Query psy6877
Match_columns 171
No_of_seqs 152 out of 1891
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 20:41:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.6E-28 3.5E-33 163.1 17.3 143 8-151 8-158 (160)
2 KOG0027|consensus 99.9 8E-26 1.7E-30 152.3 16.9 136 14-149 2-149 (151)
3 PTZ00183 centrin; Provisional 99.9 9.3E-23 2E-27 138.3 18.1 141 11-151 8-156 (158)
4 PTZ00184 calmodulin; Provision 99.9 7.6E-23 1.6E-27 137.3 16.8 139 10-148 1-147 (149)
5 KOG0028|consensus 99.9 1.7E-22 3.8E-27 131.8 15.8 140 11-150 24-171 (172)
6 KOG0031|consensus 99.9 8.2E-22 1.8E-26 127.8 15.8 138 9-150 21-166 (171)
7 KOG0030|consensus 99.9 2E-22 4.4E-27 128.5 12.2 135 13-148 4-150 (152)
8 KOG0034|consensus 99.9 3.7E-20 7.9E-25 127.2 15.5 140 13-154 26-180 (187)
9 KOG0037|consensus 99.8 1.9E-19 4.1E-24 123.6 15.3 132 18-150 55-189 (221)
10 KOG0036|consensus 99.8 1E-18 2.2E-23 129.8 16.6 147 14-160 8-157 (463)
11 KOG0044|consensus 99.8 6E-18 1.3E-22 116.4 14.1 140 9-150 18-176 (193)
12 PLN02964 phosphatidylserine de 99.5 5.2E-13 1.1E-17 106.9 12.7 113 12-128 135-272 (644)
13 KOG4223|consensus 99.5 2E-13 4.4E-18 99.1 9.2 129 19-147 162-303 (325)
14 cd05022 S-100A13 S-100A13: S-1 99.5 2.5E-13 5.3E-18 82.8 7.9 67 84-150 7-76 (89)
15 PF13499 EF-hand_7: EF-hand do 99.4 5.6E-13 1.2E-17 77.2 7.0 62 86-147 1-66 (66)
16 KOG0038|consensus 99.4 2.6E-11 5.6E-16 78.6 13.3 137 13-151 21-179 (189)
17 cd05027 S-100B S-100B: S-100B 99.4 4.5E-12 9.7E-17 77.3 8.8 66 84-149 7-79 (88)
18 smart00027 EH Eps15 homology d 99.3 1.6E-11 3.5E-16 76.4 9.3 70 13-82 3-72 (96)
19 KOG0377|consensus 99.3 5E-11 1.1E-15 90.1 12.4 129 20-150 464-616 (631)
20 KOG0027|consensus 99.3 7.8E-11 1.7E-15 79.3 12.3 108 54-161 8-125 (151)
21 cd05029 S-100A6 S-100A6: S-100 99.3 2.6E-11 5.5E-16 74.0 8.7 67 84-150 9-80 (88)
22 cd05022 S-100A13 S-100A13: S-1 99.3 2.5E-11 5.4E-16 74.0 8.3 67 16-82 4-75 (89)
23 KOG0037|consensus 99.3 3.2E-11 6.9E-16 83.3 9.8 121 17-147 91-218 (221)
24 PTZ00183 centrin; Provisional 99.3 2.4E-10 5.2E-15 77.2 13.5 95 56-150 19-119 (158)
25 KOG4223|consensus 99.3 4.4E-11 9.4E-16 87.1 10.2 135 18-152 75-231 (325)
26 PF13499 EF-hand_7: EF-hand do 99.3 3.7E-11 8.1E-16 69.5 7.9 60 21-80 1-66 (66)
27 cd05031 S-100A10_like S-100A10 99.3 5E-11 1.1E-15 73.9 8.5 67 83-149 6-79 (94)
28 cd05025 S-100A1 S-100A1: S-100 99.3 7.2E-11 1.6E-15 72.9 8.8 67 83-149 7-80 (92)
29 cd05026 S-100Z S-100Z: S-100Z 99.3 7.8E-11 1.7E-15 72.8 8.7 67 84-150 9-82 (93)
30 COG5126 FRQ1 Ca2+-binding prot 99.2 7.7E-10 1.7E-14 74.1 13.1 97 56-153 22-124 (160)
31 cd05027 S-100B S-100B: S-100B 99.2 2.6E-10 5.7E-15 69.5 9.9 67 16-82 4-79 (88)
32 PF13833 EF-hand_8: EF-hand do 99.2 7.2E-11 1.6E-15 65.5 6.5 52 98-149 1-53 (54)
33 cd00052 EH Eps15 homology doma 99.2 9.4E-11 2E-15 67.9 6.9 60 88-149 2-61 (67)
34 PTZ00184 calmodulin; Provision 99.2 1.5E-09 3.3E-14 72.4 12.9 95 56-150 13-113 (149)
35 KOG0044|consensus 99.2 1.6E-09 3.4E-14 74.9 12.6 116 35-150 7-129 (193)
36 cd00052 EH Eps15 homology doma 99.2 2.4E-10 5.1E-15 66.2 7.3 60 23-82 2-61 (67)
37 smart00027 EH Eps15 homology d 99.1 3.9E-10 8.4E-15 70.1 8.2 65 84-150 9-73 (96)
38 KOG0040|consensus 99.1 1.3E-09 2.9E-14 92.3 13.6 130 11-148 2244-2397(2399)
39 cd00213 S-100 S-100: S-100 dom 99.1 3.5E-10 7.6E-15 69.2 7.6 67 83-149 6-79 (88)
40 cd05026 S-100Z S-100Z: S-100Z 99.1 1.7E-09 3.7E-14 66.8 10.2 68 16-83 6-82 (93)
41 cd00051 EFh EF-hand, calcium b 99.1 4.9E-10 1.1E-14 63.3 7.4 61 87-147 2-62 (63)
42 cd05023 S-100A11 S-100A11: S-1 99.1 8.9E-10 1.9E-14 67.3 8.6 68 83-150 7-81 (89)
43 cd05025 S-100A1 S-100A1: S-100 99.1 1.8E-09 3.9E-14 66.6 9.3 68 16-83 5-81 (92)
44 cd00213 S-100 S-100: S-100 dom 99.1 2.9E-09 6.3E-14 65.1 9.9 68 16-83 4-80 (88)
45 KOG0028|consensus 99.1 6.9E-09 1.5E-13 68.5 11.8 98 55-152 34-137 (172)
46 PLN02964 phosphatidylserine de 99.1 3.5E-09 7.7E-14 85.2 12.5 114 36-150 120-244 (644)
47 cd05029 S-100A6 S-100A6: S-100 99.1 2.3E-09 5E-14 65.4 8.8 67 16-82 6-79 (88)
48 KOG0041|consensus 99.1 1E-09 2.2E-14 74.9 7.8 86 72-157 86-171 (244)
49 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.1E-09 4.6E-14 68.7 7.7 63 82-148 45-107 (116)
50 KOG2643|consensus 99.0 5.5E-09 1.2E-13 79.1 10.8 139 21-160 234-395 (489)
51 cd05031 S-100A10_like S-100A10 99.0 4.2E-09 9.2E-14 65.2 8.5 66 17-82 5-79 (94)
52 PF14658 EF-hand_9: EF-hand do 99.0 2.4E-09 5.2E-14 60.7 6.6 60 89-148 2-63 (66)
53 KOG0031|consensus 99.0 8.4E-09 1.8E-13 67.6 10.0 88 74-165 21-109 (171)
54 KOG2643|consensus 99.0 3.8E-09 8.3E-14 79.9 9.5 129 20-150 318-454 (489)
55 KOG4251|consensus 99.0 9E-09 2E-13 72.6 10.3 130 18-147 99-307 (362)
56 cd05023 S-100A11 S-100A11: S-1 99.0 1.5E-08 3.2E-13 61.9 9.8 67 16-82 5-80 (89)
57 cd05030 calgranulins Calgranul 99.0 5.6E-09 1.2E-13 63.8 7.6 66 84-149 7-79 (88)
58 KOG0034|consensus 98.9 3.9E-08 8.4E-13 68.0 10.6 92 23-114 69-176 (187)
59 cd00252 SPARC_EC SPARC_EC; ext 98.9 2E-08 4.3E-13 64.2 8.2 64 15-80 43-106 (116)
60 cd00051 EFh EF-hand, calcium b 98.8 2.5E-08 5.3E-13 56.1 7.1 59 22-80 2-62 (63)
61 PF12763 EF-hand_4: Cytoskelet 98.8 2.8E-08 6.2E-13 62.3 6.8 69 13-82 3-71 (104)
62 KOG2562|consensus 98.8 9.6E-08 2.1E-12 73.0 10.8 125 21-146 279-421 (493)
63 PF13833 EF-hand_8: EF-hand do 98.8 4.2E-08 9.1E-13 54.2 6.5 50 33-82 1-53 (54)
64 KOG0041|consensus 98.7 2E-07 4.4E-12 63.9 9.2 97 13-109 92-199 (244)
65 cd05030 calgranulins Calgranul 98.7 2.2E-07 4.8E-12 56.7 8.3 67 16-82 4-79 (88)
66 PF14658 EF-hand_9: EF-hand do 98.6 2.5E-07 5.4E-12 52.5 6.4 59 24-82 2-64 (66)
67 cd05024 S-100A10 S-100A10: A s 98.6 7.6E-07 1.6E-11 54.1 8.7 66 84-150 7-77 (91)
68 PF00036 EF-hand_1: EF hand; 98.6 9.3E-08 2E-12 45.7 3.3 27 87-113 2-28 (29)
69 KOG1029|consensus 98.6 1.7E-06 3.7E-11 70.0 12.0 132 14-148 10-256 (1118)
70 KOG0036|consensus 98.6 2.3E-06 5.1E-11 64.8 11.9 121 19-147 50-181 (463)
71 cd05024 S-100A10 S-100A10: A s 98.5 3.4E-06 7.4E-11 51.3 10.1 67 16-83 4-77 (91)
72 KOG0751|consensus 98.5 1.1E-06 2.4E-11 67.9 9.7 135 13-150 26-176 (694)
73 PF00036 EF-hand_1: EF hand; 98.5 3.2E-07 7E-12 43.8 3.7 29 21-49 1-29 (29)
74 PF13405 EF-hand_6: EF-hand do 98.5 2.8E-07 6.1E-12 44.8 3.3 30 86-115 1-31 (31)
75 KOG0030|consensus 98.5 5.9E-07 1.3E-11 58.1 5.7 67 84-150 10-78 (152)
76 KOG0751|consensus 98.4 2.5E-06 5.5E-11 66.0 9.6 132 23-154 111-249 (694)
77 PF14788 EF-hand_10: EF hand; 98.4 2.8E-06 6E-11 45.6 5.9 49 101-149 1-49 (51)
78 PF13405 EF-hand_6: EF-hand do 98.3 1E-06 2.2E-11 42.8 3.7 30 21-50 1-31 (31)
79 KOG1707|consensus 98.3 1.4E-05 2.9E-10 63.4 11.3 145 10-157 185-385 (625)
80 PF12763 EF-hand_4: Cytoskelet 98.2 1E-05 2.3E-10 50.7 7.8 63 84-149 9-71 (104)
81 KOG0169|consensus 98.2 7.9E-05 1.7E-09 60.7 12.8 138 12-150 128-275 (746)
82 PRK12309 transaldolase/EF-hand 98.1 8.7E-06 1.9E-10 62.7 6.6 52 84-148 333-384 (391)
83 PF13202 EF-hand_5: EF hand; P 98.1 4E-06 8.8E-11 38.5 2.7 23 88-110 2-24 (25)
84 KOG0040|consensus 98.1 1.6E-05 3.6E-10 68.6 8.1 83 84-166 2252-2343(2399)
85 KOG4666|consensus 98.0 1.3E-05 2.9E-10 59.0 5.6 99 55-154 260-364 (412)
86 KOG2562|consensus 98.0 7.6E-05 1.7E-09 57.6 9.5 95 57-154 228-348 (493)
87 KOG0046|consensus 98.0 4.1E-05 8.9E-10 59.9 7.6 73 9-82 8-85 (627)
88 PF13202 EF-hand_5: EF hand; P 97.9 1.7E-05 3.7E-10 36.4 3.1 24 22-45 1-24 (25)
89 KOG0377|consensus 97.9 5.2E-05 1.1E-09 58.2 6.8 97 15-114 511-616 (631)
90 PRK12309 transaldolase/EF-hand 97.9 5.9E-05 1.3E-09 58.2 6.9 54 53-114 333-386 (391)
91 KOG0038|consensus 97.9 0.00018 4E-09 47.2 8.1 91 24-114 75-178 (189)
92 PF10591 SPARC_Ca_bdg: Secrete 97.8 8.1E-06 1.8E-10 52.1 1.2 61 83-145 52-112 (113)
93 PF14788 EF-hand_10: EF hand; 97.8 0.00015 3.3E-09 38.9 5.7 45 37-81 2-48 (51)
94 PF09279 EF-hand_like: Phospho 97.7 0.00019 4.2E-09 43.1 6.3 65 86-151 1-71 (83)
95 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.9E-05 4E-10 50.4 1.9 65 14-78 48-112 (113)
96 KOG0046|consensus 97.6 0.00027 5.8E-09 55.5 6.8 70 84-154 18-90 (627)
97 KOG4251|consensus 97.3 0.0004 8.7E-09 49.6 4.1 72 83-154 99-173 (362)
98 KOG0998|consensus 97.1 0.00067 1.5E-08 57.4 4.7 134 14-150 123-346 (847)
99 PF05042 Caleosin: Caleosin re 97.1 0.0062 1.3E-07 41.4 8.0 127 20-147 7-164 (174)
100 smart00054 EFh EF-hand, calciu 97.0 0.0011 2.4E-08 30.4 3.2 27 22-48 2-28 (29)
101 smart00054 EFh EF-hand, calciu 97.0 0.00094 2E-08 30.6 2.8 23 89-111 4-26 (29)
102 KOG4065|consensus 97.0 0.0047 1E-07 39.0 6.2 59 88-146 70-142 (144)
103 PF05042 Caleosin: Caleosin re 96.9 0.0088 1.9E-07 40.7 7.4 37 118-154 93-129 (174)
104 KOG1955|consensus 96.9 0.0043 9.3E-08 48.7 6.6 71 11-81 222-292 (737)
105 PF09279 EF-hand_like: Phospho 96.8 0.0047 1E-07 37.0 5.3 61 21-82 1-69 (83)
106 KOG4666|consensus 96.6 0.0071 1.5E-07 45.1 5.8 96 19-114 258-360 (412)
107 PF05517 p25-alpha: p25-alpha 96.5 0.017 3.7E-07 39.0 6.9 60 23-82 2-69 (154)
108 KOG1955|consensus 96.3 0.012 2.7E-07 46.3 5.9 67 82-150 228-294 (737)
109 PLN02952 phosphoinositide phos 96.3 0.058 1.3E-06 44.1 9.6 82 67-149 13-110 (599)
110 KOG3555|consensus 96.2 0.015 3.2E-07 43.8 5.6 63 84-150 249-311 (434)
111 KOG1029|consensus 96.1 0.012 2.5E-07 48.8 5.0 65 16-80 191-255 (1118)
112 KOG0998|consensus 96.0 0.0086 1.9E-07 50.9 4.1 133 14-149 5-190 (847)
113 KOG4065|consensus 96.0 0.032 6.9E-07 35.3 5.5 65 12-78 61-141 (144)
114 KOG0042|consensus 95.7 0.033 7.2E-07 44.7 5.8 74 9-82 582-657 (680)
115 PF09069 EF-hand_3: EF-hand; 95.5 0.19 4.1E-06 30.6 7.3 67 84-153 2-79 (90)
116 KOG0035|consensus 95.4 0.1 2.3E-06 44.2 8.1 98 11-109 738-848 (890)
117 KOG3555|consensus 95.2 0.042 9.1E-07 41.4 4.8 106 20-126 211-322 (434)
118 PF05517 p25-alpha: p25-alpha 95.1 0.17 3.7E-06 34.1 7.1 61 90-150 7-70 (154)
119 KOG0169|consensus 94.5 0.73 1.6E-05 38.5 10.3 93 54-150 136-233 (746)
120 KOG3866|consensus 94.4 0.35 7.7E-06 36.1 7.6 62 20-81 205-271 (442)
121 KOG2243|consensus 94.2 0.11 2.4E-06 46.2 5.3 64 89-154 4061-4124(5019)
122 KOG0042|consensus 93.6 0.19 4E-06 40.7 5.3 65 86-150 594-658 (680)
123 KOG4578|consensus 93.2 0.096 2.1E-06 39.3 3.0 66 86-151 334-400 (421)
124 KOG4578|consensus 93.1 0.05 1.1E-06 40.8 1.4 29 84-112 369-397 (421)
125 KOG3866|consensus 93.1 0.42 9.1E-06 35.8 6.2 72 88-159 247-334 (442)
126 KOG0035|consensus 93.1 0.54 1.2E-05 40.1 7.5 68 83-150 745-817 (890)
127 PF08726 EFhand_Ca_insen: Ca2+ 92.9 0.07 1.5E-06 30.8 1.5 54 85-146 6-66 (69)
128 KOG1265|consensus 92.6 6.4 0.00014 34.1 14.3 121 29-150 157-300 (1189)
129 KOG2243|consensus 92.3 0.33 7.3E-06 43.4 5.3 57 24-80 4061-4118(5019)
130 KOG4347|consensus 91.8 0.47 1E-05 38.9 5.4 96 11-107 495-612 (671)
131 KOG1707|consensus 91.7 0.24 5.2E-06 40.2 3.7 69 12-81 307-376 (625)
132 PF00046 Homeobox: Homeobox do 91.3 1.4 3.1E-05 23.9 5.9 45 12-61 5-49 (57)
133 cd00086 homeodomain Homeodomai 89.7 2.1 4.5E-05 23.2 6.2 46 12-62 5-50 (59)
134 PF08976 DUF1880: Domain of un 89.0 0.33 7.2E-06 30.8 2.0 33 118-150 4-36 (118)
135 PLN02222 phosphoinositide phos 88.1 2.5 5.4E-05 34.8 6.9 64 85-150 25-91 (581)
136 PF14513 DAG_kinase_N: Diacylg 88.0 1.1 2.3E-05 29.7 4.0 64 35-98 6-82 (138)
137 KOG4347|consensus 87.6 1.3 2.8E-05 36.5 4.9 59 84-143 554-612 (671)
138 PF08726 EFhand_Ca_insen: Ca2+ 87.5 0.63 1.4E-05 26.9 2.3 53 20-78 6-65 (69)
139 PF08414 NADPH_Ox: Respiratory 87.3 3.2 7E-05 25.7 5.4 61 18-81 28-91 (100)
140 PLN02228 Phosphoinositide phos 86.4 4.3 9.2E-05 33.4 7.3 65 84-150 23-93 (567)
141 PF14513 DAG_kinase_N: Diacylg 86.3 1.5 3.2E-05 29.1 3.9 61 98-160 4-71 (138)
142 cd07313 terB_like_2 tellurium 85.4 3.8 8.2E-05 25.3 5.4 53 98-150 12-66 (104)
143 KOG3449|consensus 84.3 8.1 0.00018 24.4 6.3 44 88-131 4-47 (112)
144 KOG0039|consensus 84.2 1.4 3.1E-05 36.8 3.8 82 68-151 2-91 (646)
145 PLN02230 phosphoinositide phos 84.1 6.7 0.00015 32.6 7.4 66 84-150 28-103 (598)
146 PF09069 EF-hand_3: EF-hand; 83.7 7.7 0.00017 23.7 7.9 60 19-81 2-74 (90)
147 KOG1264|consensus 82.4 9.9 0.00021 32.8 7.7 138 14-151 137-295 (1267)
148 PF07308 DUF1456: Protein of u 82.0 6.6 0.00014 22.5 4.9 45 103-147 15-59 (68)
149 TIGR01565 homeo_ZF_HD homeobox 81.7 3.7 8.1E-05 22.8 3.7 43 12-59 6-52 (58)
150 PRK09430 djlA Dna-J like membr 81.5 19 0.00042 26.7 13.3 130 33-166 68-224 (267)
151 TIGR01848 PHA_reg_PhaR polyhyd 81.0 7.6 0.00017 24.4 5.2 49 93-141 11-69 (107)
152 PLN02952 phosphoinositide phos 80.5 7.6 0.00017 32.3 6.5 54 98-152 13-68 (599)
153 smart00389 HOX Homeodomain. DN 78.4 8.2 0.00018 20.5 5.8 45 13-62 6-50 (56)
154 PF08976 DUF1880: Domain of un 77.9 2.2 4.7E-05 27.2 2.2 32 51-82 4-35 (118)
155 PF07879 PHB_acc_N: PHB/PHA ac 77.2 6.1 0.00013 22.3 3.6 39 92-130 10-58 (64)
156 PF00404 Dockerin_1: Dockerin 77.1 4.6 9.9E-05 17.4 2.5 15 95-109 1-15 (21)
157 PTZ00373 60S Acidic ribosomal 76.9 14 0.00031 23.5 5.6 53 88-145 6-58 (112)
158 PLN02223 phosphoinositide phos 76.5 15 0.00031 30.2 6.9 66 84-150 15-93 (537)
159 KOG2871|consensus 75.2 2.5 5.5E-05 32.6 2.3 63 83-145 307-370 (449)
160 COG4103 Uncharacterized protei 73.8 19 0.00042 23.9 5.8 64 89-154 34-99 (148)
161 cd05833 Ribosomal_P2 Ribosomal 72.6 21 0.00045 22.6 5.6 55 88-147 4-58 (109)
162 PLN02222 phosphoinositide phos 71.8 22 0.00047 29.6 6.9 59 21-81 26-89 (581)
163 cd07313 terB_like_2 tellurium 71.6 21 0.00045 21.9 7.8 73 34-108 13-95 (104)
164 PF09068 EF-hand_2: EF hand; 71.4 25 0.00055 22.9 7.5 27 87-113 99-125 (127)
165 PF12631 GTPase_Cys_C: Catalyt 70.7 18 0.00039 20.9 4.8 54 77-130 15-72 (73)
166 PF01325 Fe_dep_repress: Iron 69.0 18 0.00038 20.1 4.8 48 13-65 1-48 (60)
167 PF01023 S_100: S-100/ICaBP ty 68.8 15 0.00032 19.0 4.2 32 17-48 3-36 (44)
168 TIGR01639 P_fal_TIGR01639 Plas 68.8 16 0.00034 20.4 4.0 32 100-131 8-39 (61)
169 KOG1954|consensus 66.8 11 0.00023 29.6 4.0 54 23-77 447-500 (532)
170 PLN02228 Phosphoinositide phos 66.6 39 0.00085 28.1 7.4 63 14-81 21-91 (567)
171 KOG0843|consensus 66.6 19 0.00041 25.0 4.7 46 11-61 106-151 (197)
172 PRK09430 djlA Dna-J like membr 65.6 42 0.00091 24.9 6.9 53 97-150 67-121 (267)
173 PF05099 TerB: Tellurite resis 65.2 5.9 0.00013 25.8 2.2 52 98-149 36-89 (140)
174 PF05099 TerB: Tellurite resis 64.4 10 0.00022 24.6 3.2 72 33-106 36-117 (140)
175 COG2058 RPP1A Ribosomal protei 63.9 34 0.00074 21.6 6.1 54 90-149 6-59 (109)
176 KOG4070|consensus 63.6 18 0.00038 24.4 4.0 63 20-82 12-85 (180)
177 KOG2871|consensus 61.5 7.4 0.00016 30.2 2.3 61 19-79 308-371 (449)
178 PF12174 RST: RCD1-SRO-TAF4 (R 61.4 30 0.00064 20.0 4.7 17 98-114 38-54 (70)
179 PF11300 DUF3102: Protein of u 61.0 44 0.00096 21.9 6.2 28 36-63 38-66 (130)
180 PLN00138 large subunit ribosom 60.7 41 0.0009 21.5 5.6 51 90-145 6-56 (113)
181 KOG2301|consensus 60.4 20 0.00044 33.5 5.1 70 13-82 1410-1484(1592)
182 PF03979 Sigma70_r1_1: Sigma-7 58.3 14 0.00031 21.9 2.8 46 20-67 7-52 (82)
183 cd07316 terB_like_DjlA N-termi 57.7 41 0.0009 20.5 7.0 52 98-149 12-64 (106)
184 PF07499 RuvA_C: RuvA, C-termi 56.9 27 0.00059 18.2 4.2 36 40-77 4-39 (47)
185 PF08414 NADPH_Ox: Respiratory 56.8 46 0.00099 20.7 5.5 47 99-148 42-91 (100)
186 KOG1265|consensus 55.2 64 0.0014 28.5 6.8 62 20-81 221-298 (1189)
187 KOG0488|consensus 53.2 42 0.00092 25.5 5.2 47 11-62 176-222 (309)
188 PLN02230 phosphoinositide phos 52.5 99 0.0021 26.0 7.4 61 20-81 29-101 (598)
189 PF11116 DUF2624: Protein of u 51.9 52 0.0011 19.9 6.4 48 100-147 13-60 (85)
190 KOG4004|consensus 51.6 6.6 0.00014 27.7 0.6 44 68-111 202-248 (259)
191 COG4359 Uncharacterized conser 50.9 66 0.0014 22.7 5.3 76 67-150 10-88 (220)
192 PF11020 DUF2610: Domain of un 49.6 38 0.00083 20.1 3.5 36 115-150 43-78 (82)
193 PHA02105 hypothetical protein 48.5 46 0.001 18.3 3.5 53 101-153 4-61 (68)
194 PRK07571 bidirectional hydroge 48.3 88 0.0019 21.5 6.2 54 10-63 12-78 (169)
195 cd04411 Ribosomal_P1_P2_L12p R 48.3 67 0.0015 20.2 5.8 42 102-148 17-58 (105)
196 PRK06402 rpl12p 50S ribosomal 48.2 69 0.0015 20.2 5.7 42 101-147 16-57 (106)
197 TIGR03573 WbuX N-acetyl sugar 47.0 58 0.0013 25.1 5.2 32 99-130 300-331 (343)
198 PF09743 DUF2042: Uncharacteri 44.3 88 0.0019 23.4 5.6 71 68-147 68-140 (272)
199 KOG4718|consensus 43.6 1.1E+02 0.0023 22.0 5.5 57 7-63 86-146 (235)
200 PF01885 PTS_2-RNA: RNA 2'-pho 43.5 53 0.0011 22.9 4.1 37 95-131 26-62 (186)
201 KOG1954|consensus 43.2 43 0.00093 26.5 3.8 56 87-145 446-501 (532)
202 PRK00819 RNA 2'-phosphotransfe 42.5 59 0.0013 22.6 4.2 35 96-130 28-62 (179)
203 cd08316 Death_FAS_TNFRSF6 Deat 41.5 85 0.0018 19.4 7.9 77 36-128 17-93 (97)
204 PF03672 UPF0154: Uncharacteri 41.5 68 0.0015 18.2 4.0 33 98-130 28-60 (64)
205 TIGR00135 gatC glutamyl-tRNA(G 41.3 70 0.0015 19.3 4.0 29 102-130 1-29 (93)
206 PRK12461 UDP-N-acetylglucosami 40.9 1.4E+02 0.0031 21.9 6.3 55 9-66 195-249 (255)
207 PRK00034 gatC aspartyl/glutamy 40.5 81 0.0018 19.0 4.2 30 101-130 2-31 (95)
208 PF13720 Acetyltransf_11: Udp 39.4 83 0.0018 18.7 5.4 53 9-64 23-75 (83)
209 KOG0493|consensus 39.0 87 0.0019 23.2 4.7 45 12-61 251-295 (342)
210 PF07128 DUF1380: Protein of u 38.9 63 0.0014 21.5 3.6 31 102-132 27-57 (139)
211 KOG4286|consensus 38.7 2.7E+02 0.0059 24.4 8.5 50 86-135 471-520 (966)
212 PF08355 EF_assoc_1: EF hand a 38.6 34 0.00073 20.1 2.2 28 130-157 11-38 (76)
213 PF13623 SurA_N_2: SurA N-term 37.2 1.3E+02 0.0027 20.1 7.4 36 111-146 99-144 (145)
214 PRK00523 hypothetical protein; 37.1 87 0.0019 18.2 4.0 33 98-130 36-68 (72)
215 PF08461 HTH_12: Ribonuclease 36.7 77 0.0017 17.9 3.4 36 98-133 10-45 (66)
216 PF12419 DUF3670: SNF2 Helicas 36.4 1.3E+02 0.0027 19.9 4.9 46 33-78 80-137 (141)
217 PLN02223 phosphoinositide phos 36.3 2.1E+02 0.0045 23.8 6.9 62 20-82 16-92 (537)
218 PF02885 Glycos_trans_3N: Glyc 35.8 83 0.0018 17.6 4.9 17 115-131 12-28 (66)
219 COG5069 SAC6 Ca2+-binding acti 35.1 84 0.0018 25.7 4.4 81 14-95 479-564 (612)
220 PF02761 Cbl_N2: CBL proto-onc 35.1 1E+02 0.0023 18.6 6.9 51 100-150 21-71 (85)
221 PF09373 PMBR: Pseudomurein-bi 34.7 49 0.0011 15.8 2.1 15 99-113 2-16 (33)
222 PF04157 EAP30: EAP30/Vps36 fa 34.7 1.7E+02 0.0037 20.9 10.5 16 39-54 60-75 (223)
223 PF08730 Rad33: Rad33; InterP 34.5 1.6E+02 0.0034 20.4 5.7 44 13-57 7-50 (170)
224 KOG0850|consensus 34.2 80 0.0017 23.0 3.8 44 13-61 128-171 (245)
225 PRK07539 NADH dehydrogenase su 34.1 1.5E+02 0.0032 19.9 6.2 31 33-63 34-64 (154)
226 TIGR03830 CxxCG_CxxCG_HTH puta 33.5 1.3E+02 0.0027 19.0 5.2 43 14-56 42-84 (127)
227 cd07176 terB tellurite resista 33.5 57 0.0012 19.9 2.8 16 99-114 16-31 (111)
228 PF13373 DUF2407_C: DUF2407 C- 32.6 60 0.0013 21.6 2.9 23 9-31 6-28 (140)
229 TIGR03685 L21P_arch 50S riboso 32.3 1.3E+02 0.0029 18.9 5.7 44 101-149 16-59 (105)
230 PF13331 DUF4093: Domain of un 32.0 90 0.002 18.8 3.3 9 71-79 77-85 (87)
231 TIGR02574 stabl_TIGR02574 puta 31.8 98 0.0021 17.2 4.3 28 16-43 30-57 (63)
232 PF15017 AF1Q: Drug resistance 31.2 29 0.00062 21.0 1.1 16 95-110 69-84 (87)
233 PF06163 DUF977: Bacterial pro 31.1 1.6E+02 0.0034 19.3 4.8 50 10-63 1-50 (127)
234 cd05832 Ribosomal_L12p Ribosom 31.0 1.4E+02 0.0031 18.8 5.7 43 101-148 16-58 (106)
235 KOG4403|consensus 30.9 2.9E+02 0.0063 22.4 7.0 92 32-127 40-144 (575)
236 PF11848 DUF3368: Domain of un 30.9 87 0.0019 16.3 3.4 33 98-130 14-47 (48)
237 PRK14981 DNA-directed RNA poly 30.7 1.2E+02 0.0027 19.1 4.0 26 104-129 81-106 (112)
238 KOG0492|consensus 29.8 81 0.0017 22.6 3.2 45 12-61 149-193 (246)
239 cd00171 Sec7 Sec7 domain; Doma 29.7 1.5E+02 0.0033 20.6 4.6 15 136-150 148-162 (185)
240 PF12486 DUF3702: ImpA domain 29.7 1E+02 0.0023 20.7 3.6 31 18-48 67-97 (148)
241 PF09336 Vps4_C: Vps4 C termin 28.8 1.1E+02 0.0024 17.0 3.4 24 138-161 30-53 (62)
242 PF07261 DnaB_2: Replication i 28.8 93 0.002 17.6 3.0 42 91-132 2-44 (77)
243 KOG0842|consensus 28.7 46 0.001 25.3 2.0 44 13-61 159-202 (307)
244 PF08349 DUF1722: Protein of u 28.6 1E+02 0.0023 19.5 3.4 43 107-149 55-97 (117)
245 TIGR01446 DnaD_dom DnaD and ph 28.5 1.2E+02 0.0026 17.1 3.6 48 91-140 2-50 (73)
246 cd05831 Ribosomal_P1 Ribosomal 28.3 1.6E+02 0.0034 18.5 4.8 45 98-147 14-58 (103)
247 cd06404 PB1_aPKC PB1 domain is 28.1 1.4E+02 0.0031 17.9 3.6 22 119-140 57-78 (83)
248 KOG0483|consensus 28.0 1.8E+02 0.0039 20.6 4.8 46 12-62 55-100 (198)
249 PF09107 SelB-wing_3: Elongati 27.8 72 0.0016 17.0 2.2 10 35-44 9-18 (50)
250 KOG0506|consensus 27.8 2.6E+02 0.0057 23.0 6.0 58 24-81 90-157 (622)
251 COG3763 Uncharacterized protei 27.7 1.3E+02 0.0028 17.4 4.2 33 98-130 35-67 (71)
252 PF02337 Gag_p10: Retroviral G 27.7 1.5E+02 0.0033 18.1 4.5 39 107-145 14-57 (90)
253 PRK05988 formate dehydrogenase 27.6 2E+02 0.0043 19.5 5.9 31 33-63 35-65 (156)
254 PLN03083 E3 UFM1-protein ligas 27.5 2.8E+02 0.0061 24.4 6.5 33 115-147 110-144 (803)
255 PRK01844 hypothetical protein; 27.5 1.3E+02 0.0029 17.5 4.0 33 98-130 35-67 (72)
256 PF06569 DUF1128: Protein of u 27.3 1.3E+02 0.0029 17.4 3.4 40 9-50 28-67 (71)
257 PF04433 SWIRM: SWIRM domain; 27.0 43 0.00094 19.8 1.4 29 66-94 49-78 (86)
258 COG0721 GatC Asp-tRNAAsn/Glu-t 26.7 1.6E+02 0.0035 18.1 4.0 30 101-130 2-31 (96)
259 PF13608 Potyvirid-P3: Protein 26.4 1.9E+02 0.0042 23.3 5.2 34 16-50 285-318 (445)
260 smart00222 Sec7 Sec7 domain. D 25.8 1.9E+02 0.0042 20.0 4.6 15 136-150 150-164 (187)
261 TIGR02787 codY_Gpos GTP-sensin 25.1 2.9E+02 0.0062 20.5 6.4 50 11-64 174-223 (251)
262 PF09312 SurA_N: SurA N-termin 24.9 1.9E+02 0.0041 18.3 4.5 36 112-149 61-96 (118)
263 COG4103 Uncharacterized protei 24.7 2.2E+02 0.0049 19.1 6.9 86 24-113 34-129 (148)
264 PF07862 Nif11: Nitrogen fixat 24.6 1.2E+02 0.0025 15.7 2.8 21 103-123 28-48 (49)
265 COG1460 Uncharacterized protei 24.5 1.9E+02 0.0042 18.5 3.9 28 103-130 81-108 (114)
266 cd07311 terB_like_1 tellurium 23.5 2.4E+02 0.0052 18.9 9.8 92 33-129 36-133 (150)
267 cd08313 Death_TNFR1 Death doma 23.1 1.6E+02 0.0034 17.5 3.2 26 36-61 8-33 (80)
268 COG2818 Tag 3-methyladenine DN 22.6 1.3E+02 0.0027 21.2 3.1 39 82-120 52-90 (188)
269 COG5562 Phage envelope protein 22.5 78 0.0017 20.9 2.0 48 98-149 53-100 (137)
270 cd03035 ArsC_Yffb Arsenate Red 22.5 96 0.0021 19.2 2.4 52 99-153 33-87 (105)
271 PF06648 DUF1160: Protein of u 22.4 2.3E+02 0.005 18.4 4.1 42 86-130 38-80 (122)
272 PF07848 PaaX: PaaX-like prote 22.3 1.7E+02 0.0037 16.8 4.1 42 22-63 6-47 (70)
273 smart00165 UBA Ubiquitin assoc 22.0 1.1E+02 0.0024 14.5 2.3 20 44-63 6-25 (37)
274 PF01988 VIT1: VIT family; In 22.0 2E+02 0.0043 20.4 4.2 33 36-68 79-111 (213)
275 cd08332 CARD_CASP2 Caspase act 21.4 2E+02 0.0044 17.3 5.4 55 98-157 31-85 (90)
276 TIGR01209 RNA ligase, Pab1020 21.1 2.4E+02 0.0053 22.2 4.7 28 25-52 162-189 (374)
277 TIGR03798 ocin_TIGR03798 bacte 20.7 1.7E+02 0.0037 16.2 3.3 25 102-126 25-49 (64)
278 KOG4403|consensus 20.4 2.6E+02 0.0057 22.6 4.7 80 67-150 41-130 (575)
279 PF14490 HHH_4: Helix-hairpin- 20.3 2.1E+02 0.0046 17.2 3.7 27 39-65 8-34 (94)
280 KOG0871|consensus 20.1 2.9E+02 0.0063 18.6 4.3 51 74-130 45-95 (156)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=163.07 Aligned_cols=143 Identities=30% Similarity=0.553 Sum_probs=133.6
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--CHHHHHHHHHhhcCCCCCcccHHHHHHHHHH---
Q psy6877 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGV--HSLYAQKFLERSDSNRSGDISLAEFIHYVKE--- 82 (171)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~--- 82 (171)
+...++|+++++++++++|..+|++++|.|+..+|..+++.+|. +...+..++..++. +++.|+|.+|+.++..
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 56778999999999999999999999999999999999999994 45677999999999 8899999999999975
Q ss_pred ---HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCC
Q psy6877 83 ---HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCP 151 (171)
Q Consensus 83 ---~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 151 (171)
..++++.+|+.||.+++|+|+..+++.+++.+|..+++++++.++..++.+++|.|+|++|...+...|
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 468899999999999999999999999999999999999999999999999999999999999987654
No 2
>KOG0027|consensus
Probab=99.95 E-value=8e-26 Score=152.34 Aligned_cols=136 Identities=27% Similarity=0.535 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC--HHHHHHHHHhhcCCCCCcccHHHHHHHHHHH--------
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH--SLYAQKFLERSDSNRSGDISLAEFIHYVKEH-------- 83 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~-------- 83 (171)
+++.++.+++++|..+|.+++|.|+..++..+++.+|.+ ..++..++..+|.+++|.|++.+|+.++...
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 678899999999999999999999999999999999954 6778999999999999999999999998752
Q ss_pred --HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 84 --EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 84 --~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
...++.+|+.||++++|+||..||++++..+|.+.+.++++.++..+|.|++|.|+|++|+.++..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 238999999999999999999999999999999999999999999999999999999999999864
No 3
>PTZ00183 centrin; Provisional
Probab=99.92 E-value=9.3e-23 Score=138.29 Aligned_cols=141 Identities=26% Similarity=0.491 Sum_probs=129.4
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH------
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE------ 82 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~------ 82 (171)
...+++.++.++..+|..+|++++|.|+..||..+++.+| .+...+..++..+|.+++|.|+|.+|+..+..
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999999888 46667899999999999999999999987754
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCC
Q psy6877 83 HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCP 151 (171)
Q Consensus 83 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 151 (171)
....+..+|+.+|.+++|.|+.+|+..++..+|..++.+++..++..++.+++|.|+|++|..++...|
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 245788999999999999999999999999999999999999999999999999999999999997655
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.91 E-value=7.6e-23 Score=137.29 Aligned_cols=139 Identities=22% Similarity=0.515 Sum_probs=127.1
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----
Q psy6877 10 LKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE----- 82 (171)
Q Consensus 10 ~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~----- 82 (171)
++.+++++++..+++.|..+|.+++|.|+..+|..++..++ .+...+..++..++.+++|.|+|++|+..+..
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 35679999999999999999999999999999999999887 44567899999999999999999999998764
Q ss_pred -HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHH
Q psy6877 83 -HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148 (171)
Q Consensus 83 -~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 148 (171)
....+..+|+.+|.+++|+|+.+++..++..+|..++.+++..++..+|.+++|.|+|++|..++.
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 245688999999999999999999999999999999999999999999999999999999998875
No 5
>KOG0028|consensus
Probab=99.91 E-value=1.7e-22 Score=131.77 Aligned_cols=140 Identities=25% Similarity=0.478 Sum_probs=129.4
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--CHHHHHHHHHhhcCCCCCcccHHHHHHHHHH------
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGV--HSLYAQKFLERSDSNRSGDISLAEFIHYVKE------ 82 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~------ 82 (171)
...+++++.+.++..|..+|++++|+|+..||...++++|. ...++.+++..+|.++.|.|+|++|+..+..
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred CccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 34678888899999999999999999999999999999995 4667789999999999999999999998754
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 83 HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 83 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...++..+|+.+|.+++|.|+..+|+.+.+.+|++++++++.+++..+|.+.+|.|+-++|..++...
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 56889999999999999999999999999999999999999999999999999999999999998754
No 6
>KOG0031|consensus
Probab=99.90 E-value=8.2e-22 Score=127.77 Aligned_cols=138 Identities=18% Similarity=0.317 Sum_probs=124.9
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH----
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE---- 82 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~---- 82 (171)
-+-+.|+..+|.+++++|..+|.|++|.|+.++++..+.++| .+.+++..++. ..+|.|+|..|+.++..
T Consensus 21 nvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~g 96 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLNG 96 (171)
T ss_pred hHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcC
Confidence 345679999999999999999999999999999999999999 44555566555 46789999999999875
Q ss_pred --HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 83 --HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 83 --~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
+++.+..+|+.||.+++|.|..+.++.+|...|..+++++++.+++.+..+..|.|+|..|+..+...
T Consensus 97 tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 97 TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999744
No 7
>KOG0030|consensus
Probab=99.90 E-value=2e-22 Score=128.47 Aligned_cols=135 Identities=21% Similarity=0.393 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHH--HHHHHHhhcCC--CCCcccHHHHHHHHHH------
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY--AQKFLERSDSN--RSGDISLAEFIHYVKE------ 82 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~--~~~~~~~~d~~--~~~~i~~~eF~~~~~~------ 82 (171)
.+++++..+++++|..||..++|.|+..++..+++.+|.+|.+ +.+....++.+ +-.+++|++|+..+..
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 4788899999999999999999999999999999999977754 46666666665 3478999999998864
Q ss_pred --HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHH
Q psy6877 83 --HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148 (171)
Q Consensus 83 --~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 148 (171)
..+.+...+++||++++|+|...|++++|..+|+.+++++++.+++.. .|++|.|+|+.|++.+.
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 356788899999999999999999999999999999999999999988 68899999999998875
No 8
>KOG0034|consensus
Probab=99.86 E-value=3.7e-20 Score=127.17 Aligned_cols=140 Identities=25% Similarity=0.451 Sum_probs=119.1
Q ss_pred CCCHHHHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHH------HH
Q psy6877 13 KLPQEDEERLEKLFVALDTD-GNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGD-ISLAEFIHYVKE------HE 84 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-i~~~eF~~~~~~------~~ 84 (171)
.++..++..+...|.++|++ +.|.++.+||..+. .+.. .....++++.++.+++|. |+|++|+..+.. ..
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~-Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELAL-NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhc-CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH
Confidence 49999999999999999999 99999999999987 2222 334578999999988888 999999999864 34
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCC--HH----HHHHHHHHHcCCCCccccHHHHHHHHHhCCccc
Q psy6877 85 KHLRLGFSHLDKNQDGKIDLQELQKAFQEL-GIDID--EN----EAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 85 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
++++.+|++||.+++|+|+.+|+..++..+ +...+ ++ .++.++..+|.++||.|+++||++.+...|...
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~ 180 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLL 180 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHH
Confidence 689999999999999999999999999887 44444 33 467889999999999999999999998776543
No 9
>KOG0037|consensus
Probab=99.84 E-value=1.9e-19 Score=123.56 Aligned_cols=132 Identities=24% Similarity=0.357 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhh
Q psy6877 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKDFG---VHSLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHL 94 (171)
Q Consensus 18 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~F~~~ 94 (171)
.-..+...|...|.++.|.|+.+|+...|...+ ++...++.++.++|.+..|+|++.||..+|.. .+.++.+|+.|
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~-i~~Wr~vF~~~ 133 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY-INQWRNVFRTY 133 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH-HHHHHHHHHhc
Confidence 345788999999999999999999999988554 77888999999999999999999999999966 67799999999
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 95 DKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 95 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
|+|++|+|+..||+++|..+|..++++-.+.+++++|....|.|.+++|+.++...
T Consensus 134 D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 134 DRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred ccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998779999999999998654
No 10
>KOG0036|consensus
Probab=99.82 E-value=1e-18 Score=129.76 Aligned_cols=147 Identities=33% Similarity=0.592 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC---HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHH
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLG 90 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~ 90 (171)
..++-..+++..|+.+|.+++|.++..++...+..+..+ ....+.++..+|.+.+|.|+|.+|...+...+.++..+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~ 87 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRI 87 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHH
Confidence 455566788999999999999999999999999998844 34558899999999999999999999999999999999
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCcccHHHHHH
Q psy6877 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSDIREQNV 160 (171)
Q Consensus 91 F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~ 160 (171)
|+.+|.+++|.|+..|+.+.++.+|.+++++++..+++.+|.++++.|+++||..++...|..++.+.+.
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~ 157 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYD 157 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888777654
No 11
>KOG0044|consensus
Probab=99.79 E-value=6e-18 Score=116.35 Aligned_cols=140 Identities=22% Similarity=0.347 Sum_probs=117.3
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CC-HHHHHHHHHhhcCCCCCcccHHHHHHHHHH---
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VH-SLYAQKFLERSDSNRSGDISLAEFIHYVKE--- 82 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~-~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~--- 82 (171)
.-.+++++.++..+.+-|..-+ ++|.++.++|+.+++... .+ ...+..+|+.+|.+++|.|+|.||+..++.
T Consensus 18 ~~~t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r 95 (193)
T KOG0044|consen 18 VQQTKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR 95 (193)
T ss_pred HHhcCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC
Confidence 3367888888888888888754 578999999999999887 23 344589999999999999999999998864
Q ss_pred --HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 83 --HEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL----GI-------DIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 83 --~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
..+.+..+|++||.||+|+|+.+|+.++++.+ +. .-..+.++.+|+.+|.|+||.||++||......
T Consensus 96 Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 96 GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 46778889999999999999999999998886 21 123456899999999999999999999998864
Q ss_pred C
Q psy6877 150 C 150 (171)
Q Consensus 150 ~ 150 (171)
.
T Consensus 176 d 176 (193)
T KOG0044|consen 176 D 176 (193)
T ss_pred C
Confidence 4
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.49 E-value=5.2e-13 Score=106.86 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=95.5
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC-CH--HH---HHHHHHhhcCCCCCcccHHHHHHHHHH---
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGV-HS--LY---AQKFLERSDSNRSGDISLAEFIHYVKE--- 82 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~-~~--~~---~~~~~~~~d~~~~~~i~~~eF~~~~~~--- 82 (171)
+.++..++.+++++|..+|++++|.+ +..+++.+|. .+ .+ ++.++..+|.+++|.|+|+||+.++..
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 47889999999999999999999997 8888899983 33 22 578999999999999999999998864
Q ss_pred --HHHHHHHHhhhhcCCCCCcccHHHHHHHHHH-------------hCCCCCH-HHHHHHHH
Q psy6877 83 --HEKHLRLGFSHLDKNQDGKIDLQELQKAFQE-------------LGIDIDE-NEAKKLLK 128 (171)
Q Consensus 83 --~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-------------~~~~~~~-~~~~~~~~ 128 (171)
..+++..+|+.+|+|++|+|+.+||..++.. |+..++. +++..+.+
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 3567999999999999999999999999988 6666655 55666653
No 13
>KOG4223|consensus
Probab=99.49 E-value=2e-13 Score=99.09 Aligned_cols=129 Identities=31% Similarity=0.377 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----------HH
Q psy6877 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFG---VHSLYAQKFLERSDSNRSGDISLAEFIHYVKEH----------EK 85 (171)
Q Consensus 19 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~----------~~ 85 (171)
+.+-++.|+..|.|++|.++.+||..++..-. +.+-.+..-+.-.|+|++|+|+++||+.-+-.. ..
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~ 241 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLT 241 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccc
Confidence 45567899999999999999999999876654 333445667778899999999999999866431 12
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
+-...+..+|+|++|+++.+|+++.+..-+......++..++...|.|+||++|++|-+.-.
T Consensus 242 Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~ 303 (325)
T KOG4223|consen 242 EREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHY 303 (325)
T ss_pred cHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCc
Confidence 33467889999999999999999998777888889999999999999999999999877643
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.49 E-value=2.5e-13 Score=82.82 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=61.9
Q ss_pred HHHHHHHhhhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDK-NQDGKIDLQELQKAFQE-LGIDIDE-NEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~-~~~g~I~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+..+|+.||+ +++|+|+..||+.+++. +|..++. ++++.++..+|.|++|.|+|+||+.++...
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4568899999999 99999999999999999 8888888 899999999999999999999999998654
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=5.6e-13 Score=77.21 Aligned_cols=62 Identities=34% Similarity=0.691 Sum_probs=54.4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDEN----EAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
.++.+|+.+|++++|+|+.+|+..++..++...+.+ .++.+|..+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 368899999999999999999999999998665544 45566999999999999999999875
No 16
>KOG0038|consensus
Probab=99.40 E-value=2.6e-11 Score=78.62 Aligned_cols=137 Identities=22% Similarity=0.398 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCC-----CC------cccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 13 KLPQEDEERLEKLFVALDTDG-----NG------KIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~-----~g------~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
-++..++..+...|..+.++- .| .++.+.+..+ ..+.- .+.-+++...+..++.|.++|++|+..++
T Consensus 21 FFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELke-npfk~ri~e~FSeDG~GnlsfddFlDmfS 98 (189)
T KOG0038|consen 21 FFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKE-NPFKRRICEVFSEDGRGNLSFDDFLDMFS 98 (189)
T ss_pred cccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhc-ChHHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 467777878888887776531 11 2333333221 11111 12237788899999999999999998765
Q ss_pred H------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHH----HHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 82 E------HEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-GIDIDENEA----KKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 82 ~------~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~----~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
- ..-.+..+|+.||-|++++|...++...+..+ ...++++++ +.++...|.|++|++++.+|..++.+.
T Consensus 99 V~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 99 VFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 3 44567889999999999999999999999888 345777764 567788899999999999999999765
Q ss_pred C
Q psy6877 151 P 151 (171)
Q Consensus 151 ~ 151 (171)
|
T Consensus 179 P 179 (189)
T KOG0038|consen 179 P 179 (189)
T ss_pred c
Confidence 5
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=4.5e-12 Score=77.35 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=60.6
Q ss_pred HHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 84 EKHLRLGFSHLD-KNQDG-KIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 84 ~~~~~~~F~~~D-~~~~g-~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
...+..+|+.|| .+|+| +|+.+|++.+++. +|...++++++.++..+|.|++|.|+|++|+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456889999998 79999 6999999999999 788889999999999999999999999999998853
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.34 E-value=1.6e-11 Score=76.39 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
.++++++..++++|..+|.+++|.|+..++..+++.++++..++..++..++.+++|.|+|++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999998765
No 19
>KOG0377|consensus
Probab=99.32 E-value=5e-11 Score=90.07 Aligned_cols=129 Identities=20% Similarity=0.346 Sum_probs=103.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHc---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH--------------
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDF---GVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE-------------- 82 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~-------------- 82 (171)
..+...|+.+|..++|+|+..++..++... |+++.....- ....+.+|.|.|.+-...+..
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~k--la~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPK--LANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhh--ccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 456788999999999999999999887653 4555443222 223345778888777665531
Q ss_pred ---HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 83 ---HEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL----GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 83 ---~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
....+..+|+.+|.|++|.|+.+||+.+++-+ +..++++++.++-..+|.|+||.|++.||+..++..
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 34567889999999999999999999998876 557889999999999999999999999999998765
No 20
>KOG0027|consensus
Probab=99.32 E-value=7.8e-11 Score=79.33 Aligned_cols=108 Identities=26% Similarity=0.319 Sum_probs=91.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCC-----CHHHH
Q psy6877 54 LYAQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDI-----DENEA 123 (171)
Q Consensus 54 ~~~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~-----~~~~~ 123 (171)
.+.+.+|..+|.+++|.|+-.++..++.. ....+..++..+|.+++|.|+.++|..++....... +.+++
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el 87 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEEL 87 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHH
Confidence 34588999999999999999999998875 467899999999999999999999999998875432 34589
Q ss_pred HHHHHHHcCCCCccccHHHHHHHHHhCCcccHHHHHHh
Q psy6877 124 KKLLKRMDKDGSLEISFNEWRDFLLYCPFSDIREQNVS 161 (171)
Q Consensus 124 ~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~~ 161 (171)
.++|..+|.+++|.|+..++..+|.........+....
T Consensus 88 ~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~ 125 (151)
T KOG0027|consen 88 KEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKE 125 (151)
T ss_pred HHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHH
Confidence 99999999999999999999999998854443333333
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.31 E-value=2.6e-11 Score=74.01 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=59.9
Q ss_pred HHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDK-NQ-DGKIDLQELQKAFQE---LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~-~~-~g~I~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+..+|+.||. +| +|+|+.+||+++++. +|.++++++++.++..+|.|++|.|+|++|+.++...
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4557789999998 67 899999999999973 6889999999999999999999999999999998653
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.30 E-value=2.5e-11 Score=73.99 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhcC-CCCCcccHHHHHHHHHH-cC--CCH-HHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALDT-DGNGKIDIHDLSKALKD-FG--VHS-LYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~-~~~g~i~~~e~~~~l~~-~~--~~~-~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
+..+..+..+|..||+ +++|+|+..||+.++.. +| ++. ..+..++..+|.+++|.|+|+||..++..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4567889999999999 99999999999999999 87 566 78899999999999999999999998865
No 23
>KOG0037|consensus
Probab=99.30 E-value=3.2e-11 Score=83.34 Aligned_cols=121 Identities=18% Similarity=0.290 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHh
Q psy6877 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGF 91 (171)
Q Consensus 17 ~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F 91 (171)
-.++-++-+...+|.+.+|+|+..||..+.+.+ ...+.+|..+|.|++|.|+..|+...+.. ..+-+..++
T Consensus 91 Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv 166 (221)
T KOG0037|consen 91 FSIETCRLMISMFDRDNSGTIGFKEFKALWKYI----NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLV 166 (221)
T ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHH
Confidence 334455556666777777888888887776643 25577777788888888888887777654 345556677
Q ss_pred hhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCc--cccHHHHHHHH
Q psy6877 92 SHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSL--EISFNEWRDFL 147 (171)
Q Consensus 92 ~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g--~I~~~ef~~~l 147 (171)
+.||..++|.|..++|..++..+ ..+-+.|+..|.+.+| +|+|++|+.+.
T Consensus 167 ~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 167 RKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred HHhccccCCceeHHHHHHHHHHH------HHHHHHHHHhccccceeEEEeHHHHHHHh
Confidence 77777777888877777776554 2356677777777666 46777777654
No 24
>PTZ00183 centrin; Provisional
Probab=99.29 E-value=2.4e-10 Score=77.24 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHH
Q psy6877 56 AQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-GIDIDENEAKKLLKR 129 (171)
Q Consensus 56 ~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 129 (171)
+..+|..+|.+++|.|++.+|..++.. ....+..+|..+|.+++|.|+.++|..++... ......+.+..+|..
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~ 98 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRL 98 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 477889999999999999999988863 34568899999999999999999999887664 344567789999999
Q ss_pred HcCCCCccccHHHHHHHHHhC
Q psy6877 130 MDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 130 ~d~~~~g~I~~~ef~~~l~~~ 150 (171)
+|.+++|.|+..+|..++...
T Consensus 99 ~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 99 FDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred hCCCCCCcCcHHHHHHHHHHh
Confidence 999999999999999999764
No 25
>KOG4223|consensus
Probab=99.29 E-value=4.4e-11 Score=87.13 Aligned_cols=135 Identities=21% Similarity=0.258 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------------
Q psy6877 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE------------- 82 (171)
Q Consensus 18 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~------------- 82 (171)
....+..++.++|.+++|.|+..++..++.... .-..++.+-+..+|.+.+|.|+|++|...+..
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 456789999999999999999999999876544 22344577788899999999999999876541
Q ss_pred ------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCc
Q psy6877 83 ------HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG-IDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPF 152 (171)
Q Consensus 83 ------~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 152 (171)
....-..-|+.-|.|++|.+|.+||..++-.-- ..+.+=.+..-+...|.|+||.|+++||+.=|...+.
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG 231 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC
Confidence 122335679999999999999999998874432 2233335678888999999999999999999987754
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.28 E-value=3.7e-11 Score=69.47 Aligned_cols=60 Identities=32% Similarity=0.620 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--CHH----HHHHHHHhhcCCCCCcccHHHHHHHH
Q psy6877 21 RLEKLFVALDTDGNGKIDIHDLSKALKDFGV--HSL----YAQKFLERSDSNRSGDISLAEFIHYV 80 (171)
Q Consensus 21 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~----~~~~~~~~~d~~~~~~i~~~eF~~~~ 80 (171)
+++++|+.+|.+++|.|+.+||..++..++. ++. .+..++..+|.+++|.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999983 233 34666889999999999999998764
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.27 E-value=5e-11 Score=73.86 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 83 HEKHLRLGFSHLDK-NQ-DGKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 83 ~~~~~~~~F~~~D~-~~-~g~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
....+..+|..||. ++ +|.|+.+|++.+++. +|..++.++++.++..+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35668899999997 87 699999999999986 466788999999999999999999999999998864
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.26 E-value=7.2e-11 Score=72.87 Aligned_cols=67 Identities=25% Similarity=0.385 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 83 HEKHLRLGFSHLD-KNQDG-KIDLQELQKAFQE-LG----IDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 83 ~~~~~~~~F~~~D-~~~~g-~I~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
....++.+|+.|| .+++| .|+..|++.+++. +| ..++.++++.++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3467899999997 99999 5999999999986 44 3468889999999999999999999999998864
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=7.8e-11 Score=72.76 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLD-KNQDG-KIDLQELQKAFQEL-----GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D-~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+..+|+.|| .+++| +|+.+||+.++... +...++++++.++..+|.|++|.|+|+||+.++...
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456788999999 78998 59999999999763 334577899999999999999999999999998653
No 30
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.23 E-value=7.7e-10 Score=74.06 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=85.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHH
Q psy6877 56 AQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG-IDIDENEAKKLLKR 129 (171)
Q Consensus 56 ~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~ 129 (171)
.++.|..+|.+++|.|++.++..+++. ....+..+|..+|. +.|.|+..+|..++...- ..-+++++...|+.
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~ 100 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKL 100 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 477899999999999999999999864 56788999999999 999999999999998763 45568899999999
Q ss_pred HcCCCCccccHHHHHHHHHhCCcc
Q psy6877 130 MDKDGSLEISFNEWRDFLLYCPFS 153 (171)
Q Consensus 130 ~d~~~~g~I~~~ef~~~l~~~~~~ 153 (171)
+|.|++|.|+..++..++......
T Consensus 101 fD~d~dG~Is~~eL~~vl~~lge~ 124 (160)
T COG5126 101 FDKDHDGYISIGELRRVLKSLGER 124 (160)
T ss_pred hCCCCCceecHHHHHHHHHhhccc
Confidence 999999999999999999866333
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.22 E-value=2.6e-10 Score=69.54 Aligned_cols=67 Identities=19% Similarity=0.380 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----cC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALD-TDGNG-KIDIHDLSKALKD-----FG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~-----~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
+..+..++++|..+| .+++| .|+..+|+.+++. +| .++.++..+++.+|.+++|.|+|++|+.++..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 456788999999998 79999 5999999999999 77 56777999999999999999999999988765
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.21 E-value=7.2e-11 Score=65.51 Aligned_cols=52 Identities=37% Similarity=0.685 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 98 QDGKIDLQELQKAFQELGID-IDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
.+|.|+.++|+.++..+|.. ++++++..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999864
No 33
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.20 E-value=9.4e-11 Score=67.87 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=55.1
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
+.+|..+|++++|.|+.+|+..++...| .+.+++..++..++.+++|.|+|++|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5689999999999999999999999886 47888999999999999999999999998854
No 34
>PTZ00184 calmodulin; Provisional
Probab=99.18 E-value=1.5e-09 Score=72.44 Aligned_cols=95 Identities=23% Similarity=0.275 Sum_probs=81.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHH
Q psy6877 56 AQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-GIDIDENEAKKLLKR 129 (171)
Q Consensus 56 ~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 129 (171)
....|..+|.+++|.|++.+|..++.. ....+..+|..+|.+++|.|+.++|..++... ......+.+..+|..
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~ 92 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKV 92 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHh
Confidence 467888999999999999999988753 34568899999999999999999999988765 333455678999999
Q ss_pred HcCCCCccccHHHHHHHHHhC
Q psy6877 130 MDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 130 ~d~~~~g~I~~~ef~~~l~~~ 150 (171)
+|.+++|.|+.++|..++...
T Consensus 93 ~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 93 FDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred hCCCCCCeEeHHHHHHHHHHH
Confidence 999999999999999998764
No 35
>KOG0044|consensus
Probab=99.16 E-value=1.6e-09 Score=74.92 Aligned_cols=116 Identities=23% Similarity=0.250 Sum_probs=94.8
Q ss_pred CcccHHHHHHHHHHcCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHHHH------HHHHHHHHhhhhcCCCCCcccHHHH
Q psy6877 35 GKIDIHDLSKALKDFGVHSLYAQKFLERSDSN-RSGDISLAEFIHYVKE------HEKHLRLGFSHLDKNQDGKIDLQEL 107 (171)
Q Consensus 35 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~-~~~~i~~~eF~~~~~~------~~~~~~~~F~~~D~~~~g~I~~~e~ 107 (171)
..++.+.+..+.+.-..++.+++.+.+.+..+ .+|.++-++|..++.. .......+|+.+|.+++|+|+..||
T Consensus 7 ~~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Ef 86 (193)
T KOG0044|consen 7 SKLQPESLEQLVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEF 86 (193)
T ss_pred ccCCcHHHHHHHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHH
Confidence 34555556666666678899999988888777 4899999999999875 4566788999999999999999998
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 108 QKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+....-...++-+.=.|..+|.|++|.|+++|++.++...
T Consensus 87 i~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 87 ICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 8888877544455557777999999999999999999987643
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.16 E-value=2.4e-10 Score=66.16 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=55.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 23 EKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 23 ~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
+++|..+|++++|.|+.+|+..++..+|.+...++.++..++.+++|.|+|.+|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 578999999999999999999999999998888999999999999999999999988754
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.15 E-value=3.9e-10 Score=70.14 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=59.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+..+|..+|.+++|.|+.++++.+++..| ++.+++..++..++.+.+|.|+|++|+.++...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 45688999999999999999999999999865 688899999999999999999999999988643
No 38
>KOG0040|consensus
Probab=99.15 E-value=1.3e-09 Score=92.32 Aligned_cols=130 Identities=18% Similarity=0.404 Sum_probs=107.9
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCC---------HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---------SLYAQKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~---------~~~~~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
-.+.|+++..++.-+|+.||.+.+|.++..+|..+|+++|++ .+..+.++..+|++.+|.|+..+|..+|.
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 357899999999999999999999999999999999999932 34678999999999999999999999996
Q ss_pred H-------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHc----C----CCCccccHHHHHHH
Q psy6877 82 E-------HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD----K----DGSLEISFNEWRDF 146 (171)
Q Consensus 82 ~-------~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~----~~~g~I~~~ef~~~ 146 (171)
. ....+..+|+.+|. +.-+|+++++... +++++++-++..+. + ...+.++|.+|++.
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~s 2395 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNS 2395 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHH
Confidence 5 34578999999998 8999999987654 46666666665553 2 23457999999987
Q ss_pred HH
Q psy6877 147 LL 148 (171)
Q Consensus 147 l~ 148 (171)
+.
T Consensus 2396 l~ 2397 (2399)
T KOG0040|consen 2396 LF 2397 (2399)
T ss_pred Hh
Confidence 63
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=3.5e-10 Score=69.20 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhhcC--CCCCcccHHHHHHHHHH-hCCCC----CHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 83 HEKHLRLGFSHLDK--NQDGKIDLQELQKAFQE-LGIDI----DENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 83 ~~~~~~~~F~~~D~--~~~g~I~~~e~~~~l~~-~~~~~----~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
....+..+|..||+ +++|.|+.+++..+++. +|..+ +.++++.++..++.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 34568889999999 89999999999999976 45443 5889999999999999999999999999864
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.12 E-value=1.7e-09 Score=66.78 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHHc-C------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALD-TDGNG-KIDIHDLSKALKDF-G------VHSLYAQKFLERSDSNRSGDISLAEFIHYVKEH 83 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~~-~------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~ 83 (171)
+..+..+.++|..+| .+++| .|+..||+.++... + .++..+..++..+|.+++|.|+|+||+.++...
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 556788999999999 67898 59999999999762 2 356788999999999999999999999988663
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.12 E-value=4.9e-10 Score=63.28 Aligned_cols=61 Identities=36% Similarity=0.682 Sum_probs=57.5
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 87 LRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 87 ~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
+..+|..+|.+++|.|+.+++..+++..+...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999876
No 42
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.11 E-value=8.9e-10 Score=67.33 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=57.7
Q ss_pred HHHHHHHHhhh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 83 HEKHLRLGFSH-LDKNQDG-KIDLQELQKAFQEL-----GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 83 ~~~~~~~~F~~-~D~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
....+..+|+. .|.+|+| +|+.+||+.++... +...++.+++.++..+|.|++|.|+|+||+.++...
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34567889999 6777876 99999999999886 345677899999999999999999999999988643
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.09 E-value=1.8e-09 Score=66.59 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-cC------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALD-TDGNG-KIDIHDLSKALKD-FG------VHSLYAQKFLERSDSNRSGDISLAEFIHYVKEH 83 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d-~~~~g-~i~~~e~~~~l~~-~~------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~ 83 (171)
+..+..++++|..+| .+++| .|+..+++.+++. +| .+...++.++..+|.+++|.|+|++|+.++...
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 445678999999997 99999 5999999999986 54 356778999999999999999999999988763
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.08 E-value=2.9e-09 Score=65.08 Aligned_cols=68 Identities=15% Similarity=0.322 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-cC--C----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALDT--DGNGKIDIHDLSKALKD-FG--V----HSLYAQKFLERSDSNRSGDISLAEFIHYVKEH 83 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~--~~~g~i~~~e~~~~l~~-~~--~----~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~ 83 (171)
++++..++++|..+|+ +++|.|+..++..+++. +| . +...+..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5778889999999999 89999999999999976 44 2 36778999999999999999999999988764
No 45
>KOG0028|consensus
Probab=99.07 E-value=6.9e-09 Score=68.49 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=85.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHhhhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHH
Q psy6877 55 YAQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGFSHLDKNQDGKIDLQELQKAFQE-LGIDIDENEAKKLLK 128 (171)
Q Consensus 55 ~~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~ 128 (171)
.++..|..+++++.|.|++.++...+.. ...++..+..-+|+++.|.|+.++|+.++.. ++..-+.+++...|.
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afr 113 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFR 113 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3477889999999999999999666543 4567888999999999999999999999755 477779999999999
Q ss_pred HHcCCCCccccHHHHHHHHHhCCc
Q psy6877 129 RMDKDGSLEISFNEWRDFLLYCPF 152 (171)
Q Consensus 129 ~~d~~~~g~I~~~ef~~~l~~~~~ 152 (171)
.+|.|++|.||+.+|+........
T Consensus 114 l~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 114 LFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred cccccCCCCcCHHHHHHHHHHhCc
Confidence 999999999999999999987744
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=99.07 E-value=3.5e-09 Score=85.25 Aligned_cols=114 Identities=16% Similarity=0.247 Sum_probs=88.3
Q ss_pred cccHHHHHHHHHH--cCCCH---HHHHHHHHhhcCCCCCcccHHHHHHHHH------HHHHHHHHHhhhhcCCCCCcccH
Q psy6877 36 KIDIHDLSKALKD--FGVHS---LYAQKFLERSDSNRSGDISLAEFIHYVK------EHEKHLRLGFSHLDKNQDGKIDL 104 (171)
Q Consensus 36 ~i~~~e~~~~l~~--~~~~~---~~~~~~~~~~d~~~~~~i~~~eF~~~~~------~~~~~~~~~F~~~D~~~~g~I~~ 104 (171)
.++.+++...... ..+.. .+..+.|..+|.+++|.+ .......+. .....+..+|..+|.+++|.|+.
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Idf 198 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSF 198 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcH
Confidence 4555555544332 12332 345778999999999987 444444433 11223789999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 105 QELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 105 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
+||..++..++...+++++..+|..+|.|++|.|+++||..++...
T Consensus 199 dEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 199 SEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 9999999998888889999999999999999999999999999874
No 47
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.06 E-value=2.3e-09 Score=65.38 Aligned_cols=67 Identities=15% Similarity=0.403 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---cC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALDT-DG-NGKIDIHDLSKALKD---FG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~-~~-~g~i~~~e~~~~l~~---~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
++.+..+-.+|.++|. ++ +|.|+.+||+.++.. +| +++.++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 5677888999999998 66 899999999999963 56 67888999999999999999999999988765
No 48
>KOG0041|consensus
Probab=99.06 E-value=1e-09 Score=74.92 Aligned_cols=86 Identities=26% Similarity=0.417 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCC
Q psy6877 72 SLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCP 151 (171)
Q Consensus 72 ~~~eF~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 151 (171)
.|.+|..+-+.....+..+|+.||.+.||+|+..|++.++..+|.+-+---+..++..+|.|.+|+|||.+|+-++....
T Consensus 86 ~yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 86 VYTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 47888877777788899999999999999999999999999999887766789999999999999999999999998776
Q ss_pred cccHHH
Q psy6877 152 FSDIRE 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
+.+++.
T Consensus 166 agEL~~ 171 (244)
T KOG0041|consen 166 AGELQE 171 (244)
T ss_pred cccccc
Confidence 666543
No 49
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=2.1e-09 Score=68.71 Aligned_cols=63 Identities=29% Similarity=0.409 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHH
Q psy6877 82 EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148 (171)
Q Consensus 82 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 148 (171)
.....+..+|..+|.|++|.|+.+|+..+. ....+..+..+|..+|.|++|.||++||...+.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 345678899999999999999999999876 234466789999999999999999999999993
No 50
>KOG2643|consensus
Probab=99.01 E-value=5.5e-09 Score=79.05 Aligned_cols=139 Identities=20% Similarity=0.392 Sum_probs=100.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHc------CC------CH------HHH-HHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 21 RLEKLFVALDTDGNGKIDIHDLSKALKDF------GV------HS------LYA-QKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 21 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~------~~------~~------~~~-~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
.++-+|+.+|.|++|.|+.+||..+..-. |+ +. ... .-+...+..++++++++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 45678999999999999999998876332 11 11 111 2244567899999999999999998
Q ss_pred HHHHHH-HHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCCH--HHHHHHHHHHcCCCCccccHHHHHHHHHhCCcccHHH
Q psy6877 82 EHEKHL-RLGFSHLDKNQDGKIDLQELQKAFQEL-GIDIDE--NEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSDIRE 157 (171)
Q Consensus 82 ~~~~~~-~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~--~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~ 157 (171)
+...++ ..-|..+|+..+|.|+..+|..++-.. +.+... ..+..+-+.++.++. .||++||..+..-....+.-+
T Consensus 314 ~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~-gISl~Ef~~Ff~Fl~~l~dfd 392 (489)
T KOG2643|consen 314 NLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGK-GISLQEFKAFFRFLNNLNDFD 392 (489)
T ss_pred HHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCC-CcCHHHHHHHHHHHhhhhHHH
Confidence 755554 556999999999999999999998776 333222 235666677765544 599999999987766555444
Q ss_pred HHH
Q psy6877 158 QNV 160 (171)
Q Consensus 158 ~~~ 160 (171)
..+
T Consensus 393 ~Al 395 (489)
T KOG2643|consen 393 IAL 395 (489)
T ss_pred HHH
Confidence 444
No 51
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.01 E-value=4.2e-09 Score=65.19 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----cC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 17 EDEERLEKLFVALDT-DG-NGKIDIHDLSKALKD-----FG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 17 ~~~~~~~~~F~~~d~-~~-~g~i~~~e~~~~l~~-----~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
.....++++|..+|. ++ +|.|+..|+..+++. +| .+...+..++..+|.+++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 446779999999997 87 699999999999986 33 46678899999999999999999999988865
No 52
>PF14658 EF-hand_9: EF-hand domain
Probab=99.00 E-value=2.4e-09 Score=60.71 Aligned_cols=60 Identities=17% Similarity=0.424 Sum_probs=56.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHHcCCCC-ccccHHHHHHHHH
Q psy6877 89 LGFSHLDKNQDGKIDLQELQKAFQELGI-DIDENEAKKLLKRMDKDGS-LEISFNEWRDFLL 148 (171)
Q Consensus 89 ~~F~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~I~~~ef~~~l~ 148 (171)
.+|..+|+++.|.|...++..+|+.++. ..++.+++.+...+|+++. |.|+++.|+..|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4799999999999999999999999988 8889999999999999888 9999999999986
No 53
>KOG0031|consensus
Probab=99.00 E-value=8.4e-09 Score=67.64 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC-Cc
Q psy6877 74 AEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC-PF 152 (171)
Q Consensus 74 ~eF~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~-~~ 152 (171)
..|..+-..+.++++.+|..+|.|++|.|+.++++..+..+|..+++++++.++.+. .|.|+|--|+.++-.. ..
T Consensus 21 nvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~g 96 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNG 96 (171)
T ss_pred hHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcC
Confidence 457777777888999999999999999999999999999999999999999888877 5678888888877544 45
Q ss_pred ccHHHHHHhHHhh
Q psy6877 153 SDIREQNVSAQKT 165 (171)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (171)
.++.+.+..++++
T Consensus 97 tdpe~~I~~AF~~ 109 (171)
T KOG0031|consen 97 TDPEEVILNAFKT 109 (171)
T ss_pred CCHHHHHHHHHHh
Confidence 5556666555554
No 54
>KOG2643|consensus
Probab=99.00 E-value=3.8e-09 Score=79.91 Aligned_cols=129 Identities=20% Similarity=0.353 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-CCHH----HHHHHHHhhcCCCCCcccHHHHHHHHH--HHHHHHHHHhh
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFG-VHSL----YAQKFLERSDSNRSGDISLAEFIHYVK--EHEKHLRLGFS 92 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~----~~~~~~~~~d~~~~~~i~~~eF~~~~~--~~~~~~~~~F~ 92 (171)
+.++--|.++|+..+|.|+..+|..++-... .+.. ..+++-..++.+ ...|+++||..++. ...+.+..|..
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~ 396 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALR 396 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHH
Confidence 3345679999999899999999998876554 3332 235566666655 45699999999864 44566777777
Q ss_pred hhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 93 HLDKNQDGKIDLQELQKAFQEL-GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 93 ~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
.|- ...+.|+..+|+++.... |..+++..++-+|..+|.|+||.++++||+..|.+.
T Consensus 397 fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 397 FYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 774 457899999999998775 999999999999999999999999999999998765
No 55
>KOG4251|consensus
Probab=98.98 E-value=9e-09 Score=72.64 Aligned_cols=130 Identities=17% Similarity=0.247 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH----------
Q psy6877 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKDFG-----VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE---------- 82 (171)
Q Consensus 18 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~---------- 82 (171)
..+.++.+|.+.|.|.+|.|+..|++.++..-. -...+.+..|+..|++++|.|+|+||..-+..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 456789999999999999999999988876432 12234466788999999999999999764420
Q ss_pred -------------------------------------------------------HHHHHHHHhhhhcCCCCCcccHHHH
Q psy6877 83 -------------------------------------------------------HEKHLRLGFSHLDKNQDGKIDLQEL 107 (171)
Q Consensus 83 -------------------------------------------------------~~~~~~~~F~~~D~~~~g~I~~~e~ 107 (171)
...-++.+...+|++|+..++..+|
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 0122345667889999999998888
Q ss_pred HHHHHH-----hCCCCCHHH----HHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 108 QKAFQE-----LGIDIDENE----AKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 108 ~~~l~~-----~~~~~~~~~----~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
...... .|.++.+.+ ..++-..+|.|++|.++++|+..++
T Consensus 259 islpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 259 ISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred hcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 754321 244454443 4556667788999999999988885
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.97 E-value=1.5e-08 Score=61.94 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHcC-------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVA-LDTDGNG-KIDIHDLSKALKDFG-------VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 16 ~~~~~~~~~~F~~-~d~~~~g-~i~~~e~~~~l~~~~-------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
+..+..+..+|.. +|.+++| .|+.+||+.++.... .++..+..++..+|.+++|.|+|+||+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 5667889999999 6677865 999999999998862 45678899999999999999999999998765
No 57
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.96 E-value=5.6e-09 Score=63.79 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 84 EKHLRLGFSHLDKN--QDGKIDLQELQKAFQ-ELGIDID----ENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 84 ~~~~~~~F~~~D~~--~~g~I~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
...+..+|+.|+.. ++|+|+.+||+.++. .++..++ +++++.++..+|.+++|.|+|++|+.++..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45677889999976 489999999999997 5565566 889999999999999999999999998864
No 58
>KOG0034|consensus
Probab=98.89 E-value=3.9e-08 Score=67.98 Aligned_cols=92 Identities=25% Similarity=0.380 Sum_probs=76.4
Q ss_pred HHHHHhhcCCCCCc-ccHHHHHHHHHHcCC--C-HHHHHHHHHhhcCCCCCcccHHHHHHHHHH------------HHHH
Q psy6877 23 EKLFVALDTDGNGK-IDIHDLSKALKDFGV--H-SLYAQKFLERSDSNRSGDISLAEFIHYVKE------------HEKH 86 (171)
Q Consensus 23 ~~~F~~~d~~~~g~-i~~~e~~~~l~~~~~--~-~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~------------~~~~ 86 (171)
.++++.++.+++|. |+..+|...+..... + ....+-.|+.||.+++|.|+.+++..++.. ....
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 47889999988888 999999999887762 2 235677999999999999999999998753 2344
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHh
Q psy6877 87 LRLGFSHLDKNQDGKIDLQELQKAFQEL 114 (171)
Q Consensus 87 ~~~~F~~~D~~~~g~I~~~e~~~~l~~~ 114 (171)
+...|..+|.+++|.|+.+|+.+++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 5678999999999999999999998653
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.87 E-value=2e-08 Score=64.22 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy6877 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYV 80 (171)
Q Consensus 15 ~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~ 80 (171)
.+..+..+.-.|..+|.|++|.|+.+|+..+. ++.....+..++..+|.+++|.|+++||..++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45566777788888888888888888887665 34444555677777777777777777777766
No 60
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.84 E-value=2.5e-08 Score=56.13 Aligned_cols=59 Identities=29% Similarity=0.575 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy6877 22 LEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYV 80 (171)
Q Consensus 22 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~ 80 (171)
+..+|..+|.+++|.|+..++..+++.++ .+...+..++..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999987 556677889999999999999999998764
No 61
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.80 E-value=2.8e-08 Score=62.25 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
.+++++...+..+|..+++ ++|.|+..+...++...+++......||...|.+++|.++++||+-.+.-
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 5788999999999999985 68999999999999999999999999999999999999999999987643
No 62
>KOG2562|consensus
Probab=98.79 E-value=9.6e-08 Score=72.97 Aligned_cols=125 Identities=20% Similarity=0.332 Sum_probs=95.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHh----hcCCCCCcccHHHHHHHHHH-----HHHHHHHHh
Q psy6877 21 RLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLER----SDSNRSGDISLAEFIHYVKE-----HEKHLRLGF 91 (171)
Q Consensus 21 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~----~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F 91 (171)
.+.-.|-.+|++++|.|+.+++...-... ++...+.++|.. .-...+|+++|.+|+.++-. ....+..-|
T Consensus 279 viy~kFweLD~Dhd~lidk~~L~ry~d~t-lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwF 357 (493)
T KOG2562|consen 279 VIYCKFWELDTDHDGLIDKEDLKRYGDHT-LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWF 357 (493)
T ss_pred HHHHHHhhhccccccccCHHHHHHHhccc-hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhhe
Confidence 34444888999999999999987643211 455566888882 23346899999999998754 346688899
Q ss_pred hhhcCCCCCcccHHHHHHHHHHh-------C-CCCC-HHHHHHHHHHHcCCCCccccHHHHHHH
Q psy6877 92 SHLDKNQDGKIDLQELQKAFQEL-------G-IDID-ENEAKKLLKRMDKDGSLEISFNEWRDF 146 (171)
Q Consensus 92 ~~~D~~~~g~I~~~e~~~~l~~~-------~-~~~~-~~~~~~~~~~~d~~~~g~I~~~ef~~~ 146 (171)
+.+|.+++|.|+..|++-+.+.. + ..++ ++.+.++++.+.+...++|+.++|...
T Consensus 358 rclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 358 RCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred eeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 99999999999999998776553 2 2233 456788889998888999999999873
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.78 E-value=4.2e-08 Score=54.23 Aligned_cols=50 Identities=26% Similarity=0.501 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHHHHcC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 33 GNGKIDIHDLSKALKDFG---VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 33 ~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
++|.|+.++|..++..+| +++.++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998776 67888999999999999999999999998753
No 64
>KOG0041|consensus
Probab=98.71 E-value=2e-07 Score=63.87 Aligned_cols=97 Identities=18% Similarity=0.361 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHH--HHHHHhhcCCCCCcccHHHHHHHHHHH-------
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISLAEFIHYVKEH------- 83 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~--~~~~~~~d~~~~~~i~~~eF~~~~~~~------- 83 (171)
-|+..+|..+..+|..+|.+.||+|+..|++.++..+|.+.... +.++...|-|.+|+|+|.+|+-++...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc
Confidence 46778999999999999999999999999999999999766543 889999999999999999999887641
Q ss_pred HHHHHHHhh--hhcCCCCCcccHHHHHH
Q psy6877 84 EKHLRLGFS--HLDKNQDGKIDLQELQK 109 (171)
Q Consensus 84 ~~~~~~~F~--~~D~~~~g~I~~~e~~~ 109 (171)
...+..+-+ .+|...-|......|-.
T Consensus 172 ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 172 DSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred chHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 222333323 36666666666555443
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.69 E-value=2.2e-07 Score=56.69 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhcCC--CCCcccHHHHHHHHH-HcC--CC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALDTD--GNGKIDIHDLSKALK-DFG--VH----SLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~~--~~g~i~~~e~~~~l~-~~~--~~----~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
+..+..+...|..++.. ++|.|+.+||+.++. .++ ++ ...+..++..+|.+++|.|+|++|+.++..
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45677889999999976 478999999999997 444 44 677899999999999999999999998765
No 66
>PF14658 EF-hand_9: EF-hand domain
Probab=98.61 E-value=2.5e-07 Score=52.53 Aligned_cols=59 Identities=20% Similarity=0.400 Sum_probs=52.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCC-CH--HHHHHHHHhhcCCCC-CcccHHHHHHHHHH
Q psy6877 24 KLFVALDTDGNGKIDIHDLSKALKDFGV-HS--LYAQKFLERSDSNRS-GDISLAEFIHYVKE 82 (171)
Q Consensus 24 ~~F~~~d~~~~g~i~~~e~~~~l~~~~~-~~--~~~~~~~~~~d~~~~-~~i~~~eF~~~~~~ 82 (171)
.+|..||+++.|.|...++...|+.++. +| .+.+.+...+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999985 44 456999999999987 99999999998864
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=7.6e-07 Score=54.10 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-----GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+..+|..|. .+.++++..||+.++..- +..-+++.++.+|...|.|+||.|+|.||+.++...
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 345778899998 456799999999998653 334567889999999999999999999999998643
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=9.3e-08 Score=45.66 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=15.7
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy6877 87 LRLGFSHLDKNQDGKIDLQELQKAFQE 113 (171)
Q Consensus 87 ~~~~F~~~D~~~~g~I~~~e~~~~l~~ 113 (171)
++.+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 445566666666666666666655543
No 69
>KOG1029|consensus
Probab=98.56 E-value=1.7e-06 Score=70.01 Aligned_cols=132 Identities=21% Similarity=0.312 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH------------
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVK------------ 81 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~------------ 81 (171)
.|.++.....+.|..+. .+.|+|+..+-++++-..|++......||...|.|+||+++-.||.-.|.
T Consensus 10 vT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP 88 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLP 88 (1118)
T ss_pred cchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCC
Confidence 45666666667777765 36799999999999999999999999999999999999999999987664
Q ss_pred --------------------------------------------------------------------------------
Q psy6877 82 -------------------------------------------------------------------------------- 81 (171)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (171)
T Consensus 89 ~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ 168 (1118)
T KOG1029|consen 89 PVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHD 168 (1118)
T ss_pred CCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -----------------------HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccc
Q psy6877 82 -----------------------EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEI 138 (171)
Q Consensus 82 -----------------------~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I 138 (171)
.....++.+|..+|+...|++|...-+.+|..-+ ++...+..|+..-|.|+||++
T Consensus 169 ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL 246 (1118)
T KOG1029|consen 169 SSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKL 246 (1118)
T ss_pred cchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcc
Confidence 0234577899999999999999999999987654 667779999999999999999
Q ss_pred cHHHHHHHHH
Q psy6877 139 SFNEWRDFLL 148 (171)
Q Consensus 139 ~~~ef~~~l~ 148 (171)
+-+||+-.|.
T Consensus 247 ~~dEfilam~ 256 (1118)
T KOG1029|consen 247 SADEFILAMH 256 (1118)
T ss_pred cHHHHHHHHH
Confidence 9999987664
No 70
>KOG0036|consensus
Probab=98.55 E-value=2.3e-06 Score=64.78 Aligned_cols=121 Identities=21% Similarity=0.359 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHhhh
Q psy6877 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGFSH 93 (171)
Q Consensus 19 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F~~ 93 (171)
-.....+|..+|.|.+|.++.++|.+-+.. .+.+...+|..+|.+.||.|+-+|..+.+.. ..+.....|+.
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~---~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~ 126 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLDN---KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEH 126 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHHH---hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHH
Confidence 345678899999999999999999987653 4455678999999999999999998887764 45667789999
Q ss_pred hcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH------cCCCCccccHHHHHHHH
Q psy6877 94 LDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRM------DKDGSLEISFNEWRDFL 147 (171)
Q Consensus 94 ~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~------d~~~~g~I~~~ef~~~l 147 (171)
.|+++++.|+.+|+++.+... +.+.++.++..+ |.+.+..|+ ++|....
T Consensus 127 ~d~~g~~~I~~~e~rd~~ll~----p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e 181 (463)
T KOG0036|consen 127 MDKDGKATIDLEEWRDHLLLY----PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLE 181 (463)
T ss_pred hccCCCeeeccHHHHhhhhcC----ChhHHHHHHHhhhhheEEEccccccCC-cchHHHH
Confidence 999999999999999887654 355566665443 566677677 6665544
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.53 E-value=3.4e-06 Score=51.26 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG-------VHSLYAQKFLERSDSNRSGDISLAEFIHYVKEH 83 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~ 83 (171)
+..+..+-.+|..+.. +.+.++..||+.++..-- .++..+..++..+|.+++|.|+|.||..++..-
T Consensus 4 E~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 4 EHSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4556778889999984 457999999999986521 356778999999999999999999999998763
No 72
>KOG0751|consensus
Probab=98.52 E-value=1.1e-06 Score=67.95 Aligned_cols=135 Identities=16% Similarity=0.345 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhh---cCCCCCcccHHHHHHHHHHc-C---CCHHHHHHHHHhhcCCCCCcccHHHHHHH---HHH
Q psy6877 13 KLPQEDEERLEKLFVAL---DTDGNGKIDIHDLSKALKDF-G---VHSLYAQKFLERSDSNRSGDISLAEFIHY---VKE 82 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~---d~~~~g~i~~~e~~~~l~~~-~---~~~~~~~~~~~~~d~~~~~~i~~~eF~~~---~~~ 82 (171)
.+...+..+++.+|..+ +.++.-..+.++|....-.+ + .+++.++-+-...|...+|-|+|+||..+ ++.
T Consensus 26 ~lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~ 105 (694)
T KOG0751|consen 26 LLKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA 105 (694)
T ss_pred hhccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC
Confidence 34455556677666655 45677789999987664333 2 44555555555667778999999999875 344
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC------CCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 83 HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI------DIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 83 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~------~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
+......+|..||+.++|.++.+++.+++..... +.+.+-+. ..+..+....++|.+|..++...
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~---~~Fg~~~~r~~ny~~f~Q~lh~~ 176 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIK---LHFGDIRKRHLNYAEFTQFLHEF 176 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHH---HHhhhHHHHhccHHHHHHHHHHH
Confidence 6677789999999999999999999999987532 12221111 23333344456666666666543
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.47 E-value=3.2e-07 Score=43.76 Aligned_cols=29 Identities=34% Similarity=0.743 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHc
Q psy6877 21 RLEKLFVALDTDGNGKIDIHDLSKALKDF 49 (171)
Q Consensus 21 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~ 49 (171)
+++++|+.+|+|++|.|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 35677888888888888888887777653
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.45 E-value=2.8e-07 Score=44.81 Aligned_cols=30 Identities=43% Similarity=0.739 Sum_probs=24.8
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHH-HhC
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQ-ELG 115 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~-~~~ 115 (171)
+++.+|+.+|.+++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999988 554
No 75
>KOG0030|consensus
Probab=98.45 E-value=5.9e-07 Score=58.11 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCC--CCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKD--GSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~I~~~ef~~~l~~~ 150 (171)
..+++.+|..||..++|+|+..+.-++++++|.++++.++......+..+ +-.+|+|++|+-++...
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999988888766 33568888888777655
No 76
>KOG0751|consensus
Probab=98.43 E-value=2.5e-06 Score=66.00 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=76.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHH-----HHHHHHhhcCCCCCcccHHHHHHHHHH-HHHHHHHHhhhhcC
Q psy6877 23 EKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-----AQKFLERSDSNRSGDISLAEFIHYVKE-HEKHLRLGFSHLDK 96 (171)
Q Consensus 23 ~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~d~~~~~~i~~~eF~~~~~~-~~~~~~~~F~~~D~ 96 (171)
..+|..+|+.++|.++.+++..++.+..+...+ ...+-..+..+....++|.+|.+++.. ..+....+|+..|+
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~ 190 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDK 190 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555555555555555555554421100 011111223333344555555555543 33446789999999
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHc-CCCCccccHHHHHHHHHhCCccc
Q psy6877 97 NQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD-KDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 97 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
.++|.||.-+++.++-.....+...-++..+-... .+...++|+..|..+-......+
T Consensus 191 ~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~me 249 (694)
T KOG0751|consen 191 AKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNME 249 (694)
T ss_pred cCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhHH
Confidence 99999999999999888755444445555555444 44445788887776654444444
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.36 E-value=2.8e-06 Score=45.58 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 101 KIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 101 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
.++..|++.+++.+++.++++.+..+|..+|.+++|.+.-+||..+...
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999998864
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.34 E-value=1e-06 Score=42.80 Aligned_cols=30 Identities=40% Similarity=0.761 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HcC
Q psy6877 21 RLEKLFVALDTDGNGKIDIHDLSKALK-DFG 50 (171)
Q Consensus 21 ~~~~~F~~~d~~~~g~i~~~e~~~~l~-~~~ 50 (171)
+++++|..+|.+++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 79
>KOG1707|consensus
Probab=98.31 E-value=1.4e-05 Score=63.39 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=101.8
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHc-C--CCHHHH---HHHHHhhcCCC--CCcccHHHHHHHHH
Q psy6877 10 LKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDF-G--VHSLYA---QKFLERSDSNR--SGDISLAEFIHYVK 81 (171)
Q Consensus 10 ~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-~--~~~~~~---~~~~~~~d~~~--~~~i~~~eF~~~~~ 81 (171)
..+.+++..++.+.++|...|.+.+|.++..|+...-+.. + +.+... +.+....-.++ +..++...|+-+..
T Consensus 185 ~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 185 EEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 4678999999999999999999999999999998875554 3 444443 33333332232 45566666765432
Q ss_pred -----------------------------------------------HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q psy6877 82 -----------------------------------------------EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL 114 (171)
Q Consensus 82 -----------------------------------------------~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~ 114 (171)
...+.+..+|..||.|+||.++..|+..+++.+
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 135678899999999999999999999999998
Q ss_pred CCCCCHHHHHHHHH-HHcCCCCccccHHHHHHHHHhCCcccHHH
Q psy6877 115 GIDIDENEAKKLLK-RMDKDGSLEISFNEWRDFLLYCPFSDIRE 157 (171)
Q Consensus 115 ~~~~~~~~~~~~~~-~~d~~~~g~I~~~ef~~~l~~~~~~~~~~ 157 (171)
+...- ....+. .-..+..|.++|..|++.|......++..
T Consensus 345 P~~pW---~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~ 385 (625)
T KOG1707|consen 345 PGSPW---TSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRR 385 (625)
T ss_pred CCCCC---CCCcccccceecccceeehhhHHHHHHHHhhccHHH
Confidence 44320 000000 01123789999999999998876666444
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.25 E-value=1e-05 Score=50.71 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
...+..+|...+. ++|.|+.++.+.++... +++.+.+..|+...|.+++|.++.+||+-.|..
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4567788999985 68999999999999877 477899999999999999999999999988753
No 81
>KOG0169|consensus
Probab=98.16 E-value=7.9e-05 Score=60.69 Aligned_cols=138 Identities=17% Similarity=0.350 Sum_probs=111.8
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH--HHHHH
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE--HEKHL 87 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~--~~~~~ 87 (171)
.........++..+|+..|.+.+|.++..+...++..++ +....+..+++..+..+++++.+.+|..+... ....+
T Consensus 128 ~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev 207 (746)
T KOG0169|consen 128 MRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEV 207 (746)
T ss_pred hhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchH
Confidence 345556678899999999999999999999999999888 55566688888888888999999999987653 12267
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHHcCC----CCccccHHHHHHHHHhC
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKAFQELG--IDIDENEAKKLLKRMDKD----GSLEISFNEWRDFLLYC 150 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~~ 150 (171)
...|..+-. +.++++.+++..++...+ ...+.+++++|++.+... ..+.++++.|..+|...
T Consensus 208 ~~~f~~~s~-~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 208 YFLFVQYSH-GKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred HHHHHHHhC-CCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 778888754 499999999999998874 357788899999888543 34569999999999765
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.12 E-value=8.7e-06 Score=62.66 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHH
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 148 (171)
...+..+|+.+|.+++|.|+.+|+.. .+.+|..+|.|++|.|+++||...+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 45678899999999999999999842 57899999999999999999999885
No 83
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.10 E-value=4e-06 Score=38.49 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=14.0
Q ss_pred HHHhhhhcCCCCCcccHHHHHHH
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKA 110 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~ 110 (171)
+.+|+.+|.|++|.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666554
No 84
>KOG0040|consensus
Probab=98.09 E-value=1.6e-05 Score=68.61 Aligned_cols=83 Identities=24% Similarity=0.449 Sum_probs=67.5
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCcccH-
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDI-------DENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSDI- 155 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~~- 155 (171)
..++..+|+.||++++|.++..+|+.+|+.+|.++ +++.++.++..+|++.+|.|+..+|..||-.....++
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~ 2331 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENIL 2331 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccccc
Confidence 45677899999999999999999999999998765 2347999999999999999999999999988855442
Q ss_pred -HHHHHhHHhhh
Q psy6877 156 -REQNVSAQKTW 166 (171)
Q Consensus 156 -~~~~~~~~~~~ 166 (171)
.+.+..+++.+
T Consensus 2332 s~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2332 SSEEIEDAFRAL 2343 (2399)
T ss_pred chHHHHHHHHHh
Confidence 33444444443
No 85
>KOG4666|consensus
Probab=98.02 E-value=1.3e-05 Score=59.03 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH------HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy6877 55 YAQKFLERSDSNRSGDISLAEFIHYVK------EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLK 128 (171)
Q Consensus 55 ~~~~~~~~~d~~~~~~i~~~eF~~~~~------~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 128 (171)
....+|..+|.+++|.++|.+.+..+. .....++.+|+.|+.+-||.++..+|..+++.. ..+.+-.+-.+|.
T Consensus 260 ~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccch
Confidence 347789999999999999999887553 246788999999999999999999999988875 1233334677899
Q ss_pred HHcCCCCccccHHHHHHHHHhCCccc
Q psy6877 129 RMDKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 129 ~~d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
..+...+|+|+|.+|.+++...|+..
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhCchhh
Confidence 99999999999999999998776654
No 86
>KOG2562|consensus
Probab=98.00 E-value=7.6e-05 Score=57.56 Aligned_cols=95 Identities=21% Similarity=0.380 Sum_probs=63.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHH--H---H--------------HHHHHHHH---hhhhcCCCCCcccHHHHHHHHHHh
Q psy6877 57 QKFLERSDSNRSGDISLAEFIHYV--K---E--------------HEKHLRLG---FSHLDKNQDGKIDLQELQKAFQEL 114 (171)
Q Consensus 57 ~~~~~~~d~~~~~~i~~~eF~~~~--~---~--------------~~~~~~~~---F~~~D~~~~g~I~~~e~~~~l~~~ 114 (171)
+++|=.++..+.|+|+..+....- . . .......+ |-.+|+|++|.|+++++...-..
T Consensus 228 ~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~- 306 (493)
T KOG2562|consen 228 QRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH- 306 (493)
T ss_pred hhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc-
Confidence 455555566677777776655421 1 0 01222223 77789999999999998876533
Q ss_pred CCCCCHHHHHHHHHHH----cCCCCccccHHHHHHHHHhCCccc
Q psy6877 115 GIDIDENEAKKLLKRM----DKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 115 ~~~~~~~~~~~~~~~~----d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
.++.-.++.+|..+ -...+|+++|++|+.++......+
T Consensus 307 --tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~ 348 (493)
T KOG2562|consen 307 --TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD 348 (493)
T ss_pred --chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC
Confidence 35566788888833 356789999999999998764443
No 87
>KOG0046|consensus
Probab=97.96 E-value=4.1e-05 Score=59.85 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=64.6
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC-----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGV-----HSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
....++|.++..++++.|...| +++|+++..++..++...+. ..++++.++...+.+.+|+|+|++|+..+..
T Consensus 8 ~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 8 WLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 3456899999999999999999 99999999999999999873 3577899999999999999999999996643
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.92 E-value=1.7e-05 Score=36.35 Aligned_cols=24 Identities=38% Similarity=0.758 Sum_probs=17.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHH
Q psy6877 22 LEKLFVALDTDGNGKIDIHDLSKA 45 (171)
Q Consensus 22 ~~~~F~~~d~~~~g~i~~~e~~~~ 45 (171)
++++|..+|.|++|.|+.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356677777777777777777664
No 89
>KOG0377|consensus
Probab=97.88 E-value=5.2e-05 Score=58.24 Aligned_cols=97 Identities=26% Similarity=0.293 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH---------HHH
Q psy6877 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE---------HEK 85 (171)
Q Consensus 15 ~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~---------~~~ 85 (171)
+++..-+++..++.++.++ +..+-=..++..+--..+..+.+|..+|.|.+|.|+.+||...|.- ...
T Consensus 511 s~d~~v~Y~~~~~~l~~e~---~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~ 587 (631)
T KOG0377|consen 511 SDDGKVEYKSTLDNLDTEV---ILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDD 587 (631)
T ss_pred CcCcceehHhHHHHhhhhh---HHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHH
Confidence 3444455666666665432 2222123344445556667777888888888888888888876642 345
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQEL 114 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~ 114 (171)
.+....+.+|-+++|.|+..||..+++-.
T Consensus 588 ~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 588 EILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 66777788888888888888887777654
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.86 E-value=5.9e-05 Score=58.16 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q psy6877 53 SLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL 114 (171)
Q Consensus 53 ~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~ 114 (171)
...+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||..+++..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45568889999999999999999853 3567999999999999999999888653
No 91
>KOG0038|consensus
Probab=97.86 E-value=0.00018 Score=47.17 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=69.7
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcC-CCHHHH--HHHHHhhcCCCCCcccHHHHHHHHHH----------HHHHHHHH
Q psy6877 24 KLFVALDTDGNGKIDIHDLSKALKDFG-VHSLYA--QKFLERSDSNRSGDISLAEFIHYVKE----------HEKHLRLG 90 (171)
Q Consensus 24 ~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~--~~~~~~~d~~~~~~i~~~eF~~~~~~----------~~~~~~~~ 90 (171)
++...+..+|.|.++.++|..++.-+. +.|.+. ...|+.+|-++++.|.-.+....+.. .......+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 555667789999999999999987765 555544 55677889999999988888776643 12223456
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHh
Q psy6877 91 FSHLDKNQDGKIDLQELQKAFQEL 114 (171)
Q Consensus 91 F~~~D~~~~g~I~~~e~~~~l~~~ 114 (171)
...-|.||+|.|+..||.+++...
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 677799999999999999987654
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.80 E-value=8.1e-06 Score=52.09 Aligned_cols=61 Identities=28% Similarity=0.469 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHH
Q psy6877 83 HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRD 145 (171)
Q Consensus 83 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 145 (171)
....+.-.|..+|.+++|.|+..|+..+...+ ...+.-+..++..+|.|+||.||..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 45567788999999999999999998876544 33455689999999999999999999975
No 93
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.78 E-value=0.00015 Score=38.90 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 37 IDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 37 i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
++..|++.+|+.++ ++...+..+|..+|.+++|.+.-+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 57788888888888 5566678888888888888888888887764
No 94
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.72 E-value=0.00019 Score=43.12 Aligned_cols=65 Identities=15% Similarity=0.353 Sum_probs=53.7
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHHHcCC----CCccccHHHHHHHHHhCC
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQEL-GI-DIDENEAKKLLKRMDKD----GSLEISFNEWRDFLLYCP 151 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~~~ 151 (171)
++..+|..|-. +.+.||.++|..+|... +. .++.+.+..++..+.++ ..+.+++++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778999955 89999999999999876 33 46899999999998654 478999999999997654
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.72 E-value=1.9e-05 Score=50.43 Aligned_cols=65 Identities=25% Similarity=0.339 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIH 78 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~ 78 (171)
........+.=.|..+|.|++|.|+..|+..+...+.....-+...+..+|.++++.|++.|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33444556666788888888888888888776655533333356777788888888888887754
No 96
>KOG0046|consensus
Probab=97.59 E-value=0.00027 Score=55.46 Aligned_cols=70 Identities=26% Similarity=0.428 Sum_probs=59.6
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCccc
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGID---IDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
...++..|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|.|+|++|+..+......+
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 456788999999 999999999999999987654 3578899999999999999999999999776554443
No 97
>KOG4251|consensus
Probab=97.29 E-value=0.0004 Score=49.58 Aligned_cols=72 Identities=26% Similarity=0.348 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-CC--CCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCccc
Q psy6877 83 HEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-GI--DIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 83 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~--~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
....+..+|...|.+.+|+|+..|+++.+..- .+ .-+.++-+..|..+|+|++|.|+++||.--+......+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghs 173 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHS 173 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcc
Confidence 34566778888888888888888887765442 11 11223445667777888888888888876665554433
No 98
>KOG0998|consensus
Probab=97.14 E-value=0.00067 Score=57.40 Aligned_cols=134 Identities=18% Similarity=0.279 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----------
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE----------- 82 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~----------- 82 (171)
++.++...+..+|..+.++ .|.++....+.++...+++.....++|...|.+.+|.+++.+|...+..
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p 201 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEP 201 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCC
Confidence 6788888999999999865 8899999999999888899998889999999999999999999876530
Q ss_pred -------------------------------------------------------------------------------H
Q psy6877 83 -------------------------------------------------------------------------------H 83 (171)
Q Consensus 83 -------------------------------------------------------------------------------~ 83 (171)
.
T Consensus 202 ~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d 281 (847)
T KOG0998|consen 202 VPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSD 281 (847)
T ss_pred CCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHH
Confidence 1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+..+|...|.+.+|.|+..+...++... .++...+..++...+..+.|.+++.+|+-.+...
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~--gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPF--GLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccC--CCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 2345668999999999999999999888774 5777889999999999999999999888776543
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.07 E-value=0.0062 Score=41.39 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHH--HHHHHhhc---CCCCCcccHHHHHHHHHH------------
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSD---SNRSGDISLAEFIHYVKE------------ 82 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~--~~~~~~~d---~~~~~~i~~~eF~~~~~~------------ 82 (171)
..+++...-+|+|+||.|..-|....++.+|++.-.+ ..++-... ....+.+.-.-|.-.+.+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 4577788889999999999999999999999765433 11111110 111121111111100000
Q ss_pred -------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC-------CCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 83 -------HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI-------DIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 83 -------~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
..+.+..+|..|++.+.+.+|..|+.++++.... -.+.-|+..++... .+++|.+.-+......
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 2467889999999999999999999999987422 22344566666665 6789989887765543
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.05 E-value=0.0011 Score=30.36 Aligned_cols=27 Identities=41% Similarity=0.743 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 22 LEKLFVALDTDGNGKIDIHDLSKALKD 48 (171)
Q Consensus 22 ~~~~F~~~d~~~~g~i~~~e~~~~l~~ 48 (171)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777777777777777777776653
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.01 E-value=0.00094 Score=30.58 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=11.4
Q ss_pred HHhhhhcCCCCCcccHHHHHHHH
Q psy6877 89 LGFSHLDKNQDGKIDLQELQKAF 111 (171)
Q Consensus 89 ~~F~~~D~~~~g~I~~~e~~~~l 111 (171)
.+|+.+|.+++|.|+..++..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34455555555555555544444
No 102
>KOG4065|consensus
Probab=96.97 E-value=0.0047 Score=38.98 Aligned_cols=59 Identities=27% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHh------CC---C-CCHHHHHHHHHH----HcCCCCccccHHHHHHH
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKAFQEL------GI---D-IDENEAKKLLKR----MDKDGSLEISFNEWRDF 146 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~l~~~------~~---~-~~~~~~~~~~~~----~d~~~~g~I~~~ef~~~ 146 (171)
...|++.|-|+++.|+--|+...+.-. |. + .++.+++.++.. -|.|.||.|+|-||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 457999999999999999988877654 22 2 345566655554 46889999999999875
No 103
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.88 E-value=0.0088 Score=40.67 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCccc
Q psy6877 118 IDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 118 ~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
..++-++++|..++....+.+++.|...++.......
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~ 129 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNAN 129 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccC
Confidence 4567799999999988888899999999998765443
No 104
>KOG1955|consensus
Probab=96.87 E-value=0.0043 Score=48.73 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.7
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
+=++|+++.+.+...|+-..++..|.|+..--++++....++-.+..-||...|.+.+|.+++.||+..+.
T Consensus 222 pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 222 PWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred ccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 34688999999999999999999999999999999999889999999999999999999999999998764
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.82 E-value=0.0047 Score=37.01 Aligned_cols=61 Identities=13% Similarity=0.386 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcC----CCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHH
Q psy6877 21 RLEKLFVALDTDGNGKIDIHDLSKALKDFG----VHSLYAQKFLERSDSN----RSGDISLAEFIHYVKE 82 (171)
Q Consensus 21 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~d~~----~~~~i~~~eF~~~~~~ 82 (171)
++..+|..+.. +.+.++.++|...|+.-. .+...+..++..+.++ ..+.+++++|..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46788999965 788999999999998764 5677888888887543 3678888888888754
No 106
>KOG4666|consensus
Probab=96.61 E-value=0.0071 Score=45.11 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH----HHHHHHHHh
Q psy6877 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFG---VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE----HEKHLRLGF 91 (171)
Q Consensus 19 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~----~~~~~~~~F 91 (171)
...++..|..||.+++|.++..+....+.-+- .++..++--|.+++...+|.++-.+|..++.. ..-.+.-.|
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf 337 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccc
Confidence 36678899999999999999888766655443 45666788999999999999998887777653 223345679
Q ss_pred hhhcCCCCCcccHHHHHHHHHHh
Q psy6877 92 SHLDKNQDGKIDLQELQKAFQEL 114 (171)
Q Consensus 92 ~~~D~~~~g~I~~~e~~~~l~~~ 114 (171)
...+...+|+|+.++|+.+....
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhC
Confidence 99999999999999999987654
No 107
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.52 E-value=0.017 Score=38.96 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=46.4
Q ss_pred HHHHHhhc---CCCCCcccHHHHHHHHHHcC-----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 23 EKLFVALD---TDGNGKIDIHDLSKALKDFG-----VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 23 ~~~F~~~d---~~~~g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
+++|..|. ..+...++...|..+++..+ ++...+..+|..+...+...|+|++|+.++..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 45566653 45667899999999999998 56778899999987777778999999998854
No 108
>KOG1955|consensus
Probab=96.33 E-value=0.012 Score=46.27 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 82 EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 82 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+.+..-|+.+-.|-.|+|+-.--++++..- ++.-+|+..|+...|.+.||.+++.|||..|...
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 355667778999999999999999999988765 5677889999999999999999999999998654
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=96.25 E-value=0.058 Score=44.12 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCCcccHHHHHHHHHHH-------HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHHcC-----
Q psy6877 67 RSGDISLAEFIHYVKEH-------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI--DIDENEAKKLLKRMDK----- 132 (171)
Q Consensus 67 ~~~~i~~~eF~~~~~~~-------~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~----- 132 (171)
..|.++|.+|..+.... ..++..+|..+-. +.+.++.++|..+|...+. ..+.+.+..++..+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 35799999998776542 4688999999954 4478999999999988743 3566677777665421
Q ss_pred --CCCccccHHHHHHHHHh
Q psy6877 133 --DGSLEISFNEWRDFLLY 149 (171)
Q Consensus 133 --~~~g~I~~~ef~~~l~~ 149 (171)
...+.+++++|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 12345999999999974
No 110
>KOG3555|consensus
Probab=96.22 E-value=0.015 Score=43.77 Aligned_cols=63 Identities=29% Similarity=0.279 Sum_probs=54.4
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+.-+|..+|.+.+|.++..|++.+-. .-.+.-++.+|..+|...||.||-.|++..+...
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 46678899999999999999999887743 3456678999999999999999999999999876
No 111
>KOG1029|consensus
Probab=96.11 E-value=0.012 Score=48.75 Aligned_cols=65 Identities=26% Similarity=0.340 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy6877 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYV 80 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~ 80 (171)
......++++|..+|+..+|+++..+-+.+|-..+++......||..-|.|+||+++-+||+-.+
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999998655
No 112
>KOG0998|consensus
Probab=96.03 E-value=0.0086 Score=50.95 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----------
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE----------- 82 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~----------- 82 (171)
+.+.....+...|+..|..++|.|+..+-..++...|+.....-++|...|..+.|.++..+|...++.
T Consensus 5 ~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~ 84 (847)
T KOG0998|consen 5 LSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELS 84 (847)
T ss_pred CCCCccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcccCcC
Confidence 334445678899999999999999999999999999999999999999999998899999999876641
Q ss_pred ------------------------------------------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCH
Q psy6877 83 ------------------------------------------HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120 (171)
Q Consensus 83 ------------------------------------------~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~ 120 (171)
....+...|+.+... .|.++.+..+.++..- .+..
T Consensus 85 ~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~ 161 (847)
T KOG0998|consen 85 AKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPS 161 (847)
T ss_pred ccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCCh
Confidence 224455668888654 8889888888887654 4666
Q ss_pred HHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 121 NEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 121 ~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
+.+..++...|.+.+|.++..+|.-.|..
T Consensus 162 ~~l~~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 162 DVLGRIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred hhhccccccccccccCCCChhhhhhhhhH
Confidence 77889999999999999999999987753
No 113
>KOG4065|consensus
Probab=95.99 E-value=0.032 Score=35.33 Aligned_cols=65 Identities=26% Similarity=0.289 Sum_probs=41.7
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC------------CCHHHH----HHHHHhhcCCCCCcccHHH
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG------------VHSLYA----QKFLERSDSNRSGDISLAE 75 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~------------~~~~~~----~~~~~~~d~~~~~~i~~~e 75 (171)
..+||++.+ -..|...|-+++|.|+.-|+..++.... .+..+. ..+++.-|.+++|.|+|.|
T Consensus 61 a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgE 138 (144)
T KOG4065|consen 61 AKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGE 138 (144)
T ss_pred hhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHH
Confidence 356776543 3568899999999999999888765432 112222 3333344566777777777
Q ss_pred HHH
Q psy6877 76 FIH 78 (171)
Q Consensus 76 F~~ 78 (171)
|+.
T Consensus 139 flK 141 (144)
T KOG4065|consen 139 FLK 141 (144)
T ss_pred HHh
Confidence 754
No 114
>KOG0042|consensus
Probab=95.70 E-value=0.033 Score=44.71 Aligned_cols=74 Identities=28% Similarity=0.330 Sum_probs=65.7
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
.++-.++++++..++..|..+|.++.|.++..++..+++..+ ++....+.+.+..+.+-+|.+...+|.+++..
T Consensus 582 ~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 582 SIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred ccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 456678999999999999999999999999999999999987 66777788888888888999999999988764
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.45 E-value=0.19 Score=30.60 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCc
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-------GI----DIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPF 152 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 152 (171)
.++++.+|+.+ .|++|.++...+..++..+ |+ .-.+..++..|.... ....|+.+.|+.++...|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCCC
Confidence 35678889888 6888999998887776653 33 125666788887763 3456999999999987654
Q ss_pred c
Q psy6877 153 S 153 (171)
Q Consensus 153 ~ 153 (171)
.
T Consensus 79 ~ 79 (90)
T PF09069_consen 79 S 79 (90)
T ss_dssp T
T ss_pred e
Confidence 3
No 116
>KOG0035|consensus
Probab=95.44 E-value=0.1 Score=44.23 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=74.5
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHH-------HHHHHHHhhcCCCCCcccHHHHHHHHHH-
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-------YAQKFLERSDSNRSGDISLAEFIHYVKE- 82 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~d~~~~~~i~~~eF~~~~~~- 82 (171)
+...+..+..+++..|..++....|.++.+++..++-.+|.+.. ++..++...+....|.++|.+|...+..
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 45566778899999999999999999999999999999995432 2244444445555689999999998865
Q ss_pred -----HHHHHHHHhhhhcCCCCCcccHHHHHH
Q psy6877 83 -----HEKHLRLGFSHLDKNQDGKIDLQELQK 109 (171)
Q Consensus 83 -----~~~~~~~~F~~~D~~~~g~I~~~e~~~ 109 (171)
....+..+|..+-++.. +|..+|+..
T Consensus 818 ~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 YEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 34556667888866554 788888776
No 117
>KOG3555|consensus
Probab=95.24 E-value=0.042 Score=41.41 Aligned_cols=106 Identities=21% Similarity=0.224 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HHHHHHHHhhh
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFG-----VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE-HEKHLRLGFSH 93 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~-~~~~~~~~F~~ 93 (171)
.+|+.+|..+-.+.++......+...-..+. .-...+.-+|..+|.+.++.++-.|...+... .+.-++..|..
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 4578889888777666666555554433322 12345688999999999999999998887543 56778889999
Q ss_pred hcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy6877 94 LDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126 (171)
Q Consensus 94 ~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~ 126 (171)
.|...+|.|+..|.-..+..-+ ++...++..+
T Consensus 291 CD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 291 CDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred hcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 9999999999999887776654 3334444333
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.12 E-value=0.17 Score=34.12 Aligned_cols=61 Identities=16% Similarity=0.419 Sum_probs=47.1
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 90 GFSHLDKNQDGKIDLQELQKAFQELGI---DIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 90 ~F~~~D~~~~g~I~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
.|..|-..+...++...|..+++.+++ .++..+++-+|..+-..+...|+|++|+..|...
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 344444667788999999999999854 5888999999999877677789999999998654
No 119
>KOG0169|consensus
Probab=94.48 E-value=0.73 Score=38.51 Aligned_cols=93 Identities=24% Similarity=0.322 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHH-----HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy6877 54 LYAQKFLERSDSNRSGDISLAEFIHYVKE-----HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLK 128 (171)
Q Consensus 54 ~~~~~~~~~~d~~~~~~i~~~eF~~~~~~-----~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 128 (171)
..+..++...|++.+|.+++.+-..+... ....++..|+..+..+++.+...++..+....+... ++..+|.
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~ 212 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFV 212 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHH
Confidence 34588889999999999999988877643 345566778877888999999999999988775543 6888888
Q ss_pred HHcCCCCccccHHHHHHHHHhC
Q psy6877 129 RMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 129 ~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
.+..+ .+.++.+++..++...
T Consensus 213 ~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 213 QYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHhCC-CCccCHHHHHHHHHHh
Confidence 88654 7788888888888765
No 120
>KOG3866|consensus
Probab=94.36 E-value=0.35 Score=36.14 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHHHcC-CCHHHH--HHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 20 ERLEKLFVALDTD--GNGKIDIHDLSKALKDFG-VHSLYA--QKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 20 ~~~~~~F~~~d~~--~~g~i~~~e~~~~l~~~~-~~~~~~--~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
+.+.+.-++...- -+-.=|..+++.++..+. +.+... +..|...|.+++|.++-.+.-.++.
T Consensus 205 sk~EE~~krH~~HpKvnhPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 205 SKHEESLKRHNDHPKVNHPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred HHHHHHHHhhccCccCCCCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHH
Confidence 3455555444321 123346777777776653 554443 5667777888888887777666654
No 121
>KOG2243|consensus
Probab=94.16 E-value=0.11 Score=46.16 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=53.0
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCccc
Q psy6877 89 LGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 89 ~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
.-|+.||+||.|.|+..+|...+... ...+..+++-++.....|.+..++|++|+.-+. .|+.+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh-epakd 4124 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH-EPAKD 4124 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc-Cchhh
Confidence 35899999999999999999998764 345777899999999889999999999998774 34443
No 122
>KOG0042|consensus
Probab=93.60 E-value=0.19 Score=40.65 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=59.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
..+.-|..+|.++.|+++..+..++++..+.+++++.+..+....+.+.+|.++..+|..++...
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 34567999999999999999999999999989999999999999999999999999999988765
No 123
>KOG4578|consensus
Probab=93.19 E-value=0.096 Score=39.31 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=49.9
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCC
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQELGI-DIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCP 151 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 151 (171)
.+.--|..+|+|.++.|...|++.+=+.+-. .-...-...+++.+|.|+|..||++|+...+...+
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 3455699999999999999997655333311 12244568899999999999999999999986553
No 124
>KOG4578|consensus
Probab=93.14 E-value=0.05 Score=40.78 Aligned_cols=29 Identities=34% Similarity=0.345 Sum_probs=16.5
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~ 112 (171)
..-.+.+|+..|.|+|..|+.+|++..+.
T Consensus 369 rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 369 RKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred HHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 33445556666666666666666655553
No 125
>KOG3866|consensus
Probab=93.14 E-value=0.42 Score=35.77 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=51.2
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHHHcCCCCccccHHHHHHHHHhCC
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKAFQEL-----GIDIDENE-----------AKKLLKRMDKDGSLEISFNEWRDFLLYCP 151 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~l~~~-----~~~~~~~~-----------~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 151 (171)
+..|...|.+++|+++..|+..++..- ...-.+++ -+.++..+|.|.|.-|+.++|++.-....
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 567899999999999999998877543 11101111 24678889999999999999998876665
Q ss_pred cccHHHHH
Q psy6877 152 FSDIREQN 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
..+..+.|
T Consensus 327 f~~p~e~W 334 (442)
T KOG3866|consen 327 FNPPKEEW 334 (442)
T ss_pred cCCcchhh
Confidence 55444433
No 126
>KOG0035|consensus
Probab=93.10 E-value=0.54 Score=40.14 Aligned_cols=68 Identities=22% Similarity=0.192 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 83 HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE-----NEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 83 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
...+++..|+.+++...|..+.+++..++-..|.+.-. +++..++...+.+..|++++.+|...|.+.
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 35678899999999999999999999999999887654 234455556667777999999999999765
No 127
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.86 E-value=0.07 Score=30.77 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=36.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCC-------CCccccHHHHHHH
Q psy6877 85 KHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKD-------GSLEISFNEWRDF 146 (171)
Q Consensus 85 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~I~~~ef~~~ 146 (171)
+.+..+|+.+ .++.++||.++|++.+.. +.++-+...+..- ..|.++|..|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 5678899999 789999999999988532 2235555444321 2367888888753
No 128
>KOG1265|consensus
Probab=92.57 E-value=6.4 Score=34.08 Aligned_cols=121 Identities=12% Similarity=0.248 Sum_probs=85.4
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcC--CCC-----CcccHHHHHHHHHH--HHHHHHHHhhhhcCCCC
Q psy6877 29 LDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDS--NRS-----GDISLAEFIHYVKE--HEKHLRLGFSHLDKNQD 99 (171)
Q Consensus 29 ~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~--~~~-----~~i~~~eF~~~~~~--~~~~~~~~F~~~D~~~~ 99 (171)
+..+..|.|....+...+.+ +-..+.++.....+.. +.+ ...+++.|..++.. ...++..+|..+..++.
T Consensus 157 mqvn~~grip~knI~k~F~~-~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~k 235 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSA-DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKKK 235 (1189)
T ss_pred hcccccccccHHHHHHHhhc-CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCCC
Confidence 33467888888887776653 2223444444444322 122 23566777777655 34678999999999999
Q ss_pred CcccHHHHHHHHHHhCC----------CCCHHHHHHHHHHHcCC----CCccccHHHHHHHHHhC
Q psy6877 100 GKIDLQELQKAFQELGI----------DIDENEAKKLLKRMDKD----GSLEISFNEWRDFLLYC 150 (171)
Q Consensus 100 g~I~~~e~~~~l~~~~~----------~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~~ 150 (171)
-++|.++|..++..-+. .+....+..++..+..+ ..|+++-+.|++++..-
T Consensus 236 pylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 236 PYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred ccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 99999999999876422 35677889999999766 46899999999999764
No 129
>KOG2243|consensus
Probab=92.26 E-value=0.33 Score=43.44 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=49.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy6877 24 KLFVALDTDGNGKIDIHDLSKALKDFG-VHSLYAQKFLERSDSNRSGDISLAEFIHYV 80 (171)
Q Consensus 24 ~~F~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~ 80 (171)
..|+.+|+++.|.|+..+|...+..-. .+.+++.-++.....+.+...+|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 346788999999999999999887554 677888888888889999999999999765
No 130
>KOG4347|consensus
Probab=91.82 E-value=0.47 Score=38.90 Aligned_cols=96 Identities=19% Similarity=0.314 Sum_probs=67.0
Q ss_pred hcCCCHHHHHHHHHHHHhhcCC-CC--C-----------cccHHHHHHHHHHcC---CCHHHHHHHHHhhcCCCCCcccH
Q psy6877 11 KLKLPQEDEERLEKLFVALDTD-GN--G-----------KIDIHDLSKALKDFG---VHSLYAQKFLERSDSNRSGDISL 73 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~-~~--g-----------~i~~~e~~~~l~~~~---~~~~~~~~~~~~~d~~~~~~i~~ 73 (171)
...|+.++...+..+|..--.. .- | +|+..++..+++.+- .+.....++|+..|.+.+|.++|
T Consensus 495 ~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf 574 (671)
T KOG4347|consen 495 TTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTF 574 (671)
T ss_pred cCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEH
Confidence 4568888888888888653211 11 1 133444444444333 12223488999999999999999
Q ss_pred HHHHHHHHH-----HHHHHHHHhhhhcCCCCCcccHHHH
Q psy6877 74 AEFIHYVKE-----HEKHLRLGFSHLDKNQDGKIDLQEL 107 (171)
Q Consensus 74 ~eF~~~~~~-----~~~~~~~~F~~~D~~~~g~I~~~e~ 107 (171)
.+++..+.. ..+.+..+|+.+|.+++ ..+.++.
T Consensus 575 ~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 575 KDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 999987753 45678889999999999 8888887
No 131
>KOG1707|consensus
Probab=91.71 E-value=0.24 Score=40.20 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=51.0
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHS-LYAQKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
..+++.-+.-+..+|..+|.++||.++..|+..++...+-.+ ...... ...-.+..|.+++.-|+.-|.
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~-~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK-DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc-ccceecccceeehhhHHHHHH
Confidence 468888999999999999999999999999999998887333 100000 001112568999999998775
No 132
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=91.26 E-value=1.4 Score=23.87 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 61 (171)
..+|++++..|...|.. +..++..+...+...+|++...+...|.
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hccccccccccccccccccccccccCHH
Confidence 46899999999999995 5688999999999999999998876664
No 133
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=89.69 E-value=2.1 Score=23.19 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=39.3
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLER 62 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 62 (171)
..+++.+...|...|.. +.+.+..+...+...+|++...+...|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 46889999999999998 55889999999999999999988776653
No 134
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=89.01 E-value=0.33 Score=30.83 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 118 IDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 118 ~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
++++.++.++.++..|..|.|.|.+|++-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 688999999999999999999999999988644
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=88.13 E-value=2.5 Score=34.83 Aligned_cols=64 Identities=8% Similarity=0.252 Sum_probs=46.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHHcC-CCCccccHHHHHHHHHhC
Q psy6877 85 KHLRLGFSHLDKNQDGKIDLQELQKAFQELGI--DIDENEAKKLLKRMDK-DGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 85 ~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~I~~~ef~~~l~~~ 150 (171)
.++..+|..+-. ++.++.++|..+|...+. ..+.+.+..++..+.. ...+.++++.|..+|...
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 467777877753 468888888888877643 2466778888887632 245679999999999753
No 136
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.02 E-value=1.1 Score=29.70 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHHcCCCHHHHHHHHHhhcC-------CCCCcccHHHHHHHHHH------HHHHHHHHhhhhcCCC
Q psy6877 35 GKIDIHDLSKALKDFGVHSLYAQKFLERSDS-------NRSGDISLAEFIHYVKE------HEKHLRLGFSHLDKNQ 98 (171)
Q Consensus 35 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~-------~~~~~i~~~eF~~~~~~------~~~~~~~~F~~~D~~~ 98 (171)
+.|+..||..+-.-+..+...++.++..+.. +..+.|+|+.|..+|.. +.+-.+++|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4667777766554444455555666665532 23568999999999874 4555677888886544
No 137
>KOG4347|consensus
Probab=87.63 E-value=1.3 Score=36.52 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHH
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef 143 (171)
..-+..+|+.+|.+++|.|+..++...+..+...-..+-+.-+|..++.+.+ ..+.++-
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4456789999999999999999999998887544444557778888887766 5555544
No 138
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=87.52 E-value=0.63 Score=26.86 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCC-------CCcccHHHHHH
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNR-------SGDISLAEFIH 78 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~-------~~~i~~~eF~~ 78 (171)
.++.+.|+.+ .++.++|+..+|+..| ++.++.-+...+.... .|..+|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l-----~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL-----TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc-----CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4567888888 5678999999999874 4444455555443221 36788888864
No 139
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=87.31 E-value=3.2 Score=25.68 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCC---CCCcccHHHHHHHHH
Q psy6877 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSN---RSGDISLAEFIHYVK 81 (171)
Q Consensus 18 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~---~~~~i~~~eF~~~~~ 81 (171)
....+.+.|+.+.. +|.|+...|..++- ++-+++-+..+|..+... ....|+.+|...+|.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIG-M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIG-MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcC-CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 57788888888875 78999998888742 222344445565544221 134566666666654
No 140
>PLN02228 Phosphoinositide phospholipase C
Probab=86.44 E-value=4.3 Score=33.44 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHHcCC----CCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI--DIDENEAKKLLKRMDKD----GSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~~ 150 (171)
..++..+|..+-. ++.++.++|..++...+. ..+.+.+..++..+... ..|.++.++|..+|...
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 3455666666642 246777777777766532 23455677777777532 34679999999999754
No 141
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.32 E-value=1.5 Score=29.08 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHc-------CCCCccccHHHHHHHHHhCCcccHHHHHH
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD-------KDGSLEISFNEWRDFLLYCPFSDIREQNV 160 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-------~~~~g~I~~~ef~~~l~~~~~~~~~~~~~ 160 (171)
.-+.|++.||.++-+-+. -+..-+..++..+. -+..+.|+|+.|..+|...-..++.+.+-
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc 71 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLC 71 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHH
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHH
Confidence 346788888877765541 12224566666663 22344799999999998775555555544
No 142
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=85.38 E-value=3.8 Score=25.29 Aligned_cols=53 Identities=21% Similarity=0.235 Sum_probs=35.1
Q ss_pred CCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 98 QDGKIDLQELQKAFQELG--IDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
-||.++..|...+-..+. ..++.++...++..+........++.+|.+-+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 467888887665554431 25667777777777765555567788888777644
No 143
>KOG3449|consensus
Probab=84.33 E-value=8.1 Score=24.35 Aligned_cols=44 Identities=11% Similarity=0.268 Sum_probs=38.6
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 131 (171)
..+|-+.+..++-..+..+++.++...|..+..+.++.++..+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 45677777888889999999999999999999999999999983
No 144
>KOG0039|consensus
Probab=84.16 E-value=1.4 Score=36.81 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=56.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh--------CCCCCHHHHHHHHHHHcCCCCcccc
Q psy6877 68 SGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL--------GIDIDENEAKKLLKRMDKDGSLEIS 139 (171)
Q Consensus 68 ~~~i~~~eF~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~--------~~~~~~~~~~~~~~~~d~~~~g~I~ 139 (171)
++ +++++|...-...++.++..|..+|. ++|.++.+++..++... ....+.+....++...+.+..|.+.
T Consensus 2 ~~-~~~~~~~~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (646)
T KOG0039|consen 2 EG-ISFQELKITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYIT 79 (646)
T ss_pred CC-cchhhhcccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceee
Confidence 35 77787773333456778888888887 88888888888776554 1233455567777888888888777
Q ss_pred HHHHHHHHHhCC
Q psy6877 140 FNEWRDFLLYCP 151 (171)
Q Consensus 140 ~~ef~~~l~~~~ 151 (171)
+.++...+...+
T Consensus 80 ~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 80 NEDLEILLLQIP 91 (646)
T ss_pred ecchhHHHHhch
Confidence 777777765444
No 145
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.14 E-value=6.7 Score=32.55 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-C--CCCHHHHHHHHHHHcC-------CCCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELG-I--DIDENEAKKLLKRMDK-------DGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~d~-------~~~g~I~~~ef~~~l~~~ 150 (171)
..++..+|..|-. +.+.++.++|..+|...+ . ..+.+++..++..+-. -..+.++.+.|..+|...
T Consensus 28 ~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 28 VADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred cHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4567788888853 337888888888887764 2 2355666777765421 123469999999999763
No 146
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.74 E-value=7.7 Score=23.65 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-------------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy6877 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFG-------------VHSLYAQKFLERSDSNRSGDISLAEFIHYVK 81 (171)
Q Consensus 19 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-------------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~ 81 (171)
...++-+|..+ .+++|.++...|...|+.+- ....-++..|.... ....|+-.+|+.++.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 35678889988 47889999999888877632 22233344444431 234566666666554
No 147
>KOG1264|consensus
Probab=82.36 E-value=9.9 Score=32.78 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCHHH-HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhc--CCCCCcccHHHHHHHHHHHH-----H
Q psy6877 14 LPQED-EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSD--SNRSGDISLAEFIHYVKEHE-----K 85 (171)
Q Consensus 14 l~~~~-~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d--~~~~~~i~~~eF~~~~~~~~-----~ 85 (171)
.++-+ ..++++.+-..|.+....|+..+++.++...++.-+..+-+...+- .-..+.++|++|..+..... .
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccchh
Confidence 34444 4567888888888777889999999998887743332222222331 12457899999998875421 1
Q ss_pred HHH---HHhhhh--cCCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHHHcCC-----CCccccHHHHHHHHHhCC
Q psy6877 86 HLR---LGFSHL--DKNQDGKIDLQELQKAFQELGIDID---ENEAKKLLKRMDKD-----GSLEISFNEWRDFLLYCP 151 (171)
Q Consensus 86 ~~~---~~F~~~--D~~~~g~I~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~~-----~~g~I~~~ef~~~l~~~~ 151 (171)
.+. ..|-.= +...--.++..+|+++|..-+.... ...++.++..+-.| ..-.+.+.||+.++-...
T Consensus 217 ~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSre 295 (1267)
T KOG1264|consen 217 ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSRE 295 (1267)
T ss_pred hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhcc
Confidence 111 111111 1112257889999999876533221 12345555555322 233689999999997653
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=81.98 E-value=6.6 Score=22.55 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 103 DLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 103 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
+.+++..+++..|..++.+++.+++..-+..+--..+-+.+..++
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 345788888888888888888888887654444444545444444
No 149
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=81.67 E-value=3.7 Score=22.76 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=34.8
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCc----ccHHHHHHHHHHcCCCHHHHHHH
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGK----IDIHDLSKALKDFGVHSLYAQKF 59 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~----i~~~e~~~~l~~~~~~~~~~~~~ 59 (171)
+.||+++...+...|... |+ ++..+...+...+|++...++-.
T Consensus 6 T~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl~~~vvKVW 52 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGVTRKVFKVW 52 (58)
T ss_pred CCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCCCHHHeeee
Confidence 579999999999999863 45 88888888888999888766443
No 150
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=81.52 E-value=19 Score=26.67 Aligned_cols=130 Identities=13% Similarity=0.179 Sum_probs=74.1
Q ss_pred CCCcccHHHHH---HHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH----HHHHH----HHHhhhhcCCCCCc
Q psy6877 33 GNGKIDIHDLS---KALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE----HEKHL----RLGFSHLDKNQDGK 101 (171)
Q Consensus 33 ~~g~i~~~e~~---~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~----~~~~~----~~~F~~~D~~~~g~ 101 (171)
-||.++..|.. .++..+++++...+.....+........++.+|+..+.. ..+.+ ..+|.+- --||.
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA--~ADG~ 145 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA--FADGS 145 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--HhcCC
Confidence 48999999986 334446788776433444443333445888898887654 11222 3334433 25688
Q ss_pred ccHHHHHHHHHHh--CCCCCHHHHHHHHHHHcC------C--------CCccccHHHHHHHHHhCCcccHHHHHHhHHhh
Q psy6877 102 IDLQELQKAFQEL--GIDIDENEAKKLLKRMDK------D--------GSLEISFNEWRDFLLYCPFSDIREQNVSAQKT 165 (171)
Q Consensus 102 I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~------~--------~~g~I~~~ef~~~l~~~~~~~~~~~~~~~~~~ 165 (171)
++..|-. ++..+ ...++..++..+...+.. . .....++.++...+-..+..+ .+.+...++.
T Consensus 146 l~~~E~~-~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as-~~eIk~aYr~ 223 (267)
T PRK09430 146 LHPNERQ-VLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDD-DQEIKRAYRK 223 (267)
T ss_pred CCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCC-HHHHHHHHHH
Confidence 9998833 33333 235777777777765431 1 011367788888886555544 4444444443
Q ss_pred h
Q psy6877 166 W 166 (171)
Q Consensus 166 ~ 166 (171)
+
T Consensus 224 L 224 (267)
T PRK09430 224 L 224 (267)
T ss_pred H
Confidence 3
No 151
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=81.01 E-value=7.6 Score=24.38 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=25.0
Q ss_pred hhcCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHHHcCCCCccccHH
Q psy6877 93 HLDKNQDGKIDLQELQKAFQEL----------GIDIDENEAKKLLKRMDKDGSLEISFN 141 (171)
Q Consensus 93 ~~D~~~~g~I~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~g~I~~~ 141 (171)
.||+..+.+||.+++.++...- |..++...+-.++.+-..++..-++..
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 4566666666666666555441 334555555555554444444334433
No 152
>PLN02952 phosphoinositide phospholipase C
Probab=80.45 E-value=7.6 Score=32.25 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCc
Q psy6877 98 QDGKIDLQELQKAFQELGI--DIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPF 152 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 152 (171)
+.|.++.+++..+.+.+.. ....+++..+|..+..++ +.++.++|..+|.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 4689999999988887743 336789999999996544 57999999999987643
No 153
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=78.36 E-value=8.2 Score=20.54 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLER 62 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 62 (171)
.++++++..|...|.... +.+..+...+...+|++...+...|..
T Consensus 6 ~~~~~~~~~L~~~f~~~~-----~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQKNP-----YPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 488999999999998532 788999999999999998888776653
No 154
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=77.93 E-value=2.2 Score=27.22 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 51 VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 51 ~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
++.++++.+|..+-.+..|.+.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 45677888999999999999999999987753
No 155
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=77.19 E-value=6.1 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=25.5
Q ss_pred hhhcCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHHH
Q psy6877 92 SHLDKNQDGKIDLQELQKAFQEL----------GIDIDENEAKKLLKRM 130 (171)
Q Consensus 92 ~~~D~~~~g~I~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~ 130 (171)
+.||+..+.+||.+++.++.+.- |..++...+-+++..-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 46788888888888888887652 4445555555554433
No 156
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=77.14 E-value=4.6 Score=17.40 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=8.3
Q ss_pred cCCCCCcccHHHHHH
Q psy6877 95 DKNQDGKIDLQELQK 109 (171)
Q Consensus 95 D~~~~g~I~~~e~~~ 109 (171)
|.+++|.|+.-++.-
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 456666666655543
No 157
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=76.89 E-value=14 Score=23.51 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=41.2
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHH
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRD 145 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 145 (171)
..++-..-..|+..+|.++++.+++..|..+....+..++..+. | .+.++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 34455555677888999999999999999999988888888883 2 55566654
No 158
>PLN02223 phosphoinositide phospholipase C
Probab=76.45 E-value=15 Score=30.19 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHH---HHh-C-CCCCHHHHHHHHHHHcCC--------CCccccHHHHHHHHHhC
Q psy6877 84 EKHLRLGFSHLDKNQDGKIDLQELQKAF---QEL-G-IDIDENEAKKLLKRMDKD--------GSLEISFNEWRDFLLYC 150 (171)
Q Consensus 84 ~~~~~~~F~~~D~~~~g~I~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~I~~~ef~~~l~~~ 150 (171)
...++.+|..|- .+.|.++.+.+.+++ ... | ...+.++++.++..+-.. ..+.++.+.|..+|...
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 345667777773 566777777777777 333 2 245566666666655322 23569999999999764
No 159
>KOG2871|consensus
Probab=75.17 E-value=2.5 Score=32.57 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH-HHcCCCCccccHHHHHH
Q psy6877 83 HEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLK-RMDKDGSLEISFNEWRD 145 (171)
Q Consensus 83 ~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~-~~d~~~~g~I~~~ef~~ 145 (171)
....++.+|+.+|+.+.|+|+..-++.++...+..+++.+.-.++. ..++..-|.|-..+|..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 3577899999999999999999999999999876666554444443 44555555555555443
No 160
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.82 E-value=19 Score=23.92 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=41.5
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCccc
Q psy6877 89 LGFSHLDKNQDGKIDLQELQKAFQEL--GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSD 154 (171)
Q Consensus 89 ~~F~~~D~~~~g~I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 154 (171)
-+|+++. .||.++..|...+-..+ ...++.+++..++.....-+.-.+++-.|...+.+.-..+
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e 99 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEE 99 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHH
Confidence 4566665 56777777755544433 4567777788877766555555688888888877554433
No 161
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=72.65 E-value=21 Score=22.64 Aligned_cols=55 Identities=9% Similarity=0.179 Sum_probs=42.1
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 88 RLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 88 ~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
..+|-+.-..|+..+|.+++..+++..|..+....+..+++.+. | .+..+.+.--
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~----G-Kdi~eLIa~g 58 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE----G-KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHHh
Confidence 34455555678889999999999999999998888888888773 2 5566666543
No 162
>PLN02222 phosphoinositide phospholipase C 2
Probab=71.75 E-value=22 Score=29.61 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHcC----CCHHHHHHHHHhhcC-CCCCcccHHHHHHHHH
Q psy6877 21 RLEKLFVALDTDGNGKIDIHDLSKALKDFG----VHSLYAQKFLERSDS-NRSGDISLAEFIHYVK 81 (171)
Q Consensus 21 ~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~d~-~~~~~i~~~eF~~~~~ 81 (171)
++..+|..+.. ++.++.++|..+|.... .+...+..++..+.. ...+.++++.|..++.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 56666777653 47999999999998865 356677888887632 2356799999999875
No 163
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=71.60 E-value=21 Score=21.90 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=42.1
Q ss_pred CCcccHHHHHHH---HHH-cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH------HHHHHHHHhhhhcCCCCCccc
Q psy6877 34 NGKIDIHDLSKA---LKD-FGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE------HEKHLRLGFSHLDKNQDGKID 103 (171)
Q Consensus 34 ~g~i~~~e~~~~---l~~-~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~------~~~~~~~~F~~~D~~~~g~I~ 103 (171)
||.++..|...+ +.. +++++.+...+...+........++.+|...+.. ...-+..++.+-- -||.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCCC
Confidence 566676665444 333 4677777777766665555556778888776653 1222333444432 467777
Q ss_pred HHHHH
Q psy6877 104 LQELQ 108 (171)
Q Consensus 104 ~~e~~ 108 (171)
..|-.
T Consensus 91 ~~E~~ 95 (104)
T cd07313 91 EYEEH 95 (104)
T ss_pred HHHHH
Confidence 76644
No 164
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.38 E-value=25 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=18.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHH
Q psy6877 87 LRLGFSHLDKNQDGKIDLQELQKAFQE 113 (171)
Q Consensus 87 ~~~~F~~~D~~~~g~I~~~e~~~~l~~ 113 (171)
+..+...||++++|.|+.-.++-.+..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 455678888899999998888776654
No 165
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=70.74 E-value=18 Score=20.88 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHH
Q psy6877 77 IHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL----GIDIDENEAKKLLKRM 130 (171)
Q Consensus 77 ~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 130 (171)
...+......+..+...++..-.--+-..+++.++..+ |...+++.++.+|..|
T Consensus 15 ~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 15 RQLLEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 33444445556666666654444445556777776665 7777888888888765
No 166
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=69.03 E-value=18 Score=20.08 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcC
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDS 65 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~ 65 (171)
.|++.....++.+|.... +.+.+...++... ++.+++-+..++..+..
T Consensus 1 ~Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~---L~vs~~tvt~ml~~L~~ 48 (60)
T PF01325_consen 1 MLTESEEDYLKAIYELSE--EGGPVRTKDIAER---LGVSPPTVTEMLKRLAE 48 (60)
T ss_dssp TCSCHHHHHHHHHHHHHH--CTSSBBHHHHHHH---HTS-HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc--CCCCccHHHHHHH---HCCChHHHHHHHHHHHH
Confidence 367888889999999886 6778888887765 67888888777777654
No 167
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=68.77 E-value=15 Score=19.05 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCC--CCCcccHHHHHHHHHH
Q psy6877 17 EDEERLEKLFVALDTD--GNGKIDIHDLSKALKD 48 (171)
Q Consensus 17 ~~~~~~~~~F~~~d~~--~~g~i~~~e~~~~l~~ 48 (171)
..+..+..+|..+... ....++..||+.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3456677888888742 3568999999988764
No 168
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=68.77 E-value=16 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=24.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Q psy6877 100 GKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131 (171)
Q Consensus 100 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 131 (171)
-.+|.+|+..++..++..++.+++-.++..+-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 45778888888888888888888777777663
No 169
>KOG1954|consensus
Probab=66.76 E-value=11 Score=29.65 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q psy6877 23 EKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFI 77 (171)
Q Consensus 23 ~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 77 (171)
-++|..+.+ -+|+|+...-+..+....++.+...++|...|.+.+|.++-+||.
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 345555543 356666666666666666666666777777777777777777764
No 170
>PLN02228 Phosphoinositide phospholipase C
Probab=66.65 E-value=39 Score=28.06 Aligned_cols=63 Identities=22% Similarity=0.417 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC----CCHHHHHHHHHhhcCC----CCCcccHHHHHHHHH
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG----VHSLYAQKFLERSDSN----RSGDISLAEFIHYVK 81 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~d~~----~~~~i~~~eF~~~~~ 81 (171)
.++.+ +.++|..+.. ++.++.++|..+|.... .+...+..++..+... ..+.++.+.|..++.
T Consensus 21 ~~~~e---i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVS---IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHH---HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 34554 4556666653 35899999999998865 3456678888887543 346799999998874
No 171
>KOG0843|consensus
Probab=66.58 E-value=19 Score=25.01 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=39.3
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 61 (171)
.+.|+.++...+...|. +++++...|=..+.+.|++++.+++..|.
T Consensus 106 RT~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~LsetQVkvWFQ 151 (197)
T KOG0843|consen 106 RTAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSLSETQVKVWFQ 151 (197)
T ss_pred ccccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCCChhHhhhhhh
Confidence 45789999999999887 57899999999999999999999877765
No 172
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=65.56 E-value=42 Score=24.90 Aligned_cols=53 Identities=6% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 97 NQDGKIDLQELQKAFQEL--GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 97 ~~~g~I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
.-||.|+..|+. +.+.+ ...++.++-..+...+........++.+|+.-+...
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSV 121 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 457888888877 33333 234566653333333333334447788888877654
No 173
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=65.22 E-value=5.9 Score=25.80 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=26.6
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 98 QDGKIDLQELQKAFQEL--GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
-||.|+.+|...+...+ ...++..+...++..+..-....+++.+|+..+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 46666766666555444 22334445555555554433435666666666544
No 174
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=64.35 E-value=10 Score=24.64 Aligned_cols=72 Identities=22% Similarity=0.392 Sum_probs=42.9
Q ss_pred CCCcccHHHHHHHHHHc----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH------HHHHHHHHhhhhcCCCCCcc
Q psy6877 33 GNGKIDIHDLSKALKDF----GVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE------HEKHLRLGFSHLDKNQDGKI 102 (171)
Q Consensus 33 ~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~------~~~~~~~~F~~~D~~~~g~I 102 (171)
-||.++.+|...+...+ ++++.....+...++.-.....++.+|+..+.. ...-+..++.+.-. ||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCC
Confidence 47899999887765555 567777767766665444446777888766533 23334555666654 4566
Q ss_pred cHHH
Q psy6877 103 DLQE 106 (171)
Q Consensus 103 ~~~e 106 (171)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 6555
No 175
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=63.95 E-value=34 Score=21.58 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=41.1
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 90 GFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 90 ~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
++-.+..-+. -||.+.++.++...|..+.+..++.+..... | ++.++.+.-...
T Consensus 6 a~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe----g-~~idE~i~~~~~ 59 (109)
T COG2058 6 AYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE----G-VDIDEVIKNAAE 59 (109)
T ss_pred HHHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc----C-CCHHHHHHHhcc
Confidence 3444444343 8999999999999999999999999988884 3 577877765543
No 176
>KOG4070|consensus
Probab=63.64 E-value=18 Score=24.39 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=39.4
Q ss_pred HHHHHHHHhhcCCC----CC-cccHHHHHHHHHHcC------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 20 ERLEKLFVALDTDG----NG-KIDIHDLSKALKDFG------VHSLYAQKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 20 ~~~~~~F~~~d~~~----~g-~i~~~e~~~~l~~~~------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
..+.+.|+.|..-+ +| .++-.++..++...+ ++...+...|..+....-+.++|++|...+..
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~e 85 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEE 85 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHH
Confidence 44555555554323 22 466777888888876 33445566666665556678999999766543
No 177
>KOG2871|consensus
Probab=61.48 E-value=7.4 Score=30.16 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCC--C-HHHHHHHHHhhcCCCCCcccHHHHHHH
Q psy6877 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGV--H-SLYAQKFLERSDSNRSGDISLAEFIHY 79 (171)
Q Consensus 19 ~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~-~~~~~~~~~~~d~~~~~~i~~~eF~~~ 79 (171)
...+++.|+.+|+.++|+|+..-+..++..++. + +..+..+-..+++.+-|.|-..+|...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 456899999999999999999999999988882 2 223333334556666666666665543
No 178
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=61.41 E-value=30 Score=20.00 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=8.2
Q ss_pred CCCcccHHHHHHHHHHh
Q psy6877 98 QDGKIDLQELQKAFQEL 114 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~ 114 (171)
+.+.|+.+||.+.++.+
T Consensus 38 k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 38 KKKKISREEFVRKLRQI 54 (70)
T ss_pred HHCCCCHHHHHHHHHHH
Confidence 44445555555444443
No 179
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=61.01 E-value=44 Score=21.91 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=19.5
Q ss_pred cccHHHHHHHHH-HcCCCHHHHHHHHHhh
Q psy6877 36 KIDIHDLSKALK-DFGVHSLYAQKFLERS 63 (171)
Q Consensus 36 ~i~~~e~~~~l~-~~~~~~~~~~~~~~~~ 63 (171)
.+...+|..++. .++++...+..+++.+
T Consensus 38 ~l~HGef~~Wle~~~~~s~rtA~~~M~va 66 (130)
T PF11300_consen 38 LLPHGEFGKWLEEEVGYSQRTAQRFMQVA 66 (130)
T ss_pred hCCHHHHHHHHHHHcCcCHHHHHHHHHHH
Confidence 367778888887 6778877765555443
No 180
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=60.66 E-value=41 Score=21.45 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=38.9
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHH
Q psy6877 90 GFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRD 145 (171)
Q Consensus 90 ~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 145 (171)
+|-+.-..++..+|.++++.++...|..+....+..++..+. | .+..+.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~----g-K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK----G-KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 344444467778999999999999999998888888888873 2 55666664
No 181
>KOG2301|consensus
Probab=60.43 E-value=20 Score=33.49 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC----CCHHHH-HHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG----VHSLYA-QKFLERSDSNRSGDISLAEFIHYVKE 82 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~-~~~~~~~d~~~~~~i~~~eF~~~~~~ 82 (171)
.|++.+.+.+.+++..+|++..|.|...++...++.+. +.++.- +-+...+....++.|++.+-+..+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHH
Confidence 68999999999999999999999999999999999875 211111 22222333446788999887776643
No 182
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=58.35 E-value=14 Score=21.87 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCCC
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNR 67 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~ 67 (171)
..++++..+- ...|+||..++...|....+++..+..++..+...+
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPEDDLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHCC
Confidence 3444444432 246899999999999888888888888888775543
No 183
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=57.73 E-value=41 Score=20.51 Aligned_cols=52 Identities=13% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 98 QDGKIDLQELQKAFQEL-GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
-||.++..|...+-..+ ...++......+...+..-.+...++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 36677776655443332 12233333333333332222222556666666654
No 184
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=56.87 E-value=27 Score=18.16 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q psy6877 40 HDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFI 77 (171)
Q Consensus 40 ~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~ 77 (171)
+|....|..+|+++.++......... ...++.++.+
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~~~--~~~~~~e~~i 39 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKLLE--KPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHH--STTS-HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCCHHHHH
Confidence 56777888889888888777776653 2334455543
No 185
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=56.76 E-value=46 Score=20.71 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=18.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcC---CCCccccHHHHHHHHH
Q psy6877 99 DGKIDLQELQKAFQELGIDIDENEAKKLLKRMDK---DGSLEISFNEWRDFLL 148 (171)
Q Consensus 99 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~I~~~ef~~~l~ 148 (171)
+|.++...|-.++ |.+-+.+=+.++|.-... -....|+.+|+..++.
T Consensus 42 dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 42 DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 5555555555443 333333333333333321 1123455555555553
No 186
>KOG1265|consensus
Probab=55.23 E-value=64 Score=28.48 Aligned_cols=62 Identities=18% Similarity=0.331 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcC------------CCHHHHHHHHHhhcCCC----CCcccHHHHHHHHH
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFG------------VHSLYAQKFLERSDSNR----SGDISLAEFIHYVK 81 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~------------~~~~~~~~~~~~~d~~~----~~~i~~~eF~~~~~ 81 (171)
.++.++|..+..+...+++.++|..++..-. ..+..+..++..+..++ .|.++-+-|+..+.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 3566888998888889999999999987742 45677888999887764 68899999998875
No 187
>KOG0488|consensus
Probab=53.22 E-value=42 Score=25.53 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=40.1
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLER 62 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 62 (171)
-+-||..++.+|.+.|.+-- +|+..|=..+.+.||++..+++..|..
T Consensus 176 RTaFT~~Ql~~LEkrF~~QK-----YLS~~DR~~LA~~LgLTdaQVKtWfQN 222 (309)
T KOG0488|consen 176 RTAFSDHQLFELEKRFEKQK-----YLSVADRIELAASLGLTDAQVKTWFQN 222 (309)
T ss_pred hhhhhHHHHHHHHHHHHHhh-----cccHHHHHHHHHHcCCchhhHHHHHhh
Confidence 34699999999999999753 899999899999999999998887763
No 188
>PLN02230 phosphoinositide phospholipase C 4
Probab=52.47 E-value=99 Score=26.02 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHcC-----CCHHHHHHHHHhhcC-------CCCCcccHHHHHHHHH
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFG-----VHSLYAQKFLERSDS-------NRSGDISLAEFIHYVK 81 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~d~-------~~~~~i~~~eF~~~~~ 81 (171)
.++..+|..+..++ +.++.++|..+|..-. .+...+..++..+-. -+.+.++.+.|..++.
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 46778888885444 7999999999998866 244555666654321 1234699999998774
No 189
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=51.89 E-value=52 Score=19.86 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=33.8
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 100 GKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 100 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
..||..||....+..+.+++++.++.+...+-.+.-.-.+-++=..++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 458889999999999999999998888888854443333434333333
No 190
>KOG4004|consensus
Probab=51.63 E-value=6.6 Score=27.68 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=29.7
Q ss_pred CCcccHHHHHHHHH---HHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q psy6877 68 SGDISLAEFIHYVK---EHEKHLRLGFSHLDKNQDGKIDLQELQKAF 111 (171)
Q Consensus 68 ~~~i~~~eF~~~~~---~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l 111 (171)
+|.++-.|..-+-. ..+......|.-.|.|++|+|+.+|....+
T Consensus 202 d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 67777776655422 245556677888888888888887766554
No 191
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=50.94 E-value=66 Score=22.73 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=41.2
Q ss_pred CCCcccHHHHHHHHHHH--HHHHHHHhhhhcCCCCCcccHHH-HHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHH
Q psy6877 67 RSGDISLAEFIHYVKEH--EKHLRLGFSHLDKNQDGKIDLQE-LQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143 (171)
Q Consensus 67 ~~~~i~~~eF~~~~~~~--~~~~~~~F~~~D~~~~g~I~~~e-~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef 143 (171)
=+|.|+.+++...+... ..++. .+++.-.+++||..+ +-.++..++.+. ++.++-+...+..+ -.+.+|
T Consensus 10 FDGTITl~Ds~~~itdtf~~~e~k---~l~~~vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Id----p~fKef 81 (220)
T COG4359 10 FDGTITLNDSNDYITDTFGPGEWK---ALKDGVLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKID----PGFKEF 81 (220)
T ss_pred CCCceEecchhHHHHhccCchHHH---HHHHHHhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccC----ccHHHH
Confidence 36778888877766542 12223 444444677777544 445555554443 33344444434332 346777
Q ss_pred HHHHHhC
Q psy6877 144 RDFLLYC 150 (171)
Q Consensus 144 ~~~l~~~ 150 (171)
..+....
T Consensus 82 ~e~ike~ 88 (220)
T COG4359 82 VEWIKEH 88 (220)
T ss_pred HHHHHHc
Confidence 7777654
No 192
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=49.63 E-value=38 Score=20.06 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 115 GIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 115 ~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
|-.++++..+.+-..+.......|+++|++.+....
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 555666666666666655455569999999887644
No 193
>PHA02105 hypothetical protein
Probab=48.53 E-value=46 Score=18.35 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHh---CCCCCHHHHHHHHHHHcCC--CCccccHHHHHHHHHhCCcc
Q psy6877 101 KIDLQELQKAFQEL---GIDIDENEAKKLLKRMDKD--GSLEISFNEWRDFLLYCPFS 153 (171)
Q Consensus 101 ~I~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~--~~g~I~~~ef~~~l~~~~~~ 153 (171)
+++.+|++.++..- ..++..+-++.+-..+..- +--.++|+||.++|-..|..
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip~~ 61 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIPRR 61 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccccccc
Confidence 46677777776553 2245555555555555432 23368999999888665554
No 194
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=48.33 E-value=88 Score=21.52 Aligned_cols=54 Identities=7% Similarity=-0.126 Sum_probs=36.6
Q ss_pred hhcCCCHHHHHHHHHHHHhhcC-------------CCCCcccHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy6877 10 LKLKLPQEDEERLEKLFVALDT-------------DGNGKIDIHDLSKALKDFGVHSLYAQKFLERS 63 (171)
Q Consensus 10 ~~~~l~~~~~~~~~~~F~~~d~-------------~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 63 (171)
+...++++...++.++...+.. +.-|+|+.+-+..+...+|+++.++..+...|
T Consensus 12 ~~~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~~a~V~gVatFY 78 (169)
T PRK07571 12 ATHPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFY 78 (169)
T ss_pred ccCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHHHHHc
Confidence 3456777777777776666652 33567777777777777787777776665554
No 195
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=48.32 E-value=67 Score=20.17 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHH
Q psy6877 102 IDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148 (171)
Q Consensus 102 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 148 (171)
||.+++..++...|..+..+.+..+++.+. | .+.++.+.-..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa----G-k~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN----G-KNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc----C-CCHHHHHHHHH
Confidence 999999999999999999998888888873 2 56677766543
No 196
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=48.20 E-value=69 Score=20.22 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 101 KIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 101 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
.||.+++..++...|..+....+..+...+. | ++.++.+.-.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~----G-kdIeElI~~a 57 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE----D-VNIEEAIKKA 57 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHhc
Confidence 8999999999999999999988888888873 2 6677776544
No 197
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=47.04 E-value=58 Score=25.10 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=13.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 99 DGKIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 99 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.|.||.+|-...++..-.....+.++.+++.+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~l 331 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYL 331 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 44444444444444432222233344444444
No 198
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=44.33 E-value=88 Score=23.35 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHc--CCCCccccHHHHHH
Q psy6877 68 SGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD--KDGSLEISFNEWRD 145 (171)
Q Consensus 68 ~~~i~~~eF~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d--~~~~g~I~~~ef~~ 145 (171)
.|+|+..+....+.-....+...-..+-++..+. ....|+-++...++.+..... -...|.|+..++.+
T Consensus 68 gGRv~~~dL~~~LnVd~~~ie~~~~~i~~~~~~~---------~l~~gelit~~Yld~l~~Eine~Lqe~G~vsi~eLa~ 138 (272)
T PF09743_consen 68 GGRVNLVDLAQALNVDLDHIERRAQEIVKSDKSL---------QLVQGELITDSYLDSLAEEINEKLQESGQVSISELAK 138 (272)
T ss_pred CCceEHHHHHHhcCcCHHHHHHHHHHHHhCCCcE---------EEECCEEccHHHHHHHHHHHHHHHHHcCeEeHHHHHH
Confidence 4778887777666543333332222221121111 001144455555555555553 13456777777766
Q ss_pred HH
Q psy6877 146 FL 147 (171)
Q Consensus 146 ~l 147 (171)
-+
T Consensus 139 ~~ 140 (272)
T PF09743_consen 139 QY 140 (272)
T ss_pred hc
Confidence 55
No 199
>KOG4718|consensus
Probab=43.58 E-value=1.1e+02 Score=22.05 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=35.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcCC-CCCcccHHHHHHH---HHHcCCCHHHHHHHHHhh
Q psy6877 7 EAMLKLKLPQEDEERLEKLFVALDTD-GNGKIDIHDLSKA---LKDFGVHSLYAQKFLERS 63 (171)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~F~~~d~~-~~g~i~~~e~~~~---l~~~~~~~~~~~~~~~~~ 63 (171)
.+.|++.+++.+++-++++...+-.. ..+.-+..-+... ++.-++.++.++.++..+
T Consensus 86 ~SkmaT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf 146 (235)
T KOG4718|consen 86 DSKMATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKF 146 (235)
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46789999999999999888876544 3333222222222 222346777776666655
No 200
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=43.48 E-value=53 Score=22.94 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=22.1
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Q psy6877 95 DKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131 (171)
Q Consensus 95 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 131 (171)
..+.+|+++.+++...+..-+..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3567888888888888777666677888888887654
No 201
>KOG1954|consensus
Probab=43.18 E-value=43 Score=26.48 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHH
Q psy6877 87 LRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRD 145 (171)
Q Consensus 87 ~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 145 (171)
+..+|-.+. .-+|+|+-..-+.-+- +..+.+..+-.+++..|.|.||.++-+||.-
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 445565553 3567888766655443 3467788899999999999999999999974
No 202
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.48 E-value=59 Score=22.60 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=20.9
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 96 KNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 96 ~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.|.+|+++.+++...++.-+..++.+++.++...=
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 35667777777766665444455666666555543
No 203
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=41.48 E-value=85 Score=19.39 Aligned_cols=77 Identities=8% Similarity=0.228 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC
Q psy6877 36 KIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG 115 (171)
Q Consensus 36 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 115 (171)
.++..+++.+.+.+|++...+..+-.....+ ..+.-.+++...... ....|. ...+...|+.++
T Consensus 17 ~~~~~~wK~faR~lglse~~Id~I~~~~~~d-----~~Eq~~qmL~~W~~~---------~G~~a~--~~~Li~aLr~~~ 80 (97)
T cd08316 17 VMTLKDVKKFVRKSGLSEPKIDEIKLDNPQD-----TAEQKVQLLRAWYQS---------HGKTGA--YRTLIKTLRKAK 80 (97)
T ss_pred HcCHHHHHHHHHHcCCCHHHHHHHHHcCCCC-----hHHHHHHHHHHHHHH---------hCCCch--HHHHHHHHHHcc
Confidence 5677888999999999998887765433221 245544444432221 112332 467778888888
Q ss_pred CCCCHHHHHHHHH
Q psy6877 116 IDIDENEAKKLLK 128 (171)
Q Consensus 116 ~~~~~~~~~~~~~ 128 (171)
.....+.+..++.
T Consensus 81 l~~~Ad~I~~~l~ 93 (97)
T cd08316 81 LCTKADKIQDIIE 93 (97)
T ss_pred chhHHHHHHHHHH
Confidence 7766666665543
No 204
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=41.46 E-value=68 Score=18.21 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.+-.|+.+-++..+...|.++|+..+..++...
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356799999999999999999999999888765
No 205
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=41.31 E-value=70 Score=19.31 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 102 IDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 102 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
|+.+++.++.+-....+++++.+.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 56778888887778888888876655555
No 206
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=40.94 E-value=1.4e+02 Score=21.89 Aligned_cols=55 Identities=5% Similarity=0.108 Sum_probs=33.2
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSN 66 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~ 66 (171)
+....++++++..++++|+.+=.. .++.++-...++......++++.+.+.+...
T Consensus 195 l~r~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~s 249 (255)
T PRK12461 195 LRRRGFSSRAIRALKRAYKIIYRS---GLSVQQAVAELELQQFESPEVEELIDFIKAS 249 (255)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhccCCHHHHHHHHHHHcc
Confidence 456689999999999999886422 2344554444443333344456566665443
No 207
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=40.49 E-value=81 Score=19.04 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 101 KIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 101 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.|+.++++++.+.....+++++.+.+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 478899999988888888888876665555
No 208
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=39.40 E-value=83 Score=18.69 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=32.9
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSD 64 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d 64 (171)
+--.+++.+++..++++|+.+=..+ .+.++-...+....-..+.++.+...+.
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEYPDSPEVREIVDFIR 75 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3456899999999999999875432 4666655555553333445566665554
No 209
>KOG0493|consensus
Probab=39.00 E-value=87 Score=23.24 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 61 (171)
+-||.+++..|+.-|+. +-+|+...=+.+...|+++..+++..|.
T Consensus 251 TAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgLNEsQIKIWFQ 295 (342)
T KOG0493|consen 251 TAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGLNESQIKIWFQ 295 (342)
T ss_pred ccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCcCHHHhhHHhh
Confidence 45889999999888874 4588888778888888999888876664
No 210
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=38.87 E-value=63 Score=21.47 Aligned_cols=31 Identities=13% Similarity=0.352 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Q psy6877 102 IDLQELQKAFQELGIDIDENEAKKLLKRMDK 132 (171)
Q Consensus 102 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 132 (171)
.|.+++..+...+..++++++++.++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3567777776666667778888888777764
No 211
>KOG4286|consensus
Probab=38.66 E-value=2.7e+02 Score=24.35 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCC
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGS 135 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 135 (171)
.+...+++||..++|.|..-+|+-.+-.+.....++.+..+|..+..++.
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s 520 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS 520 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh
Confidence 34667899999999999999998777666444455567799999865444
No 212
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=38.65 E-value=34 Score=20.13 Aligned_cols=28 Identities=7% Similarity=-0.004 Sum_probs=20.7
Q ss_pred HcCCCCccccHHHHHHHHHhCCcccHHH
Q psy6877 130 MDKDGSLEISFNEWRDFLLYCPFSDIRE 157 (171)
Q Consensus 130 ~d~~~~g~I~~~ef~~~l~~~~~~~~~~ 157 (171)
...|..|.|+++.|++.+......++..
T Consensus 11 ~~~n~~G~iTl~gfLa~W~l~T~ld~~~ 38 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWSLTTLLDPKR 38 (76)
T ss_pred eEEcCCCcCcHHHHHHHHHHHHHhCHHH
Confidence 3467899999999999987665555443
No 213
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=37.18 E-value=1.3e+02 Score=20.12 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=20.0
Q ss_pred HHHhCCCCCHHHHHHHHHH----------HcCCCCccccHHHHHHH
Q psy6877 111 FQELGIDIDENEAKKLLKR----------MDKDGSLEISFNEWRDF 146 (171)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~----------~d~~~~g~I~~~ef~~~ 146 (171)
++.+|..++++++..++.. +-.+..|..+-..+..+
T Consensus 99 ~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 99 FEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 4445777777777666611 11345666666555544
No 214
>PRK00523 hypothetical protein; Provisional
Probab=37.11 E-value=87 Score=18.22 Aligned_cols=33 Identities=12% Similarity=0.353 Sum_probs=28.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.+-.|+.+-++..+...|.+.|+..+..++...
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456799999999999999999999999988876
No 215
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=36.73 E-value=77 Score=17.88 Aligned_cols=36 Identities=19% Similarity=0.453 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCC
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKD 133 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 133 (171)
.++.++..++.+.+...|..++++.+..-+..++.+
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD 45 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC
Confidence 557788888888888888888888888888877643
No 216
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=36.39 E-value=1.3e+02 Score=19.89 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHcC-----------CCHHHHHHHHHhhcCCCCC-cccHHHHHH
Q psy6877 33 GNGKIDIHDLSKALKDFG-----------VHSLYAQKFLERSDSNRSG-DISLAEFIH 78 (171)
Q Consensus 33 ~~g~i~~~e~~~~l~~~~-----------~~~~~~~~~~~~~d~~~~~-~i~~~eF~~ 78 (171)
|+..||.+||..++..-. +++..++++...+...+.+ .++..|-+.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr 137 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALR 137 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHH
Confidence 455677777777766532 5667777777766655444 366666544
No 217
>PLN02223 phosphoinositide phospholipase C
Probab=36.30 E-value=2.1e+02 Score=23.82 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHc-------CCCHHHHHHHHHhhcCC--------CCCcccHHHHHHHHHH
Q psy6877 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDF-------GVHSLYAQKFLERSDSN--------RSGDISLAEFIHYVKE 82 (171)
Q Consensus 20 ~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~d~~--------~~~~i~~~eF~~~~~~ 82 (171)
..++.+|..+. .+.|.++.+.+...+.-+ +.+...++.++..+-.. ..+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 34567777774 567899999998888333 25566666666644322 2256999999998754
No 218
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=35.82 E-value=83 Score=17.58 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=7.5
Q ss_pred CCCCCHHHHHHHHHHHc
Q psy6877 115 GIDIDENEAKKLLKRMD 131 (171)
Q Consensus 115 ~~~~~~~~~~~~~~~~d 131 (171)
|..++.+++..++..+-
T Consensus 12 g~~Ls~~e~~~~~~~i~ 28 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAIL 28 (66)
T ss_dssp T----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 44555666666665554
No 219
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=35.10 E-value=84 Score=25.65 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHH--HHHHHHHhhcCCCCCcccHHHHHHHHHH---HHHHHH
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL--YAQKFLERSDSNRSGDISLAEFIHYVKE---HEKHLR 88 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~--~~~~~~~~~d~~~~~~i~~~eF~~~~~~---~~~~~~ 88 (171)
+..+..+....+|...-+.+...++..++..++.++|..-. +.-..|...+. +...+.|..++..... .++.++
T Consensus 479 l~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~-s~~gv~yl~v~~~i~sel~D~d~v~ 557 (612)
T COG5069 479 LVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAG-SVSGVFYLDVLKGIHSELVDYDLVT 557 (612)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcc-ccccchHHHHHHHHhhhhcChhhhh
Confidence 44555566677888877777778999999999999984322 22222322221 1224777777766544 234445
Q ss_pred HHhhhhc
Q psy6877 89 LGFSHLD 95 (171)
Q Consensus 89 ~~F~~~D 95 (171)
.+|..++
T Consensus 558 ~~~~~f~ 564 (612)
T COG5069 558 RGFTEFD 564 (612)
T ss_pred hhHHHHH
Confidence 5555554
No 220
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=35.06 E-value=1e+02 Score=18.56 Aligned_cols=51 Identities=22% Similarity=0.097 Sum_probs=32.1
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhC
Q psy6877 100 GKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150 (171)
Q Consensus 100 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 150 (171)
-.|+-.+|+..+..+-......+..++=..+|...++.||.=||-.+.+.-
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 446666777777666322333456677777788888888887777776544
No 221
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=34.73 E-value=49 Score=15.76 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=8.8
Q ss_pred CCcccHHHHHHHHHH
Q psy6877 99 DGKIDLQELQKAFQE 113 (171)
Q Consensus 99 ~g~I~~~e~~~~l~~ 113 (171)
.|.|+.+++.++...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 456666666665544
No 222
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=34.73 E-value=1.7e+02 Score=20.92 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCCHH
Q psy6877 39 IHDLSKALKDFGVHSL 54 (171)
Q Consensus 39 ~~e~~~~l~~~~~~~~ 54 (171)
..+|..++..+|++|.
T Consensus 60 r~~f~~~~~~lGvdp~ 75 (223)
T PF04157_consen 60 RSQFQSMCASLGVDPL 75 (223)
T ss_dssp HHHHHHHHHHHT--CH
T ss_pred HHHHHHHHHHcCCCcc
Confidence 3578888888886653
No 223
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=34.53 E-value=1.6e+02 Score=20.36 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHH
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQ 57 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~ 57 (171)
+++++-+.++-++|..+-.+ ++-+...++..++..|.+|....+
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~cfT~ 50 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPKCFTK 50 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCChHHHH
Confidence 67888889999999988643 778999999999999998876643
No 224
>KOG0850|consensus
Probab=34.25 E-value=80 Score=22.96 Aligned_cols=44 Identities=7% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 61 (171)
-.+.-++..|.+.|++.+ +|-..|=..+...||++..+++..|.
T Consensus 128 IYSS~QLqaL~rRFQkTQ-----YLALPERAeLAAsLGLTQTQVKIWFQ 171 (245)
T KOG0850|consen 128 IYSSLQLQALNRRFQQTQ-----YLALPERAELAASLGLTQTQVKIWFQ 171 (245)
T ss_pred cccHHHHHHHHHHHhhcc-----hhcCcHHHHHHHHhCCchhHhhhhhh
Confidence 456678888999998754 66666767777789999888877665
No 225
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=34.09 E-value=1.5e+02 Score=19.93 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=21.8
Q ss_pred CCCcccHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy6877 33 GNGKIDIHDLSKALKDFGVHSLYAQKFLERS 63 (171)
Q Consensus 33 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 63 (171)
.-|+|+.+-+..+...+++++.++..+...|
T Consensus 34 ~~g~ip~~~~~~iA~~l~v~~~~v~~v~tFY 64 (154)
T PRK07539 34 QRGWVPDEAIEAVADYLGMPAIDVEEVATFY 64 (154)
T ss_pred HhCCCCHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3577888888888777888877775555444
No 226
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=33.51 E-value=1.3e+02 Score=19.04 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHH
Q psy6877 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA 56 (171)
Q Consensus 14 l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~ 56 (171)
++++......+....+=...+|.++..+++.+....|++..++
T Consensus 42 ~~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~gltq~~l 84 (127)
T TIGR03830 42 LDPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKLGLSQREA 84 (127)
T ss_pred EcHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcCCCHHHH
Confidence 3444544544444443345667777778877777777766554
No 227
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=33.46 E-value=57 Score=19.95 Aligned_cols=16 Identities=50% Similarity=0.470 Sum_probs=8.0
Q ss_pred CCcccHHHHHHHHHHh
Q psy6877 99 DGKIDLQELQKAFQEL 114 (171)
Q Consensus 99 ~g~I~~~e~~~~l~~~ 114 (171)
||.++.+|...+...+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 4555555555444443
No 228
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=32.63 E-value=60 Score=21.59 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.4
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcC
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDT 31 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~ 31 (171)
+....+|++++..++..|...-.
T Consensus 6 Ll~~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 6 LLSAGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhc
Confidence 45678999999999999988654
No 229
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=32.33 E-value=1.3e+02 Score=18.88 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 101 KIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 101 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
.||.+.+..++...|..+....+..+...+. | .+.++.+.-...
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~----g-k~i~eli~~~~~ 59 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE----G-VNIEEAIKKAAA 59 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc----C-CCHHHHHHhhhc
Confidence 8999999999999999998888888888883 2 566777755543
No 230
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=32.04 E-value=90 Score=18.84 Aligned_cols=9 Identities=33% Similarity=0.349 Sum_probs=5.0
Q ss_pred ccHHHHHHH
Q psy6877 71 ISLAEFIHY 79 (171)
Q Consensus 71 i~~~eF~~~ 79 (171)
|++++|...
T Consensus 77 it~~e~~~a 85 (87)
T PF13331_consen 77 ITREEFEEA 85 (87)
T ss_pred CCHHHHHHH
Confidence 556665544
No 231
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=31.76 E-value=98 Score=17.21 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccHHHHH
Q psy6877 16 QEDEERLEKLFVALDTDGNGKIDIHDLS 43 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~~~~g~i~~~e~~ 43 (171)
+.+..++.+.+..+..+....++.+++.
T Consensus 30 ~~~~~el~~R~~~~~~g~~~~i~~eev~ 57 (63)
T TIGR02574 30 EAQKAELDRRLADYKADPSKASPWEEVR 57 (63)
T ss_pred HHHHHHHHHHHHHHHcCCcCCCCHHHHH
Confidence 3334444444444444434444444433
No 232
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=31.22 E-value=29 Score=21.03 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.5
Q ss_pred cCCCCCcccHHHHHHH
Q psy6877 95 DKNQDGKIDLQELQKA 110 (171)
Q Consensus 95 D~~~~g~I~~~e~~~~ 110 (171)
|.++.|.||+..++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 5678999999988876
No 233
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.07 E-value=1.6e+02 Score=19.31 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=35.0
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy6877 10 LKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS 63 (171)
Q Consensus 10 ~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 63 (171)
|+..+|+++..++....-.+-+ ..|.+|..++... .|.+...++..+..+
T Consensus 1 Ma~~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~---TGasR~Tvk~~lreL 50 (127)
T PF06163_consen 1 MARVFTPEEREELKARIVELVR-EHGRITIKQLVAK---TGASRNTVKRYLREL 50 (127)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHH---HCCCHHHHHHHHHHH
Confidence 4567899998888766655543 5789998887765 567776666655554
No 234
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=30.99 E-value=1.4e+02 Score=18.83 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHH
Q psy6877 101 KIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148 (171)
Q Consensus 101 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 148 (171)
.||.+.+..++...|..+....+..+...+. | .+.++.+.-..
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~----g-kdIeElIa~~~ 58 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE----E-VNIDEAIKKAA 58 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc----C-CCHHHHHHhcc
Confidence 8999999999999999998888888888883 2 66777776543
No 235
>KOG4403|consensus
Probab=30.90 E-value=2.9e+02 Score=22.37 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCCCcccHHHHHHHHHHcC------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH------HHHHHHHhhhhcCCCC
Q psy6877 32 DGNGKIDIHDLSKALKDFG------VHSLYAQKFLERSDSNRSGDISLAEFIHYVKEH------EKHLRLGFSHLDKNQD 99 (171)
Q Consensus 32 ~~~g~i~~~e~~~~l~~~~------~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~~------~~~~~~~F~~~D~~~~ 99 (171)
+|+...+..||+.+..... +.-+-++.|-+.+|.|.+|.|+.+|=-.+++.. ...-...|.- .+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cc
Confidence 3444555556554432221 222334666677788888999987766666541 1111223332 46
Q ss_pred CcccHHHHHHHHHHh-CCCCCHHHHHHHH
Q psy6877 100 GKIDLQELQKAFQEL-GIDIDENEAKKLL 127 (171)
Q Consensus 100 g~I~~~e~~~~l~~~-~~~~~~~~~~~~~ 127 (171)
..|+.+++...+..- -.+.+.++.-+++
T Consensus 116 ~~ItVedLWeaW~~Sev~nWT~e~tvqWL 144 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESEVHNWTNERTVQWL 144 (575)
T ss_pred cceeHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 679999988887664 2344544443333
No 236
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.87 E-value=87 Score=16.34 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=18.9
Q ss_pred CCCccc-HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 98 QDGKID-LQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 98 ~~g~I~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
..|.|+ ..++.+-+...|..++++.++.++..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 456665 223333344447777877777776643
No 237
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=30.73 E-value=1.2e+02 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy6877 104 LQELQKAFQELGIDIDENEAKKLLKR 129 (171)
Q Consensus 104 ~~e~~~~l~~~~~~~~~~~~~~~~~~ 129 (171)
.+|++.++......+++++++.++..
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44455555444444555555555443
No 238
>KOG0492|consensus
Probab=29.76 E-value=81 Score=22.59 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=36.6
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 61 (171)
+-||..++..+.+.|+. ..+++..|=..+-.+|.++..+++..|+
T Consensus 149 tPFTtqQLlaLErkfre-----kqYLSiaEraefSsSL~LTeTqVKIWFQ 193 (246)
T KOG0492|consen 149 TPFTTQQLLALERKFRE-----KQYLSIAERAEFSSSLELTETQVKIWFQ 193 (246)
T ss_pred CCCCHHHHHHHHHHHhH-----hhhhhHHHHHhhhhhhhhhhhheehhhh
Confidence 46889999999999985 4589998888887788888888777665
No 239
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=29.73 E-value=1.5e+02 Score=20.58 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=8.8
Q ss_pred ccccHHHHHHHHHhC
Q psy6877 136 LEISFNEWRDFLLYC 150 (171)
Q Consensus 136 g~I~~~ef~~~l~~~ 150 (171)
.+++.++|++.++..
T Consensus 148 ~kmt~~~Fi~~~~~~ 162 (185)
T cd00171 148 KKMTLEDFIKNLRGI 162 (185)
T ss_pred CCCCHHHHHHHHhcc
Confidence 356666666666543
No 240
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=29.70 E-value=1e+02 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy6877 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKD 48 (171)
Q Consensus 18 ~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~ 48 (171)
.+..+...-...|..+.+++|.++++.++-.
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 4455666666677777777888888776543
No 241
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=28.82 E-value=1.1e+02 Score=17.01 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=11.7
Q ss_pred ccHHHHHHHHHhCCcccHHHHHHh
Q psy6877 138 ISFNEWRDFLLYCPFSDIREQNVS 161 (171)
Q Consensus 138 I~~~ef~~~l~~~~~~~~~~~~~~ 161 (171)
|+.++|...|......-....+.+
T Consensus 30 it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 30 ITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp BCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHH
Confidence 556666666655544433333333
No 242
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=28.76 E-value=93 Score=17.61 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=27.7
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHHcC
Q psy6877 91 FSHLDKNQDGKIDLQELQKAFQELG-IDIDENEAKKLLKRMDK 132 (171)
Q Consensus 91 F~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~ 132 (171)
|..+-....|.+++.+...+..-+. ..++.+.+..++..+..
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~ 44 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALE 44 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5566666678888888777766664 35667777777777763
No 243
>KOG0842|consensus
Probab=28.66 E-value=46 Score=25.29 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHH
Q psy6877 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61 (171)
Q Consensus 13 ~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 61 (171)
-|+..++-+|.+.|+.- -+|+..|=..+...+.+++.+++..|.
T Consensus 159 LFSqAQV~ELERRFrqQ-----RYLSAPERE~LA~~LrLT~TQVKIWFQ 202 (307)
T KOG0842|consen 159 LFSQAQVYELERRFRQQ-----RYLSAPEREHLASSLRLTPTQVKIWFQ 202 (307)
T ss_pred ccchhHHHHHHHHHHhh-----hccccHhHHHHHHhcCCCchheeeeee
Confidence 48899999999999864 388888877778888899999887775
No 244
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=28.56 E-value=1e+02 Score=19.52 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 107 LQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
+.+++.-+...++.+|-..+....+.-.+|.|++...+.++..
T Consensus 55 l~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 55 LQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 5666666666778777777777776667888888777766644
No 245
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=28.47 E-value=1.2e+02 Score=17.11 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=25.0
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHHcCCCCccccH
Q psy6877 91 FSHLDKNQDGKIDLQELQKAFQEL-GIDIDENEAKKLLKRMDKDGSLEISF 140 (171)
Q Consensus 91 F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~ 140 (171)
|+.+.....+.++..+...+..-+ ....+.+.+..++..+-.. |..++
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~~--~~~~~ 50 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALKEAVSN--NKANY 50 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCH
Confidence 334444444467766655554333 1234566777777765432 44444
No 246
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=28.34 E-value=1.6e+02 Score=18.45 Aligned_cols=45 Identities=7% Similarity=0.141 Sum_probs=34.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHH
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 147 (171)
..-.||.+++..+++..|..+.......+.+.+. | .++.+++.-.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~----g-k~i~elIa~~ 58 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALE----G-KDIKDLLSNV 58 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc----C-CCHHHHhhcc
Confidence 4568999999999999999988877776666662 2 6667776544
No 247
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=28.11 E-value=1.4e+02 Score=17.91 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHcCCCCccccH
Q psy6877 119 DENEAKKLLKRMDKDGSLEISF 140 (171)
Q Consensus 119 ~~~~~~~~~~~~d~~~~g~I~~ 140 (171)
+++|+...|+.+..+++..+..
T Consensus 57 S~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 57 SQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred CHHHHHHHHHHHHhcCcccEEE
Confidence 5567777777777666665543
No 248
>KOG0483|consensus
Probab=28.02 E-value=1.8e+02 Score=20.63 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=37.5
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHh
Q psy6877 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLER 62 (171)
Q Consensus 12 ~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 62 (171)
..|+.+++..+...|.. .-++...+-..+.+.||+.+.++...|..
T Consensus 55 ~Rlt~eQ~~~LE~~F~~-----~~~L~p~~K~~LAk~LgL~pRQVavWFQN 100 (198)
T KOG0483|consen 55 RRLTSEQVKFLEKSFES-----EKKLEPERKKKLAKELGLQPRQVAVWFQN 100 (198)
T ss_pred ccccHHHHHHhHHhhcc-----ccccChHHHHHHHHhhCCChhHHHHHHhh
Confidence 46888888888888864 45888899999999999999988777753
No 249
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=27.82 E-value=72 Score=16.98 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=4.1
Q ss_pred CcccHHHHHH
Q psy6877 35 GKIDIHDLSK 44 (171)
Q Consensus 35 g~i~~~e~~~ 44 (171)
|.++..+++.
T Consensus 9 ~~itv~~~rd 18 (50)
T PF09107_consen 9 GEITVAEFRD 18 (50)
T ss_dssp SSBEHHHHHH
T ss_pred CcCcHHHHHH
Confidence 3444444443
No 250
>KOG0506|consensus
Probab=27.82 E-value=2.6e+02 Score=22.96 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=37.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHcCC--CHHHHHHHHHhh---c----C-CCCCcccHHHHHHHHH
Q psy6877 24 KLFVALDTDGNGKIDIHDLSKALKDFGV--HSLYAQKFLERS---D----S-NRSGDISLAEFIHYVK 81 (171)
Q Consensus 24 ~~F~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~---d----~-~~~~~i~~~eF~~~~~ 81 (171)
-+|..+....++.++...|..+|++.|+ +.+..+.+++.+ + . ...+.++-+.|..+..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 3566665555789999999999999994 333444444333 2 1 2345688888887754
No 251
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.73 E-value=1.3e+02 Score=17.39 Aligned_cols=33 Identities=9% Similarity=0.324 Sum_probs=28.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.+-.|+.+-++..+...|.+.|+..+.++++..
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 456799999999999999999998888888765
No 252
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=27.67 E-value=1.5e+02 Score=18.08 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHc-----CCCCccccHHHHHH
Q psy6877 107 LQKAFQELGIDIDENEAKKLLKRMD-----KDGSLEISFNEWRD 145 (171)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~d-----~~~~g~I~~~ef~~ 145 (171)
++.+++.-|..+..+++..++..++ --..|.|+.+.+.+
T Consensus 14 Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~k 57 (90)
T PF02337_consen 14 LKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKK 57 (90)
T ss_dssp HHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHH
T ss_pred HHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 4445555566666666666666554 23455566665543
No 253
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=27.63 E-value=2e+02 Score=19.45 Aligned_cols=31 Identities=3% Similarity=-0.023 Sum_probs=23.4
Q ss_pred CCCcccHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy6877 33 GNGKIDIHDLSKALKDFGVHSLYAQKFLERS 63 (171)
Q Consensus 33 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 63 (171)
..|+|+.+-+..+...+|+++.++..+...|
T Consensus 35 ~~G~Ip~e~~~~iA~~l~v~~~~V~~vatFY 65 (156)
T PRK05988 35 EFGYVPEDAVPVIAEALNLSRAEVHGVITFY 65 (156)
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4578888888888888888888776665554
No 254
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=27.54 E-value=2.8e+02 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHHc--CCCCccccHHHHHHHH
Q psy6877 115 GIDIDENEAKKLLKRMD--KDGSLEISFNEWRDFL 147 (171)
Q Consensus 115 ~~~~~~~~~~~~~~~~d--~~~~g~I~~~ef~~~l 147 (171)
|+-+++..++.+...+. ....|.|+..|+.+-+
T Consensus 110 GeLit~~Yld~iaeEIne~LqE~G~isI~eLa~~~ 144 (803)
T PLN03083 110 GEIISQSYWDSIAEEINERLQECSQIALAELARQL 144 (803)
T ss_pred CEecchHHHHHHHHHHHHHHHHcCcChHHHHHHhc
Confidence 33445555555554443 2345666666666555
No 255
>PRK01844 hypothetical protein; Provisional
Probab=27.46 E-value=1.3e+02 Score=17.45 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.+-.|+.+-++..+...|.+.|+..+..++...
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456799999999999999999999999988876
No 256
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=27.31 E-value=1.3e+02 Score=17.41 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=24.3
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC
Q psy6877 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50 (171)
Q Consensus 9 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~ 50 (171)
+-+..|+...-..++.+|...-+ .+..|..|...+...||
T Consensus 28 i~~~~f~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~ELG 67 (71)
T PF06569_consen 28 IKPEDFSEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEELG 67 (71)
T ss_pred CCHHhCChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHH
Confidence 33566666666677777766643 44566666666655544
No 257
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=26.97 E-value=43 Score=19.84 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=11.8
Q ss_pred CCCCcccHHHHHHHHH-HHHHHHHHHhhhh
Q psy6877 66 NRSGDISLAEFIHYVK-EHEKHLRLGFSHL 94 (171)
Q Consensus 66 ~~~~~i~~~eF~~~~~-~~~~~~~~~F~~~ 94 (171)
+..+.++..+-...+. .....+..+++.+
T Consensus 49 n~~~~lt~~~~~~~i~~~d~~~~~ri~~FL 78 (86)
T PF04433_consen 49 NPNKYLTKTDARKLIKGIDVNKIRRIYDFL 78 (86)
T ss_dssp HTTS---HHHHHHHTTSSSHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHccccCHHHHHHHHHHH
Confidence 3445555555555444 2334444444444
No 258
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=26.65 E-value=1.6e+02 Score=18.09 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 101 KIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 101 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.|+.++++++.+.....+++++.+.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 578888888887777788888877666655
No 259
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=26.42 E-value=1.9e+02 Score=23.32 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcC
Q psy6877 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50 (171)
Q Consensus 16 ~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~ 50 (171)
++....+..+| .+.....+.-+.+||...+....
T Consensus 285 ~~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 285 EKEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 34456677777 66666678899999999988544
No 260
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=25.81 E-value=1.9e+02 Score=20.04 Aligned_cols=15 Identities=0% Similarity=0.069 Sum_probs=8.8
Q ss_pred ccccHHHHHHHHHhC
Q psy6877 136 LEISFNEWRDFLLYC 150 (171)
Q Consensus 136 g~I~~~ef~~~l~~~ 150 (171)
.+++.++|++.+...
T Consensus 150 ~kmt~~~Fi~~~~~~ 164 (187)
T smart00222 150 KKMTLEDFIKNVRGS 164 (187)
T ss_pred CCCCHHHHHHHHhcc
Confidence 356666666666543
No 261
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=25.12 E-value=2.9e+02 Score=20.45 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=35.6
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhhc
Q psy6877 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSD 64 (171)
Q Consensus 11 ~~~l~~~~~~~~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~d 64 (171)
-..|+-.+.+.+++++..++. .+|.++..++.. .+|+++..+..-++.+.
T Consensus 174 i~tLSySEleAv~~IL~~L~~-~egrlse~eLAe---rlGVSRs~ireAlrkLE 223 (251)
T TIGR02787 174 INTLSYSELEAVEHIFEELDG-NEGLLVASKIAD---RVGITRSVIVNALRKLE 223 (251)
T ss_pred HHhccHhHHHHHHHHHHHhcc-ccccccHHHHHH---HHCCCHHHHHHHHHHHH
Confidence 456888888888888888863 257888887765 46777777765555553
No 262
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=24.86 E-value=1.9e+02 Score=18.26 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=16.8
Q ss_pred HHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 112 QELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
+..|..+++++++..+..+..... +|.++|...+..
T Consensus 61 k~~gI~vsd~evd~~i~~ia~~n~--ls~~ql~~~L~~ 96 (118)
T PF09312_consen 61 KRLGIKVSDEEVDEAIANIAKQNN--LSVEQLRQQLEQ 96 (118)
T ss_dssp HHCT----HHHHHHHHHHHHHHTT----HHHHHHHCHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 334666677777666666643222 566666666554
No 263
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.68 E-value=2.2e+02 Score=19.06 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=55.4
Q ss_pred HHHHhhcCCCCCcccHHHH---HHHHHH-cCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH------HHHHHHHHhhh
Q psy6877 24 KLFVALDTDGNGKIDIHDL---SKALKD-FGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKE------HEKHLRLGFSH 93 (171)
Q Consensus 24 ~~F~~~d~~~~g~i~~~e~---~~~l~~-~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~~~------~~~~~~~~F~~ 93 (171)
-.|..+. -||.++..|. +.+++. +|++......+......-+...+++..|...+.. ..+-+..++..
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5677765 3567777764 444433 4588888888877766656778999999887763 23334455555
Q ss_pred hcCCCCCcccHHHHHHHHHH
Q psy6877 94 LDKNQDGKIDLQELQKAFQE 113 (171)
Q Consensus 94 ~D~~~~g~I~~~e~~~~l~~ 113 (171)
. ..||.++.-|-.-+++.
T Consensus 112 a--~ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 A--YADGELDESEDHVIWRV 129 (148)
T ss_pred H--HccccccHHHHHHHHHH
Confidence 4 36778887775544443
No 264
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.59 E-value=1.2e+02 Score=15.73 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q psy6877 103 DLQELQKAFQELGIDIDENEA 123 (171)
Q Consensus 103 ~~~e~~~~l~~~~~~~~~~~~ 123 (171)
+.+++..+.+..|..++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 567777787778888877664
No 265
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.46 E-value=1.9e+02 Score=18.51 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 103 DLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 103 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
|.+|++.++..-+..++.++++.+..-.
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 5567777777777777777777776654
No 266
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=23.45 E-value=2.4e+02 Score=18.95 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=48.7
Q ss_pred CCCcccHHHHHH---HHHHcCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH--HHHHHHHHHHhhhhcCCCCCcccHHHH
Q psy6877 33 GNGKIDIHDLSK---ALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYV--KEHEKHLRLGFSHLDKNQDGKIDLQEL 107 (171)
Q Consensus 33 ~~g~i~~~e~~~---~l~~~~~~~~~~~~~~~~~d~~~~~~i~~~eF~~~~--~~~~~~~~~~F~~~D~~~~g~I~~~e~ 107 (171)
-||.++..|... ++..+++++.....++.. ..+-.++...|.... ......+..++.+ .-.||.++..|-
T Consensus 36 ADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---~~~~~L~~~~~~~~~~~~~~~~ll~~~l~v--A~ADG~l~~~E~ 110 (150)
T cd07311 36 GDGVISPEERDWAIGYAAARGGDADMVEELKEY---TADEDLEEVDFRSPNIKSSRRALLYDAIQV--CAADGELSPGEV 110 (150)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---CccccHHHHHHHHHhcchhHHHHHHHHHHH--HHcCCCCCHHHH
Confidence 478999998744 455567888887777776 233334333332222 1122223223322 235788888773
Q ss_pred HHHHHHh-CCCCCHHHHHHHHHH
Q psy6877 108 QKAFQEL-GIDIDENEAKKLLKR 129 (171)
Q Consensus 108 ~~~l~~~-~~~~~~~~~~~~~~~ 129 (171)
.-+.+.. ...++..++..+...
T Consensus 111 ~lL~~iA~~LGis~~~~~~l~~~ 133 (150)
T cd07311 111 AAVRKAASLLGISEDEVQKLEEI 133 (150)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 3222221 234566667666655
No 267
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=23.12 E-value=1.6e+02 Score=17.46 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHcCCCHHHHHHHHH
Q psy6877 36 KIDIHDLSKALKDFGVHSLYAQKFLE 61 (171)
Q Consensus 36 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 61 (171)
.++..+++.+.+.+|++...+..+-.
T Consensus 8 ~v~~~~wk~~~R~LGlse~~Id~ie~ 33 (80)
T cd08313 8 EVPPRRWKEFVRRLGLSDNEIERVEL 33 (80)
T ss_pred hCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46778899999999999988876633
No 268
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.63 E-value=1.3e+02 Score=21.20 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCH
Q psy6877 82 EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120 (171)
Q Consensus 82 ~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~ 120 (171)
...+.++.+|..||.++--..+.+++.+++..-|+.-..
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r 90 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNR 90 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhH
Confidence 346678999999999999999999999998887664333
No 269
>COG5562 Phage envelope protein [General function prediction only]
Probab=22.51 E-value=78 Score=20.90 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=26.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHh
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLY 149 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 149 (171)
.+|.|...-.+.+..- ....+...+.. ....+..|+.+|++|++-+..
T Consensus 53 ~~~~Il~~g~k~~~~V-~~~~n~~~i~~---al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 53 SDGVILIKGVKKVVGV-AEVFNTTLIKT---ALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred cCCEEEeeccccccce-ecccCHHHHHH---HHHHHhcCCccHHHHHHHHHh
Confidence 4555555444444322 12233333333 334557899999999998753
No 270
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=22.51 E-value=96 Score=19.25 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHH---HHHHHHHcCCCCccccHHHHHHHHHhCCcc
Q psy6877 99 DGKIDLQELQKAFQELGIDIDENEA---KKLLKRMDKDGSLEISFNEWRDFLLYCPFS 153 (171)
Q Consensus 99 ~g~I~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~ 153 (171)
.-.+|.+|+..++...|. ++.+ ...++....+....++-++.+..|...|..
T Consensus 33 ~~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~L 87 (105)
T cd03035 33 KDGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSL 87 (105)
T ss_pred cCCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCe
Confidence 345788888888877651 1111 233333333322347778888888776543
No 271
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=22.43 E-value=2.3e+02 Score=18.40 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=22.3
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHH
Q psy6877 86 HLRLGFSHLDKNQDGKIDLQELQKAFQEL-GIDIDENEAKKLLKRM 130 (171)
Q Consensus 86 ~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 130 (171)
.+..+|++|- .+.|+.+.+.+++... |..++...++-+...+
T Consensus 38 Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 38 KLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 3455555554 3456666666666554 3455555555444444
No 272
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=22.32 E-value=1.7e+02 Score=16.78 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy6877 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS 63 (171)
Q Consensus 22 ~~~~F~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 63 (171)
+..+|-.+=....+.|+...+..++..+|+++.-++.-+..+
T Consensus 6 i~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv~e~avR~alsRl 47 (70)
T PF07848_consen 6 IVTLLGDYLRPRGGWIWVASLIRLLAAFGVSESAVRTALSRL 47 (70)
T ss_dssp HHHHHHHHCCTTTS-EEHHHHHHHHCCTT--HHHHHHHHHHH
T ss_pred hHHHHHHHhccCCCceeHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 445565556677899999999999999999988775555444
No 273
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=21.99 E-value=1.1e+02 Score=14.51 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=11.0
Q ss_pred HHHHHcCCCHHHHHHHHHhh
Q psy6877 44 KALKDFGVHSLYAQKFLERS 63 (171)
Q Consensus 44 ~~l~~~~~~~~~~~~~~~~~ 63 (171)
..+..+|++...+...+...
T Consensus 6 ~~L~~mGf~~~~a~~aL~~~ 25 (37)
T smart00165 6 DQLLEMGFSREEALKALRAA 25 (37)
T ss_pred HHHHHcCCCHHHHHHHHHHh
Confidence 34455666666665554444
No 274
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=21.96 E-value=2e+02 Score=20.44 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHhhcCCCC
Q psy6877 36 KIDIHDLSKALKDFGVHSLYAQKFLERSDSNRS 68 (171)
Q Consensus 36 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~~ 68 (171)
.-..+|+..+++..|++++..+++.+.+..+++
T Consensus 79 e~e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 79 EEEKEELVEIYRAKGLSEEDAEEIAEELSKDKD 111 (213)
T ss_pred HhHHHHHHHHHHHCCCCHHHHHHHHHHHHhCch
Confidence 345568999999999999988888887766554
No 275
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.37 E-value=2e+02 Score=17.32 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=36.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCccccHHHHHHHHHhCCcccHHH
Q psy6877 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSDIRE 157 (171)
Q Consensus 98 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~ 157 (171)
+.|.+|.++...+-. .+...+....++..... .|.--|..|+..+.....+++-+
T Consensus 31 ~~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL~~~~~~~La~ 85 (90)
T cd08332 31 QKDILTDSMAESIMA---KPTSFSQNVALLNLLPK--RGPRAFSAFCEALRETSQEHLCD 85 (90)
T ss_pred HcCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHH--hChhHHHHHHHHHHhcChHHHHH
Confidence 468888877665543 23455667777777754 55688999999997644444433
No 276
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=21.15 E-value=2.4e+02 Score=22.22 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHcCCC
Q psy6877 25 LFVALDTDGNGKIDIHDLSKALKDFGVH 52 (171)
Q Consensus 25 ~F~~~d~~~~g~i~~~e~~~~l~~~~~~ 52 (171)
+|+.+|.+....++.++-..++..+|++
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp 189 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLP 189 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCC
Confidence 3455555567889999999999988843
No 277
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=20.73 E-value=1.7e+02 Score=16.22 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q psy6877 102 IDLQELQKAFQELGIDIDENEAKKL 126 (171)
Q Consensus 102 I~~~e~~~~l~~~~~~~~~~~~~~~ 126 (171)
.+.+++..+.+..|..++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4478888888888999999888764
No 278
>KOG4403|consensus
Probab=20.38 E-value=2.6e+02 Score=22.58 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCCcccHHHHHHHHHH---------HHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHHcCCCCc
Q psy6877 67 RSGDISLAEFIHYVKE---------HEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-GIDIDENEAKKLLKRMDKDGSL 136 (171)
Q Consensus 67 ~~~~i~~~eF~~~~~~---------~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g 136 (171)
++...+-.||+..... ..+.++.+-+.+|.|.+|.|+.+|--.+++.- ...-+..--.+-|+ . .|.
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH---~-dD~ 116 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH---G-DDK 116 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc---C-Ccc
Confidence 3445555666543221 34567788899999999999999988887653 22211111122222 2 344
Q ss_pred cccHHHHHHHHHhC
Q psy6877 137 EISFNEWRDFLLYC 150 (171)
Q Consensus 137 ~I~~~ef~~~l~~~ 150 (171)
.|+.+++...|...
T Consensus 117 ~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 117 HITVEDLWEAWKES 130 (575)
T ss_pred ceeHHHHHHHHHhh
Confidence 67777776666544
No 279
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=20.35 E-value=2.1e+02 Score=17.20 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhhcC
Q psy6877 39 IHDLSKALKDFGVHSLYAQKFLERSDS 65 (171)
Q Consensus 39 ~~e~~~~l~~~~~~~~~~~~~~~~~d~ 65 (171)
..++...|...|+++..+.++++.+..
T Consensus 8 ~~~~~~~L~~~gl~~~~a~kl~~~yg~ 34 (94)
T PF14490_consen 8 LRELMAFLQEYGLSPKLAMKLYKKYGD 34 (94)
T ss_dssp -HHHHHHHHHTT--HHHHHHHHHHH-T
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 456677788899999999999998864
No 280
>KOG0871|consensus
Probab=20.07 E-value=2.9e+02 Score=18.64 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy6877 74 AEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRM 130 (171)
Q Consensus 74 ~eF~~~~~~~~~~~~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 130 (171)
.+|+.+++.. +-...+.+...+|.++-+...|+.+|+.---+++..+...+
T Consensus 45 vEFI~liSsE------Aneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~ 95 (156)
T KOG0871|consen 45 VEFINLISSE------ANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENC 95 (156)
T ss_pred HHHHHHHHHH------HHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 4566555442 33455677889999999999999998774444555555444
Done!