RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6874
(504 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 139 bits (350), Expect = 7e-36
Identities = 62/376 (16%), Positives = 123/376 (32%), Gaps = 60/376 (15%)
Query: 128 IFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQ 187
I++ + S+ +++ + F L LG + V I+ E +A AC +
Sbjct: 92 IWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 151
Query: 188 NIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT--------PRVSTLI 239
I+ EA+A I ++ +VIT + + R+I P V+++
Sbjct: 152 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVE 211
Query: 240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTP 299
++ + ++++G ++ I K E ++ +D I+YTSGSTG P
Sbjct: 212 HVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE----HQPEAMNAEDPLFILYTSGSTGKP 267
Query: 300 KGVVLTHDNMI-STLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE-SVCLLCGVAIGYST 357
KGV+ T + F P D++ + V L CG
Sbjct: 268 KGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 327
Query: 358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAF 417
+ T +++ + L P + + + +
Sbjct: 328 GVPNWPTPARMCQ----VVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR---------- 373
Query: 418 EYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK--- 474
+R++ S G P++P+ E + ++
Sbjct: 374 -----------------------------SSLRILGSVGEPINPEAWEWYWKKIGKEKCP 404
Query: 475 VIQGYGLTETTSCATV 490
V+ + TET
Sbjct: 405 VVDTWWQTETGGFMIT 420
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 114 bits (285), Expect = 8e-28
Identities = 66/384 (17%), Positives = 109/384 (28%), Gaps = 67/384 (17%)
Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
L + + G+ ++ +V A GLR+LG V
Sbjct: 15 DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 74
Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
+ A A + T L + IA+ +N E +++ +LLP I
Sbjct: 75 HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 134
Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
V + M+++ + E + + YT+
Sbjct: 135 TVQHFVVMDEKAPEGYLAYEEALGEEADP----------------VRVPERAACGMAYTT 178
Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVH--IEPNDVFLGYLPLAHVFELLSESVCLLCGV 351
G+TG PKGVV +H ++ A S + DV L +P+ HV L G
Sbjct: 179 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 238
Query: 352 AIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA 411
P + ++ G T VP A
Sbjct: 239 KQVLPGPRLDPASLVELFDGEG-------VTFTAGVP------------------TVWLA 273
Query: 412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL 471
L + + +R ++ GG+ +
Sbjct: 274 LADYLESTGHRLK-----------------------TLRRLVVGGSAAPRSLIARFERMG 310
Query: 472 CEKVIQGYGLTETTSCATVMHLND 495
E V QGYGLTET+ +
Sbjct: 311 VE-VRQGYGLTETSPVVVQNFVKS 333
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 113 bits (283), Expect = 3e-27
Identities = 61/387 (15%), Positives = 111/387 (28%), Gaps = 54/387 (13%)
Query: 121 EKQPNGR--IFKKYVMGDYEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVVIFAETRAEW 177
K PN + IF+ G ++ ++ +E + L S+G V ++ E
Sbjct: 70 LKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA 129
Query: 178 MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNI---LKLTPR 234
+I A + ++A ++ IN+ + +VITT + + I +
Sbjct: 130 IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA 189
Query: 235 VSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSG 294
+ + L T N + + Y +P +D ++YTSG
Sbjct: 190 LRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSG 249
Query: 295 STGTPKGVVLTHDNMI-STLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE-SVCLLCGVA 352
STG PKGV + + L DVF + + LL G A
Sbjct: 250 STGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCA 309
Query: 353 IGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRAL 412
S+ T P L + + + S
Sbjct: 310 TLVFEGTPAYPNYSRYWD----IIDEHKVTQFYVAPTALRLLKRAGDSYIENHSL----- 360
Query: 413 FAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC 472
+R + S G P++ + E +
Sbjct: 361 ----------------------------------KSLRCLGSVGEPIAAEVWEWYSEKIG 386
Query: 473 EK---VIQGYGLTETTSCATVMHLNDM 496
+ ++ Y TE+ S +
Sbjct: 387 KNEIPIVDTYWQTESGSHLVTPLAGGV 413
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 95.0 bits (235), Expect = 2e-21
Identities = 63/356 (17%), Positives = 107/356 (30%), Gaps = 52/356 (14%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
++ + + + + ++ G H +V+ +E ++ + + V E
Sbjct: 49 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 108
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
+ + +N ++ +V + L K N+ K P + +I M+ + TD F+ V
Sbjct: 109 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK---TDYQGFQSMYTFV 165
Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
+ G S K A+IM +SGSTG PKGV L H D +
Sbjct: 166 --TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 223
Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLH 380
L + L + + +
Sbjct: 224 FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE----------------- 266
Query: 381 PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQ 440
L L + + K +
Sbjct: 267 ------EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS---------------- 304
Query: 441 TKKLLGGRVRLILSGGAPLSPDTHE-LIKVCLCEKVIQGYGLTETTSCATVMHLND 495
+ I SGGAPLS + E + K + QGYGLTETTS + D
Sbjct: 305 -------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 353
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 86.5 bits (213), Expect = 1e-18
Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 33/260 (12%)
Query: 104 FSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEP 163
+ + + Q+ E+ K+PN + V + + +++++N +A + G
Sbjct: 19 YPRDKTIH--QLFEEQVSKRPN-NVA--IVCENEQL-TYHELNVKANQLARIFIEKGIGK 72
Query: 164 RHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLP 223
V I E + I A K V I +E I + +++++ +++T L+
Sbjct: 73 DTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH 132
Query: 224 KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP 283
NI T+ P
Sbjct: 133 LIHNIQFNGQVEIFEEDTIKIREGTNLH---------------------------VPSKS 165
Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
D A ++YTSG+TG PKG +L H + + F +++++ D + ++ +
Sbjct: 166 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 225
Query: 344 SVCLLCGVAIGYSTPLTMID 363
+ LL G ++ T+ D
Sbjct: 226 FMALLTGASLYIILKDTIND 245
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 81.2 bits (199), Expect = 6e-17
Identities = 57/394 (14%), Positives = 107/394 (27%), Gaps = 73/394 (18%)
Query: 108 RCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV 167
+ + ++L + P+ + ++ EA L + G P+ V
Sbjct: 2 QTVN--EMLRRAATRAPD-HCALAVPARGLRL-THAELRARVEAVAARLHADGLRPQQRV 57
Query: 168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRN 227
+ A A+ +IA A + + L +A I E+ + + + +
Sbjct: 58 AVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI--AVGRQVAD 115
Query: 228 ILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTA 287
+ + + +I++ D + + ++ IE P A
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDP-------------------QREPAQPA 156
Query: 288 IIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV--HIEPNDVFLGYLPLAHVFELLSESV 345
I YTSG+TG PK ++ S + S V ++V LG +PL HV + V
Sbjct: 157 FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLV 216
Query: 346 CLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA 405
L
Sbjct: 217 AALALDGTYVVVEEFRPV------------------------------------------ 234
Query: 406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHE 465
AL E + L +R + GA + E
Sbjct: 235 ----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290
Query: 466 LIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNI 499
+ L + + YG TE + + +
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEM 324
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 74.6 bits (182), Expect = 7e-15
Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 19/235 (8%)
Query: 94 EKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFG 153
E Y G +L + K + RI G+ W S+ +++ A+
Sbjct: 11 ELAETYRKNGCWAGETFG--DLLRDRAAKYGD-RIA--ITCGNTHW-SYRELDTRADRLA 64
Query: 154 KGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVN 213
G + LG + + VV+ E+ A F+ V + I + E
Sbjct: 65 AGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAA 124
Query: 214 IVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESG 273
I D F S L +++ + + + F ++
Sbjct: 125 AYI-IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHT------------ 171
Query: 274 SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF 328
+ D A + + GSTG K + THD+ I +LK + ++ + V+
Sbjct: 172 EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVY 226
>d1ogmx1 b.133.1.1 (X:3-201) Dextranase, N-terminal domain
{Penicillium minioluteum [TaxId: 28574]}
Length = 199
Score = 27.0 bits (59), Expect = 4.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 142 FNQVNDEAEAFGKGLRSLGQEPRHNVVIFAE 172
+ ++D E G +G EP + +VIFA
Sbjct: 167 YTFLSDGNEYVTSGGSVVGVEPTNALVIFAS 197
>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase
{Mycobacterium smegmatis [TaxId: 1772]}
Length = 273
Score = 27.3 bits (60), Expect = 4.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 444 LLGGRVRLILSGGAPLSPDTHELIKVCL 471
L GRV + + APL TH ++ V +
Sbjct: 88 RLSGRVVWMRADDAPLPAQTHNVLSVAV 115
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 277
Score = 26.9 bits (59), Expect = 5.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 425 KRGFRCPLIDKVVF------GQTKKLLGGRVRLILSGGAPLSPDTHELIKV 469
RG C ++ + G +LL RVR L APL+ +H ++++
Sbjct: 68 SRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRL 118
>d1n7za_ b.127.1.1 (A:) Baseplate structural protein gp8
{Bacteriophage T4 [TaxId: 10665]}
Length = 328
Score = 26.9 bits (59), Expect = 6.1
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 270 SESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVF 328
S + + +PP P D+ GV +M+ T+K + P +
Sbjct: 42 SSNENEVGFAPPYPTDS------------VLGVTDMWTHMMGTVKVLPSMLDAVIPRRDW 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,833,428
Number of extensions: 86981
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 19
Length of query: 504
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,185,626
Effective search space: 492034790
Effective search space used: 492034790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)