RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6875
(201 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 119 bits (301), Expect = 3e-33
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 33/159 (20%)
Query: 41 GVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYT 100
+ GI C++ + E GFLS WRGN NV++ P AL F ++ K++ G
Sbjct: 44 ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD 103
Query: 101 RELSIYERFVAGSLAGGVSLNVPDDFTAKEMLTGMWWRHLVAGGVAGAVSRTCTAPLDRL 160
R + R+ AG+LA +GG AGA S PLD
Sbjct: 104 RH-KQFWRYFAGNLA--------------------------SGGAAGATSLCFVYPLDFA 136
Query: 161 KVYLQVHGNKT------TGIKKCLLHLLHEGGFLSLWRG 193
+ L K TG+ C+ + G L++G
Sbjct: 137 RTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQG 175
Score = 97.3 bits (243), Expect = 7e-25
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 136 WWRHLVAGGVAGAVSRTCTAPLDRLKVYLQVHG--------NKTTGIKKCLLHLLHEGGF 187
+ + +AGGVA A+S+T AP++R+K+ LQV + GI C++ + E GF
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 188 LSLWRGNG 195
LS WRGN
Sbjct: 67 LSFWRGNL 74
Score = 68.4 bits (168), Expect = 3e-14
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 39/157 (24%)
Query: 48 TGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYTRELSIYE 107
TG+ C+ + G L++G ++V I A F Y+ AK ++ + I
Sbjct: 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIV 211
Query: 108 RFVAGSLAGGVSLNVPDDFTAKEMLTGMWWRHLVAGGVAGAVSRTCTAPLDRLKVYLQV- 166
+ + AV+ + P D ++ + +
Sbjct: 212 SW-------------------------------MIAQTVTAVAGLVSYPFDTVRRRMMMQ 240
Query: 167 -----HGNKTTGIKKCLLHLLHEGGFLSLWRGNGSKI 198
TG C + + G + ++G S +
Sbjct: 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277
Score = 47.2 bits (113), Expect = 8e-07
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 43 HGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLI 95
TG C + + G + ++G NVL+ A + Y++ K+ +
Sbjct: 246 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIKKFV 297
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 65.0 bits (159), Expect = 5e-13
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 37/166 (22%)
Query: 33 GGREGEELGVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAK 92
G +G + G+ +L ++ G SL+ G + + ++++ Y+ K
Sbjct: 33 GESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92
Query: 93 RLIRGNYTRELSIYERFVAGSLAGGVSLNVPDDFTAKEMLTGMWWRHLVAGGVAGAVSRT 152
+ + I R +AGS G +
Sbjct: 93 QFYT-KGSEHAGIGSRLLAGSTTGAL------------------------AVAVA----- 122
Query: 153 CTAPLDRLKVYLQVHGN-----KTTGIKKCLLHLLHEGGFLSLWRG 193
P D +KV Q + + + E G LW+G
Sbjct: 123 --QPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Score = 64.2 bits (157), Expect = 1e-12
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 32/142 (22%)
Query: 53 CLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYTRELSIYERFVAG 112
+ E G LW+G NV + A + + + Y+ K +
Sbjct: 150 AYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA-------------- 195
Query: 113 SLAGGVSLNVPDDFTAKEMLTGMWWRHLVAGGVAGAVSRTCTAPLDRLKVYLQV-HGNKT 171
+ DD H + AG + +P+D +K +
Sbjct: 196 -------NLMTDD----------LPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238
Query: 172 TGIKKCLLHLLHEGGFLSLWRG 193
C L +L + G + ++G
Sbjct: 239 HSAGHCALTMLRKEGPRAFYKG 260
Score = 51.1 bits (123), Expect = 4e-08
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 139 HLVAGGVAGAVSRTCTAPLDRLKVYLQVHG-----------NKTTGIKKCLLHLLHEGGF 187
+ G A ++ T PLD KV LQ+ G + G+ +L ++ G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 188 LSLWRG 193
SL+ G
Sbjct: 64 RSLYNG 69
Score = 45.0 bits (107), Expect = 4e-06
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 43 HGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYTRE 102
+ C L +L + G + ++G + L++ + + F+ YEQ KR + Y
Sbjct: 234 ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSR 293
Query: 103 LSIY 106
+ +
Sbjct: 294 EAPF 297
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.005
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 4 IAIERKISEE--------EEEKKE-EEKEKEEEKKKKE 32
IA ++++E EE++K +E + + ++E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE 111
Score = 32.8 bits (74), Expect = 0.037
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 18/49 (36%)
Query: 6 IERKISEEEEEKKEEE------KEKEE---------EKKKKEGGREGEE 39
++ + + E+E K+ EE EK K R ++
Sbjct: 98 LQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN-NRIADK 143
Score = 25.5 bits (55), Expect = 9.8
Identities = 4/31 (12%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 8 RKISEEEEEKKEEEKEKEEEKKKKEGGREGE 38
++ SE+ E+ K + ++ ++ + +
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQ---PDAD 152
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 30.2 bits (69), Expect = 0.40
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 9 KISEEEEEKKEEEKEKEEEKKKKEGGREGEELG 41
K+ EE +E E ++ ++ K E EE+G
Sbjct: 170 KVYEEIDEVMYEARQAVVDQAKLE-----EEMG 197
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS
motif, autoproteolytic fold, extra signaling protein;
HET: NAG FUL; 2.30A {Homo sapiens}
Length = 382
Score = 29.5 bits (64), Expect = 0.68
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 122 VPDDFTAKEMLTGMWWRHLVAGGVA---------GAVSRTCTAPLDRLKVYLQVHGNKTT 172
P + ++ L M W+ AG +A G SR C+ L + + Q +
Sbjct: 15 APYEICPEDYLMSMVWKRTPAGDLAFNQCPLNATGTTSRRCSLSLHGVAFWEQPSFARCI 74
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.5 bits (66), Expect = 0.78
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 4 IAIERKISE-EEEEKKEEEKEKEEEKKKKEGGREGEEL 40
I+ K+ E E+E++ E + K +K K++ G+E EE+
Sbjct: 93 RGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEV 130
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.4 bits (65), Expect = 0.81
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKEGGREGEEL 40
E + +E + + + + + + +GG G +
Sbjct: 328 ELRRMQEMIARMQAQMQMQMQGGDGDGGALGHHV 361
Score = 28.3 bits (62), Expect = 1.7
Identities = 4/27 (14%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 7 ERKISEEEEE-KKEEEKEKEEEKKKKE 32
++ + E+E E ++ +E + + +
Sbjct: 319 DQILLEKEAELRRMQEMIARMQAQMQM 345
Score = 26.7 bits (58), Expect = 6.0
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKEGGRE 36
E ++ +E + + + + + +G
Sbjct: 326 EAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.3 bits (65), Expect = 0.87
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 6 IERKISEEEEEKKEEEKEKEEEKKKKEGGREGEEL 40
I+R + ++ K+ K E R L
Sbjct: 222 IQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTAL 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.91
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 21/108 (19%)
Query: 89 EQAKRLIRGNYTRELSIYERFVAGSLA---GGVSLNVPDDFTAKEMLTGMW--WRHLVAG 143
RL +++ + ++FV L + + + M+T M+ R +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 144 GVA----GAVSRTCTAPLDRLKVYLQ---------VHGNKTTGIKKCL 178
VSR P +L+ L + G +G K +
Sbjct: 122 DNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWV 166
Score = 28.7 bits (63), Expect = 1.5
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 54 LLHLLHEGGFLSLWRGNGINVLKIA---PESALKFMAYEQAKR 93
+L L + +L ++L+IA + A+ A++Q +R
Sbjct: 548 ILDFLPKIE-ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 76 KIAPESALKFMAYEQAKRL-IRGNYTRE 102
K+ +++LK A + A L I T E
Sbjct: 24 KL--QASLKLYADDSAPALAI--KATME 47
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.10A
{Escherichia coli} SCOP: c.56.5.7
Length = 335
Score = 28.9 bits (64), Expect = 1.2
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 40 LGVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIA-PESALKFMAYEQAKRLIRGN 98
G+HGN+T ++ +L L ++ + P A +Q KR +
Sbjct: 55 AGIHGNETAPVE--MLDALLGAISHGEIPLRWRLLVILGNPP------ALKQGKRYCHSD 106
Query: 99 YTR 101
R
Sbjct: 107 MNR 109
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 28.3 bits (64), Expect = 1.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 3 PIAIERKISEEEEEKKEEEKEKEEEKKKKEGGREGEE 39
PI + +E EE EEE+ +EEK+ + EE
Sbjct: 210 PIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEE 246
Score = 26.8 bits (60), Expect = 4.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKEGGREGEE 39
+ EEEE +EEKE +++ E E ++
Sbjct: 220 TVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKK 252
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 28.2 bits (63), Expect = 1.6
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 11 SEEEEEKKEEEKEKEEEKKKKEGGREGEE 39
E + EE K + E + +
Sbjct: 207 VLEGDASLEEVKAEASEDNAGTDSEDNSD 235
Score = 28.2 bits (63), Expect = 1.8
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 11 SEEEEEKKEEEKEKEEEKKKKEGGREGEE 39
E E E + EE K + G +
Sbjct: 201 EEAAEAVLEGDASLEEVKAEASEDNAGTD 229
Score = 27.8 bits (62), Expect = 2.2
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 9 KISEEEEEKKEEEKEKEEEKKKKEGGREGEELGVHGNKTTGIKK 52
+++ EE E + + + E E E + G+ + K
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVK 218
Score = 26.6 bits (59), Expect = 6.0
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 11 SEEEEEKKEEEKEKEEEKKKKEGGREGEE 39
+ E + EE + E + E
Sbjct: 206 AVLEGDASLEEVKAEASEDNAGTDSEDNS 234
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 28.4 bits (63), Expect = 1.6
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 2 TPIAIERKISEEEEEKKEEEKEKEE 26
P + ++ EE+ + ++ KE++E
Sbjct: 498 IPQQLVERLQEEKRIEAQKRKERQE 522
Score = 26.5 bits (58), Expect = 7.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKK 31
+ I ++ E+ +EEK E +K+K+
Sbjct: 495 DHDIPQQLVERLQEEKRIEAQKRKE 519
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like
domain, UBL, ubiquitin specific protease, HOST-virus
interaction, nucleus, protease; NMR {Homo sapiens}
Length = 130
Score = 27.5 bits (61), Expect = 1.7
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 2 TPIAIERKISEEEEEKKEEEKEKEEE 27
+P + ++ EE+ + ++ KE++E
Sbjct: 2 SPQQLVERLQEEKRIEAQKRKERQEA 27
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 27.3 bits (61), Expect = 2.2
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 10 ISEEEEEK--KEEEKEKEEEKKKKE 32
+S+++ E KE EK E+ K+KE
Sbjct: 118 LSKDQIENMIKEAEKNAAEDAKRKE 142
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
ACY2_RAT, STRU genomics, PSI, protein structure
initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Length = 312
Score = 27.9 bits (61), Expect = 2.3
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 41 GVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIA-PESALKFMAYEQAKRLIRGNY 99
G HGN+ TG+ + H L G + R I P A E+ R I +
Sbjct: 18 GTHGNELTGV-FLVTHWLKNGAEVH--RAGLEVKPFITNPR------AVEKCTRYIDCDL 68
Query: 100 TR 101
R
Sbjct: 69 NR 70
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 27.6 bits (62), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 10 ISEEEEEK--KEEEKEKEEEKKKKE 32
+S+++ E K EK EE+++KKE
Sbjct: 138 LSKDDIENMVKNAEKYAEEDRRKKE 162
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 27.9 bits (62), Expect = 2.5
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 2 TPIAIERKISEEEEEKKEEEKEKEE 26
P + ++ EE+ + ++ KE++E
Sbjct: 329 IPQQLVERLQEEKRIEAQKRKERQE 353
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 27.7 bits (62), Expect = 2.8
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 9 KISEEEEEKKEEEKEKEEEK 28
++ E+EEEKK++E++K + +
Sbjct: 260 ELPEDEEEKKKQEEKKTKFE 279
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 27.2 bits (60), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 12 EEEEEKKEEEKEKEEEKKKKEGGREGEE 39
EE E++ E+ EE ++E E E
Sbjct: 207 PEEVEQQVAEEATTEEAGEEEAKEEVTE 234
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 9 KISEEEEEKKEEEKEKEEEK 28
E EEEK++ E+EK +
Sbjct: 276 HFEESEEEKQQREEEKAACE 295
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 27.4 bits (61), Expect = 3.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 AIERKISEEEEEKKEEEKEKEEEKKKKE 32
A++ E E+K + +EK +KE
Sbjct: 308 AVKENQKRRETEEKMRRAKLAKEKAEKE 335
Score = 25.9 bits (57), Expect = 9.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKK 31
+K E EE+ + + KE+ +K++
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKER 336
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 27.5 bits (60), Expect = 3.2
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 11 SEEEEEKKEEEKEKEEEKKKKEGGREG 37
SE++ + + +E +++ E +
Sbjct: 317 SEDDADADDAAEEADDDDDDDEDAGDA 343
Score = 27.1 bits (59), Expect = 4.5
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 11 SEEEEEKKEEEKEKEEEKKKKEGGREGEELG 41
+ E++ ++ +E + + G+ LG
Sbjct: 315 TASEDDADADDAAEEADDDDDDDEDAGDALG 345
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 27.2 bits (59), Expect = 3.3
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 13 EEEEKKEEEKEKEEEKKKKEGGREGEE 39
EE+ K+ +E + + ++E + ++
Sbjct: 107 EEQRKRLQELDAASKVMEQEWREKAKK 133
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 27.2 bits (60), Expect = 3.3
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 6 IERKISEEEEE-KKEEEKEKEEEKKKKEGGR 35
+E E + +KE K+ ++ K + G+
Sbjct: 148 VEIFAQEVAAKVRKEAPKDAAKKVPKTKKGK 178
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 26.8 bits (60), Expect = 3.4
Identities = 6/26 (23%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 9 KISEEEEEK--KEEEKEKEEEKKKKE 32
++S E+ E+ + +K +++ +KE
Sbjct: 118 RLSPEDIERMINDADKFAADDQAQKE 143
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.4 bits (61), Expect = 3.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 6 IERKISEEEEEKKEEEKEKEEEKKKKE 32
E+ +SE +E+ + EKEE ++
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIH 1047
Score = 26.6 bits (59), Expect = 7.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 4 IAIERKISEEEEEKKEEEKEKEEEKKKKE 32
I +E KI + + + E+ KE + +K
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 26.8 bits (60), Expect = 3.9
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 11 SEEEEEK--KEEEKEKEEEKKKKE 32
+E+E +K ++ E E ++K +E
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEE 143
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 27.2 bits (61), Expect = 4.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 IAIERKISEEEEEKKEEEKEKEEEK 28
I + ++ E +EEK E EKE +E +
Sbjct: 252 ITKDFELEETDEEKAEREKEIKEYE 276
Score = 26.5 bits (59), Expect = 6.8
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 12 EEEEEKKEEEKEKEEEKKKK 31
+ E E+ +EEK + E++ K+
Sbjct: 255 DFELEETDEEKAEREKEIKE 274
Score = 26.1 bits (58), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 13 EEEEKKEEEKEKEEEKKKKEG 33
E EE EE+ E+E+E K+ E
Sbjct: 257 ELEETDEEKAEREKEIKEYEP 277
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 26.8 bits (60), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 4 IAIERKISEEEEEKKEEEKEKEE 26
I + ++ E +EEK E EKE +E
Sbjct: 252 ITKDFELEETDEEKAEREKEIKE 274
Score = 26.4 bits (59), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 13 EEEEKKEEEKEKEEEKKKKEG 33
E EE EE+ E+E+E K+ E
Sbjct: 257 ELEETDEEKAEREKEIKEYEP 277
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.0 bits (60), Expect = 4.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 11 SEEEEEKKEEEKEKEEEKKKK 31
+ E E+ +EEK + E++ K+
Sbjct: 526 KDFELEETDEEKAEREKEIKE 546
Score = 26.3 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 IAIERKISEEEEEKKEEEKEKEEEK 28
I + ++ E +EEK E EKE +E +
Sbjct: 524 ITKDFELEETDEEKAEREKEIKEYE 548
Score = 26.3 bits (58), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 3 PIAIERKISEEEEEKKEEEKEKEEEKKKKEGGREGEE 39
PI + E+E EE++K+EEKK +E E ++
Sbjct: 204 PIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDK 240
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.1 bits (60), Expect = 4.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 4 IAIERKISEEEEEKKEEEKE---KEEEKKKKE 32
+E + E E +EEE+ + EKKK +
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 26.8 bits (60), Expect = 5.0
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 11 SEEEEEK--KEEEKEKEEEKKKKE 32
+E+E +K ++ E E ++K E
Sbjct: 508 NEDEIQKMVRDAEANAEADRKFDE 531
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 26.4 bits (59), Expect = 5.0
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 9 KISEEEEEK--KEEEKEKEEEKKKKE 32
++++EE ++ +E EK E+ K
Sbjct: 118 RLTQEEIDRMVEEAEKFASEDASIKA 143
Score = 26.0 bits (58), Expect = 6.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 6 IERKISEEEEEKKEEEKEKEE 26
I+R + E E+ E+ K +
Sbjct: 124 IDRMVEEAEKFASEDASIKAK 144
>2g3b_A Putative TETR-family transcriptional regulator; transcription
regulator, structural genomics, P protein structure
initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP:
a.4.1.9 a.121.1.1
Length = 208
Score = 26.6 bits (59), Expect = 5.7
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 89 EQAKRLIRGNYTRELSIYERFV-AGSLAGGVSLNVPDDFTAKE---MLTGMWWRHLVAGG 144
E + + +S + G +S ++ TA ++ G+ R L
Sbjct: 112 EALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVEGLSGRWLCKEI 171
Query: 145 VAGAVSRTCTAPLDRL 160
+D +
Sbjct: 172 STEDARSHLLGAIDVV 187
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 26.0 bits (58), Expect = 5.7
Identities = 3/26 (11%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 9 KISEEEEEK--KEEEKEKEEEKKKKE 32
++++ + ++ E ++ ++E+ +++E
Sbjct: 118 RLTQSDIDRMVHEAKQFEKEDGEQRE 143
Score = 26.0 bits (58), Expect = 6.0
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 6 IERKISEEEEEKKEEEKEKEE 26
I+R + E ++ +KE+ +++E
Sbjct: 124 IDRMVHEAKQFEKEDGEQRER 144
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 26.8 bits (59), Expect = 6.4
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 9 KISEEEEEKKEEEKEKEEEKKKKE 32
+++E E ++KE+EE + + E
Sbjct: 389 SEAKQENENMRKKKEEEERRARME 412
Score = 26.4 bits (58), Expect = 8.3
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 6 IERKISEEEEEKKEEEKEKEEEKKKKE-----GGREGEELGV 42
+ +EEEE++ + + +E++++E EE G
Sbjct: 396 ENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGE 437
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 6.7
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 5 AIERKISEEEEEKKEEEKEKEEEKKKKEGGREGEELGVHGNKTTGIKK 52
+ + + E++KK + E K++K + G + +K+
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKR 421
>3nxh_A Transcriptional regulator YVHJ; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics consortium; 2.58A {Bacillus subtilis subsp}
Length = 269
Score = 26.1 bits (58), Expect = 7.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 116 GGVSLNVPDDFTAKEMLTGMWWRHLVAG 143
GG+ ++VP DF K + + G
Sbjct: 107 GGIDVDVPFDFDEKSDVDESKRIYFKKG 134
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 26.4 bits (59), Expect = 7.2
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 10 ISEEEEEK--KEEEKEKEEEKKKKE 32
+SEEE ++ KE E+ E ++K+KE
Sbjct: 476 LSEEEIQRMIKEAEENAEADRKRKE 500
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 26.1 bits (58), Expect = 7.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 9 KISEEEEEKKEEEKEKEEEKKKKEG 33
K+ E E +KK EK+ E+ K G
Sbjct: 294 KLYEVEMQKKNAEKQAMEDNKSDIG 318
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor,
virulence factor; 2.40A {Yersinia pseudotuberculosis}
Length = 238
Score = 26.1 bits (58), Expect = 7.8
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 90 QAKRLIRGNYTRELSIYERFVAGSLAGGVSLNVPDDF 126
+ ++ L + ++ G + + DD
Sbjct: 3 SSHHHHH--HSSGLVPRGSHMYSNMEGSLIIGASDDT 37
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 26.4 bits (58), Expect = 8.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 AIERKISEEEEEKKEEEKEKEEEKKKKE 32
A++ E E+K + +EK +KE
Sbjct: 379 AVKENQKRRETEEKMRRAKLAKEKAEKE 406
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.5 bits (57), Expect = 8.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKEGGRE 36
+R +E+E+ K +E+E+ KEG ++
Sbjct: 538 DRVQLLKEQERTLALKLQEQEQLLKEGFQK 567
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.21A {Bacillus halodurans c-125}
SCOP: d.104.1.3
Length = 288
Score = 26.1 bits (57), Expect = 9.3
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKEGGREGEELGVH 43
+S +E E+ + E+ +K EG H
Sbjct: 252 TESLSADEWLLYEQHFARISERNEKLLAEEGHHHHHH 288
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 26.4 bits (58), Expect = 9.4
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKEGGREGEELGVHGNKTTGIKKCLLHLLHE 60
E ++ + K +E+ + + + K + L L +
Sbjct: 656 EDNEADVRKSIDNFHVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDK 709
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.399
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,138,434
Number of extensions: 189323
Number of successful extensions: 1206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 171
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.7 bits)