRGTKGDASV-----LHPTALTAVPLILDRIYKGVHEKVSRAS 406
+R +A++ T L VP++ DRI E +R S
Sbjct: 268 RRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYS 310
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 45.3 bits (107), Expect = 6e-05
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 39/198 (19%)
Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
L+ +G + VVI+ E IA AC + ++A E++A I + + +V
Sbjct: 137 LKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVV 196
Query: 216 ITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSR 275
IT N +K P+ I ++D + + + K G+ + + ++ +
Sbjct: 197 ITC--------NAVKRGPKT---INLKDIVDAALDESAKNGVSV---GICLTYENQLAMK 242
Query: 276 YEGSP----------------PT--------PKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
E + PT +D ++YTSGSTG PKGV+ T M+
Sbjct: 243 REDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 302
Query: 311 STLKAFSDAVHIEPNDVF 328
T F A +P DV+
Sbjct: 303 YTATTFKYAFDYKPTDVY 320
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 44.2 bits (105), Expect = 1e-04
Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 32/205 (15%)
Query: 136 DYEWRSFNQVNDEAEAFGKGLRSL--GQEPRHNVVIFAETRA--EWMIAAQACFKQNIPV 191
+ WR +V EA A L +L P H V+ T W+ AA +
Sbjct: 26 TWTWR---EVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALG---GYVL 79
Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
V + T A+A I + +++T + P L L ++ DT
Sbjct: 80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDG-LDLP---------GVRVLDVDTP 129
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
+ + + G+ + R D ++++TSG+TG PK V +H +
Sbjct: 130 AYAELVA--------AAGALTPHR----EVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAF 177
Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAH 336
+A ++ + +DV +PL H
Sbjct: 178 AGRALTERFGLTRDDVCYVSMPLFH 202
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 43.7 bits (104), Expect = 2e-04
Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 41/221 (18%)
Query: 132 YVM-GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIP 190
+M E ++ ++ + GLR+LG V I E E+ A + +
Sbjct: 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY 62
Query: 191 VVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT 250
I L IA+ ++++ ++I + L + P L+ +
Sbjct: 63 YTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVA------- 115
Query: 251 TNFKQGIEIVPFKQIVKRGSESGSR-YE----GSPPTPKDT----AIIMYTSGSTGTPKG 301
G G R YE P TP A ++Y+SG+TG PKG
Sbjct: 116 ------------------GPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKG 157
Query: 302 VV--LTH----DNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
+ L + L ++ P+ V+L PL H
Sbjct: 158 IKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYH 198
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 42.8 bits (101), Expect = 4e-04
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 28/190 (14%)
Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
RSLG + +V IF E ++ A + + + + L A+ ++++ +
Sbjct: 41 FRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARAL 100
Query: 216 ITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSR 275
IT+ L R +LK P V + D + V + + V
Sbjct: 101 ITSAAKLDVARALLKQCPGV-RHRLVLDGDGELE--------GFVGYAEAVA-------- 143
Query: 276 YEGSPPTPKDT----AIIMYTSGSTGTPKGVV--LTHDNMISTLKAFS---DAVHIEPND 326
G P TP ++Y+SG+TG PKG+ L + L + +
Sbjct: 144 --GLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDM 201
Query: 327 VFLGYLPLAH 336
V+L PL H
Sbjct: 202 VYLSPAPLYH 211
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 42.3 bits (100), Expect = 4e-04
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH 321
P D A+++ TSG+TGTPKG +LT + ++ +DA H
Sbjct: 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTAS----ADATH 68
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 42.4 bits (101), Expect = 5e-04
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 11/46 (23%)
Query: 289 IMYTSGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
I+YTSGSTG PKGV+ L + M T+K D + DV+
Sbjct: 250 ILYTSGSTGKPKGVLHTTGGYLVYAAM--TMKYVFD---YKDGDVY 290
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 42.0 bits (99), Expect = 5e-04
Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 20/144 (13%)
Query: 278 GSPPTPKDTAIIMYT-SGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
G D +++T SG+T PK V+ ++ +A + A +P V L LP
Sbjct: 174 GERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCG 233
Query: 337 VFELLSESVCLLCGVAIGYSTPLTMI---DTSSKIKRGTKGDASVLHPTALTAVPLILDR 393
VF + LL +A G PL D + + V H D
Sbjct: 234 VFGFST----LLGALAGG--APLVCEPVFDAARTARA--LRRHRVTHTFG-------NDE 278
Query: 394 IYKGVHEKVSRASPFKRA-LFAFA 416
+ + + + + F A LF FA
Sbjct: 279 MLRRILDTAGERADFPSARLFGFA 302
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 41.8 bits (99), Expect = 8e-04
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 128 IFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQ 187
I++ G+ ++ +++ E F L+SLG + V I+ E IA AC
Sbjct: 77 IWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC--A 134
Query: 188 NIPVVT--IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPR-V 235
I + ++ EA+A IN+ +VIT + L + I L+ P V
Sbjct: 135 RIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSV 194
Query: 236 STLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP---KDTAIIMYT 292
++ + + T + +G + V + ++ + S P P +D I+YT
Sbjct: 195 EHVLVV--RRTGNPV-PWVEGRD-VWWHDLMAKASAY------CEPEPMDSEDPLFILYT 244
Query: 293 SGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
SGSTG PKGV+ L + M T+K D I+ D+F
Sbjct: 245 SGSTGKPKGVLHTTGGYLLYAAM--TMKYVFD---IKDGDIF 281
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 291 YTSGSTGTPKGVVLTHDNMISTLKAFS----DAVHIEPNDVFLGYLPLAHV 337
YTSG+TG PKG + +H + + L A+ DA+ + D L +P+ HV
Sbjct: 183 YTSGTTGNPKGALYSHRS--TVLHAYGAALPDAMGLSARDAVLPVVPMFHV 231
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 41.0 bits (96), Expect = 0.001
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 50/217 (23%)
Query: 245 LTSTDTTNFKQGIEIV---------PFKQIVKRGS-------ESGS-RYEGSPPTPKDTA 287
L ++FK + IV + + +G+ E+G + PP + +
Sbjct: 138 LAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQS 197
Query: 288 IIM-YTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND--VFLGYLPLAHVFELLSES 344
I + YTSG+T +PKGVVL H + L A S+A+ N+ V+L LP+ H
Sbjct: 198 IALGYTSGTTASPKGVVLHHRG--AYLMALSNALIWGMNEGAVYLWTLPMFHC-----NG 250
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG------- 397
C +A T + + ++K + V H A P++L+ I
Sbjct: 251 WCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTH---FCAAPVVLNTIVNAPKSETIL 307
Query: 398 -----VHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
VH + A+P LFA +++GFR
Sbjct: 308 PLPRVVHVMTAGAAPPPSVLFAM--------SEKGFR 336
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 41.1 bits (97), Expect = 0.001
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 281 PTPKD-TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFE 339
P+P D A + GSTGTPK + TH++ +++ + P +L LP AH +
Sbjct: 178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYP 237
Query: 340 LLS 342
+ S
Sbjct: 238 MSS 240
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 40.7 bits (96), Expect = 0.002
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 276 YEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTHDNMISTLKAFSDAVH--IEPNDVFLGYL 332
+ + P + AI + YTSG+TG PKGVV H + L A S+ + + + V+L L
Sbjct: 173 FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRG--AYLNALSNILAWGMPKHPVYLWTL 230
Query: 333 PLAH 336
P+ H
Sbjct: 231 PMFH 234
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 40.2 bits (95), Expect = 0.002
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 287 AIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
A + TSGSTG PK V T +++ + + D +L LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHV 188
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 39.9 bits (93), Expect = 0.002
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 277 EGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD--AVHIEPNDVFLGYLPL 334
+ P D +MYTSG+T PKGV+ ++ N+ K+ A+ + ++ L PL
Sbjct: 142 PQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNL--HWKSIDHVIALGLTASERLLVVGPL 199
Query: 335 AHVFELLSESVCLLCGVAI 353
HV L G+A+
Sbjct: 200 YHV------GAFDLPGIAV 212
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 40.0 bits (93), Expect = 0.003
Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ +V + F K LRSLG VV+ AE+ I A T E
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
I +++T K + + + ++ E+++ V
Sbjct: 117 SEIKKQAEAAGAKLIVTNDTNYGKVKGL-----GLPVIVLGEEKIEGA-----------V 160
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL--KAFSD 318
+K++++ +G + D + ++SG+TG KGV+LTH N+++ L FS
Sbjct: 161 NWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV 220
Query: 319 AVHIEPNDVFLGYLPLAHVF 338
+ V LG +P H++
Sbjct: 221 GPEMIGQVVTLGLIPFFHIY 240
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 40.0 bits (94), Expect = 0.003
Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 17/206 (8%)
Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE-WMIAAQACFKQNIPV 191
V+GD ++ Q+ D + + +LG V + + R E M A +
Sbjct: 32 VLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQL-AGLRR 89
Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
++ + A+ + + ++ +I D P L L RV +L ++ D
Sbjct: 90 TALHPLGSLDDHAYVLEDAGISTLIV--DPAPFVERALALLARVPSLKHVLTLGPVPDGV 147
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
+ +V + P D A + YT G+TG PKGV+ TH ++ +
Sbjct: 148 DLLAAAAKFGPAPLV------------AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195
Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAHV 337
+ + FL PL+H
Sbjct: 196 MAQIQLAEWEWPADPRFLMCTPLSHA 221
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 39.5 bits (93), Expect = 0.004
Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 30/209 (14%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT--- 197
S+ ++ + LR LG +P V + E +IA A +I A
Sbjct: 88 SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLAT-------ASIGAIWSS 140
Query: 198 ----LGEEAIAHGINETEVNIVIT---------THDLLPKFRNILKLTPRVSTLIYMEDQ 244
G EA+ + E ++ HD K I+K P + ++ +
Sbjct: 141 CSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYL 200
Query: 245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP-KDTAIIMYTSGSTGTPKGVV 303
+ K + + + + +E P I+Y+SG+TG PK +V
Sbjct: 201 SSDAQPAALKFSALTLLW--SLAGDRAAPLEFE---RLPFDHPLWILYSSGTTGLPKCIV 255
Query: 304 LTHDNMIST-LKAFSDAVHIEPNDVFLGY 331
+ LK + P D Y
Sbjct: 256 HGAGGTLLQHLKEHGLHCDLRPGDRLFYY 284
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 39.3 bits (92), Expect = 0.004
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 291 YTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI-------EPNDVFLGYLPLAHVFELLSE 343
+TSG+TG PK VLTH M AF H+ D L PL+H
Sbjct: 170 FTSGTTGRPKAAVLTHGQM-----AFVITNHLADLMPGTTEQDASLVVAPLSH-----GA 219
Query: 344 SVCLLCGVAIGYSTPLT 360
+ LC VA G +T L
Sbjct: 220 GIHQLCQVARGAATVLL 236
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 38.8 bits (91), Expect = 0.007
Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 46/187 (24%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFK-------------- 186
++ ++ DE LR LG V+I+ E +IA AC +
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134
Query: 187 ----QNI----PVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKL--TPRVS 236
I P + + A+ G E V+ LL K L+L
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEP----------GRVVPYKPLLDK---ALELSQHKPHK 181
Query: 237 TLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGST 296
LI Q+ K G + + + +++ + + P D I+YTSG+T
Sbjct: 182 VLILNRGQVP----APLKPGRD-LDWAELMAKAR----PVDCVPVESTDPLYILYTSGTT 232
Query: 297 GTPKGVV 303
G PKGVV
Sbjct: 233 GKPKGVV 239
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 38.3 bits (89), Expect = 0.009
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ Q++ E F LR+LG V+I+ AE + A AC + ++
Sbjct: 85 TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI--- 257
++A I++ ++++ D + ++ P + I E Q +G+
Sbjct: 145 HSLALRIDDATPKLIVSA-DAGMRGGKVIPYKPLLDAAI-AEAQHPPPHVLLVDRGLAPM 202
Query: 258 EIVPFKQI---VKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGV 302
++P + + R ++ + + I+YTSG+TG PKGV
Sbjct: 203 RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGV 250
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 38.2 bits (89), Expect = 0.010
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 37/161 (22%)
Query: 271 ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFL 329
+G + D + + YTSGST P GV +TH + + L ++ ++ N +
Sbjct: 180 SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGV 239
Query: 330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPL 389
+LPL H L + G G+ST ++ PTA
Sbjct: 240 SWLPLYHDMGLSMIGFPAVYG---GHST--------------------LMSPTAF----- 271
Query: 390 ILDRIYKGVHEKVSRASPFKRALFA---FAFEYKRKWAKRG 427
+ R + + +S S R + A FA+E+ A+RG
Sbjct: 272 -VRRPQRWIKA-LSEGSRTGRVVTAAPNFAYEWA---AQRG 307
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 36.5 bits (84), Expect = 0.036
Identities = 38/161 (23%), Positives = 56/161 (34%), Gaps = 34/161 (21%)
Query: 194 IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNF 253
I L +IA + + I+ P R +L L ++ +N
Sbjct: 94 INTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLS--------------SEDSNL 139
Query: 254 KQGIEIVPFKQIVKRGSESGSRYEG----SPPTPK------------DTAIIMYTSGSTG 297
+ + KR S YE PTP D + YTSG+T
Sbjct: 140 NLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTA 199
Query: 298 TPKGVVLTHDNMISTLKAFSDAVHIEPN--DVFLGYLPLAH 336
PKGVV++H + L S + E V+L LP+ H
Sbjct: 200 DPKGVVISHRG--AYLSTLSAIIGWEMGTCPVYLWTLPMFH 238
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 35.3 bits (82), Expect = 0.057
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTL 313
++YT G+TG PKGV+ +++ L
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVL 32
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 35.3 bits (82), Expect = 0.084
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 289 IMYTSGSTGTPKGV 302
I+YTSG+TG PKGV
Sbjct: 238 ILYTSGTTGKPKGV 251
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 35.1 bits (81), Expect = 0.088
Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Query: 276 YEGSPPTPKDTAIIMYTSGSTGTPKGV 302
Y+G PP P+ ++I YTSG+TG PKGV
Sbjct: 146 YDG-PPVPQPQSMI-YTSGTTGHPKGV 170
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 34.3 bits (79), Expect = 0.16
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 262 FKQIVKRGSESGSRYEG-SPPTPKDTAIIMYTSGSTGTPKGVVLTHDN 308
F + ++ S R G D ++ +TSG+TG PK V HD+
Sbjct: 162 FDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPKMV--EHDH 207
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 34.0 bits (79), Expect = 0.20
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 17/52 (32%)
Query: 289 IMYTSGSTGTPK-------GVVLTHDNMISTLKAFSDAVH--IEPNDVFLGY 331
I+Y+SG+TG PK G++L H LK +H + P D F Y
Sbjct: 268 ILYSSGTTGLPKCIVHGHGGILLEH------LKEL--GLHCDLGPGDRFFWY 311
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 32.0 bits (73), Expect = 0.75
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ Q+ ++ F + L +L NV+I+ E +IA +C + ++
Sbjct: 94 TYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSV 153
Query: 201 EAIAHGINETEVNIVITTH-----DLLPKFRNILKLTPRVST------LIYMEDQLTSTD 249
+++ I ++ITT+ D + F LK +ST + + +TS
Sbjct: 154 KSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSES 213
Query: 250 TTNFKQGIEIVP-----FKQIVK-RGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVV 303
+ I +P + +I K + + YE P I+YTSG+TG K VV
Sbjct: 214 DLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVV 273
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 31.4 bits (71), Expect = 1.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH 321
PP DTA I Y + G+ GV +TH +++ +A A
Sbjct: 142 PPANLDTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQ 183
>gnl|CDD|100072 cd02643, R3H_NF-X1, R3H domain of the X1 box binding protein
(NF-X1) and related proteins. Human NF-X1 is a
transcription factor that regulates the expression of
class II major histocompatibility complex (MHC) genes.
The Drosophila homolog shuttle craft (STC) has been
shown to be a DNA- or RNA-binding protein required for
proper axon guidance in the central nervous system and,
the yeast homolog FAP1 encodes a dosage suppressor of
rapamycin toxicity. The name of the R3H domain comes
from the characteristic spacing of the most conserved
arginine and histidine residues. The function of the
domain is predicted to bind ssDNA or ssRNA in a
sequence-specific manner.
Length = 74
Score = 28.9 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 145 VNDEAEAFGKGLRSLGQEPRHNVVIFA 171
V++ AE FG S QEP+ NVV A
Sbjct: 48 VHELAEHFGIESVSYDQEPKRNVVATA 74
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 31.6 bits (71), Expect = 1.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDN--MISTLKAFSDAVHIEPNDVFLGYLPLAH 336
+ YT+G+TG PKGVV +H + S + D + DV L +P+ H
Sbjct: 154 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 207
>gnl|CDD|233219 TIGR00976, /NonD, putative hydrolase, CocE/NonD family. This model
represents a protein subfamily that includes the cocaine
esterase CocE, several glutaryl-7-ACA acylases, and the
putative diester hydrolase NonD of Streptomyces griseus
(all hydrolases). This family shows extensive, low-level
similarity to a family of xaa-pro dipeptidyl-peptidases,
and local similarity by PSI-BLAST to many other
hydrolases [Unknown function, Enzymes of unknown
specificity].
Length = 550
Score = 30.9 bits (70), Expect = 1.9
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKR--KWAKRGF 428
GT+ V P VP+IL SR K A + + + +G+
Sbjct: 6 GTRLAIDVYRPAGGGPVPVIL-----------SRTPYGKDAGLRWGLDKTEPAWFVAQGY 54
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 30.1 bits (68), Expect = 2.7
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 291 YTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND 326
+TSGSTG PK + + + + H++ D
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKRED 185
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 30.4 bits (69), Expect = 2.8
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHIEPNDVF 328
I+++SG+TG PK + T ++ L+A +DA + I D+
Sbjct: 361 ILFSSGTTGEPKAIPWTQ---LTPLRAAADAWAHLDIRKGDIV 400
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 30.4 bits (69), Expect = 3.0
Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 29/95 (30%)
Query: 230 KLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEG----------- 278
L V I E +L + +P + GS G EG
Sbjct: 354 TLDQLVRDYIDKELELRTE-----------IPALALQDDGSLVGGSLEGGETDVLAPYQA 402
Query: 279 --SPPT-----PKDTAIIMYTSGSTGTPKGVVLTH 306
PT P + +TSGS G PKGV+ H
Sbjct: 403 LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRH 437
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 30.2 bits (68), Expect = 3.1
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 278 GSPPTPKDTAI-----IMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHIEPNDVF 328
G+ +P + I+++SG+TG PK + TH +S L+ SD + I+P DV
Sbjct: 108 GNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTH---LSPLRCASDGWAHMDIQPGDVV 163
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 30.0 bits (67), Expect = 3.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 287 AIIMYTSGSTGTPKGVVLTHDNMISTLKAF-SDAVHIEPNDVFL 329
A YTSG+TG PK + H + ++ + A A+ + P D L
Sbjct: 148 AYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGL 191
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 30.0 bits (68), Expect = 3.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT 485
R+R +S G PL+P+ E +K + GYG TETT
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETT 237
Score = 28.9 bits (65), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 283 PKDTAIIMYTSGSTGTPKGVVLTH 306
D ++ +TSG+TG PK V+ TH
Sbjct: 83 ADDPILLYFTSGTTGLPKLVLHTH 106
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 29.8 bits (67), Expect = 3.5
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 113 RQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEPRHNVVIFA 171
R++ + + P IF + R ++ G+ L L G E V++ A
Sbjct: 325 RELFEKARKLAP-SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIA 383
Query: 172 ETRAEWMI 179
T +
Sbjct: 384 ATNRPDDL 391
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 30.0 bits (67), Expect = 3.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 287 AIIMYTSGSTGTPKG---------VVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
A+++Y+SG+TG PKG V D +++ +AF D I +D++ P+ H
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYD---ISESDIYYSSAPIYHA 207
Query: 338 FEL 340
L
Sbjct: 208 APL 210
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 29.6 bits (66), Expect = 4.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 271 ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGV 302
ESG R + P I++ TSG+TG PKGV
Sbjct: 165 ESGGRPAVAAPG----RIVLLTSGTTGKPKGV 192
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 29.5 bits (66), Expect = 4.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 292 TSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV--FLGYLPLAHVFELL 341
TSGSTGTPK V + ++S +A + + P V + +P H++ L
Sbjct: 103 TSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFL 154
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 29.4 bits (66), Expect = 4.9
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 176 EWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRV 235
EW + AC + + + L + I + + ++ ++T+ +L P +I P +
Sbjct: 79 EWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSL 138
Query: 236 STLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYE-GSPPTPKDTAIIMYTSG 294
T + + + S D + FK+++K S + + S ++ I +TSG
Sbjct: 139 KTKLLVSEH--SRDGW--------LNFKELLKEASTEHTCVKTKS----QEPMAIYFTSG 184
Query: 295 STGTPKGVVLTH 306
+TG PK +H
Sbjct: 185 TTGFPKMAEHSH 196
Score = 29.0 bits (65), Expect = 7.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT-SCAT 489
+R ++GG PL+P+ E K + +GYG TET CA
Sbjct: 292 SLRHCVTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICAN 334
>gnl|CDD|168300 PRK05934, PRK05934, type III secretion system protein; Validated.
Length = 341
Score = 29.4 bits (66), Expect = 5.0
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 224 KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGS 274
+ L R L +M++ L S IEIVPF + + S
Sbjct: 201 DYLATLPKEAREKLLSHMQEILKSAFPEMHPIVIEIVPFLKTAHKTSRLSK 251
>gnl|CDD|176993 CHL00052, rpl2, ribosomal protein L2.
Length = 273
Score = 29.1 bits (66), Expect = 5.3
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 60 AEIISKDNKSVTIRSISGPQENHIRLIR 87
A++I+K+ KS T++ SG +RLI
Sbjct: 160 AKLIAKEGKSATLKLPSG----EVRLIS 183
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 29.2 bits (66), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 17/58 (29%)
Query: 440 QTKKLLGGRV------RLILSGGAPLSPDTHEL-----IKVCLCEKVIQGYGLTETTS 486
Q ++LL R R IL GGAP P E +++ YG+TET S
Sbjct: 217 QLQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETAS 268
>gnl|CDD|217690 pfam03718, Glyco_hydro_49, Glycosyl hydrolase family 49. Family of
dextranase (EC 3.2.1.11) and isopullulanase (EC
3.2.1.57). Dextranase hydrolyses alpha-1,6-glycosidic
bonds in dextran polymers.
Length = 566
Score = 29.5 bits (66), Expect = 5.6
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 124 PNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAE 172
NG F ++E + ND + G + EPR+ ++IFA
Sbjct: 140 ANGYRFSV----EFEPDLYTAYNDMSGYVTSGGSVIHTEPRNALMIFAS 184
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation
of the translation initiation complex, where it might
contact the messenger RNA and several components of the
ribosome. It has been shown that in Escherichia coli
RPS2 is essential for the binding of ribosomal protein
S1 to the 30s ribosomal subunit. In humans, most likely
in all vertebrates, and perhaps in all metazoans, the
protein also functions as the 67 kDa laminin receptor
(LAMR1 or 67LR), which is formed from a 37 kDa
precursor, and is overexpressed in many tumors. 67LR is
a cell surface receptor which interacts with a variety
of ligands, laminin-1 and others. It is assumed that the
ligand interactions are mediated via the conserved
C-terminus, which becomes extracellular as the protein
undergoes conformational changes which are not well
understood. Specifically, a conserved palindromic motif,
LMWWML, may participate in the interactions. 67LR plays
essential roles in the adhesion of cells to the basement
membrane and subsequent signalling events, and has been
linked to several diseases. Some evidence also suggests
that the precursor of 67LR, 37LRP is also present in the
nucleus in animals, where it appears associated with
histones.
Length = 193
Score = 28.3 bits (64), Expect = 6.5
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 150 EAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
E G++ + + P +VI + R E A + K IPV+ I
Sbjct: 115 EKNLGGIKDMFRLPD--LVIVLDPRKE-HQAIREASKLGIPVIAI 156
>gnl|CDD|223331 COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and
metabolism].
Length = 272
Score = 28.4 bits (64), Expect = 7.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQ 161
D+ R FN EAE G G R +
Sbjct: 56 ADFHLRIFNSDGSEAEMCGNGARCFAR 82
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase.
Length = 288
Score = 28.3 bits (64), Expect = 8.5
Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 17/135 (12%)
Query: 141 SFN-QVNDEAEAFGKGLRSLGQEPRHNVV------IFAETRAEWMIAAQACFKQNIPVVT 193
FN V A K L++ G+E V+ F R I A+ + P
Sbjct: 90 GFNSNVIKAALELIKELKAEGKEVDLIVIGKKGRDFFK--RRGKNIIAEFTGLGDKPTFE 147
Query: 194 IYATLGEEAIAHGINET--EVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
A + +E I +N EV +V KF N L P V L+ ++ + +
Sbjct: 148 EAAEIADELIELFLNGEYDEVYLVYN------KFVNALSQEPTVEQLLPIDIEEEEEEEA 201
Query: 252 NFKQGIEIVPFKQIV 266
+ E P + V
Sbjct: 202 ESRADYEYEPDAEEV 216
>gnl|CDD|216986 pfam02350, Epimerase_2, UDP-N-acetylglucosamine 2-epimerase. This
family consists of UDP-N-acetylglucosamine 2-epimerases
EC:5.1.3.14 this enzyme catalyzes the production of
UDP-ManNAc from UDP-GlcNAc. Note that some of the
enzymes is this family are bifunctional, and in those
instances Pfam matches only the N-terminal half of the
protein suggesting that the additional C-terminal part
(when compared to mono-functional members of this
family) is responsible for the UPD-N-acetylmannosamine
kinase activity of these enzymes. This hypothesis is
further supported by the assumption that the C-terminal
part of rat UDP-GlcNAc-2-epimerase is the kinase domain.
Length = 346
Score = 28.2 bits (64), Expect = 10.0
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTH 219
E + A A F IPV + A L + G+ E E+N +
Sbjct: 77 TNETLAGALAAFYLRIPVAHVEAGLRSFDLTEGMPE-EINRHLIDK 121
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,554,951
Number of extensions: 2519263
Number of successful extensions: 2563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2441
Number of HSP's successfully gapped: 268
Length of query: 504
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 403
Effective length of database: 6,457,848
Effective search space: 2602512744
Effective search space used: 2602512744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)