RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6877
(171 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 69.3 bits (170), Expect = 2e-15
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDI 71
L +E + L++ F D D +G ID ++L K L+ G K E D+ +
Sbjct: 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGN-ETV 72
Query: 72 SLAEFIHYV------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKK 125
EF+ + + E+ LR F DK+ DG I + EL++ + LG + + E +K
Sbjct: 73 DFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEK 132
Query: 126 LLKRMDKDGSLEISFNEWRDFLLY 149
LLK D+DG EI + E++ +
Sbjct: 133 LLKEYDEDGDGEIDYEEFKKLIKD 156
Score = 39.2 bits (92), Expect = 2e-04
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 66 NRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKK 125
RS L F +E + L+ F D++ DG ID EL K + LG + E E K
Sbjct: 1 MRSKISDLLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINK 60
Query: 126 LLKRMDKDGSLEISFNEWRDFL 147
L + +D + F E+ +
Sbjct: 61 LFEEIDAGNE-TVDFPEFLTVM 81
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 58.3 bits (142), Expect = 3e-12
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 86 HLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRD 145
LR F DK+ DG I EL+ A + LG + E E ++++ +DKDG +I F E+ +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 146 FL 147
+
Sbjct: 61 LM 62
Score = 42.1 bits (100), Expect = 4e-06
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 21 RLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL--YAQKFLERSDSNRSGDISLAEFIH 78
L + F D DG+G I +L ALK G + + D + G I EF+
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 79 YVK 81
+
Sbjct: 61 LMA 63
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 64 DSNRSGDISLAEFIHYVKEH-----EKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
D + G IS E +K E+ + +DK+ DGKID +E +
Sbjct: 10 DKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
Score = 30.6 bits (70), Expect = 0.071
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK 47
A LK EE ++++ +D DG+GKID + + +
Sbjct: 24 AALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 58.9 bits (143), Expect = 2e-11
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQ--KFLERSDSNRSGDI 71
L ++ ++ + + F DTDG+G ID +L A++ G + + + D + SG I
Sbjct: 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKI 70
Query: 72 SLAEF--IHYVKEHEKHLRLG----FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKK 125
EF I K E+ R F D ++ GKI L+ L++ +ELG I + E ++
Sbjct: 71 DFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQE 130
Query: 126 LLKRMDKDGSLEISFNEWRDFLLYCPFS 153
++ D++G EIS E+ +
Sbjct: 131 MIDEADRNGDGEISEEEFYRIMKKTNLF 158
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 50.9 bits (122), Expect = 1e-08
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
+L +E ++ F D DG+G I +L ++ G + A Q + D++ +G
Sbjct: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
Query: 71 ISLAEFIHYVK------EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
I EF+ + + E+ ++ F D++ +G I EL+ LG + + E
Sbjct: 64 IDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVD 123
Query: 125 KLLKRMDKDGSLEISFNEW 143
++++ D DG +I++ E+
Sbjct: 124 EMIREADVDGDGQINYEEF 142
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 43.1 bits (102), Expect = 2e-06
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 94 LDKNQDGKIDLQELQKAFQELGIDIDENE----AKKLLKRMDKDGSLEISFNEWRDFL 147
LDK+ DG ID++EL+K + LG+ + + E + +DKDG ISF E+ + +
Sbjct: 3 LDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 38.1 bits (89), Expect = 1e-04
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 28 ALDTDGNGKIDIHDLSKALKDFGVHS------LYAQKFLERSDSNRSGDISLAEFIHYV 80
LD DG+G ID+ +L K LK G+ + D + G IS EF+ +
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 36.7 bits (86), Expect = 3e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148
+ G I +EL++A LGI + E E L + D DG +ISF E+ L
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLLQ 51
Score = 27.5 bits (62), Expect = 0.62
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 33 GNGKIDIHDLSKALKDFGVH-SLY-AQKFLERSDSNRSGDISLAEFI 77
G I +L +AL G+ S D++ G IS EF
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFC 47
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 32.6 bits (75), Expect = 0.008
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 87 LRLGFSHLDKNQDGKIDLQELQKAFQELG 115
LR F DK+ DG I +EL+KA + LG
Sbjct: 2 LREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 32.2 bits (74), Expect = 0.008
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 RLEKLFVALDTDGNGKIDIHDLSKALKDFG 50
L + F D DG+G I +L KAL+ G
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 30.9 bits (71), Expect = 0.022
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQEL 114
F DK+ DGKI +E ++ ++L
Sbjct: 6 FKEFDKDGDGKISFEEFKELLKKL 29
Score = 30.1 bits (69), Expect = 0.056
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 21 RLEKLFVALDTDGNGKIDIHDLSKALKDF 49
L++ F D DG+GKI + + LK
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 27.0 bits (61), Expect = 0.65
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 122 EAKKLLKRMDKDGSLEISFNEWRDFL 147
E K+ K DKDG +ISF E+++ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELL 26
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 30.8 bits (71), Expect = 0.025
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQEL 114
F DK+ DGKID +E + + L
Sbjct: 6 FRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 27.3 bits (62), Expect = 0.50
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 122 EAKKLLKRMDKDGSLEISFNEWRDFL 147
E K+ + DKDG +I F E++D L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26
Score = 25.8 bits (58), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALK 47
L++ F D DG+GKID + LK
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.6 bits (68), Expect = 0.068
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 91 FSHLDKNQDGKIDLQELQK 109
F D N DGKI +EL++
Sbjct: 5 FRQFDTNGDGKISKEELKR 23
Score = 26.9 bits (61), Expect = 0.59
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKAL 46
L+ LF DT+G+GKI +L + L
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|238155 cd00252, SPARC_EC, SPARC_EC; extracellular Ca2+ binding domain
(containing 2 EF-hand motifs) of SPARC and related
proteins (QR1, SC1/hevin, testican and tsc-36/FRP).
SPARC (BM-40) is a multifunctional glycoprotein, a
matricellular protein, that functions to regulate
cell-matrix interactions; binds to such proteins as
collagen and vitronectin and binds to endothelial cells
thus inhibiting cellular proliferation. The EC domain
interacts with a follistatin-like (FS) domain which
appears to stabilize Ca2+ binding. The two EF-hands
interact canonically but their conserved disulfide bonds
confer a tight association between the EF-hand pair and
an acid/amphiphilic N-terminal helix. Proposed active
form involves a Ca2+ dependent symmetric
homodimerization of EC-FS modules.
Length = 116
Score = 31.2 bits (71), Expect = 0.095
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEA--KKLLKR--MDKDGSLEISFNEW 143
F+ LD N DGK+ EL I +D NE K + +DKDGS IS +EW
Sbjct: 54 FNQLDGNYDGKLSHHELAP------IRLDPNEHCIKPFFESCDLDKDGS--ISLDEW 102
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 29.2 bits (66), Expect = 0.40
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEA--KKLLKR--MDKDGSLEISFNEWR 144
F+ LD N DG + EL L + E K K DKDG IS EW
Sbjct: 59 FNQLDTNHDGYLSRSEL----APLRAPLVPMEHCIKPFFKSCDADKDGL--ISLREWC 110
>gnl|CDD|240155 cd05029, S-100A6, S-100A6: S-100A6 domain found in proteins similar
to S100A6. S100A6 is a member of the S100 domain family
within EF-hand Ca2+-binding proteins superfamily. Note
that the S-100 hierarchy, to which this S-100A6 group
belongs, contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
exhibit unique patterns of tissue- and cell
type-specific expression and have been implicated in the
Ca2+-dependent regulation of diverse physiological
processes, including cell cycle regulation,
differentiation, growth, and metabolic control . S100A6
is normally expressed in the G1 phase of the cell cycle
in neuronal cells. The function of S100A6 remains
unclear, but evidence suggests that it is involved in
cell cycle regulation and exocytosis. S100A6 may also be
involved in tumorigenesis; the protein is overexpressed
in several tumors. Ca2+ binding to S100A6 leads to a
conformational change in the protein, which exposes a
hydrophobic surface for interaction with target
proteins. Several such proteins have been identified:
glyceraldehyde-3-phosphate dehydrogenase , annexins 2,
6 and 11 and Calcyclin-Binding Protein (CacyBP).
Length = 88
Score = 28.7 bits (64), Expect = 0.55
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 95 DKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
DKN K +L+EL + +G + + E KL++ +D++ E++F E+ FL
Sbjct: 25 DKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77
>gnl|CDD|236406 PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.
Length = 350
Score = 29.8 bits (68), Expect = 0.59
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 19/89 (21%)
Query: 69 GDISLAEFIHYVKEHEK-HLRLGFSHLDKNQ----DGKIDLQELQKA------FQELGID 117
G I+ A+ +H V EH + L H K DG +D E A F ID
Sbjct: 76 GAIAGAKHVHEVAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMID 135
Query: 118 -----IDEN--EAKKLLKRMDKDG-SLEI 138
++EN K L+RM K G +LEI
Sbjct: 136 LSEEPLEENIEICSKYLERMAKAGMTLEI 164
>gnl|CDD|220253 pfam09469, Cobl, Cordon-bleu domain. The Cordon-bleu protein
domain is highly conserved among vertebrates. The
sequence contains three repeated lysine, arginine, and
proline-rich regions, the KKRAP motif. The exact
function of the protein is unknown but it is thought to
be involved in mid-brain neural tube closure. It is
expressed specifically in the node.
Length = 349
Score = 30.0 bits (67), Expect = 0.61
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 41 DLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDK 96
DL+K+L D G+ LYA S S + E EK LGF K
Sbjct: 189 DLTKSLNDLGIKELYAWDVNRESCRISSNLSDM-------TEKEKKGFLGFFQRSK 237
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs
that recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 28.4 bits (64), Expect = 0.71
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLER----SDSNRS 68
+ ED+ + E++F +LD + +G + K + S Q L + +D +
Sbjct: 3 AISPEDKAKYEQIFRSLDKNQDGTVT----GAQAKPILLKSGLPQTLLAKIWNLADIDND 58
Query: 69 GDISLAEFI 77
G++ EF
Sbjct: 59 GELDKDEFA 67
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 29.4 bits (66), Expect = 0.97
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 33 GNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRS-GDISLAEFIHYVKEHEKHL-RLG 90
G ++D+ D + S L+ S SN+ G I ++ I E E+ R
Sbjct: 128 GYCELDLFDFVTQEPESACESFD---LLDPSSSNKVVGSIFVSCSIEDPVETERSFARRI 184
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ +D ++DG++ E + G + N+ ++L K D +G ++ +E L
Sbjct: 185 LAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALL 241
Score = 27.5 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKAL 46
+ E+LF A D +G+G + I +L+ L
Sbjct: 215 NKKEELFKAADLNGDGVVTIDELAALL 241
>gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil
reductase; Validated.
Length = 217
Score = 29.1 bits (66), Expect = 1.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL 54
P E E LEK + G ++D+ DL + L + G+ L
Sbjct: 105 PSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYERGIKRL 144
>gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal
domain. Eubacterial riboflavin-specific deaminases have
a zinc-binding domain recognized by the dCMP_cyt_deam
model toward the N-terminus and this domain toward the
C-terminus. Yeast HTP reductase, a
riboflavin-biosynthetic enzyme, and several archaeal
proteins believed related to riboflavin biosynthesis
consist only of this domain and lack the dCMP_cyt_deam
domain.
Length = 216
Score = 28.9 bits (65), Expect = 1.1
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY 55
+E + LE V + ++D+ L + L + G++S+
Sbjct: 106 DEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEEGINSVM 146
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated
in endocytosis, vesicle transport, and signal
transduction. The alignment contains a pair of EF-hand
motifs, typically one of them is canonical and binds to
Ca2+, while the other may not bind to Ca2+. A
hydrophobic binding pocket is formed by residues from
both EF-hand motifs. The EH domain binds to proteins
containing NPF (class I), [WF]W or SWG (class II), or
H[TS]F (class III) sequence motifs.
Length = 67
Score = 27.2 bits (61), Expect = 1.1
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 23 EKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVK 81
+++F +LD DG+G I + L G+ + + +D+++ G + EF +
Sbjct: 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 29.2 bits (66), Expect = 1.2
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSDIRE 157
+ K +LQK +L + + KD S E F ++ +FL FS E
Sbjct: 280 KAAKEKYDKLQKDLSDLKTRF--EKLVEYYGEDPKDTSPEEFFKDFNEFLK--EFSKAAE 335
Query: 158 QNVSAQKT 165
+N+ ++
Sbjct: 336 ENIKKEEE 343
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 552
Score = 28.6 bits (65), Expect = 1.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 114 LGIDIDENEAKKLLKRM 130
LGID+ E +LL+RM
Sbjct: 288 LGIDLSAEEIIELLERM 304
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 113 ELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
E+ D++ EA++L MD+ G++ I +E
Sbjct: 239 EMAFDLEA-EAERLKAVMDEVGNVNIFLSE 267
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain. This domain is found in
phenylalanine-tRNA synthetase beta subunits.
Length = 70
Score = 26.4 bits (59), Expect = 2.7
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 101 KIDLQELQKAFQELGIDIDENEAKKLLKRM 130
+DL+++ + LGI++ E KK+LKR+
Sbjct: 5 TLDLEKINRL---LGIELSPEEIKKILKRL 31
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this
family are mammalian aldehyde oxidase (EC 1.2.3.1)
isozymes, closely related to xanthine
dehydrogenase/oxidase.
Length = 1330
Score = 28.1 bits (62), Expect = 2.8
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 127 LKRMDKDGSLEISFNEWRDFLLYCPFSDIREQ------NVSAQKTWKLI 169
L + K+G +I +E FL CP +D++ Q N+ + W+ +
Sbjct: 375 LNLLSKEGKRQIPLSE--QFLSKCPDADLKPQEILVSVNIPYSRKWEFV 421
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 27.9 bits (62), Expect = 3.2
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 77 IHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEA 123
+ + E G S + Q ID LQ+A + LGI E A
Sbjct: 209 LEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLGISEGEQRA 255
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain. This domain is found in
phenylalanine-tRNA synthetase beta subunits.
Length = 68
Score = 25.9 bits (58), Expect = 3.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 114 LGIDIDENEAKKLLKRM 130
LG++I E +++LKR+
Sbjct: 14 LGLEILAEEIEEILKRL 30
>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 238
Score = 27.6 bits (62), Expect = 3.4
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVK 81
+E+++VA D + A++ FG K + SD + SG LAE + ++
Sbjct: 43 VEEVYVATDDQ--------RIEDAVEAFGG------KVVMTSDDHLSGTDRLAEVMLKIE 88
Query: 82 E 82
Sbjct: 89 A 89
>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the non-NMDA (N-methyl-d-asparate) subtypes of
ionotropic glutamate receptors. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the non-NMDA (N-methyl-d-asparate) subtypes of
ionotropic glutamate receptors. While this N-terminal
domain belongs to the periplasmic-binding fold type I
superfamily, the glutamate-binding domain of the iGluR
is structurally homologous to the periplasmic-binding
fold type II. The LIVBP-like domain of iGluRs is thought
to play a role in the initial assembly of iGluR
subunits, but it is not well understood how this domain
is arranged and functions in intact iGluR. Glutamate
mediates the majority of excitatory synaptic
transmission in the central nervous system via two broad
classes of ionotropic receptors, characterized by their
response to glutamate agonists: N-methyl-d -aspartate
(NMDA) and non-NMDA receptors. NMDA receptors have
intrinsically slow kinetics, are highly permeable to
Ca2+, and are blocked by extracellular Mg2+ in a
voltage-dependent manner. Non-NMDA receptors have faster
kinetics, are most often only weakly permeable to Ca2+,
and are not blocked by extracellular Mg2+. While
non-NMDA receptors typically mediate excitatory synaptic
responses at resting membrane potentials, NMDA receptors
contribute several forms of synaptic plasticity and are
thought to play an important role in the development of
synaptic pathways. Non-NMDA receptors include
alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionate
(AMPA) and kainate receptors.
Length = 324
Score = 27.6 bits (62), Expect = 3.6
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 97 NQDGKIDLQELQKAFQELGIDI-------DENEAKKLLKRMDKDG 134
+ +G + LQEL A GI + D + + LLK + ++
Sbjct: 136 SDEGLLRLQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIKREK 180
>gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein,
alpha-component. This model describes an
NADPH-dependent sulfite reductase flavoprotein subunit.
Most members of this family are found in Cys
biosynthesis gene clusters. The closest homologs below
the trusted cutoff are designated as subunits nitrate
reductase.
Length = 597
Score = 27.7 bits (62), Expect = 3.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148
Q GK + K +ELG K+LL R+D D + + EWR +L
Sbjct: 160 QTGK----DFDKRLEELG-------GKRLLPRVDADLDYDANAAEWRAGVL 199
>gnl|CDD|236430 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 27.4 bits (62), Expect = 4.0
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 99 DGKIDLQELQKAFQELGIDIDE--NEAKKLLKRMDKDGSLEIS 139
+ ++D ++ AF GID E E + L ++ DG +E+
Sbjct: 378 NFELDFAAIEAAF---GIDFAEYFAEELERLAPLEADGLVELD 417
>gnl|CDD|143582 cd07178, terB_like_YebE, tellurium resistance terB-like protein,
subgroup 3. This family includes several
uncharacterized bacterial proteins including an
Escherichia coli protein called YebE. Protein sequence
homology analysis shows they are similar to tellurium
resistance protein terB, but the function of this family
is unknown.
Length = 95
Score = 26.4 bits (59), Expect = 4.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 99 DGKIDLQELQKAFQELGIDIDENEAKKLLKR 129
DG ID E + ELG + E + L+
Sbjct: 13 DGHIDEAERARILGELGEAGLDAEERAFLEA 43
>gnl|CDD|238939 cd01981, Pchlide_reductase_B, Pchlide_reductase_B: B protein of the
NB protein complex of Protochlorophyllide
(Pchlide)_reductase. Pchlide reductase catalyzes the
reductive formation of chlorophyllide (chlide) from
protochlorophyllide (pchlide) during biosynthesis of
chlorophylls and bacteriochlorophylls. This group
contains both the light-independent Pchlide reductase
(DPOR) and light-dependent Pchlide reductase (LPOR).
Angiosperms contain only LPOR, cyanobacteria, algae and
gymnosperms contain both DPOR and LPOR, primitive
anoxygenic photosynthetic bacteria contain only DPOR. NB
is structurally similar to the FeMo protein of
nitrogenase, forming an N2B2 heterotetramer. N and B are
homologous to the FeMo alpha and beta subunits
respectively. Also in common with nitrogenase in vitro
DPOR activity requires ATP hydrolysis and dithoionite or
ferredoxin as electron donor. The NB protein complex may
serve as a catalytic site for Pchlide reduction similar
to MoFe for nitrogen reduction.
Length = 430
Score = 27.4 bits (61), Expect = 4.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 89 LGFSHLDKNQDGKIDLQELQKAFQELGIDI 118
LGF + D +EL++ LGI++
Sbjct: 173 LGFHNRH-------DCRELKRLLHTLGIEV 195
>gnl|CDD|218510 pfam05226, CHASE2, CHASE2 domain. CHASE2 is an extracellular
sensory domain, which is present in various classes of
transmembrane receptors that are parts of signal
transduction pathways in bacteria. Specifically, CHASE2
domains are found in histidine kinases, adenylate
cyclases, serine/threonine kinases and predicted
diguanylate cyclases/phosphodiesterases. Environmental
factors that are recognised by CHASE2 domains are not
known at this time.
Length = 305
Score = 27.3 bits (61), Expect = 4.6
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 37/172 (21%)
Query: 22 LEKLF------VALD------TDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSG 69
L++L + D D L+ AL G + + FLE S+
Sbjct: 73 LDRLAAAGAKAIGFDILFDEPDRDGPAGDAA-LAAALARAG-NPVVLGVFLEASEDGGGP 130
Query: 70 DISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKI-----------------DLQELQKAFQ 112
LGF ++ + DG + L + A
Sbjct: 131 VAPPPAL-----AAAAA-GLGFVNVVPDSDGVVRRVPLLVGYGGRLYPSLALALARVALG 184
Query: 113 ELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFSDIREQNVSAQK 164
I + + L+ G L ++F +D+ E V +
Sbjct: 185 APPIRAEADAGGGDLRIPTDGGQLLLNFRGPAGTFPTVSAADVLEGRVPPEL 236
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 27.1 bits (60), Expect = 4.8
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRS 68
L+ +P LEK V +DGNG D + L GV S F E ++ +
Sbjct: 271 ALEAGVP------LEK--VTFSSDGNGSQPFFDENGELTGLGVGSF-ETLFEEVREAVKD 321
Query: 69 GDISLAEFIHYVKE 82
GD+ L + + +
Sbjct: 322 GDVPLEKALRVITS 335
>gnl|CDD|179293 PRK01395, PRK01395, V-type ATP synthase subunit F; Provisional.
Length = 104
Score = 26.1 bits (58), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 110 AFQELGID----IDENEAKKLLKRMDKD 133
F+ LGID IDE EA L+++ +
Sbjct: 17 PFKALGIDVFPVIDEQEAINTLRKLAME 44
>gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the
GT1 family of glycosyltransferases.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP-linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed
for nucleotide-sugar-dependent glycosyltransferases.
GTB proteins have distinct N- and C- terminal domains
each containing a typical Rossmann fold. The two
domains have high structural homology despite minimal
sequence homology. The large cleft that separates the
two domains includes the catalytic center and permits a
high degree of flexibility. The members of this family
are found mainly in bacteria and eukaryotes.
Length = 357
Score = 27.2 bits (61), Expect = 4.9
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 39 IHDLSKALKDFGVHS--LYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFS 92
I DL++ L G+ L A + D R+G + FS
Sbjct: 20 IRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHR-----VIRAPSLLNVASTPFS 70
>gnl|CDD|143647 cd07887, RHD-n_Dorsal_Dif, N-terminal sub-domain of the Rel
homology domain (RHD) of the arthropod protein Dorsal.
Proteins containing the Rel homology domain (RHD) are
metazoan transcription factors. The RHD is composed of
two structural sub-domains; this model characterizes the
N-terminal RHD sub-domain of the arthropod Dorsal and
Dif (Dorsal-related immunity factor), and similar
proteins. Dorsal and Dif are Rel-like transcription
factors, which play roles in mediating innate immunity
in Drosophila. They are activated via the Toll pathway.
Cytoplasmic Dorsal/Dif are inactivated via forming a
complex with Cactus, the Drosophila homologue of
mammalian I-kappa B proteins. In response to signals,
Cactus is degraded and Dorsal/Dif can be transported
into the nucleus, where they act as transcription
factors. Dorsal is also an essential gene in
establishing the proper dorsal/ventral polarity in the
developing embryo.
Length = 173
Score = 26.7 bits (59), Expect = 5.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 88 RLGFSHLDKNQDGKIDLQELQKAFQ 112
R GF H K+Q IDL ++ FQ
Sbjct: 125 RTGFDH--KDQINSIDLNVVRLCFQ 147
>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated.
Length = 445
Score = 27.0 bits (60), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61
EDE LE L++A + S+AL FG ++Y +KF+
Sbjct: 174 EDESDLENLYLAAE------------SEALSAFGDGTMYMEKFIN 206
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37.
Length = 93
Score = 25.8 bits (57), Expect = 5.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 103 DLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEIS 139
DL L K ++ EA+ L+R + G +
Sbjct: 29 DLDMLNKVLAKM----PVEEAEYHLERCIESGLWGVP 61
>gnl|CDD|219443 pfam07515, DUF1528, Protein of unknown function (DUF1528).
Length = 106
Score = 26.1 bits (58), Expect = 5.5
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 79 YVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI 116
Y +EH ++ + + D Q +QK F++LG+
Sbjct: 28 YAQEH--------PNVPAAGNDEEDWQWVQKRFEKLGL 57
>gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed.
Length = 378
Score = 27.1 bits (61), Expect = 5.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 107 LQKAFQELGIDIDENEAKKLLKR 129
L+ +E GI++ E +LL++
Sbjct: 325 LKNKLKEYGIELSREELCELLEK 347
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 91 FSHLDKNQDGKIDLQE 106
LD N+DGK+D QE
Sbjct: 57 MKDLDVNKDGKVDFQE 72
Score = 25.1 bits (56), Expect = 9.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 16 QEDEERLEKLFVALDTDGNGKID 38
Q+D E ++K+ LD + +GK+D
Sbjct: 47 QKDPEAVDKIMKDLDVNKDGKVD 69
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 27.0 bits (60), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 27 VALDTDGNGKIDIHDLSKA 45
V + TD G I+I +L KA
Sbjct: 641 VVVGTDAKGNINIEELRKA 659
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in MgcRacGAP proteins.
MgcRacGAP plays an important dual role in cytokinesis:
i) it is part of centralspindlin-complex, together with
the mitotic kinesin MKLP1, which is critical for the
structure of the central spindle by promoting
microtuble bundling. ii) after phosphorylation by
aurora B MgcRacGAP becomes an effective regulator of
RhoA and plays an important role in the assembly of the
contractile ring and the initiation of cytokinesis.
MgcRacGAP-like proteins contain a N-terminal C1-like
domain, and a C-terminal RhoGAP domain. Small GTPases
cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 193
Score = 26.5 bits (59), Expect = 5.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 35 GKIDIHDLSKALKDF 49
K+DIH + LKDF
Sbjct: 65 SKVDIHVICGCLKDF 79
>gnl|CDD|234903 PRK01115, PRK01115, DNA polymerase sliding clamp; Validated.
Length = 247
Score = 26.7 bits (60), Expect = 6.1
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 113 ELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
++G+D+++ KK+LKR K LE+ +E + L
Sbjct: 67 KIGVDLED--LKKILKRAKKGDKLELELDEEENKL 99
>gnl|CDD|235085 PRK02910, PRK02910, light-independent protochlorophyllide reductase
subunit B; Provisional.
Length = 519
Score = 26.8 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 89 LGFSHLDKNQDGKIDLQELQKAFQELGIDI 118
LGF H D DL EL++ LGID+
Sbjct: 169 LGFHHRD-------DLTELRRLLATLGIDV 191
>gnl|CDD|218939 pfam06207, DUF1002, Protein of unknown function (DUF1002). This
protein family has no known function. Its members are
about 300 amino acids in length. It has so far been
detected in Firmicute bacteria and some archaebacteria.
Length = 222
Score = 26.8 bits (60), Expect = 6.5
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 95 DKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
K + KI + L I++ +N+ ++++ M K L I +N+++D L
Sbjct: 170 TKEEIRKI----VNNVLNNLNINLTDNQIQQIVNLMVKINDLNIDWNQFKDQL 218
>gnl|CDD|178374 PLN02775, PLN02775, Probable dihydrodipicolinate reductase.
Length = 286
Score = 26.5 bits (59), Expect = 6.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 92 SHLDKNQDGKIDLQELQKA----FQELGIDIDENEAKKL 126
SH Q K+D KA F++LG+ D ++ + +
Sbjct: 168 SH----QATKLDTSGTAKAVISSFRKLGVSFDMDQIELI 202
>gnl|CDD|218059 pfam04391, DUF533, Protein of unknown function (DUF533). Some
family members may be secreted or integral membrane
proteins.
Length = 187
Score = 26.4 bits (59), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 99 DGKIDLQELQKAFQELGIDIDENEAKKLLKR 129
DG ID +E + QELG + E + L++
Sbjct: 92 DGHIDEEERARIEQELGELGLDAEERAWLEQ 122
>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 771
Score = 26.7 bits (59), Expect = 7.6
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 119 DENEAKKLLKRMDKDGSLEISFNEWRDFL 147
E+ K+ + + ++G ++ F E+ DFL
Sbjct: 181 QEDMLKRAFRYLKEEGIMKGDFEEFLDFL 209
>gnl|CDD|202795 pfam03880, DbpA, DbpA RNA binding domain. This RNA binding domain
is found at the C-terminus of a number of DEAD helicase
proteins. It is sufficient to confer specificity for
hairpin 92 of 23S rRNA, which is part of the ribosomal
A-site. However, several members of this family lack
specificity for 23S rRNA. These can proteins can
generally be distinguished by a basic region that
extends beyond this domain [Karl Kossen, unpublished
data].
Length = 74
Score = 25.1 bits (56), Expect = 8.2
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 93 HLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDK 132
+ + GKID+ + +F +++ E+ A K+LK + K
Sbjct: 27 GITGDDIGKIDIFD-NFSF----VEVPEDMADKVLKALKK 61
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37 pfam03234.
Length = 89
Score = 25.4 bits (56), Expect = 8.2
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 103 DLQELQKAFQELGIDIDENEAKKLLKRMDKDG 134
DL E+ K ++ EA+ ++R G
Sbjct: 26 DLDEVNKVLAKM----PVEEAEYHMERCIDSG 53
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 26.5 bits (59), Expect = 8.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 104 LQELQKAFQELGIDIDENEAKKLLKRMDK 132
LQEL++ Q+LG+ D ++ R D+
Sbjct: 1036 LQELKQELQDLGVPADSGAEERARARRDE 1064
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,911,383
Number of extensions: 842682
Number of successful extensions: 1731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1694
Number of HSP's successfully gapped: 150
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)