RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6875
(201 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 62.4 bits (150), Expect = 2e-12
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 136 WWRHLVAGGVAGAVSRTCTAPLDRLKVYLQVHG--------NKTTGIKKCLLHLLHEGGF 187
+ + +AGGVA A+S+T AP++R+K+ LQV + GI C++ + E GF
Sbjct: 6 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 65
Query: 188 LSLWRGNGSKI 198
LS WRGN + +
Sbjct: 66 LSFWRGNLANV 76
Score = 47.8 bits (112), Expect = 2e-07
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 43 HGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQ 90
TG C + + G + ++G NVL+ A + Y++
Sbjct: 245 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE 291
Score = 35.1 bits (79), Expect = 0.003
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 7/124 (5%)
Query: 81 SALKFMAYEQAKRLIRGNYTRELSIYERFVAGSLAGGVSLNVPDDFTAKEMLTGMWWRHL 140
+ +RG Y + + A +
Sbjct: 154 GLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNV-HIIVSW 212
Query: 141 VAGGVAGAVSRTCTAPLDRLKVYLQV------HGNKTTGIKKCLLHLLHEGGFLSLWRGN 194
+ AV+ + P D ++ + + TG C + + G + ++G
Sbjct: 213 MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGA 272
Query: 195 GSKI 198
S +
Sbjct: 273 WSNV 276
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 29.9 bits (67), Expect = 0.16
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 41 GVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYT 100
G HGN+ TG+ L+ + G G + P A E+ R I +
Sbjct: 15 GTHGNELTGV--FLVTHWLKNGAEVHRAGLEVKPFITNPR------AVEKCTRYIDCDLN 66
Query: 101 R 101
R
Sbjct: 67 R 67
Score = 24.5 bits (53), Expect = 9.5
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 156 PLDRLKVYLQVHGNKTTGIKKCLLHLLHEG 185
P+ ++ ++ HGN+ TG+ + H L G
Sbjct: 6 PIKKIAIFGGTHGNELTGV-FLVTHWLKNG 34
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.2 bits (62), Expect = 0.69
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKEGGREGEE 39
+R +E+E+ K +E+E+ KEG ++
Sbjct: 255 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 27.2 bits (60), Expect = 1.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 AIERKISEEEEEKKEEEKEKEEEKKKKE 32
A++ E E+K + +EK +KE
Sbjct: 303 AVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 25.7 bits (56), Expect = 4.6
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKK 31
+K E EE+ + + KE+ +K++
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.9 bits (54), Expect = 8.7
Identities = 4/25 (16%), Positives = 16/25 (64%)
Query: 6 IERKISEEEEEKKEEEKEKEEEKKK 30
+++ EE+ ++ + +++ EK++
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKER 331
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.9 bits (59), Expect = 1.7
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 8 RKISEEEEEK--KEEEKEKEEEKKKKE 32
+ ++ EE EK E EKEKEE +KKK+
Sbjct: 217 KILNPEEIEKYVAEIEKEKEENEKKKQ 243
Score = 25.4 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 1 MTPIAIERKISEEEEEKKEEEKEKE 25
+ P IE+ ++E E+EK+E EK+K+
Sbjct: 219 LNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 26.9 bits (59), Expect = 1.8
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 41 GVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYT 100
G+HGN+T ++ LL ++ + A +Q KR +
Sbjct: 51 GIHGNETAPVEML-DALLGA-ISHGEIPLRWRLLVILG-----NPPALKQGKRYCHSDMN 103
Query: 101 R 101
R
Sbjct: 104 R 104
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.2 bits (58), Expect = 2.5
Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 8 RKISEEEEEKKEEEKE--KEEEKKKKEGGREGEE 39
K+ + + +KE++K+ +E+K+ + + EE
Sbjct: 95 TKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 26.2 bits (57), Expect = 2.8
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 41 GVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYT 100
GVHGN+T I+ +L + + G ++ A A Q R +
Sbjct: 53 GVHGNETAPIEVV-DGMLTD-----IAAGQLALNCRLLVMFA-NLDAIRQGVRYGNYDMN 105
Query: 101 R 101
R
Sbjct: 106 R 106
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 25.2 bits (55), Expect = 3.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKKKE 32
E ++ E +E++K EE +K KE
Sbjct: 110 EAHLAAMLERLQEKDKHAEEVRKNKE 135
>d2fhfa2 b.1.18.2 (A:163-287) Pullulanase PulA {Klebsiella
pneumoniae [TaxId: 573]}
Length = 125
Score = 25.1 bits (55), Expect = 3.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 93 RLIRGNYTRELSIYERFVAGSLAGGVSLNVPDDFTAKEMLTG 134
+L +++S RF LA + +PDD E+L G
Sbjct: 60 KLTPTTVNQQVS--MRF--PHLASYPAFKLPDDVNVDELLQG 97
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 227
Score = 25.6 bits (55), Expect = 4.6
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 10 ISEEEEEKKEEEKEKEEEKKKKEGGR 35
+ E E E+++ E + K+ GG+
Sbjct: 201 LDEFINFDPEVERQQTELRHKRTGGK 226
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.4 bits (55), Expect = 4.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 1 MTPIAIERKISEEEEEKKEEEKEK 24
+ +E+ I + EEE+ + E+EK
Sbjct: 227 LKQKEVEQLIKKHEEEEAKAEREK 250
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 25.4 bits (55), Expect = 4.8
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 6 IERKISEEEEEKKEEEKEKEEEK 28
+ EE K+ ++ KE +K
Sbjct: 302 LWESRDRYEELKRIDDAMKELQK 324
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 25.4 bits (55), Expect = 4.8
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 119 SLNVPDDFTAKEMLT--GMWWRHLVAGGVAGAVSRTCTAPLDRLKVYLQVHGNKTTGIKK 176
SL++ A+ + T G+ + GV + A + + +HG++T ++
Sbjct: 12 SLDLDHPMVAQTVRTEQGVTLKLH-QRGVLEVIPAQTDAATKNMVISCGIHGDETAPMEL 70
Query: 177 C--LLHLLHEG 185
+ + G
Sbjct: 71 LDKWIDDIVSG 81
Score = 25.0 bits (54), Expect = 6.6
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 41 GVHGNKTTGIKKCLLHLLHEGGFLSLWRGNGINVLKIAPESALKFMAYEQAKRLIRGNYT 100
G+HG++T ++ LL + + +A A + R I N
Sbjct: 59 GIHGDETAPME--LLDKWIDDIVSGFQPVAERCLFIMA-----HPQATVRHVRFIEQNLN 111
Query: 101 R 101
R
Sbjct: 112 R 112
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.4 bits (55), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 12 EEEEEKKEEEKEKEEEKKKKEGGREGEELGV 42
E E E E +EE+K + E + G+
Sbjct: 86 EIVESLNETELLVDEEEKAQNDSEEEQVKGI 116
>d2iqha1 e.75.1.1 (A:21-489) Nucleocapsid protein {Influenza A
virus [TaxId: 11320]}
Length = 469
Score = 25.7 bits (56), Expect = 5.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 4 IAIERKI---SEEEEEKKEEEKEKEEEKKKKEGGR 35
+ IER + +E K EE + KK GG
Sbjct: 41 LTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGP 75
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 25.4 bits (55), Expect = 5.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 12 EEEEEKKEEEKEKEEEKKKKEGGREGEEL 40
E+ +++ EEK E+ K + EL
Sbjct: 215 EKATQEEVEEKNILEKVKAAMTEEDLAEL 243
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 24.7 bits (54), Expect = 7.6
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 9 KISEEEEEKKEEEKEKEEEKKKKE 32
+E ++ +EEK K +E+ +K
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKL 134
Score = 24.7 bits (54), Expect = 7.6
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 7 ERKISEEEEEKKEEEKEKEEEKKK 30
E + +EEK + ++E E+ K+
Sbjct: 114 EARKQMSKEEKLKIKEENEKLLKE 137
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 24.5 bits (53), Expect = 7.7
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 10 ISEEEEEKKEEEKEKEEEKKKKEG-GREGEEL 40
+ E +E K ++ + + E G EEL
Sbjct: 79 VKEVLQECKTVALKRRKASSRLENLGIPEEEL 110
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase
(LeuRS) {Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 24.9 bits (53), Expect = 8.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 3 PIAIERKISEEEEEKKEEEKEKEEEKKKK 31
P AIE K EEK + + + K
Sbjct: 6 PHAIEAKWQRFWEEKGFMKAKDLPGGRGK 34
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 23.5 bits (51), Expect = 9.5
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 11 SEEEEEK--KEEEKEKEEEKKKKE 32
+E+E +K ++ E E ++K +E
Sbjct: 2 NEDEIQKMVRDAEANAEADRKFEE 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.399
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,584
Number of extensions: 36042
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 69
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)