RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6874
(504 letters)
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 150 bits (380), Expect = 1e-39
Identities = 74/370 (20%), Positives = 128/370 (34%), Gaps = 80/370 (21%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ + +++ GK L++ G + + +E E+ I A + V
Sbjct: 54 SYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ H + ++ IV ++ L K + K + T++ ++ + D ++
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK---VDYRGYQ------ 164
Query: 261 PFKQIVKRGSESGSRYEGSPPTP----KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
+KR + G + + A+IM +SGSTG PKGV LTH+N+++
Sbjct: 165 CLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHA 224
Query: 317 SDAV---HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSS 366
D + + P L +P H F + L + G+ T + T
Sbjct: 225 RDPIYGNQVSPGTAVLTVVPFHHGFGM----FTTLGYLICGFRVVMLTKFDEETFLKTLQ 280
Query: 367 KIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKR 426
K T++ VP + + K E + K
Sbjct: 281 DYK-----------CTSVILVPTLFAILNK--SELL---------------------NKY 306
Query: 427 GFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETT 485
+ I SGGAPLS + + + V QGYGLTETT
Sbjct: 307 DLSN------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT 348
Query: 486 SCATVMHLND 495
S + D
Sbjct: 349 SAIIITPEGD 358
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 149 bits (378), Expect = 2e-39
Identities = 70/366 (19%), Positives = 116/366 (31%), Gaps = 72/366 (19%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ + + + + ++ G H +V+ +E ++ + + V E
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ + +N ++ +V + L K N+ K P + +I M+ TD F+ V
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDS---KTDYQGFQSMYTFV 168
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
+ G S K A+IM +SGSTG PKGV L H D +
Sbjct: 169 --TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 321 ---HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKIKR 370
I P+ L +P H F + L + G+ + + K
Sbjct: 227 FGNQIIPDTAILSVVPFHHGFGM----FTTLGYLICGFRVVLMYRFEEELFLRSLQDYK- 281
Query: 371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRC 430
+ VP + K + K
Sbjct: 282 ----------IQSALLVPTLFSFFAK--STLI---------------------DKYDLSN 308
Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCAT 489
+ I SGGAPLS + + K + QGYGLTETTS
Sbjct: 309 ------------------LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350
Query: 490 VMHLND 495
+ D
Sbjct: 351 ITPEGD 356
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 147 bits (373), Expect = 1e-38
Identities = 65/418 (15%), Positives = 131/418 (31%), Gaps = 100/418 (23%)
Query: 101 VTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLG 160
+F ++ + I AE +F ++ + + G+ G
Sbjct: 29 AEKFGEKTAI----ISAEPKFPSEFPESM-----------NFLEICEVTKKLASGISRKG 73
Query: 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220
+V + ++++ A ++ V I + H +N++E ++
Sbjct: 74 VRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSM 133
Query: 221 LLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSP 280
L F+ +L+ T V + + E+ +++ GSE + +P
Sbjct: 134 LYENFKPVLEKTG-VERVFVVGG--------------EVNSLSEVMDSGSEDFENVKVNP 178
Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL 340
D A+I YT G+TG PKGV+LTH N+ + + A + D +G +P+ H E
Sbjct: 179 EE--DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEF 236
Query: 341 LSESVCLLCGVAIGYST-------PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDR 393
+ V +G + + K K T AVP L+
Sbjct: 237 ----GLVNLMVTVGNEYVVMGMFNQEMLAENIEKYK-----------GTFSWAVPPALNV 281
Query: 394 IYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLIL 453
+ + + +++
Sbjct: 282 LVNTLE-------------------------------SSNKTYDW--------SYLKVFA 302
Query: 454 SGGAPLSPDTHELIK-------VCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL 504
+G P++P E + + Q +G+TE T + + G+
Sbjct: 303 TGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGV 360
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 143 bits (364), Expect = 2e-37
Identities = 56/373 (15%), Positives = 106/373 (28%), Gaps = 75/373 (20%)
Query: 132 YVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV 191
Y+ ++ ++ + A F LR+LG P +++ +A +
Sbjct: 42 YIDDTGST-TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100
Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
V L + + + VI + L+ L+ + + S
Sbjct: 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRL 160
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
F++++ + + + D A +Y+SGSTG PKG V TH N+
Sbjct: 161 -------APLFEELIDAAAP---AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYW 210
Query: 312 TLKAFSDAVH-IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYS--------TPLTMI 362
T + ++ + I NDV L + L L +++G + T +
Sbjct: 211 TAELYAKPILGIAENDVVFSAAKLFFAYGL---GNGLTFPLSVGATAILMAERPTADAIF 267
Query: 363 DTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRK 422
+ + PT VP + +
Sbjct: 268 ARLVEHR-----------PTVFYGVPTLY------------------ANMLVSP-----N 293
Query: 423 WAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT 482
R +R+ S G L + E +++ G G T
Sbjct: 294 LPARADV------------------AIRICTSAGEALPREIGERFTAHFGCEILDGIGST 335
Query: 483 ETTSCATVMHLND 495
E
Sbjct: 336 EMLHIFLSNRAGA 348
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 141 bits (357), Expect = 1e-36
Identities = 68/356 (19%), Positives = 109/356 (30%), Gaps = 82/356 (23%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
S+ ++ A L + G + V E E ++ A + + +
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ + I + E IV+ I + + + + TD
Sbjct: 90 HELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTD----------- 138
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
+ + + D A I+YTSG+TG KG +L+HDN+ S D
Sbjct: 139 -------AAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW 191
Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKIKRGTK 373
P+DV + LP+ H L V + S P ++D + R
Sbjct: 192 RFTPDDVLIHALPIYHTHGL---FVASNVTLFARGSMIFLPKFDPDKILDL---MAR--- 242
Query: 374 GDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLI 433
T L VP R+ SP + K
Sbjct: 243 -------ATVLMGVPTFYTRLL---------QSP--------------RLTKETTG---- 268
Query: 434 DKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
+RL +SG APL DTH V++ YG+TET +
Sbjct: 269 --------------HMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTS 310
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 143 bits (363), Expect = 1e-36
Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 75/362 (20%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
+++ V+ + LG V++ E++++ A +
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
IA + ++IT + K + + V I + + + +
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEG--------CL 201
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA- 319
F ++ + +E+ + +P D + Y+SG+TG PKGV+LTH +++++ D
Sbjct: 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 261
Query: 320 ---VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKIK 369
++ +DV L LP+ H++ L + +LCG+ +G + +++ + K
Sbjct: 262 NPNLYFHSDDVILCVLPMFHIYAL---NSIMLCGLRVGAAILIMPKFEINLLLELIQRCK 318
Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
T VP I+ I K
Sbjct: 319 -----------VTVAPMVPPIVLAIAK--S------------------------------ 335
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCA 488
+K +R++ SG APL + + K+ QGYG+TE
Sbjct: 336 -SETEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVL 386
Query: 489 TV 490
+
Sbjct: 387 AM 388
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 139 bits (354), Expect = 3e-36
Identities = 65/363 (17%), Positives = 126/363 (34%), Gaps = 85/363 (23%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ V A GL +G + +++F + E+++A + +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTP-RVSTLIYMEDQLTSTDTTNFKQGIEI 259
+A + ++IT K ++ + + +V + D
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPD--------------GC 156
Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319
+ F ++ + + +P D + Y+SG+TG PKGV+LTH +I+++ D
Sbjct: 157 LHFSELTQAD---ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDG 213
Query: 320 ----VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKI 368
++ DV L LP+ H++ L + +LCG+ +G +++ K
Sbjct: 214 DNPNLYFHSEDVILCVLPMFHIYAL---NSIMLCGLRVGAPILIMPKFEIGSLLGLIEKY 270
Query: 369 KRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF 428
K + VP ++ I K
Sbjct: 271 K-----------VSIAPVVPPVMMSIAK-------------------------------- 287
Query: 429 RCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSC 487
P +DK +R+I SGGAPL + + ++ QGYG+TE
Sbjct: 288 -SPDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPV 338
Query: 488 ATV 490
+
Sbjct: 339 LAM 341
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 133 bits (338), Expect = 4e-34
Identities = 71/391 (18%), Positives = 119/391 (30%), Gaps = 88/391 (22%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
+L + P D ++ Q+N A L +LG V +
Sbjct: 20 WMLRQRATVSPR-LQAYVEPSTDVRM-TYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
E+ K V I L ++ ++++ +VI P I
Sbjct: 78 SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD 137
Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
T+ + + R + + D IMYTS
Sbjct: 138 PPGTVTDWIGADSLAE------------------RLRSAAADEPAVECGGDDNLFIMYTS 179
Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAI 353
G+TG PKGVV TH+++ S +++ + + D L LP+ HV L ++
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL----TTVIFSAMR 235
Query: 354 GYST-------PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS 406
G + + I AVP IL+ +
Sbjct: 236 GVTLISMPQFDATKVWSL---IVEE--------RVCIGGAVPAILNFMR---------QV 275
Query: 407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHEL 466
P ++A+ R ++GGAP+ L
Sbjct: 276 P--------------EFAELDA------------------PDFRYFITGGAPMPE---AL 300
Query: 467 IKVC--LCEKVIQGYGLTETTSCATVMHLND 495
IK+ +V+QGY LTE+ T++ D
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSED 331
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 131 bits (332), Expect = 2e-33
Identities = 69/375 (18%), Positives = 122/375 (32%), Gaps = 84/375 (22%)
Query: 132 YVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV 191
G + ++ + EA K L++ Q R V ++ + + +I AC+ NI +
Sbjct: 20 ITDGQESY-TYQNLYCEASLLAKRLKAYQQS-R--VGLYIDNSIQSIILIHACWLANIEI 75
Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT--PRVSTLIYMEDQLTSTD 249
I L + + + +V ++ T L + I+ L I L +T
Sbjct: 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTM 135
Query: 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM 309
+ E V ES S + D A IM+TSG+TG K V T N
Sbjct: 136 GIQYDTSNETV-------VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNH 188
Query: 310 ISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMI 362
++ +++ + + +L LP+ H+ L LL V G++ ++
Sbjct: 189 YASAIGCKESLGFDRDTNWLSVLPIYHISGL----SVLLRAVIEGFTVRIVDKFNAEQIL 244
Query: 363 DTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRK 422
IK T ++ VP L+ + + +
Sbjct: 245 TM---IKNE--------RITHISLVPQTLNWLMQ--QGLHEPYN---------------- 275
Query: 423 WAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC--LCEKVIQGYG 480
++ IL GGA LS +I+ + +G
Sbjct: 276 --------------------------LQKILLGGAKLSA---TMIETALQYNLPIYNSFG 306
Query: 481 LTETTSCATVMHLND 495
+TET S
Sbjct: 307 MTETCSQFLTATPEM 321
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 126 bits (319), Expect = 3e-31
Identities = 57/370 (15%), Positives = 111/370 (30%), Gaps = 77/370 (20%)
Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
+ G+ + S+ ++N A+ LR G +P ++ AE I A K + V
Sbjct: 45 IDGERQL-SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPV 103
Query: 193 TIYATLGEEAIAHGINETEVNIVIT-----THDLLPKFRNILKLTPRVSTLIYMEDQLTS 247
+ + ++ E ++I + + + + D
Sbjct: 104 LALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND---- 159
Query: 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHD 307
+ N + I + + +P + A + G+TGTPK + TH+
Sbjct: 160 SGEHNLQDAI------------NHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHN 207
Query: 308 NMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSK 367
+ +++ + +L +P AH + + S GV
Sbjct: 208 DYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAM---SSPGSLGVF--------------- 249
Query: 368 IKRGTKGDASVLHPT--ALTAVPLILDRIYKGVHEKVSRAS---PFKRALFAFAFEYKRK 422
G VL A PLI +V+ + P E
Sbjct: 250 ----LAGGTVVLAADPSATLCFPLIEK-------HQVNVTALVPPAVSLWLQALIE---G 295
Query: 423 WAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT 482
++ ++L+ GGA LS I + ++ Q +G+
Sbjct: 296 ESRAQLA------------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMA 337
Query: 483 ETTSCATVMH 492
E T +
Sbjct: 338 EGLVNYTRLD 347
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 124 bits (314), Expect = 6e-31
Identities = 71/365 (19%), Positives = 120/365 (32%), Gaps = 99/365 (27%)
Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
G+ ++ ++ A A + V ++A E +A A + V
Sbjct: 43 RFGERSL-TYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAV 96
Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
+ G++ +AH ++++ ++V+ D +L P + L ++ + +
Sbjct: 97 PLNPKSGDKELAHILSDSAPSLVLAPPDA--------ELPPALGALERVDVDVRARGAV- 147
Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
D A+++YTSG+TG PKG V+ + +T
Sbjct: 148 ------------------------PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATT 183
Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYS-------TPLTMIDTS 365
L A +DA DV + LPL HV L + +L + G S +
Sbjct: 184 LDALADAWQWTGEDVLVQGLPLFHVHGL---VLGILGPLRRGGSVRHLGRFSTEGAARE- 239
Query: 366 SKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAK 425
+ G T L VP + RI + A A
Sbjct: 240 --LNDG---------ATMLFGVPTMYHRIA---------ETLPADPELAKAL-------- 271
Query: 426 RGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT 485
RL++SG A L HE I +VI+ YG+TET
Sbjct: 272 ---------------------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL 310
Query: 486 SCATV 490
+V
Sbjct: 311 MNTSV 315
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 115 bits (290), Expect = 9e-28
Identities = 52/317 (16%), Positives = 96/317 (30%), Gaps = 43/317 (13%)
Query: 132 YVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV 191
+++ + AE GL G V I ++ +E + A +
Sbjct: 25 FMVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83
Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
+ + L + IA + + ++V+ D +L V + D S
Sbjct: 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD--GSGPFA 141
Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
FK PF D +I++T+ G P+G +++ N++
Sbjct: 142 PFKDLASDTPF--------------SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLI 187
Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDT 364
+ DA + DV LG LPL HV L +L G ++ P
Sbjct: 188 AQSSLVDAWRLTEADVNLGMLPLFHVTGL----GLMLTLQQAGGASVIAAKFDPAQAARD 243
Query: 365 SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA 424
I+ T + +L I ++ + + E ++
Sbjct: 244 ---IEAH--------KVTVMAEFAPMLGNILD--QAAPAQLASLRAVTGLDTPETIERFE 290
Query: 425 KRGFRCPLIDKVVFGQT 441
FGQ+
Sbjct: 291 ATCPNATFWA--TFGQS 305
Score = 44.8 bits (107), Expect = 4e-05
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
+R + P + + C +G +ET+ +T D
Sbjct: 273 SLRAVTGLDTPETIE--RFEATCPNATFWATFGQSETSGLSTFAPYRD 318
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 113 bits (284), Expect = 7e-27
Identities = 35/230 (15%), Positives = 83/230 (36%), Gaps = 23/230 (10%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
+IL + P+ + + G+ + S+ +++ + L G ++
Sbjct: 34 RILTVGVQSHPH-SLA--IICGERQL-SYIELDRLSTNLATRLAEKGLGKGDTALVQLPN 89
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT-----THDLLPKFRNI 228
AE+ I A K + V+ + + + I + + ++I ++
Sbjct: 90 VAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSL 149
Query: 229 LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI 288
+ ++ + Q T ++ + + + + + S + A
Sbjct: 150 HDVNLSPEIILMLNHQATDFGLLDWIE--------------TPAETFVDFSSTPADEVAF 195
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVF 338
+ GSTGTPK + TH++ +++A ++ + N L LP H F
Sbjct: 196 FQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNF 245
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 109 bits (275), Expect = 8e-26
Identities = 63/388 (16%), Positives = 118/388 (30%), Gaps = 85/388 (21%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
++L + P+ + ++ EA L + G P+ V + A
Sbjct: 6 EMLRRAATRAPD-HCALAVPARGLRL-THAELRARVEAVAARLHADGLRPQQRVAVVAPN 63
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
A+ +IA A + + L +A I E+ + + + + +
Sbjct: 64 SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG--RQVADAIFQSG 121
Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
+ +I++ D + + G E P A I YTS
Sbjct: 122 SGARIIFLGDLVRDGEPY-------------------SYGPPIEDPQREPAQPAFIFYTS 162
Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFELLSESVCLLCGV 351
G+TG PK ++ S + S V + ++V LG +PL HV L+ +
Sbjct: 163 GTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF---FAVLVAAL 219
Query: 352 AIGYST-------PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR 404
A+ + P+ + +++ T+L A P LD +
Sbjct: 220 ALDGTYVVVEEFRPVDALQL---VQQE--------QVTSLFATPTHLDALA--------- 259
Query: 405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTH 464
A+ A + + V F GA +
Sbjct: 260 AAA--------------AHAGSSLKLDSLRHVTFA----------------GATMPDAVL 289
Query: 465 ELIKVCLCEKVIQGYGLTETTSCATVMH 492
E + L + + YG TE + +
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQ 317
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 109 bits (274), Expect = 8e-26
Identities = 70/399 (17%), Positives = 117/399 (29%), Gaps = 92/399 (23%)
Query: 121 EKQPNGRIF---KKYVMGDYEWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRA 175
QP+ F D +++Q+ + L G VVI A
Sbjct: 35 RLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL 93
Query: 176 EWMIAAQACFKQNIPVVTIYATLGE---EAIAHGINETEVNIVITTHDLLPKFRNILKLT 232
E+++A + V + G E ++++ ++TT + +
Sbjct: 94 EYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARR 153
Query: 233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYT 292
P S + D + ++ + Y TA + YT
Sbjct: 154 PGESPP-----SIIEVDLLD-----------------LDAPNGYTFKEDEYPSTAYLQYT 191
Query: 293 SGSTGTPKGVVLTHDNMISTLKAFSDAVHIE------PNDVFLGYLPLAHVFELLSESVC 346
SGST TP GVV++H N+ + + PN + +LP H L+
Sbjct: 192 SGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI---G 248
Query: 347 LLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI-LDRI--YKGVHEKVS 403
+ + GY P + S ++R P + +
Sbjct: 249 ICAPILGGY--PAVLTSPVSFLQR-----------------PARWMHLMASDFHAFS--- 286
Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL-LGGRVRLILSGGAPLSPD 462
A+P FAFE + L G + ILSG +
Sbjct: 287 -AAP------NFAFEL------------AARRTTDDDMAGRDL-GNILTILSGSERVQAA 326
Query: 463 T----HELIKVC-LCEKVIQ-GYGLTETTSCATVMHLND 495
T + L E+VI+ Y L E T
Sbjct: 327 TIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQ 365
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 109 bits (275), Expect = 9e-26
Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 29/244 (11%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
+L + K + RI G+ W S+ +++ A+ G + LG + + VV+
Sbjct: 29 DLLRDRAAKYGD-RIA--ITCGNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPN 84
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT-----THDLLPKFRNI 228
E+ A F+ V + I + E I D R +
Sbjct: 85 IKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQV 144
Query: 229 LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI 288
P + +I + E +P + + + D A
Sbjct: 145 QSKLPTLKNIIVAGE------------AEEFLPLEDLHTEPVK------LPEVKSSDVAF 186
Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESV--C 346
+ + GSTG K + THD+ I +LK + ++ + V+L LP+AH + L S V
Sbjct: 187 LQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV 246
Query: 347 LLCG 350
L G
Sbjct: 247 LYAG 250
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 107 bits (270), Expect = 4e-25
Identities = 82/413 (19%), Positives = 128/413 (30%), Gaps = 95/413 (23%)
Query: 103 RFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWR--SFNQVNDEAEAFGKGLRSLG 160
R++D L L G F Y + + AEA K L SL
Sbjct: 16 RYADFPTLV--DALDYAALSSA-GMNF--YDRRCQLEDQLEYQTLKARAEAGAKRLLSLN 70
Query: 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIY--ATLGE-----EAIAHGINETEVN 213
+ V + AET +E++ A AC + V + +G+ + + +
Sbjct: 71 LKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPA 130
Query: 214 IVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESG 273
+IT + LP P + L +
Sbjct: 131 AIITGDEWLPLVNAATHDNPELHVL-------------------------SHAWFKALPE 165
Query: 274 SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFLGYL 332
+ P P D A + YTSGST P+GV++TH +++ L+A S D + + P D + +L
Sbjct: 166 ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWL 225
Query: 333 PLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI-L 391
P H L+ LL VA + + T R PL L
Sbjct: 226 PFYHDMGLVG---FLLTPVATQL--SVDYLRTQDFAMR-----------------PLQWL 263
Query: 392 DRI--YKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL-LGGR 448
I +G +P F +E +V +L L
Sbjct: 264 KLISKNRGTVS----VAP------PFGYEL------------CQRRVNEKDLAELDL-SC 300
Query: 449 VRLILSGGAPLSPDT----HELIKVC-LCEKVIQ-GYGLTETTSCATVMHLND 495
R+ G P+S + E + K YGL E +
Sbjct: 301 WRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEAS 353
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 107 bits (268), Expect = 7e-25
Identities = 73/384 (19%), Positives = 132/384 (34%), Gaps = 83/384 (21%)
Query: 121 EKQPNGRIFKKYVMGDYEWR-SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI 179
PN + ++ + E ++ Q++ A+A L++ G +P V++ +
Sbjct: 22 LHSPNKKSCT-FLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQ 80
Query: 180 AAQACFKQNIPVVTIYATLGEEAIAH--GI-NETEVNIVITTHDLLPKFRN-ILKLTPRV 235
A C V IY E+ + I ++ IV+ D + KF L P+
Sbjct: 81 AFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKF 140
Query: 236 STLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGS 295
+ + ++ S ++ + D A + YTSGS
Sbjct: 141 LKI-----PAIALESIE-----------------LNRSSSWQPTSIKSNDIAFLQYTSGS 178
Query: 296 TGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGY 355
T PKGV+++H N++ L + H+ + +LP H L+ C+L + G
Sbjct: 179 TMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIG---CILTPIYGGI 235
Query: 356 STPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI-LDRI--YKGVHEKVSRASPFKRAL 412
M+ S ++ PL L I YK SP
Sbjct: 236 --QAIMMSPFSFLQN-----------------PLSWLKHITKYKATIS----GSP----- 267
Query: 413 FAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL-LGGRVRLILSGGAPLSPDT----HELI 467
FA++Y + ++ + + L L +G P+ +T ++
Sbjct: 268 -NFAYDY------------CVKRIREEKKEGLDL-SSWVTAFNGAEPVREETMEHFYQAF 313
Query: 468 KVC-LCEKVIQ-GYGLTETTSCAT 489
K ++ YGL E T T
Sbjct: 314 KEFGFRKEAFYPCYGLAEATLLVT 337
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 95.7 bits (239), Expect = 4e-21
Identities = 23/198 (11%), Positives = 63/198 (31%), Gaps = 12/198 (6%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
G+ + +F + ++ G V++ ++R ++ K V
Sbjct: 82 GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141
Query: 195 YATLGEEAIAHGINETEVNIVITTHD--LLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
L I + I + + +++ + + + + +
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID 201
Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPT-PKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
F++ ++ S R G T +D ++ ++SG+ G PK V + +
Sbjct: 202 FRK---------ELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252
Query: 312 TLKAFSDAVHIEPNDVFL 329
+ ++E + +
Sbjct: 253 HILTAKYWQNVEDDGLHY 270
Score = 27.9 bits (63), Expect = 9.2
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 450 RLILSGGAPLSPDT----HELIKVCLCEKVIQGYGLTETT 485
+ + G PL+P+ E + L E G+G TET
Sbjct: 344 KYAVVAGEPLNPEVFNRFLEFTGIKLME----GFGQTETV 379
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 95.8 bits (239), Expect = 4e-21
Identities = 22/197 (11%), Positives = 73/197 (37%), Gaps = 14/197 (7%)
Query: 135 GDYEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVT 193
G +F ++++ ++ L + G + V + EW + C + + +
Sbjct: 69 GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128
Query: 194 IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNF 253
+ I + + ++ ++ +++ + + P + + + ++
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGW---- 184
Query: 254 KQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
+ FK+++ S + ++ + I +TSG++G PK ++ ++
Sbjct: 185 ------LNFKKLLNEAST---THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKA 235
Query: 314 KAFSDAVHIEPNDVFLG 330
K + ++ +D+
Sbjct: 236 KMDAGWTGLQASDIMWT 252
Score = 30.7 bits (70), Expect = 1.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT 485
++ ++ G L P+T E + + + YG TET
Sbjct: 323 HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETG 360
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 71.5 bits (176), Expect = 3e-13
Identities = 58/302 (19%), Positives = 98/302 (32%), Gaps = 88/302 (29%)
Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
E+ I++ + ++ ++T ++ + L +TL + ++
Sbjct: 550 EDRISYMLADSAAACLLTHQEMKEQAAE---LPYTGTTLFIDDQTRFEEQASD------- 599
Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319
P + P D A IMYTSG+TG PKG + TH N+ +K D
Sbjct: 600 -P----------------ATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKH-VDY 641
Query: 320 VHIEPNDVFLGYLPLA---HVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
+ D FL A F+ +L L + D +
Sbjct: 642 MAFSDQDTFLSVSNYAFDAFTFDFY---ASMLNAAR------LIIAD-----------EH 681
Query: 377 SVLHPTALTAVPLILDRIYKGVHEKVSRAS--PFKRALFAFAFEYKRKWAKRGFRCPLID 434
++L LT LI + E V+ ALF + +
Sbjct: 682 TLLDTERLTD--LI-------LQENVNVMFATT---ALFNLLTDAGED------WMKGLR 723
Query: 435 KVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHL 493
++F GG S + +++ K+I YG TE T AT +
Sbjct: 724 CILF----------------GGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVV 767
Query: 494 ND 495
+D
Sbjct: 768 HD 769
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 70.6 bits (174), Expect = 3e-13
Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 59/211 (27%)
Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATL--G-----------EEA 202
G V I E ++ + + I A L G +E
Sbjct: 81 FIEKGIGKDTLVGIMME-KSIDL------------FIGILAVLKAGGAYVPIDIEYPKER 127
Query: 203 IAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPF 262
I + +++++ +++T L+ NI I+ ED + + TN
Sbjct: 128 IQYILDDSQARMLLTQKHLVHLIHNI---QFNGQVEIFEEDTIKIREGTNLH-------- 176
Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI 322
P D A ++YTSG+TG PKG +L H + + F +++++
Sbjct: 177 ----------------VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNV 220
Query: 323 EPNDVFLGYLPL---AHVFELLSESVCLLCG 350
D + + A V+E+ LL G
Sbjct: 221 TEKDRIGQFASISFDASVWEMFM---ALLTG 248
Score = 30.1 bits (69), Expect = 2.1
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 449 VRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
++ +++ G+ SP K + I YG TETT CAT
Sbjct: 295 IQTLITAGSATSPSLVNKWKEKV--TYINAYGPTETTICATTWVATK 339
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 69.5 bits (171), Expect = 8e-13
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL---A 335
+ I+YTSGSTG PKGV +T++ ++S K + +++ VFL P
Sbjct: 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDL 198
Query: 336 HVFELLSESVCLLCG 350
V ++ L+ G
Sbjct: 199 SVMDIYP---SLVTG 210
Score = 31.3 bits (72), Expect = 0.86
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 448 RVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
++ L G L + +LI+ ++ YG TE T T +H+ +
Sbjct: 262 NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTE 310
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 68.3 bits (168), Expect = 2e-12
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA--- 335
+T I+YTSGSTG PKGV ++ N+ S + +FL P +
Sbjct: 138 QWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDL 197
Query: 336 HVFELLSESVCLLCG 350
V +L CL G
Sbjct: 198 SVMDLYP---CLQSG 209
Score = 29.4 bits (67), Expect = 2.8
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 448 RVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
+ G L L++ K+ YG TE T T + + +
Sbjct: 261 HADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN 309
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 68.3 bits (168), Expect = 2e-12
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 278 GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA-- 335
A I ++SG+TG PK + TH + + P FL PL+
Sbjct: 158 RPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFD 216
Query: 336 -HVFELLSESVCLLCG 350
E+ LL G
Sbjct: 217 AATLEIW---GALLNG 229
Score = 34.4 bits (80), Expect = 0.083
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 449 VRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
+R +L+GG LS + ++ GYG TE T+ + D
Sbjct: 278 LRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTD 325
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 65.0 bits (159), Expect = 3e-11
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF--------SDAVHIEPNDVFLG 330
+ A ++YTSGSTGTPKGV ++ N+ S A+ ++ + FL
Sbjct: 170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229
Query: 331 YLPL---AHVFELLSESVCLLCG 350
H+ E+ + G
Sbjct: 230 LASRAFDVHIGEMF---LAWRFG 249
Score = 34.5 bits (80), Expect = 0.074
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 449 VRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHL 493
+ + GG ++P T ++ ++ YG TE T + +
Sbjct: 296 LVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI 340
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 64.1 bits (157), Expect = 4e-11
Identities = 36/213 (16%), Positives = 60/213 (28%), Gaps = 63/213 (29%)
Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATL--G-----------EEA 202
+ SL + V++F + M + T A G E
Sbjct: 46 IDSLALLAKSPVLVFGA-QTYDM------------LATFVALTKSGHAYIPVDVHSAPER 92
Query: 203 IAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPF 262
I I + +++I + I + +L +E +
Sbjct: 93 ILAIIEIAKPSLIIAIEEFPLTIEGI-----SLVSLSEIESAKLAEMPYE---------- 137
Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD--AV 320
D I++TSG+TG PKGV ++HDN++S + A
Sbjct: 138 --------------RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF 183
Query: 321 HIEPNDVFLGYLPL---AHVFELLSESVCLLCG 350
+ L P V L G
Sbjct: 184 DVPKQPQMLAQPPYSFDLSVMYWAP---TLALG 213
Score = 29.8 bits (68), Expect = 2.5
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 449 VRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
+ G L+ T +L + K+I YG TE T + + +
Sbjct: 266 LTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITR 313
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 62.5 bits (153), Expect = 1e-10
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
L + IA+ +N E +++ +LLP I V + M+++
Sbjct: 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLA------ 159
Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTH-DNMISTL-K 314
+++ + ++ P+ A M YT+G+TG PKGVV +H ++ +L
Sbjct: 160 ----YEEALGEEADP-------VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA 208
Query: 315 AFSDAVHIEPNDVFLGYLPLAHV 337
+ D + DV L +P+ HV
Sbjct: 209 SLVDGTALSEKDVVLPVVPMFHV 231
Score = 34.8 bits (81), Expect = 0.073
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 15/55 (27%)
Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEK-------VIQGYGLTETTSCATVMHLND 495
+R ++ GG+ L + V QGYGLTET+ +
Sbjct: 294 TLRRLVVGGSAAPRS--------LIARFERMGVEVRQGYGLTETSPVVVQNFVKS 340
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 3e-10
Identities = 72/405 (17%), Positives = 126/405 (31%), Gaps = 116/405 (28%)
Query: 31 AFVCDIITYPVYLFLQRPWEKKSLSSKKKAEII-SKDNKSVTIR---SISGPQENHIRLI 86
AFV + V K LS ++ II SKD S T+R ++ QE ++
Sbjct: 28 AFVDNFDCKDVQDMP-----KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 87 RDGVDTMEKVLR----YVVTRFSD---QRCLGTRQILAEEDEKQPNGRIFKKY-VMGDYE 138
+E+VLR ++++ Q + TR + + D + ++F KY V
Sbjct: 83 ------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----- 131
Query: 139 WRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM-------IAAQACFKQNIPV 191
R + L L P NV+I + +A C + V
Sbjct: 132 SRL-----QPYLKLRQALLEL--RPAKNVLIDG------VLGSGKTWVALDVC--LSYKV 176
Query: 192 VT-----IY-ATLGEEAIAHGI------------------NETEVNIVITTHDLLPKFRN 227
I+ L + ++ NI + H + + R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 228 ILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTA 287
+LK P + L+ + + + F +I ++ T +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-----LL---------------TTRFKQ 276
Query: 288 IIMYTSGSTGTPKGVV-----LTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
+ + S +T T + LT D + P D LP E+L+
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQD-----LPR----EVLT 324
Query: 343 ESVCLLCGVAIGYSTPLTMID-----TSSKIKRGTKGDASVLHPT 382
+ L +A L D K+ + +VL P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 59.4 bits (143), Expect = 9e-10
Identities = 31/215 (14%), Positives = 60/215 (27%), Gaps = 39/215 (18%)
Query: 287 AIIMYTSGSTGTPKGVVLTHDNMISTL---KAFSDAVHIEPNDVFLGYLPL-AHVFELLS 342
+ + G+TG PK VV + + + + P+ L +P H+ ++
Sbjct: 94 PQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN 153
Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402
+ L G + +S + + G + V L + +
Sbjct: 154 KERALRLG-GMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMN------QDI 206
Query: 403 SR---ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
P R L KR + + I GG L
Sbjct: 207 RFLVTTPPVLREL-----------LKRPEVVLQMK------------QSLAQITLGGTEL 243
Query: 460 SPDTHELI--KVCLCEKVIQGYGLTETTSCATVMH 492
+ D + I ++ + YG T + +
Sbjct: 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 2e-06
Identities = 89/563 (15%), Positives = 167/563 (29%), Gaps = 181/563 (32%)
Query: 38 TYPV----YLFLQRPWEK--KSLSSKKKAEIISKDNKSVTIRSISGPQE------NHI-R 84
V + + E+ K L E + D++ + P E ++
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEP--TEGFAADDE------PTTPAELVGKFLGYVSS 70
Query: 85 LIRDG-VDTMEKVLRYVVTRFSDQRCLGTRQI------LAEEDEKQP--NGRIFKKYVMG 135
L+ V ++VL +T F + L I L +E++ + K Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--- 126
Query: 136 DYEWRS--------------FNQVND-EAEAF----GKG--------LRSLGQEPRHNVV 168
R F V + A+ G+G LR L Q V
Sbjct: 127 -ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 169 IFAETRAEWM-------IAAQACFKQNIPVV----TIYATLGEEAIAH------GINETE 211
+ AE + + A+ F Q + ++ T ++ + I +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 212 -VNIVIT--THDLLP-KFRNILK-LTPRVSTLIYMEDQLTSTDT-----TNFKQGIEIVP 261
+ V+T P + R+ LK T L+ + TD+ + ++ I ++
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAETDSWESFFVSVRKAITVL- 303
Query: 262 FKQIVKRGSESGSRYEGSP-------------PTP----KD------TAIIMYTSGSTGT 298
F I R E+ P P+P + + T+
Sbjct: 304 F-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 299 PKGVVL----THDNMI-----STLKAFSDAVHIE--PND-------------VF-LGYLP 333
K V + N++ +L + + P+ F +LP
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 334 LA---HVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI 390
+A H + L ++ S I + + + + +P +
Sbjct: 423 VASPFH--------------------SHL-LVPASDLINKDLVKNNVSFNAKDI-QIP-V 459
Query: 391 LDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAK-RGFRCPLIDKVVFGQ--------- 440
D + G +V S + KW F+ I + FG
Sbjct: 460 YD-TFDGSDLRVLSGS-ISERIVDCIIRLPVKWETTTQFKATHI--LDFGPGGASGLGVL 515
Query: 441 TKKLLGGR-VRLILSGGAPLSPD 462
T + G VR+I++G ++PD
Sbjct: 516 THRNKDGTGVRVIVAGTLDINPD 538
Score = 28.5 bits (63), Expect = 7.5
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 20/79 (25%)
Query: 72 IRSISGP-QENHIRLI-RDGVDTMEKVLRYVVTRFSD-------------QRCL---GTR 113
+R +SG E + I R V E ++ T D R G R
Sbjct: 468 LRVLSGSISERIVDCIIRLPVK-WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Query: 114 QILAEEDEKQPNGRI-FKK 131
I+A + P+ FK+
Sbjct: 527 VIVAGTLDINPDDDYGFKQ 545
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 42.2 bits (100), Expect = 4e-04
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 289 IMYTSGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
++YTSGSTG PKGV L + T++ D DVF
Sbjct: 267 LLYTSGSTGAPKGVQHSTAGYLLGALL--TMRYTFD---THQEDVF 307
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 42.2 bits (100), Expect = 4e-04
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 289 IMYTSGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
I+YTSGSTG PKGV+ L + T K D P D++
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAAT--TFKYVFD---YHPGDIY 301
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.33
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 12/45 (26%)
Query: 108 RCLGTRQILAEEDEKQPNGRIF---KKYVMGDY------EWRSFN 143
C + E + G + V+ D EWR+F+
Sbjct: 26 ECKVYPPKIVERFSE---GDVVCALCGLVLSDKLVDTRSEWRTFS 67
Score = 28.9 bits (64), Expect = 3.0
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 343 ESVCLLCGVAIGYSTPLTMIDTSS 366
+ VC LCG+ + ++DT S
Sbjct: 42 DVVCALCGLVLSDK----LVDTRS 61
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 29.5 bits (67), Expect = 2.9
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 449 VRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV--------MHLND 495
++ ++ G P + + I+ L K +G+TE MH +
Sbjct: 208 LKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQEQNGMHFWE 262
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 29.2 bits (66), Expect = 3.3
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 449 VRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVM 491
+R+ + G P + D I+ + + YGL+E
Sbjct: 212 LRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVAS 254
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain
proteins (alpha and beta); 2.70A {Pyrococcus furiosus}
PDB: 2zag_A
Length = 497
Score = 29.0 bits (64), Expect = 3.9
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 9/123 (7%)
Query: 188 NIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS 247
++ ++ E+N + + KF I L ++ Y D+
Sbjct: 68 RDHILALFLARDGNISEVDFESWELNYFLVYLNDWAKFNAISYLGGAITRREYNGDESGR 127
Query: 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHD 307
T ++P + G + + Y ++++ + P V T
Sbjct: 128 GAVTT------LLPLP---RYGEKYVNLYAKVIVDVSNSSVKVTVGDRECDPLMVTFTPS 178
Query: 308 NMI 310
Sbjct: 179 GKT 181
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug
resistance regulator, virulence determinant,
transcriptional factors; 2.8A {Staphylococcus aureus}
SCOP: a.4.5.28
Length = 142
Score = 27.6 bits (62), Expect = 5.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 37 ITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVT 71
+TYP +L L W++ ++ KK ++ D +V+
Sbjct: 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVS 69
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 28.4 bits (64), Expect = 5.5
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 449 VRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTE 483
+++ + G P + ++ + + YGL+E
Sbjct: 214 LKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A
{Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A*
1gx3_A
Length = 278
Score = 28.0 bits (62), Expect = 7.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 444 LLGGRVRLILSGGAPLSPDTHELIKVCL 471
L GRV + + APL TH ++ V +
Sbjct: 93 RLSGRVVWMRADDAPLPAQTHNVLSVAV 120
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT,
xenobiotic metabolism, acyltransferase; 1.95A
{Pseudomonas aeruginosa} SCOP: d.3.1.5
Length = 299
Score = 27.7 bits (61), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 444 LLGGRVRLILSGGAPLSPDTHELIKVCL 471
LL RVR L APL+ +H ++++ L
Sbjct: 113 LLVARVRWGLPDDAPLTQQSHLMLRLYL 140
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 27.8 bits (62), Expect = 9.8
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 380 HPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRG 427
+P + + L+ Y + F+ + F ++ K
Sbjct: 428 YPDDIVSNDNKLNNEYLEL--NYKEDEYFENIIQNLKFSQSKQLKKLR 473
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,621,527
Number of extensions: 471544
Number of successful extensions: 1188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1142
Number of HSP's successfully gapped: 84
Length of query: 504
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 406
Effective length of database: 3,965,535
Effective search space: 1610007210
Effective search space used: 1610007210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)