Query psy6875
Match_columns 201
No_of_seqs 118 out of 1277
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 20:38:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 99.9 1.3E-27 4.4E-32 196.5 8.2 123 45-200 151-279 (297)
2 2lck_A Mitochondrial uncouplin 99.9 1.7E-27 5.9E-32 196.4 7.7 125 45-200 142-267 (303)
3 1okc_A ADP, ATP carrier protei 99.9 9.3E-27 3.2E-31 191.4 8.2 130 45-201 48-183 (297)
4 2lck_A Mitochondrial uncouplin 99.9 1.1E-26 3.8E-31 191.6 7.7 125 45-201 45-174 (303)
5 2acm_A Mucin-1; auto-catalytic 44.7 4.4 0.00015 24.3 -0.1 19 173-191 41-59 (66)
6 2a3d_A Protein (de novo three- 23.5 64 0.0022 19.0 2.5 28 156-183 10-37 (73)
7 3vjj_A P9-1; 3.00A {Rice black 17.0 69 0.0024 25.5 2.2 35 149-187 274-308 (368)
8 3i71_A Ethanolamine utilizatio 12.1 88 0.003 18.6 1.2 29 136-164 11-39 (68)
9 1yro_A Alpha-lactalbumin; Arg2 11.2 1.3E+02 0.0045 20.6 2.1 16 174-189 88-103 (123)
10 2dat_A Possible global transcr 11.1 2.3E+02 0.0077 19.0 3.3 29 151-179 54-82 (123)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.94 E-value=1.3e-27 Score=196.50 Aligned_cols=123 Identities=19% Similarity=0.325 Sum_probs=109.3
Q ss_pred CCCCcHHHHHHHHHHhhhHHHhhhccchhhchHhHHHHHchhhHHHHhHHHhhcchhhhhhHhhhhhcccCCCcccccCC
Q psy6875 45 NKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYTRELSIYERFVAGSLAGGVSLNVPD 124 (201)
Q Consensus 45 ~~~~~~~~~~~~i~~~eGi~gly~G~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (201)
..|.++++++++|+++||++|||+|+.|.+++.++..+++|..||.+++.+...
T Consensus 151 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-------------------------- 204 (297)
T 1okc_A 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-------------------------- 204 (297)
T ss_dssp CSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------------------------
T ss_pred cCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--------------------------
Confidence 468999999999999999999999999999999999999999999988765211
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHhhhcCchhHHHHHHhhcCC------CCCCHHHHHHHHHHhcCcccccccccccc
Q psy6875 125 DFTAKEMLTGMWWRHLVAGGVAGAVSRTCTAPLDRLKVYLQVHGN------KTTGIKKCLLHLLHEGGFLSLWRGNGSKI 198 (201)
Q Consensus 125 ~~~~~~~~~~~~~~~~~aG~~ag~~a~~it~Pldviktr~Q~~~~------~~~~~~~~~~~i~r~eG~~glyrG~~~~l 198 (201)
...+.+..+++|++||++++++++|+||||+|||++.. .|.++.+|+++|+++||++|||||+.+++
T Consensus 205 -------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~ 277 (297)
T 1okc_A 205 -------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277 (297)
T ss_dssp -------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHH
T ss_pred -------CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHH
Confidence 01234567899999999999999999999999999853 47899999999999999999999999998
Q ss_pred cc
Q psy6875 199 KE 200 (201)
Q Consensus 199 lR 200 (201)
+|
T Consensus 278 ~r 279 (297)
T 1okc_A 278 LR 279 (297)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.94 E-value=1.7e-27 Score=196.40 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=110.9
Q ss_pred CCCCcHHHHHHHHHHhhhHHHhhhccchhhchHhHHHHHchhhHHHHhHHHhhcchhhhhhHhhhhhcccCCCcccccCC
Q psy6875 45 NKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYTRELSIYERFVAGSLAGGVSLNVPD 124 (201)
Q Consensus 45 ~~~~~~~~~~~~i~~~eGi~gly~G~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (201)
..|.++++++++|+++||++|||+|+.|.+++.++..+++|..||.+++.+....
T Consensus 142 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~------------------------- 196 (303)
T 2lck_A 142 RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN------------------------- 196 (303)
T ss_dssp SSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-------------------------
T ss_pred CCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 3689999999999999999999999999999999999999999999888764220
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHhhhcCchhHHHHHHhhcCC-CCCCHHHHHHHHHHhcCcccccccccccccc
Q psy6875 125 DFTAKEMLTGMWWRHLVAGGVAGAVSRTCTAPLDRLKVYLQVHGN-KTTGIKKCLLHLLHEGGFLSLWRGNGSKIKE 200 (201)
Q Consensus 125 ~~~~~~~~~~~~~~~~~aG~~ag~~a~~it~Pldviktr~Q~~~~-~~~~~~~~~~~i~r~eG~~glyrG~~~~llR 200 (201)
....+.+..+++|++||++++++++|+|+||+|||++.. .|.++++|+++|+++||++|||||+.++++|
T Consensus 197 ------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 267 (303)
T 2lck_A 197 ------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267 (303)
T ss_dssp ------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHH
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHH
Confidence 001234568999999999999999999999999999854 5889999999999999999999999999987
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.93 E-value=9.3e-27 Score=191.37 Aligned_cols=130 Identities=28% Similarity=0.526 Sum_probs=111.1
Q ss_pred CCCCcHHHHHHHHHHhhhHHHhhhccchhhchHhHHHHHchhhHHHHhHHHhhcchhhhhhHhhhhhcccCCCcccccCC
Q psy6875 45 NKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYTRELSIYERFVAGSLAGGVSLNVPD 124 (201)
Q Consensus 45 ~~~~~~~~~~~~i~~~eGi~gly~G~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (201)
..|+++++++++++++||++|||||+.+++++.++..+++|..|+.+++.+....
T Consensus 48 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~------------------------- 102 (297)
T 1okc_A 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV------------------------- 102 (297)
T ss_dssp GSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred cccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------------
Confidence 4689999999999999999999999999999999999999999999988653210
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHhhhcCchhHHHHHHhhcCC------CCCCHHHHHHHHHHhcCcccccccccccc
Q psy6875 125 DFTAKEMLTGMWWRHLVAGGVAGAVSRTCTAPLDRLKVYLQVHGN------KTTGIKKCLLHLLHEGGFLSLWRGNGSKI 198 (201)
Q Consensus 125 ~~~~~~~~~~~~~~~~~aG~~ag~~a~~it~Pldviktr~Q~~~~------~~~~~~~~~~~i~r~eG~~glyrG~~~~l 198 (201)
........+.+..+++|++||++++++++|+|+||+|||++.. .|.++.+|+++|+++||++|||||+.+++
T Consensus 103 --~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l 180 (297)
T 1okc_A 103 --DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180 (297)
T ss_dssp --CTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHH
T ss_pred --CcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHH
Confidence 0000111235678999999999999999999999999999842 57899999999999999999999999998
Q ss_pred ccC
Q psy6875 199 KEQ 201 (201)
Q Consensus 199 lR~ 201 (201)
+|+
T Consensus 181 ~~~ 183 (297)
T 1okc_A 181 QGI 183 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.93 E-value=1.1e-26 Score=191.59 Aligned_cols=125 Identities=18% Similarity=0.341 Sum_probs=111.5
Q ss_pred CCCCcHHHHHHHHHHhhhHHHhhhccchhhchHhHHHHHchhhHHHHhHHHhhcchhhhhhHhhhhhcccCCCcccccCC
Q psy6875 45 NKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYTRELSIYERFVAGSLAGGVSLNVPD 124 (201)
Q Consensus 45 ~~~~~~~~~~~~i~~~eGi~gly~G~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (201)
..|+++++++++++++||+++||+|+.+++++.++..+++|..|+.+++.+... +
T Consensus 45 ~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~-------------------------~ 99 (303)
T 2lck_A 45 AQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-------------------------S 99 (303)
T ss_dssp SSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCC-------------------------C
T ss_pred CCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------C
Confidence 468999999999999999999999999999999999999999999998877421 0
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHhhhcCchhHHHHHHhhcCC-----CCCCHHHHHHHHHHhcCccccccccccccc
Q psy6875 125 DFTAKEMLTGMWWRHLVAGGVAGAVSRTCTAPLDRLKVYLQVHGN-----KTTGIKKCLLHLLHEGGFLSLWRGNGSKIK 199 (201)
Q Consensus 125 ~~~~~~~~~~~~~~~~~aG~~ag~~a~~it~Pldviktr~Q~~~~-----~~~~~~~~~~~i~r~eG~~glyrG~~~~ll 199 (201)
. ..+.+..+++|++||++++++++|+|+||+|||++.. .|.++.+|+++|+++||++|||||+.++++
T Consensus 100 ----~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~ 172 (303)
T 2lck_A 100 ----E---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVA 172 (303)
T ss_dssp ----S---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ----c---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHH
Confidence 0 1235678999999999999999999999999999864 578999999999999999999999999988
Q ss_pred cC
Q psy6875 200 EQ 201 (201)
Q Consensus 200 R~ 201 (201)
|+
T Consensus 173 ~~ 174 (303)
T 2lck_A 173 RN 174 (303)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=44.70 E-value=4.4 Score=24.32 Aligned_cols=19 Identities=37% Similarity=0.738 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHhcCccccc
Q psy6875 173 GIKKCLLHLLHEGGFLSLW 191 (201)
Q Consensus 173 ~~~~~~~~i~r~eG~~gly 191 (201)
++.+.+.+||+++++.||+
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 4788899999999999986
No 6
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=23.48 E-value=64 Score=19.00 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=16.0
Q ss_pred chhHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy6875 156 PLDRLKVYLQVHGNKTTGIKKCLLHLLH 183 (201)
Q Consensus 156 Pldviktr~Q~~~~~~~~~~~~~~~i~r 183 (201)
-+..||+|+|..++.--.+...-..|..
T Consensus 10 rlaaiktrlqalggseaelaafekeiaa 37 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAA 37 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3456889999987643334433344433
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=17.02 E-value=69 Score=25.50 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHhhhcCchhHHHHHHhhcCCCCCCHHHHHHHHHHhcCc
Q psy6875 149 VSRTCTAPLDRLKVYLQVHGNKTTGIKKCLLHLLHEGGF 187 (201)
Q Consensus 149 ~a~~it~Pldviktr~Q~~~~~~~~~~~~~~~i~r~eG~ 187 (201)
++++=-+|||.+|-.++..- ++...+.+.++++|+
T Consensus 274 LaTFdnypfdllRfqL~Sli----stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLI----STPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCC----CCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhhc----cChHHHHHHHHhcCc
Confidence 45566899999988776653 356778888888883
No 8
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=12.12 E-value=88 Score=18.56 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCchhHHHHHH
Q psy6875 136 WWRHLVAGGVAGAVSRTCTAPLDRLKVYL 164 (201)
Q Consensus 136 ~~~~~~aG~~ag~~a~~it~Pldviktr~ 164 (201)
.+..+.-|+.||-++.-+-.|+|..|..+
T Consensus 11 ll~s~~QGMTaGEVAA~f~w~Le~ar~aL 39 (68)
T 3i71_A 11 LLTSVRQGMTAGEVAAHFGWPLEKARNAL 39 (68)
T ss_dssp HHHHCTTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHhCCcHHHHHHHH
Confidence 34555668889999999999999998776
No 9
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=11.25 E-value=1.3e+02 Score=20.58 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCccc
Q psy6875 174 IKKCLLHLLHEGGFLS 189 (201)
Q Consensus 174 ~~~~~~~i~r~eG~~g 189 (201)
-..|+++|++++|+.+
T Consensus 88 ~i~CAk~I~~~~G~~a 103 (123)
T 1yro_A 88 DIACAKKILAIKGIDY 103 (123)
T ss_dssp HHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhcCcch
Confidence 5889999999999764
No 10
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.15 E-value=2.3e+02 Score=18.96 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=20.8
Q ss_pred hhhcCchhHHHHHHhhcCCCCCCHHHHHH
Q psy6875 151 RTCTAPLDRLKVYLQVHGNKTTGIKKCLL 179 (201)
Q Consensus 151 ~~it~Pldviktr~Q~~~~~~~~~~~~~~ 179 (201)
.+|..|+|.-.++--+....|.++.++..
T Consensus 54 ~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~ 82 (123)
T 2dat_A 54 ELIRKPVDFKKIKERIRNHKYRSLGDLEK 82 (123)
T ss_dssp HHCSSCCCHHHHHHHHTTTCCCSHHHHHH
T ss_pred HHcCCCCCHHHHHHHHhCCCCCCHHHHHH
Confidence 36789998777777777778888655544
Done!