RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6877
(171 letters)
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 114 bits (288), Expect = 1e-32
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH-SL-YAQKFLERSDSNRSGDI 71
+P + R+ + F+ +D D +G ++I++L G+ S A + + D++ +G I
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHI 104
Query: 72 SLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131
S EF+ K E F + + G ++ E+ A Q+LG I++ LL R+
Sbjct: 105 SFYEFMAMYKFMEL-AYNLFVMNARARSGTLEPHEILPALQQLGFYINQ-RTSLLLHRLF 162
Query: 132 KDGSLEISFNEW 143
G N W
Sbjct: 163 ARGMAFCDLNCW 174
Score = 50.9 bits (122), Expect = 2e-08
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 31/134 (23%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH-SLYAQKFLERSDSNRSGDISLAE 75
+ E LFV +G ++ H++ AL+ G + + L R + L
Sbjct: 114 KFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFARGMAFCDLNC 173
Query: 76 FIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGS 135
+I + + A+Q + ++
Sbjct: 174 WIAIC---------------------AFAAQTRSAYQMIFMNPYYG---------PMKPF 203
Query: 136 LEISFNEWRDFLLY 149
+ F ++ D +
Sbjct: 204 NPMEFGKFLDVVTS 217
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 90.8 bits (226), Expect = 1e-23
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS---- 63
D + L + F A+DTDG+G I + +L+ AL G F +
Sbjct: 15 VYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAG------VPFSLATTEKL 68
Query: 64 ----DSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDID 119
D N SG+I+ EF + +R GF D + DG++D E++ A G +
Sbjct: 69 LHMYDKNHSGEITFDEFKD-LHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVS 127
Query: 120 ENEAKKLLKRMDKDGSLEISFNE 142
E + L+++ D+ + F++
Sbjct: 128 EQTFQALMRKFDRQRRGSLGFDD 150
Score = 51.9 bits (125), Expect = 5e-09
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH--SLYAQKFLERSDSNRSGDISLAEF 76
+ + F D+ G+G++D +++ AL G Q + + D R G + ++
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDY 151
Query: 77 IHYVKEHEKHLRLGFSHLDKNQDGKIDLQ 105
+ +R F+ D+ + G++
Sbjct: 152 VELSI-FVCRVRNVFAFYDRERTGQVTFT 179
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 90.4 bits (225), Expect = 1e-23
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 14/150 (9%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGD 70
+L + + + +LF LDT+ NG + ++ L G+ + L+ D N G+
Sbjct: 30 ELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGN 89
Query: 71 ISLAEFI----HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126
I+ EF+ + L+ F+ +DK++DG I ++ + +D N+
Sbjct: 90 ITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV--LDNNDIDNF 147
Query: 127 LKRMDKDG--------SLEISFNEWRDFLL 148
+ +ISF E++D++L
Sbjct: 148 FLSVHSIKKGIPREHIINKISFQEFKDYML 177
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 92.2 bits (229), Expect = 5e-23
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDI 71
L +ED L +LF++ G+GK DL + L + +K +++ G +
Sbjct: 116 LSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRM 175
Query: 72 SLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131
S + V L F +D N +G + +E ++ F LG D ++ L + D
Sbjct: 176 SYITLVA-VANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYAD 233
Query: 132 KDGSLEISFNEW 143
+D S ++ F+E+
Sbjct: 234 EDESDDVGFSEY 245
Score = 87.9 bits (218), Expect = 2e-21
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHS-LYAQKFLERSDSNRSGDISLAE 75
D L F +DT+ NG + + + G +D + S D+ +E
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSE 244
Query: 76 FIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI-DIDENEAKKLLKRMDKDG 134
++H LR+ ++ D ++ G++ +E+QK ++ I + + + +D D
Sbjct: 245 YVHLGL-CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDD 303
Query: 135 SLEISFNEWRDFLL 148
S +S+ E+ +L
Sbjct: 304 SKSLSYQEFVMLVL 317
Score = 69.8 bits (171), Expect = 6e-15
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 7/139 (5%)
Query: 10 LKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS-----D 64
L+ ++ Q+++E+ K D + D + ++ ++ A+K S +
Sbjct: 42 LEAQIAQKEQEQKAK-LAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLE 100
Query: 65 SNRSGDISLAEFIHYVKEHEKH-LRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEA 123
+ SG L + E + + LR F + GK Q+L++ + I E
Sbjct: 101 DDASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPL 160
Query: 124 KKLLKRMDKDGSLEISFNE 142
KKL ++ D +S+
Sbjct: 161 KKLFVMVENDTKGRMSYIT 179
Score = 31.3 bits (71), Expect = 0.13
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 80 VKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG---IDIDENEAKKLLKRMDKDGSL 136
+ + E+ + + D+ + D +E + +E ++ LLK ++ D S
Sbjct: 46 IAQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASG 105
Query: 137 EISFNEWRDFLLYCPFSDIRE 157
+ L + +R+
Sbjct: 106 YNRLRPSKPMLSEEDTNILRQ 126
Score = 26.7 bits (59), Expect = 3.8
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKID 38
+ + +P+ ++ E F +D D + +
Sbjct: 277 KVLEDAHIPESARKKFEHQFSVVDVDDSKSLS 308
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 86.8 bits (216), Expect = 3e-22
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 11/151 (7%)
Query: 1 MLTLKCEAMLKL--KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA-- 56
M K A+ + L +E+ L+++F +D D +G+I +L LK G + +
Sbjct: 6 MNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEI 65
Query: 57 QKFLERSDSNRSGDISLAEFI-----HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAF 111
++ +D + SG I EFI E E HL F++ DK+ G I ELQ+A
Sbjct: 66 LDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQAC 125
Query: 112 QELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
+E G +++ ++L++ +D+D I +NE
Sbjct: 126 EEFG--VEDVRIEELMRDVDQDNDGRIDYNE 154
Score = 47.5 bits (114), Expect = 2e-07
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDS 65
A L L E E+ L F D DG+G I +L +A ++FGV + ++ + D
Sbjct: 86 IAATLHLNK-IEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQ 144
Query: 66 NRSGDISLAEFI 77
+ G I EF+
Sbjct: 145 DNDGRIDYNEFV 156
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 86.9 bits (216), Expect = 4e-22
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-AQKFLERSDSNRSGDI 71
+ D E+L+ F+ LD DG G I L K L+ G+ Y L++ DS+ SG I
Sbjct: 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKI 104
Query: 72 SLAEFI----HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG-----IDIDENE 122
EFI + +K + F D + DG+I EL D N
Sbjct: 105 DYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNR 164
Query: 123 AKKLLKRMDKDGSLEISFNE 142
K++++ +DK+ +I F+E
Sbjct: 165 VKRMIRDVDKNNDGKIDFHE 184
Score = 42.2 bits (100), Expect = 2e-05
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA-------QK 58
A L K Q ++ + F D D +G+I +L+ L + ++
Sbjct: 110 IAAALDRK--QLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKR 167
Query: 59 FLERSDSNRSGDISLAEFIHYVK 81
+ D N G I EF +K
Sbjct: 168 MIRDVDKNNDGKIDFHEFSEMMK 190
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 86.1 bits (214), Expect = 5e-22
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS--------DSN 66
D+ L +F +D D +G I +L +AL + F + D
Sbjct: 2 ALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGT-----WTPFNPVTVRSIISMFDRE 56
Query: 67 RSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126
++ +EF K + + F D++ G ID EL++A G + + L
Sbjct: 57 NKAGVNFSEFTGVWK-YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDIL 115
Query: 127 LKRMDKDGSLEISFNE 142
+++ D+ G +I+F++
Sbjct: 116 IRKFDRQGRGQIAFDD 131
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 89.0 bits (221), Expect = 2e-21
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 4 LKCEAMLKL--KLPQEDE-ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY----- 55
L A+L + KL DE ++L ++F LDT+ +G +D +L + +F
Sbjct: 312 LAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSL 371
Query: 56 -----------AQKFLERSDSNRSGDISLAEFI-----HYVKEHEKHLRLGFSHLDKNQD 99
+ D + SG I +EFI + + + F DK+
Sbjct: 372 IQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGS 431
Query: 100 GKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
GKI +EL K F + I E + +++++D + E+ FNE+ + L
Sbjct: 432 GKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
Score = 44.7 bits (106), Expect = 4e-06
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIH-------DLSKALKDFGVHSLYAQKFLERSDSNRS 68
E++++ L LD DG+G I+ D + L + + + F D + S
Sbjct: 377 STIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAF-KMF----DKDGS 431
Query: 69 GDISLAEFIHYVKEHEKHLRLG-----FSHLDKNQDGKIDLQELQKAFQ 112
G IS E + + +++ +D N+DG++D E + Q
Sbjct: 432 GKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQ 480
Score = 27.0 bits (60), Expect = 4.0
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDF 49
+ E LE + +D + +G++D ++ + L++F
Sbjct: 440 FKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNF 482
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 84.9 bits (211), Expect = 2e-21
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 8 AMLKLK----------LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA- 56
+LK L + L +F+ALD D +G + ++ LK G +
Sbjct: 35 KENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPD 94
Query: 57 -QKFLERSDSNRSGDISLAEFI-----HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKA 110
+ L DSN SG I +F+ ++ + F D + +GKI ++EL++
Sbjct: 95 IHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRI 154
Query: 111 FQ--ELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
F ++ + + LL+ +D +G EI F+E
Sbjct: 155 FGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHE 188
Score = 42.6 bits (101), Expect = 1e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLER--- 62
A + + +E F D DGNGKI + +L + + + K ++
Sbjct: 116 LAATIDKQT-YLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQ 174
Query: 63 -SDSNRSGDISLAEFI 77
D N G+I EF+
Sbjct: 175 EVDLNGDGEIDFHEFM 190
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 85.7 bits (212), Expect = 2e-21
Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 18/154 (11%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG------------VHSLY 55
+ + E ++R +LF D + GK+ ++ + +
Sbjct: 36 QAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAF 95
Query: 56 AQKFLERSDSNRSGDISLAEFI----HYVK-EHEKHLRLGFSHLDKNQDGKIDLQELQKA 110
+ S G EF+ L + F +D + + +D +E ++A
Sbjct: 96 DKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRA 155
Query: 111 FQELGI-DIDENEAKKLLKRMDKDGSLEISFNEW 143
+L + L K +DK+G+ ++F+E+
Sbjct: 156 VPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEF 189
Score = 41.8 bits (98), Expect = 3e-05
Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 29/117 (24%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDS 65
E L L D L +F +D GN +D + +A+ +
Sbjct: 117 LEFRLMLCYI-YDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVED------- 168
Query: 66 NRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE 122
A + DKN G + E + +D D +
Sbjct: 169 -------PAALFKEL--------------DKNGTGSVTFDEFAAWASAVKLDADGDP 204
Score = 39.5 bits (92), Expect = 2e-04
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE-LGIDIDENEAKKLLKRM--------- 130
E ++ F DKN+ GK+ E+ E L +D + + + KR
Sbjct: 44 AEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGS 103
Query: 131 DKDGSLEISFNEWRDFLL 148
+ F E+ +F L
Sbjct: 104 KLENKGSEDFVEFLEFRL 121
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 84.8 bits (210), Expect = 3e-21
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQ-----------KFLERSD 64
+++ +D G+G I D + + + ++
Sbjct: 10 AYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLG 69
Query: 65 SNRSGDISLAEFIHYVKEH------------EKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
IS+ E + + + +D ++DG + L E + Q
Sbjct: 70 LAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQ 129
Query: 113 ELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
+G D+ +++A +D + + +IS +E+
Sbjct: 130 AVGPDLTDDKAITCFNTLDFNKNGQISRDEF 160
Score = 53.2 bits (128), Expect = 2e-09
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS---------DS 65
+E + ++ L +I + + + D + +K + D+
Sbjct: 54 AEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDT 113
Query: 66 NRSGDISLAEFIHYVKEH-----EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120
++ G +SL EF +++ + F+ LD N++G+I E + ++E
Sbjct: 114 DKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLEE 173
Query: 121 NEAKKLL 127
Sbjct: 174 TALANAF 180
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 87.8 bits (218), Expect = 5e-21
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 4 LKCEAMLKL--KLPQEDE-ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY----- 55
L A+L + KL +E + L +F LD +G+G++D +L +
Sbjct: 336 LAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELK 395
Query: 56 -----AQKFLERSDSNRSGDISLAEFI-----HYVKEHEKHLRLGFSHLDKNQDGKIDLQ 105
L+ D +++G I +EFI + E+ LR F+ D ++ GKI +
Sbjct: 396 NVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKE 455
Query: 106 ELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
EL F I E +L D++ I F+E+ +
Sbjct: 456 ELANLFGLTS--ISEKTWNDVLGEADQNKDNMIDFDEFVSMM 495
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 83.8 bits (208), Expect = 6e-21
Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
+L +E+ L++LF +DTD +G I +L LK G + + + ++ +D ++SG
Sbjct: 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 62
Query: 71 ISLAEFIH-----YVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKK 125
I EFI E E++L FS+ DK+ G I L E+Q+A ++ G +D+
Sbjct: 63 IDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDD 120
Query: 126 LLKRMDKDGSLEISFNE 142
++K +D+D +I + E
Sbjct: 121 MIKEIDQDNDGQIDYGE 137
Score = 53.4 bits (129), Expect = 2e-09
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDS 65
A + L E EE L F D DG+G I + ++ +A KDFG+ ++ ++ D
Sbjct: 69 IAATVHLNK-LEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQ 127
Query: 66 NRSGDISLAEFIHYVK-------------EHEKHLRLGFSHLDKNQDGKIDLQELQ 108
+ G I EF ++ +LR +D + I+
Sbjct: 128 DNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKH 183
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 82.9 bits (205), Expect = 8e-21
Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 31/156 (19%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG-----------------VHSLYAQKF 59
E E R+ F D DGNG ID D S A K Q
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 60 LERSDSNRSGDISLAEFIHYVKEH------------EKHLRLGFSHLDKNQDGKIDLQEL 107
+D + I+ EF+ + L D + DG + + +
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 108 QKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
+A G + E+ A++ +D DG ++ E
Sbjct: 121 ARALTAFG--VPEDLARQAAAALDTDGDGKVGETEI 154
Score = 46.3 bits (110), Expect = 5e-07
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDIS 72
+ + L DTDG+G + + D ++AL FGV A++ D++ G +
Sbjct: 91 RFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVG 150
Query: 73 LAEFIHYVKEH 83
E + +
Sbjct: 151 ETEIVPAFARY 161
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 87.1 bits (216), Expect = 1e-20
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 4 LKCEAMLKL--KLPQEDE-ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY----- 55
L A+L + KL +DE + L +F +D +G+G++D +L + K+
Sbjct: 316 LAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASML 375
Query: 56 --------AQKFLERSDSNRSGDISLAEFI-----HYVKEHEKHLRLGFSHLDKNQDGKI 102
+ L+ D +++G I +EF+ + L F D + GKI
Sbjct: 376 DASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKI 435
Query: 103 DLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148
EL F +D K +L +DK+ E+ F+E++ LL
Sbjct: 436 SSTELATIFGVSD--VDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479
Score = 48.9 bits (117), Expect = 2e-07
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIH-------DLSKALKDFGVHSLYAQKFLERSDSNRS 68
E ++++ A+D D NG I+ D L + + + F DS+ S
Sbjct: 378 SAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAF-RMF----DSDNS 432
Query: 69 GDISLAEFIHYVKEH---EKHLRLGFSHLDKNQDGKIDLQELQKAFQEL 114
G IS E + + S +DKN DG++D E Q+ +L
Sbjct: 433 GKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 481
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 87.1 bits (216), Expect = 1e-20
Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 17/149 (11%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY----------AQKFLERS 63
QE+ + L +F +D +G+G++D +L + L +
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 64 DSNRSGDISLAEFI-----HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDI 118
D +R+G I +EF+ + L F D++ +GKI + EL F +
Sbjct: 400 DFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDH--L 457
Query: 119 DENEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ K+++ +D + ++ F E+ +
Sbjct: 458 ESKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Score = 49.3 bits (118), Expect = 1e-07
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEF 76
+++LE F D DGNGKI + +L+ + S ++ + DSN GD+ EF
Sbjct: 423 LSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEF 482
Query: 77 IHYVK 81
++
Sbjct: 483 CKMIQ 487
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 82.5 bits (204), Expect = 1e-20
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 32/158 (20%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG-----------------VHSLYAQK 58
+RL+K F D DGNG ++ D K +
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDY 62
Query: 59 FLERSDSNRSGDISLAEFIHYVKEHEKH-------------LRLGFSHLDKNQDGKIDLQ 105
+ + G ++ +FI + ++ DKN DG+I+
Sbjct: 63 LAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
Query: 106 ELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
E LG + + EA + ++D +G+ E+S +E
Sbjct: 123 EFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDEL 158
Score = 50.5 bits (121), Expect = 2e-08
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 13/124 (10%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKID----IHDLSKALKDFGVHSL------YAQKFLER 62
L + L +G + I + + G S + +
Sbjct: 51 TLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGM 110
Query: 63 SDSNRSGDISLAEFIHYVKEH---EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDID 119
D N G I+ EF ++ + F+ +D N +G++ L EL A ++
Sbjct: 111 CDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHFGRL 170
Query: 120 ENEA 123
+ E
Sbjct: 171 DVEL 174
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 82.5 bits (204), Expect = 1e-20
Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 29/159 (18%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG------------VHSLYAQKFLE-RS 63
++++ F +D D +G I D + F + + +
Sbjct: 3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLT 62
Query: 64 DSNRSGDISLAEFIHYVKEHEKH----------LRLGFSHLDKNQDGKIDLQELQKAFQE 113
I FI+ +KE K+ L L F +D N+D I E F
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM 122
Query: 114 LGIDIDENEAKKLLKRMDKDGSLEISFNE----WRDFLL 148
LG +D+ A +D + +S E DF +
Sbjct: 123 LG--LDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFFM 159
Score = 49.3 bits (118), Expect = 4e-08
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDIS 72
+ E L F A+DT+ + I + G+ A + D+N G +S
Sbjct: 87 EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLS 146
Query: 73 LAEFIHYVKEH 83
L EF+ +
Sbjct: 147 LEEFVIAGSDF 157
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 82.2 bits (204), Expect = 1e-20
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRS 68
++ L +E ++ + + F DTDG+G ID +L A++ G +K + D + S
Sbjct: 19 RVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGS 78
Query: 69 GDISLAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE 122
G I EF+ + + + F D + G I +++L++ +ELG ++ E E
Sbjct: 79 GTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEE 138
Query: 123 AKKLLKRMDKDGSLEISFNE 142
++++ D++ EI +E
Sbjct: 139 LQEMIAEADRNDDNEIDEDE 158
Score = 36.4 bits (85), Expect = 0.002
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERS 63
M ++ E + K F D D +G I I DL + K+ G + Q+ + +
Sbjct: 87 LTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEA 146
Query: 64 DSNRSGDISLAEFI 77
D N +I EFI
Sbjct: 147 DRNDDNEIDEDEFI 160
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 81.5 bits (202), Expect = 2e-20
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 11/147 (7%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSD 64
+A + L +E + F D DG G I +L ++ G + +E D
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVD 66
Query: 65 SNRSGDISLAEFIH---------YVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG 115
+ SG I EF+ + E+ L F DKN DG ID++EL + + G
Sbjct: 67 EDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATG 126
Query: 116 IDIDENEAKKLLKRMDKDGSLEISFNE 142
+ E + + L+K DK+ I F+E
Sbjct: 127 EHVTEEDIEDLMKDSDKNNDGRIDFDE 153
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 79.9 bits (198), Expect = 5e-20
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISLAEFI-- 77
E LF +D +G+G + ++ + Q + D++ +G+I EF
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 78 ------HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131
+ + + L++ + +D + DGK+ +E+ F++ GI+ + + + + D
Sbjct: 62 YGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIE----KVAEQVMKAD 117
Query: 132 KDGSLEISFNEWRDFLL 148
+G I+ E+ +F L
Sbjct: 118 ANGDGYITLEEFLEFSL 134
Score = 39.0 bits (92), Expect = 1e-04
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEF 76
+D+ L+ L+ +D DG+GK+ +++ K G+ + + + ++D+N G I+L EF
Sbjct: 72 DDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKV--AEQVMKADANGDGYITLEEF 129
Query: 77 I 77
+
Sbjct: 130 L 130
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 80.6 bits (200), Expect = 7e-20
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
+L +E ++ F D DG+G I +L ++ G + A Q + D++ +G
Sbjct: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
Query: 71 ISLAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
I EF+ + E+ +R F DK+ +G I EL+ LG + + E
Sbjct: 64 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 123
Query: 125 KLLKRMDKDGSLEISFNE 142
++++ D DG ++++ E
Sbjct: 124 EMIREADIDGDGQVNYEE 141
Score = 45.6 bits (109), Expect = 9e-07
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERS 63
M + + EE + + F D DGNG I +L + + G + + +
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 64 DSNRSGDISLAEFIHYVK---------EHEKHLRLGFSHLDKNQDGKIDL 104
D + G ++ EF+ + ++ +R + K L
Sbjct: 130 DIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSVL 179
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 80.7 bits (199), Expect = 8e-20
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 34/164 (20%)
Query: 14 LPQEDEERLEKLFVA-LDTDGNGKIDIHDLSKALKDFGVHSL-----------------Y 55
L +++++ F LD + +G I +D + + +
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 56 AQKFLERSDSNRSGDISLAEFIHYVKEH--------------EKHLRLGFSHLDKNQDGK 101
+ R+D N+ +S E++ ++ + + F +D + DG
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGI 121
Query: 102 IDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRD 145
+DL+E Q + + + + + G + N +++
Sbjct: 122 VDLEEFQNYCKNFQLQCA--DVPAVYNVITDGGKVTFDLNRYKE 163
Score = 48.4 bits (115), Expect = 9e-08
Identities = 12/82 (14%), Positives = 22/82 (26%)
Query: 1 MLTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFL 60
LP + R+ LF +D G+G +D+ + K+F +
Sbjct: 86 WEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVY 145
Query: 61 ERSDSNRSGDISLAEFIHYVKE 82
L +
Sbjct: 146 NVITDGGKVTFDLNRYKELYYR 167
Score = 47.2 bits (112), Expect = 3e-07
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 14/123 (11%)
Query: 19 EERLEKLFVALDTDGNGKID----IHDLSKALKDFGVHS-------LYAQKFLERSDSNR 67
E+ L D + + + + K + + + D +
Sbjct: 59 EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Query: 68 SGDISLAEFIHYVKEH---EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
G + L EF +Y K + ++ + DL ++ + L +
Sbjct: 119 DGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADAGN 178
Query: 125 KLL 127
L+
Sbjct: 179 TLM 181
Score = 35.3 bits (81), Expect = 0.004
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 84 EKHLRLGF-SHLDKNQDGKIDLQELQKAFQELGI---------------DIDENEAKKLL 127
++ ++ F LD N DG I + + E+E + L
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 128 KRMDKDGSLEISFNEWRDFL 147
R D + +S+ E+
Sbjct: 67 GRADINKDDVVSWEEYLAMW 86
Score = 28.7 bits (64), Expect = 0.66
Identities = 2/32 (6%), Positives = 9/32 (28%)
Query: 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKDF 49
+ ++ + G D++ +
Sbjct: 137 QCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 79.8 bits (198), Expect = 8e-20
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
+L +E ++ F D DG+G I +L ++ G + A Q + D++ +G
Sbjct: 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 62
Query: 71 ISLAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
I EF+ + E+ L F D++ +G I EL+ LG + ++E
Sbjct: 63 IDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVD 122
Query: 125 KLLKRMDKDGSLEISFNE 142
++++ D DG I++ E
Sbjct: 123 EMIREADIDGDGHINYEE 140
Score = 31.7 bits (73), Expect = 0.061
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERS 63
M + Q+ EE L + F D DGNG I +L + + G + + +
Sbjct: 69 LSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128
Query: 64 DSNRSGDISLAEFIH 78
D + G I+ EF+
Sbjct: 129 DIDGDGHINYEEFVR 143
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 79.5 bits (197), Expect = 1e-19
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGD 70
+L +E ++ + + F D + +G +D H+L A+K G + ++ DS
Sbjct: 16 ELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHL 75
Query: 71 ISLAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
+ +F + E ++ F D + GKI ++ L++ +ELG + + E +
Sbjct: 76 MKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELR 135
Query: 125 KLLKRMDKDGSLEISFNE 142
+++ D DG EI+ NE
Sbjct: 136 AMIEEFDLDGDGEINENE 153
Score = 35.2 bits (82), Expect = 0.004
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERS 63
M + L ++ + +++ F D D GKI I +L + K+ G + +E
Sbjct: 82 YIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEF 141
Query: 64 DSNRSGDISLAEFI 77
D + G+I+ EFI
Sbjct: 142 DLDGDGEINENEFI 155
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 80.4 bits (199), Expect = 1e-19
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA-------------QKFL 60
E+ + L ++F LD +G+G++D +L + + L
Sbjct: 34 TTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHIL 93
Query: 61 ERSDSNRSGDISLAEFI-----HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG 115
+ D +R+G I +EF+ + + L F D + GKI +EL + F
Sbjct: 94 QSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTE 153
Query: 116 IDIDENEAKKLLKRMDKDGSLEISFNE 142
+D+ ++L+ DK+ E+ F E
Sbjct: 154 --VDDETWHQVLQECDKNNDGEVDFEE 178
Score = 47.3 bits (113), Expect = 2e-07
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDS 65
+ +L ERL F D+DG+GKI +L + V + L+ D
Sbjct: 110 VTVCMDKQL-LLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDK 168
Query: 66 NRSGDISLAEFI 77
N G++ EF+
Sbjct: 169 NNDGEVDFEEFV 180
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 80.5 bits (199), Expect = 2e-19
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 1 MLTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QK 58
M L+ + L + L + F LD DG+ +D + + L G+ A +
Sbjct: 21 MEKLRAQC---LSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEG 77
Query: 59 FLERSDSNRSGDISLAEFIHYVK-----EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ- 112
+ D N SG + L EF+ ++ E + F+ LD++ DG + + +L+ +
Sbjct: 78 VCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSG 137
Query: 113 ------ELGIDIDENEAKKLLK---RMDKDGSLEISFNEWRDF 146
G ++ ++ L +KDG +++ E++D+
Sbjct: 138 RAHPKVRSGEWTEDEVLRRFLDNFDSSEKDG--QVTLAEFQDY 178
Score = 43.1 bits (102), Expect = 1e-05
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNR 67
L+ + Q E + F LD G+G + + DL + + ++ E
Sbjct: 97 RALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTE------ 150
Query: 68 SGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE 122
D L F+ +DG++ L E Q + + ++ +E
Sbjct: 151 --DEVLRRFLDNFD-------------SSEKDGQVTLAEFQDYYSGVSASMNTDE 190
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 78.3 bits (194), Expect = 3e-19
Identities = 31/135 (22%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISL 73
+E ++ + + F D DG G ID+ +L A++ G +K + D +G ++
Sbjct: 2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 61
Query: 74 AEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLL 127
+F+ + + ++ + F D ++ GKI + L++ +ELG ++ + E ++++
Sbjct: 62 GDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMI 121
Query: 128 KRMDKDGSLEISFNE 142
D+DG E+S E
Sbjct: 122 DEADRDGDGEVSEQE 136
Score = 35.1 bits (82), Expect = 0.004
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERS 63
M + ++ +E + K F D D GKI +L + K+ G + Q+ ++ +
Sbjct: 65 LTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 124
Query: 64 DSNRSGDISLAEFI 77
D + G++S EF+
Sbjct: 125 DRDGDGEVSEQEFL 138
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 79.9 bits (197), Expect = 3e-19
Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 29/157 (18%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG---------VHSLYA--QKFLER 62
L + RL K F D D +GK+++ ++ V + + F
Sbjct: 30 LHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLH 89
Query: 63 SDSNRSGDISLAEFIHYVKEHEKH----------------LRLGFSHLDKNQDGKIDLQE 106
+ +++ + + + LD + DG +D+ E
Sbjct: 90 KGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDE 149
Query: 107 LQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
L+ + + + A ++ D D S ++ E
Sbjct: 150 LKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERTEL 184
Score = 49.8 bits (119), Expect = 5e-08
Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS------------ 63
++ + + F+ + + D +A + F ++ E S
Sbjct: 77 EKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDV 136
Query: 64 -DSNRSGDISLAEFIHYVKEH---EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDID 119
D + G + + E +K ++ F D ++ GK++ EL F++ ++
Sbjct: 137 LDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFRKFWMEPY 196
Query: 120 ENEAKKL 126
+ + +
Sbjct: 197 DPQWDGV 203
Score = 43.7 bits (103), Expect = 5e-06
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGD 70
+ P + LD DG+G +D+ +L +K F V A F E++D+++SG
Sbjct: 119 RRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGK 178
Query: 71 ISLAEFIHYVKEH 83
+ E +H ++
Sbjct: 179 LERTELVHLFRKF 191
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 79.1 bits (195), Expect = 4e-19
Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 38/172 (22%)
Query: 13 KLPQEDEERLEKLFVAL-DTDGNGKIDIHDLSKALKDFG-----------------VHSL 54
+L ++ ++F D + +G I+ D A+K L
Sbjct: 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKL 64
Query: 55 YAQKFLERSDSNRSGDISLAEFIHYVKEHEKH--------------LRLGFSHLDKNQDG 100
+ +D N ++ E++ E K + F D + D
Sbjct: 65 IWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDN 124
Query: 101 KIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNE----WRDFLL 148
ID E + GI + + G ++ W ++ +
Sbjct: 125 IIDKHEYSTVYMSYGIPKS--DCDAAFDTLSDGGKTMVTREIFARLWTEYFV 174
Score = 53.3 bits (128), Expect = 2e-09
Identities = 11/123 (8%), Positives = 31/123 (25%), Gaps = 14/123 (11%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS--------- 63
+ + + L D + + ++ + K + + E
Sbjct: 57 EARATLKLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFD 116
Query: 64 --DSNRSGDISLAEFIHYVKEH---EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDI 118
D++ I E+ + + F L + + + + E +
Sbjct: 117 VNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFVSN 176
Query: 119 DEN 121
D
Sbjct: 177 DRG 179
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 77.3 bits (191), Expect = 8e-19
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAE 75
++ +RL K F LD D +G + + + +L + + L Q+ ++ D++ +G++ E
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSLSVEEF-MSLPELQQNPL-VQRVIDIFDTDGNGEVDFKE 59
Query: 76 FI------HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-GIDIDENEAKKLLK 128
FI + E+ LR F D ++DG I EL + + + G ++ + + ++++
Sbjct: 60 FIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVD 119
Query: 129 RM----DKDGSLEISFNEWRDFL 147
+ DKDG ISF E+ +
Sbjct: 120 KTIINADKDGDGRISFEEFCAVV 142
Score = 39.5 bits (93), Expect = 1e-04
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 8 AMLKLKLPQED-EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-------YAQKF 59
+ + D E++L F D D +G I +L + LK ++L K
Sbjct: 62 EGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKT 121
Query: 60 LERSDSNRSGDISLAEFIHYVK 81
+ +D + G IS EF V
Sbjct: 122 IINADKDGDGRISFEEFCAVVG 143
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 80.7 bits (199), Expect = 1e-18
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 1 MLTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QK 58
+L K E + +L +E ++ F D DG+G I +L ++ G + A Q
Sbjct: 293 ILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQD 352
Query: 59 FLERSDSNRSGDISLAEFIHYV------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
+ D++ +G I EF+ + + E+ +R F DK+ +G I EL+
Sbjct: 353 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT 412
Query: 113 ELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
LG + + E ++++ D DG ++++ E
Sbjct: 413 NLGEKLTDEEVDEMIREADIDGDGQVNYEE 442
Score = 60.3 bits (146), Expect = 2e-11
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 10/134 (7%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISL 73
E + D ++ L + L+ D G+I
Sbjct: 241 FKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDT-----LVNRIELKGIDFKEDGNILG 295
Query: 74 AEFIHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLK 128
+ + +E + FS DK+ DG I +EL + LG + E E + ++
Sbjct: 296 HKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 355
Query: 129 RMDKDGSLEISFNE 142
+D DG+ I F E
Sbjct: 356 EVDADGNGTIDFPE 369
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 77.5 bits (191), Expect = 2e-18
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE--RS-----DSN 66
P + ++ L F A +G+ID +L + L G+ Y LE R D +
Sbjct: 27 FPGQTQDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD 85
Query: 67 RSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126
SG + EF R F D ++ G +D QELQKA +G + +
Sbjct: 86 MSGTMGFNEFKELWA-VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSI 144
Query: 127 LKRMDKDGSLEISFNE 142
KR +G +I+F++
Sbjct: 145 AKRYSTNG--KITFDD 158
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH--SLYAQKFLERSDSNRSGDISLAEFI 77
+ F++ DTD +G +D +L KAL G +R +G I+ ++I
Sbjct: 103 NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS--TNGKITFDDYI 160
Query: 78 HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQ 108
+ L F D Q G ++
Sbjct: 161 ACCV-KLRALTDSFRRRDTAQQGVVNFPYDD 190
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 75.6 bits (187), Expect = 3e-18
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
L +E ++ F D D +G I +L+ ++ G+ A + D + +
Sbjct: 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHA 63
Query: 71 ISLAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
I +EF+ + E+ L F DKN DG I EL+ +G + + E
Sbjct: 64 IEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVD 123
Query: 125 KLLKRMDKDGSLEISFNE 142
++L+ + DGS EI+ +
Sbjct: 124 EMLREVS-DGSGEINIKQ 140
Score = 30.5 bits (70), Expect = 0.13
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50
M + + E+ L + F D +G+G I +L L G
Sbjct: 70 LALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIG 114
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 75.3 bits (186), Expect = 6e-18
Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 7/137 (5%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDIS 72
+ + E ++ F +D + +G ID DL + G + L+ SG I+
Sbjct: 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMG-RLNVKNEELDAMIKEASGPIN 76
Query: 73 LAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126
F+ E E + F LD + G I L++ G E K +
Sbjct: 77 FTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNM 136
Query: 127 LKRMDKDGSLEISFNEW 143
D + + +
Sbjct: 137 WAAFPPDVAGNVDYKNI 153
Score = 32.6 bits (75), Expect = 0.031
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 8 AMLKLKLPQED-EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSD 64
M KL D E+ + F LD DG G I L + L G +
Sbjct: 82 TMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFP 141
Query: 65 SNRSGDISLAEFIHYVKEHEK 85
+ +G++ + + E
Sbjct: 142 PDVAGNVDYKNICYVITHGED 162
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 75.6 bits (186), Expect = 1e-17
Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 16/149 (10%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSG 69
+P ++ + F + +G +H+ L G++ + + + D+N+ G
Sbjct: 15 AVPTQETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDG 72
Query: 70 DISLAEFIHYVK-----EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE-- 122
+ EFI V + E+ L+ F D + +G ID EL F + +
Sbjct: 73 FVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLS 132
Query: 123 ----AKKLLKRMDKDGSLEISFNEWRDFL 147
+ ++D + E++ E+ + +
Sbjct: 133 PEEFINLVFHKIDINNDGELTLEEFINGM 161
Score = 47.1 bits (112), Expect = 3e-07
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL--------YAQKF 59
A + L + ++ E++L+ F D DGNG ID ++L + +
Sbjct: 81 AAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLV 140
Query: 60 LERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE 113
+ D N G+++L EFI+ + + + L + + D + ++ Q +
Sbjct: 141 FHKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICNGKQPDMET 194
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 73.7 bits (182), Expect = 2e-17
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 13 KLPQEDEERLEKLFVALDTDGN-GKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSG 69
+L +E + + F G I +L K ++ G + Q+ ++ D + SG
Sbjct: 11 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSG 70
Query: 70 DISLAEFIHYV---------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120
+ EF+ + + E+ L F DKN DG IDL+EL+ Q G I E
Sbjct: 71 TVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITE 130
Query: 121 NEAKKLLKRMDKDGSLEISFNE 142
++ ++L+K DK+ I ++E
Sbjct: 131 DDIEELMKDGDKNNDGRIDYDE 152
Score = 33.3 bits (77), Expect = 0.016
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSN 66
+K + EE L LF D + +G ID+ +L L+ G ++ ++ D N
Sbjct: 84 SMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKN 143
Query: 67 RSGDISLAEFI 77
G I EF+
Sbjct: 144 NDGRIDYDEFL 154
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 73.4 bits (181), Expect = 3e-17
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 13 KLPQEDEERLEKLFVALDT-DGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSG 69
KL + LE F +T +G+G++ + L+ G+ + ++ ++ D +G
Sbjct: 6 KLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNG 65
Query: 70 DISLAEFI----HYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDID 119
DI F ++ E ++ LR F DK +G I +++ EL +
Sbjct: 66 DIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLS 125
Query: 120 ENEAKKLLKRMDKDGSLEISFNE 142
+ ++ +D DGS + F E
Sbjct: 126 SEDLDAMIDEIDADGSGTVDFEE 148
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 2 LTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKF 59
+ + + P++ ++ L + F D +GNG I + + L +
Sbjct: 73 KIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAM 132
Query: 60 LERSDSNRSGDISLAEFI 77
++ D++ SG + EF+
Sbjct: 133 IDEIDADGSGTVDFEEFM 150
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 73.6 bits (181), Expect = 5e-17
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 28/158 (17%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDL-----SKALKDFG-------VHSLYAQKFL 60
+R + +F LD +GNGKI + ++ H + + F
Sbjct: 13 FDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFF 72
Query: 61 ERSDSNRSGDISLAEFIHYVK----------------EHEKHLRLGFSHLDKNQDGKIDL 104
+I+ +F+ K + F DK+ G I L
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITL 132
Query: 105 QELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
E + + GI + + + + D D + ++ +E
Sbjct: 133 DEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDE 170
Score = 35.1 bits (81), Expect = 0.005
Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 29/110 (26%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLA 74
P E + +F D DG+G I + + K G+
Sbjct: 108 PTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGI---------------SPSQEDCE 152
Query: 75 EFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
H D + G +D+ E+ + +D
Sbjct: 153 ATF--------------RHCDLDNAGDLDVDEMTRQHLGFWYTLDPEADG 188
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 71.4 bits (176), Expect = 1e-16
Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 8/136 (5%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISL 73
Q + ++ F +D + +G ID DL L G + LE S G I+
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEY--LEGMMSEAPGPINF 58
Query: 74 AEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLL 127
F+ E E +R F+ D+ G I L++ +G + E ++
Sbjct: 59 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMY 118
Query: 128 KRMDKDGSLEISFNEW 143
+ D ++ E+
Sbjct: 119 REAPIDKKGNFNYVEF 134
Score = 31.7 bits (73), Expect = 0.048
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 8 AMLKLKLPQED-EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKF------- 59
M KL D E+ + F D + +G I L + L G +F
Sbjct: 63 TMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMG------DRFTDEEVDE 116
Query: 60 -LERSDSNRSGDISLAEFIHYVKEHEK 85
+ ++ G+ + EF +K K
Sbjct: 117 MYREAPIDKKGNFNYVEFTRILKHGAK 143
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 71.4 bits (176), Expect = 2e-16
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
L E+ E L + F D D +G I+ DL ++ G + ++ + N G
Sbjct: 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH 63
Query: 71 ISLAEFIHYV----------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE-LGIDID 119
+ +F+ + K LR F D N DG+I EL++A + LG +
Sbjct: 64 VDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVG 123
Query: 120 ENEAKKLLKRMDKDGSLEISFNE 142
+ +++++ +D +G + F E
Sbjct: 124 HRDIEEIIRDVDLNGDGRVDFEE 146
Score = 31.7 bits (73), Expect = 0.048
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 2 LTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY---AQK 58
+ L +L + L F DT+G+G+I +L +A++ H + ++
Sbjct: 70 VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEE 129
Query: 59 FLERSDSNRSGDISLAEFI 77
+ D N G + EF+
Sbjct: 130 IIRDVDLNGDGRVDFEEFV 148
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 72.1 bits (177), Expect = 2e-16
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 32/164 (19%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL------------YAQKFLERSD 64
R + +F LD + NGKI + ++ D +++L + F +
Sbjct: 13 RWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAG 72
Query: 65 SNRSGDISLAEFI----HYVKEHEKHLRLG------------FSHLDKNQDGKIDLQELQ 108
+ +I + + F +DK+Q+G I L E +
Sbjct: 73 MKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWK 132
Query: 109 KAFQELGIDIDENEAKKLLKRMDKDGSLEISFNE----WRDFLL 148
+ GI + ++ + D D S ++ +E F
Sbjct: 133 AYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWY 176
Score = 40.9 bits (96), Expect = 5e-05
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 29/110 (26%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLA 74
P + LF +D D NG I + + K G+
Sbjct: 104 PTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGI----------------------- 140
Query: 75 EFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
+ + F D ++ G++D+ E+ + +D K
Sbjct: 141 ------IQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMDPACEK 184
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 69.8 bits (172), Expect = 4e-16
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 9/125 (7%)
Query: 26 FVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISLAEFIHYVKEH 83
F D++ G I L LK FGV A + +D+ +G I EF+ +
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRR 71
Query: 84 ------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLE 137
E LR F D G I LQ A LG + +E + L + + +
Sbjct: 72 MKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQ 130
Query: 138 ISFNE 142
I ++
Sbjct: 131 IRYDN 135
Score = 30.5 bits (70), Expect = 0.14
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50
M + E+ L + F D +G G I L AL + G
Sbjct: 65 LSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLG 109
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 72.2 bits (177), Expect = 4e-16
Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 30/162 (18%)
Query: 12 LKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--------VHSLYAQKFLERS 63
L+ + ++++ D DG+G ++ +L +++ S + F+++
Sbjct: 8 LQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQY 67
Query: 64 DSNRSGDISLAEFIHYV--------------KEHEKHLRLGFSHLDKNQDGKIDLQELQK 109
G I + E H + + + + D + G I+ +EL+
Sbjct: 68 GQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKN 127
Query: 110 AFQELG--------IDIDENEAKKLLKRMDKDGSLEISFNEW 143
++L +LK D + ++ E
Sbjct: 128 FLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEM 169
Score = 68.4 bits (167), Expect = 1e-14
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 28/170 (16%)
Query: 1 MLTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL------ 54
+ T + +L + E K + DTD +G I+ +L LKD +
Sbjct: 84 LPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDT 143
Query: 55 ----YAQKFLERSDSNRSGDISLAEFIHYVK-------------EHEKHLRLGFSHLDKN 97
Y L+ DSN G + L E + K F D++
Sbjct: 144 KLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQD 203
Query: 98 QDGKIDLQELQKAFQELGIDIDENEAKKLLKR-----MDKDGSLEISFNE 142
+G ID EL ++L + + M ++ +
Sbjct: 204 GNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTD 253
Score = 46.4 bits (110), Expect = 9e-07
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 74 AEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE------NEAKKLL 127
+ + H D + G ++ +ELQ QEL + E K +
Sbjct: 5 ESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFV 64
Query: 128 KRMDKDGSLEISFNEWRDFL 147
+ + +I E L
Sbjct: 65 DQYGQRDDGKIGIVELAHVL 84
Score = 40.2 bits (94), Expect = 1e-04
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 1 MLTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFL 60
+L ++ +LK + + + K F D DGNG ID ++L LKD
Sbjct: 172 LLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLC---------- 221
Query: 61 ERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQK 109
++ + Y K + + + GK+ +L
Sbjct: 222 ----EKNKQELDINNISTYKK----------NIMALSDGGKLYRTDLAL 256
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 69.3 bits (170), Expect = 1e-15
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE--RS-----DSNRSGDIS 72
+ L F ++ +G+ID +L + L G+ Y LE R D + SG +
Sbjct: 2 DPLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 73 LAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDK 132
EF + R F D ++ G +D QELQKA +G ++ + KR
Sbjct: 61 FNEFKE-LWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYST 119
Query: 133 DGSLEISFNEW 143
G I+F+++
Sbjct: 120 SGK--ITFDDY 128
Score = 44.3 bits (105), Expect = 3e-06
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH--SLYAQKFLERSDSNRSGDISLAEF 76
+ F++ D+D +G +D +L KAL G +R SG I+ ++
Sbjct: 71 LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYS--TSGKITFDDY 128
Query: 77 IHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQ 108
I + L F D Q G ++
Sbjct: 129 IACCV-KLRALTDSFRRRDSAQQGMVNFSYDD 159
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 67.9 bits (167), Expect = 3e-15
Identities = 22/137 (16%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDIS 72
KLPQ+ + +++ F +D D +G + D+ + G + L G ++
Sbjct: 11 KLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKE--LTAMLKEAPGPLN 68
Query: 73 LAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126
F+ + E+ +R F+ D+ + K++++ ++ + +G + +++E +
Sbjct: 69 FTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMT 128
Query: 127 LKRMDKDGSLEISFNEW 143
K +G + + ++
Sbjct: 129 FKEAPVEGG-KFDYVKF 144
Score = 33.6 bits (78), Expect = 0.012
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 33/90 (36%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLK-----------------RM--- 130
FS +D ++DG + ++++ ++LG D+ E +LK ++
Sbjct: 24 FSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGT 83
Query: 131 -------------DKDGSLEISFNEWRDFL 147
D+ + +++ +D L
Sbjct: 84 DSEETIRNAFAMFDEQETKKLNIEYIKDLL 113
Score = 30.6 bits (70), Expect = 0.14
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 8 AMLKLKLPQED-EERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50
++ KL D EE + F D K++I + L++ G
Sbjct: 74 SIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMG 117
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 68.6 bits (168), Expect = 4e-15
Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSG 69
+L + + K F + +G++ +++ + + + Y ++ E D N+ G
Sbjct: 10 ELSATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDG 67
Query: 70 DISLAEFIHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI-------D 117
I E++ + + ++ LR F D + +G ID EL + +
Sbjct: 68 YIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAM 127
Query: 118 IDENEAKKLLKRMDKDGSLEISFNEWRDFLL 148
E + ++D +G E+S E+ + +
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGVQ 158
Score = 42.5 bits (100), Expect = 2e-05
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL---------YAQK 58
A L L L + +++L F D DGNG ID +L +K + +
Sbjct: 76 AALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNM 135
Query: 59 FLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
++ D N G++SL EF+ V++ E L +
Sbjct: 136 VFDKIDINGDGELSLEEFMEGVQKDEVLLDI 166
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 67.2 bits (165), Expect = 5e-15
Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSN 66
E++ ++ +E + + + GKI I + S + G+ ++
Sbjct: 2 ESVADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSID--EKKIKEL 59
Query: 67 RSGDISLAEFIHYV------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120
+++ +++ Y+ K++ + L F+H D N G + +++ G + +
Sbjct: 60 YGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTD 119
Query: 121 NEAKKLLKRMDKDGSLEISFNE 142
EA L + I +
Sbjct: 120 QEAIDALNAFSSED--NIDYKL 139
Score = 28.7 bits (65), Expect = 0.65
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50
E + +++ E L K+F D + G + + L +G
Sbjct: 70 LEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWG 114
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 67.4 bits (165), Expect = 7e-15
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 13/136 (9%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERS--------DSN 66
E+ + +LF L D + ++ +L L L F + DS+
Sbjct: 1 EEVRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 67 RSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126
+G + EF + + + K + + D ++ G I EL AF+ G ++ +
Sbjct: 60 TTGKLGFEEFKY-LWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLN-EHLYSM 117
Query: 127 LKRMDKDGSLEISFNE 142
+ R D + F+
Sbjct: 118 IIRRYSDEGGNMDFDN 133
Score = 52.8 bits (127), Expect = 2e-09
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVH-SLYAQKFLERSDSNRSGDISLAEFIHYV 80
+ ++ D D +G I +L A + G H + + + R S+ G++ FI +
Sbjct: 79 WQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCL 138
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQ 108
+ F LDK+ G+I + +
Sbjct: 139 V-RLDAMFRAFKSLDKDGTGQIQVNIQE 165
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 67.0 bits (164), Expect = 8e-15
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE--RS-----DSNRSGDISLA 74
+ F A+ +G++D +L + L G++ Y+ LE R D + +G +
Sbjct: 2 VYTYFSAV-AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Query: 75 EFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDG 134
F + + F +D++ G ++ EL++A +G + ++KR K+G
Sbjct: 61 AFKE-LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG 119
Query: 135 SLEISFNE 142
I F++
Sbjct: 120 --RIFFDD 125
Score = 43.9 bits (104), Expect = 3e-06
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSGDISLAEF 76
++ F+ +D DG+G ++ H+L +A+ G + ++R ++G I ++
Sbjct: 69 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KNGRIFFDDY 126
Query: 77 IHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQ 108
+ + L F D Q G +
Sbjct: 127 VACCV-KLRALTDFFRKRDHLQQGSANFIYDD 157
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 67.9 bits (166), Expect = 8e-15
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 20 ERLEKLFVALDTD--GNGKIDIHDLSKALKDFGVH-SLYAQKFLERSDSNRSGDISLAEF 76
E L +LF L + +G I + AL +L+A + + D R+G I EF
Sbjct: 37 EALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEF 96
Query: 77 I------HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL----GIDIDENEAK-- 124
+ H + ++ F D Q G I+ +EL++ L + + E+ +
Sbjct: 97 VRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVM 156
Query: 125 --KLLKRMDKDGSLEISFNEWRDFLLYCP 151
K + D+ +I +EW+DF+ P
Sbjct: 157 VDKAFVQADRKNDGKIDIDEWKDFVSLNP 185
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 67.1 bits (164), Expect = 2e-14
Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 25/159 (15%)
Query: 13 KLPQEDEERLEKLFVA-LDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSDSNRSG 69
+ D +L++ + L+ +G + +H+ + K + Y + D+N
Sbjct: 15 AVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDN 74
Query: 70 DISLAEFIHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAF------------- 111
I E++ + E L+ F DK+++G ID QEL
Sbjct: 75 TIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVE 134
Query: 112 ----QELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDF 146
Q+ + E ++ +D++G ++S NE+ +
Sbjct: 135 VEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEG 173
Score = 41.7 bits (98), Expect = 2e-05
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNR 67
A L L L E +L+ F D D NG ID +L ++ +E +
Sbjct: 83 AALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGK 142
Query: 68 SGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
E+ + F +D+N DG++ L E + +
Sbjct: 143 LLTP------------EEVVDRIFLLVDENGDGQLSLNEFVEGAR 175
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 67.2 bits (164), Expect = 2e-14
Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 17/145 (11%)
Query: 20 ERLEKLFVALDTD--GNGKIDIHDLSKALKDFGVH-SLYAQKFLERSDSNRSGDISLAEF 76
E L +LF + + +G I+ + AL SL+A + + D+ +G + EF
Sbjct: 48 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEF 107
Query: 77 IHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKA----FQELGIDIDENE---- 122
+ + + F D Q G I+ QE+++ E G+++ +
Sbjct: 108 ARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDI 167
Query: 123 AKKLLKRMDKDGSLEISFNEWRDFL 147
K + D +I EWR +
Sbjct: 168 IDKTFEEADTKHDGKIDKEEWRSLV 192
Score = 40.2 bits (94), Expect = 9e-05
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHS----------LYAQKFLERSDSN 66
++++ F D G I+ ++ + + S K E +D+
Sbjct: 119 PIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTK 178
Query: 67 RSGDISLAEFIHYVKEHE 84
G I E+ V H
Sbjct: 179 HDGKIDKEEWRSLVLRHP 196
Score = 27.5 bits (61), Expect = 1.8
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKD 48
E+ ++K F DT +GKID + +
Sbjct: 161 DTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 65.3 bits (160), Expect = 3e-14
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG-------VHSLYAQKFLERSDS 65
+ ++ E ++ F D G+GKI ++ G V + +SD
Sbjct: 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNP---KSDE 59
Query: 66 NRSGDISLAEFI----HYVKEHEKH----LRLGFSHLDKNQDGKIDLQELQKAFQELGID 117
+S + F+ K + GF DK +GK+ EL+ LG
Sbjct: 60 LKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEK 119
Query: 118 IDENEAKKLLKRMDKDGSLEISFNEW 143
+ E E + +L +D + I++ +
Sbjct: 120 MTEEEVETVLAG-HEDSNGCINYEAF 144
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 64.5 bits (158), Expect = 5e-14
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 26 FVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFL-ERSDSNRSGDISLAEFIH---- 78
F D G G I L L+ G + Q + S + ++L +
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEV 69
Query: 79 -------YVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131
K + F DK GK+ + +L+ LG + + E +LLK ++
Sbjct: 70 NEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVE 129
Query: 132 KDGSLEISFNEW 143
D + EI + ++
Sbjct: 130 VDSNGEIDYKKF 141
Score = 29.5 bits (67), Expect = 0.33
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDIS 72
+ E K F D + GK+ + DL L G A + L+ + + +G+I
Sbjct: 78 TKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEID 137
Query: 73 LAEFIHYVK 81
+FI V
Sbjct: 138 YKKFIEDVL 146
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 64.1 bits (157), Expect = 9e-14
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSN 66
EA ++KL Q + L++ F +D D +G I + DL G + L
Sbjct: 3 EAPRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDE--LNAMLKE 60
Query: 67 RSGDISLAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120
G ++ F+ E E LR FS D++ G I L+ + +G + +
Sbjct: 61 CPGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSK 120
Query: 121 NEAKKLLKRMDKDGSLEISFNEW 143
E K + K + ++N+
Sbjct: 121 EEIKNVWKDAPLKNK-QFNYNKM 142
Score = 32.1 bits (74), Expect = 0.039
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 33/90 (36%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLK-----------------RM--- 130
F+ +D+++DG I +++L+ F LG ++E +LK ++
Sbjct: 22 FTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGT 81
Query: 131 -------------DKDGSLEISFNEWRDFL 147
D+DG I + +D L
Sbjct: 82 DPEDALRNAFSMFDEDGQGFIPEDYLKDLL 111
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 63.3 bits (155), Expect = 2e-13
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISL 73
D+ +++ F D D +GK+ I +L AL+ G + A + ++ L
Sbjct: 3 SADQ--IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE---FDL 57
Query: 74 AEFIHYV-------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKL 126
A F E K + F LDK +G I EL++ LG + +E ++L
Sbjct: 58 ATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEEL 117
Query: 127 LKRMDKDGSLEISFNE 142
+K + G I++
Sbjct: 118 MKEVSVSGDGAINYES 133
Score = 30.2 bits (69), Expect = 0.16
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRS 68
+K P E + + F ALD +GNG I +L + L + G + ++ ++ +
Sbjct: 67 PIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGD 126
Query: 69 GDISLAEFIHYVK 81
G I+ F+ +
Sbjct: 127 GAINYESFVDMLV 139
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 62.9 bits (154), Expect = 2e-13
Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 12/154 (7%)
Query: 13 KLPQEDEERLEKLFVALD--TDGNGKIDIHDLSKALKDFGVHSLYAQ-KFLERSDSNRSG 69
KL Q++ + L+ +F D +G +D L + G++ + +
Sbjct: 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEK 61
Query: 70 DISLAEFIHYV-------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE 122
+ EF+ + F D+ G I EL+ LG + + +
Sbjct: 62 SLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDED 121
Query: 123 AKKLLKRMD--KDGSLEISFNEWRDFLLYCPFSD 154
+++K D +D + + ++ ++ P+ D
Sbjct: 122 VDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYPD 155
Score = 29.0 bits (66), Expect = 0.50
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50
+ Q + F D +G G I +L L G
Sbjct: 75 LMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALG 114
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 63.7 bits (155), Expect = 3e-13
Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 22/155 (14%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSG 69
+ + + K F L +G + + + K +F + S +A+ D+N G
Sbjct: 21 DFTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDG 78
Query: 70 DISLAEFIHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELG--------- 115
I EFI + + E+ L+ FS D + +G I E+ + Q +
Sbjct: 79 TIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKM 138
Query: 116 ---IDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
E +K+ ++MD + ++S E+
Sbjct: 139 PEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA 173
Score = 37.1 bits (86), Expect = 0.001
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL------------- 54
L + + E++L+ F D DGNG I ++ + ++
Sbjct: 87 IALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPE 146
Query: 55 -YAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
+K + D+NR G +SL EFI K +RL
Sbjct: 147 KRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRL 182
Score = 34.4 bits (79), Expect = 0.009
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 72 SLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE-AKKLLKRM 130
L E + + + GF L G + ++E +K + D ++ A+ + +
Sbjct: 15 DLLESTDFTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTF 72
Query: 131 DKDGSLEISFNEWRDFLLYCPFSDIRE 157
D +G I F E+ L + +
Sbjct: 73 DANGDGTIDFREFIIALSVTSRGKLEQ 99
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 60.3 bits (147), Expect = 3e-13
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
F +D N DG + +E++ + +E + + K +D DG+ EI NE+ F
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISLAEFIHY 79
E LF +D +G+G + ++ + Q + D++ +G+I EF +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 80 VK 81
Sbjct: 62 YG 63
Score = 35.6 bits (83), Expect = 7e-04
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK 47
A + K ++E+ L+ +F ++D DGNG+ID ++ +K
Sbjct: 24 AFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Score = 26.4 bits (59), Expect = 1.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 124 KKLLKRMDKDGSLEISFNEWRDFL 147
+ L K +D +G +S+ E + F+
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFV 26
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 63.6 bits (155), Expect = 4e-13
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 29/161 (18%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISL 73
Q RL F ALD + G + DL + + V+ L + +E + S +
Sbjct: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDL-QQIGALAVNPL-GDRIIESFFPDGSQRVDF 80
Query: 74 AEFIH----------------------YVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAF 111
F+ + L F D ++DGKI E+ +
Sbjct: 81 PGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVL 140
Query: 112 QEL-GIDIDENEAKKLLKRM----DKDGSLEISFNEWRDFL 147
+ + G+ + E + + + R D+DG +SF E+ L
Sbjct: 141 RLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSL 181
Score = 37.8 bits (88), Expect = 6e-04
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 5 KCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-------YAQ 57
+ + K + +L F D D +GKI H++ + L+ + A
Sbjct: 99 ETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIAD 158
Query: 58 KFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDG 100
+ ++ +D + G +S EF +++ + ++ L +
Sbjct: 159 RTVQEADEDGDGAVSFVEFTKSLEKMDVEQKMSIRILKHHHHH 201
Score = 32.4 bits (74), Expect = 0.047
Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 31/139 (22%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS------------------ 63
+++ + DG+ ++D + L F + +
Sbjct: 63 GDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQL 122
Query: 64 -DSNRSGDISLAEFIHYVK----------EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
D +R G IS E + ++ + E D++ DG + E K+ +
Sbjct: 123 YDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182
Query: 113 ELGIDIDENEAKKLLKRMD 131
+D+++ + ++LK
Sbjct: 183 --KMDVEQKMSIRILKHHH 199
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 60.6 bits (148), Expect = 1e-12
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEF 76
D+ ++ F D G G+I + L+ G + A+ + +S ++ + +F
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE--ITEIESTLPAEVDMEQF 59
Query: 77 IHYVKEH--------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLK 128
+ + + GF DK+ G I + EL+ LG + E +LLK
Sbjct: 60 LQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK 119
Query: 129 RMDK-DGSLEISFNE 142
+ DG +++++
Sbjct: 120 GVPVKDG--MVNYHD 132
Score = 25.9 bits (58), Expect = 5.6
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG 50
D E K F D D G I + +L L G
Sbjct: 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLG 106
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 61.6 bits (150), Expect = 2e-12
Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISL 73
Q + ++ F +D D +G I +D+ G + L+ + G I+
Sbjct: 51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQE--LDSMVAEAPGPINF 108
Query: 74 AEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLL 127
F+ + E + F+ D+ DGK + L+++ G ++E + L
Sbjct: 109 TMFLTIFGDRIAGTDEEDVIVNAFNLFDEG-DGKCKEETLKRSLTTWGEKFSQDEVDQAL 167
Query: 128 KRMDKDGSLEISFNEW 143
DG+ I ++
Sbjct: 168 SEAPIDGNGLIDIKKF 183
Score = 30.0 bits (68), Expect = 0.26
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 8 AMLKLKLPQED-EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSD 64
+ ++ D E+ + F D +G+GK L ++L +G + L +
Sbjct: 113 TIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAP 171
Query: 65 SNRSGDISLAEFIHYVKEHEK 85
+ +G I + +F + + K
Sbjct: 172 IDGNGLIDIKKFAQILTKGAK 192
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 59.9 bits (146), Expect = 3e-12
Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 19/145 (13%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG-------VHSLYAQKFLERSDS 65
+ + + ++ F+ D G+ KI + + G ++ + +
Sbjct: 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNP---SKEE 57
Query: 66 NRSGDISLAEFIHYV--------KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGID 117
+ I+ EF+ + + + G DK +G + EL+ LG
Sbjct: 58 MNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEK 117
Query: 118 IDENEAKKLLKRMDKDGSLEISFNE 142
+ E E ++L+ + +D + I++
Sbjct: 118 MTEEEVEELM-KGQEDSNGCINYEA 141
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 60.9 bits (148), Expect = 3e-12
Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 28/161 (17%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDIS 72
RL F +LD NG + D + + + + S ++
Sbjct: 22 GFSHSQITRLYSRFTSLDKGENGTLSREDFQRIP--ELAINPLGDRIINAFFSEGEDQVN 79
Query: 73 LAEFIH---------------------YVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAF 111
F+ + L F D ++D KI EL +
Sbjct: 80 FRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVL 139
Query: 112 QEL-GIDIDENE----AKKLLKRMDKDGSLEISFNEWRDFL 147
+ + G++I + + A + ++ D+DG ISF E+ L
Sbjct: 140 RMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Score = 38.2 bits (89), Expect = 5e-04
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-------YAQKFLERSDSNRSGDI 71
+L F D D + KI +L + L+ ++ A + ++ +D + I
Sbjct: 112 SNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAI 171
Query: 72 SLAEFIHYVKEH--EKHLRLGFSHLD 95
S EF+ +++ E+ + + F H
Sbjct: 172 SFTEFVKVLEKVDVEQKMSIRFLHKL 197
Score = 32.8 bits (75), Expect = 0.030
Identities = 13/118 (11%), Positives = 32/118 (27%), Gaps = 28/118 (23%)
Query: 23 EKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS------------------D 64
+++ A ++G +++ + L F + D
Sbjct: 64 DRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYD 123
Query: 65 SNRSGDISLAEFIHYVK----------EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
++ IS E + ++ + D++ D I E K +
Sbjct: 124 LDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLE 181
Score = 29.7 bits (67), Expect = 0.31
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 6 CEAMLKLKLPQED-EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHS 53
M+ + + E ++ D DG+ I + K L+ V
Sbjct: 139 LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQ 187
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 58.6 bits (142), Expect = 4e-12
Identities = 10/70 (14%), Positives = 23/70 (32%)
Query: 73 LAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDK 132
LA V H + F + D + I +E + + + + +L M
Sbjct: 12 LARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPV 71
Query: 133 DGSLEISFNE 142
+ + + +
Sbjct: 72 NAKGRLKYPD 81
Score = 42.9 bits (101), Expect = 4e-06
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 2/67 (2%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQ--KFLERSDSNRSGD 70
K + + F DT I + Q + N G
Sbjct: 17 KAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGR 76
Query: 71 ISLAEFI 77
+ +F+
Sbjct: 77 LKYPDFL 83
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 59.5 bits (144), Expect = 5e-12
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 47 KDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQE 106
K FG+ ++ L + D ++ + E + + D N +G+IDL
Sbjct: 13 KAFGILKARQERRLAEINREFLCDQKYSDE-ENLPEKLTAFKEKYMEFDLNNEGEIDLMS 71
Query: 107 LQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
L++ ++LG+ E KK++ + S IS+ +
Sbjct: 72 LKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRD 107
Score = 40.2 bits (94), Expect = 5e-05
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDI 71
E ++ ++ D + G+ID+ L + ++ GV + +K + S I
Sbjct: 44 NLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTI 103
Query: 72 SLAEFI 77
S +F+
Sbjct: 104 SYRDFV 109
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 61.2 bits (148), Expect = 5e-12
Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 36/170 (21%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL------------YAQKFLE 61
D +++ D D NG I+ +L + + F+
Sbjct: 5 FANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMS 64
Query: 62 RSDSNRSGDISLAEFIHYV----------------KEHEKHLRLGFSHLDKNQDGKIDLQ 105
D+ G + + E + + ++ + D + G I
Sbjct: 65 AYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAA 124
Query: 106 ELQKAFQELGIDID--------ENEAKKLLKRMDKDGSLEISFNEWRDFL 147
EL+ ++L + + ++K DK+ + N+ L
Sbjct: 125 ELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARIL 174
Score = 58.9 bits (142), Expect = 4e-11
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 35/163 (21%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL----------YAQKFLERSD 64
P ++ K++ D D +G I +L LKD + Y ++ D
Sbjct: 99 PLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFD 158
Query: 65 SNRSGDISLAEFIHYVK-----------------EHEKHLRLGFSHLDKNQDGKIDLQEL 107
N+ G + L + + E ++ F+H D ++ G ++ E+
Sbjct: 159 KNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEV 218
Query: 108 QKAFQELG----IDIDENEAKKLLKRM----DKDGSLEISFNE 142
+++ I + K + + D + +I +E
Sbjct: 219 DGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSE 261
Score = 42.4 bits (99), Expect = 2e-05
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 10/78 (12%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEA----------KKLLKRM 130
+ H D + +G I+ +EL F+ + + + K +
Sbjct: 7 NLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAY 66
Query: 131 DKDGSLEISFNEWRDFLL 148
D + E + +L
Sbjct: 67 DATFDGRLQIEELANMIL 84
Score = 37.7 bits (87), Expect = 8e-04
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 21/93 (22%)
Query: 17 EDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEF 76
E + EK+F D G ++ ++ +KD E + SG
Sbjct: 193 ERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMM----------ELVRPSISGG------ 236
Query: 77 IHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQK 109
+ +K +H D N+DGKI EL
Sbjct: 237 -----DLDKFRECLLTHCDMNKDGKIQKSELAL 264
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 58.4 bits (141), Expect = 1e-11
Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 61 ERSDSNRSGDISLAEF--IHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDI 118
ER + + ++ + + ++ + D N +G ID+ L++ ++LG+
Sbjct: 22 ERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPK 81
Query: 119 DENEAKKLLKRMDKDGSLEISFNE 142
E K+L++ + S+++
Sbjct: 82 THLELKRLIREVSSGSEETFSYSD 105
Score = 39.5 bits (92), Expect = 1e-04
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
+ E + ++ D +GNG IDI L + L+ GV + ++ + S
Sbjct: 41 EDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEET 100
Query: 71 ISLAEFIHYVK 81
S ++F+ +
Sbjct: 101 FSYSDFLRMML 111
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 58.4 bits (142), Expect = 2e-11
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 15/156 (9%)
Query: 13 KLPQEDEERLEKLFVALDT--DGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRS 68
+L +++ E + ++F D +G +D + L+ G++ A + +
Sbjct: 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGG-TKKMGE 60
Query: 69 GDISLAEFIHYVKEHEKH--------LRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120
L E + +E F D+ G I E++ + LG I E
Sbjct: 61 KAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITE 120
Query: 121 NEAKKLLKRMD--KDGSLEISFNEWRDFLLYCPFSD 154
++ + D +D I + + ++ PF D
Sbjct: 121 DQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPFPD 156
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 55.6 bits (135), Expect = 3e-11
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 66 NRSGDISLAEFI---HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE 122
+ SG I + +E L+ F +D + G I EL+ + +G ++ E+E
Sbjct: 1 HSSGHIDDDDKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE 60
Query: 123 AKKLLKRMDKDGSLEISFNE 142
K L+ D D S I + E
Sbjct: 61 IKDLMDAADIDKSGTIDYGE 80
Score = 44.4 bits (106), Expect = 5e-07
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSD 64
+ + +L +E+ L++LF +DTD +G I +L LK G + + + ++ +D
Sbjct: 10 DKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAAD 69
Query: 65 SNRSGDISLAEFI 77
++SG I EFI
Sbjct: 70 IDKSGTIDYGEFI 82
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 58.3 bits (141), Expect = 3e-11
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 22/148 (14%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSGDISLAEF 76
++ K F +G ++ + K K F S +A+ D++++G I EF
Sbjct: 28 QQWYKGF--FKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEF 85
Query: 77 IHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ------------ELGIDID 119
I + E L F D + +G I E+ + D
Sbjct: 86 ICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTP 145
Query: 120 ENEAKKLLKRMDKDGSLEISFNEWRDFL 147
E K+ MDK+ +++ E+ +
Sbjct: 146 EKRVNKIFNMMDKNKDGQLTLEEFCEGS 173
Score = 37.5 bits (87), Expect = 8e-04
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 14/96 (14%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK--------------DFGVHS 53
L + E ++L F D D NG I ++ + + D
Sbjct: 87 CALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPE 146
Query: 54 LYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
K D N+ G ++L EF K +
Sbjct: 147 KRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSA 182
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 56.1 bits (136), Expect = 3e-11
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 68 SGDISLAEFIHYV---KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI---DIDEN 121
+ + F V + ++ F LD+++ G I+ +ELQ + +
Sbjct: 22 ADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSA 81
Query: 122 EAKKLLKRMDKDGSLEISFNEW 143
E K L D DG +I E+
Sbjct: 82 ETKAFLAAGDTDGDGKIGVEEF 103
Score = 41.5 bits (98), Expect = 1e-05
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-----AQKFLERSDS 65
+ L + ++++K+F LD D +G I+ +L LK+F + + FL D+
Sbjct: 33 TVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDT 92
Query: 66 NRSGDISLAEFIHYVK 81
+ G I + EF VK
Sbjct: 93 DGDGKIGVEEFQSLVK 108
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 54.8 bits (133), Expect = 4e-11
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 87 LRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
+ F DKN+DGK+ L E ++ + + K + +D DG+ E++ +E
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADE 58
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISLAEFIHY 79
+++F D + +GK+ + + + F + KF E D + +G+++ EF
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Query: 80 VK 81
++
Sbjct: 63 IE 64
Score = 25.9 bits (58), Expect = 1.9
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKID 38
E L E+ + K F +D DGNG+++
Sbjct: 25 EVALAFSPYFTQED-IVKFFEEIDVDGNGELN 55
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 57.6 bits (139), Expect = 7e-11
Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 22/148 (14%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSGDISLAEF 76
+ L + F +G ++ + F + YA D++ +G +S +F
Sbjct: 67 QILYRGFKNEC--PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDF 124
Query: 77 IHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ------------ELGIDID 119
I + ++ L F+ D N+DG I +E+ + L D
Sbjct: 125 IKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAP 184
Query: 120 ENEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ ++MDK+ ++ +E+ +
Sbjct: 185 RQHVETFFQKMDKNKDGVVTIDEFIESC 212
Score = 37.9 bits (88), Expect = 6e-04
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK--------------DFGVHS 53
L + L +E+L F D + +G I ++ +K
Sbjct: 126 KGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPR 185
Query: 54 LYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
+ + F ++ D N+ G +++ EFI ++ E +R
Sbjct: 186 QHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRS 221
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 54.7 bits (132), Expect = 9e-11
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
E LR F+ D N+ G+++ +E + EL + +A+ + +R+D D I+F
Sbjct: 23 GEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITF 80
Query: 141 NEW 143
E+
Sbjct: 81 QEF 83
Score = 54.3 bits (131), Expect = 1e-10
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAE 75
E+ RL +F A D + +G+++ + + V A+ +R D++R G I+ E
Sbjct: 23 GEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQE 82
Query: 76 FI 77
F
Sbjct: 83 FA 84
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 55.3 bits (134), Expect = 9e-11
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 57 QKFLERSDSNRSGDISLAEFI---HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE 113
L + EF + ++ F +D+++ G I+ EL+ Q
Sbjct: 12 AAALAACSAA--DSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQN 69
Query: 114 LGI---DIDENEAKKLLKRMDKDGSLEISFNE 142
+ + E K L DKDG I +E
Sbjct: 70 FSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
Score = 37.5 bits (88), Expect = 3e-04
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-----YAQKFLERSDSNRS 68
L + + ++K F +D D +G I+ +L L++F + + FL D +
Sbjct: 35 LASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGD 94
Query: 69 GDISLAEFIHYVK 81
G I + EF +K
Sbjct: 95 GMIGVDEFAAMIK 107
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 54.1 bits (131), Expect = 1e-10
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
+ F D N DGKI L EL A + LG +E ++++ +D DG I FNE
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDGDGFIDFNE 59
Score = 37.5 bits (88), Expect = 2e-04
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-YAQKFLERSDSNRSGDISLAEFI 77
+ +E++F DT+G+GKI + +L+ AL+ G S Q+ + D++ G I EFI
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFI 61
Score = 25.2 bits (56), Expect = 4.0
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKID 38
+A+ L DE ++++ +DTDG+G ID
Sbjct: 27 DALRTLGSTSADE--VQRMMAEIDTDGDGFID 56
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 55.4 bits (134), Expect = 1e-10
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 57 QKFLERSDSNRSGDISLAEFIHYVKEH------EKHLRLGFSHLDKNQDGKIDLQELQKA 110
+ L + S + + + + E L GFS L + I + L++
Sbjct: 6 KSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRN 65
Query: 111 FQELGI-DIDENEAKKLLKRMDKDGSLEISFNE 142
LGI + + +A+ +++ D DG ++ E
Sbjct: 66 SGILGIEGMSKEDAQGMVREGDLDGDGALNQTE 98
Score = 36.5 bits (85), Expect = 8e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL---YAQKFLER 62
M + +E L K F L I L + G+ + AQ +
Sbjct: 26 LPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVRE 85
Query: 63 SDSNRSGDISLAEFI 77
D + G ++ EF
Sbjct: 86 GDLDGDGALNQTEFC 100
Score = 26.1 bits (58), Expect = 4.5
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 120 ENEAKKLLKRMDKDGSLEISFNE 142
E K +L +E + +
Sbjct: 2 EPTEKSMLLETTSTTKMETKYED 24
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 54.6 bits (132), Expect = 2e-10
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 57 QKFLERSDSNRSGDISLAEFIHYV---KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE 113
L+ ++ + F V + ++ F +D+++ G I+ EL+ Q
Sbjct: 13 AAALKACEAA--DSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQV 70
Query: 114 L---GIDIDENEAKKLLKRMDKDGSLEISFNEW 143
+ + E K LK D DG I +EW
Sbjct: 71 FSAGARALTDAETKAFLKAGDSDGDGAIGVDEW 103
Score = 39.2 bits (92), Expect = 7e-05
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG-----VHSLYAQKFLERSDS 65
K+ L + + ++K F +D D +G I+ +L L+ F + + FL+ DS
Sbjct: 33 KVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDS 92
Query: 66 NRSGDISLAEFIHYVK 81
+ G I + E+ VK
Sbjct: 93 DGDGAIGVDEWAALVK 108
Score = 26.1 bits (58), Expect = 4.0
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 99 DGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ + ++ KK +D+D S I +E + FL
Sbjct: 22 ADSFNYKAFFAKVGLTAKS--ADDIKKAFFVIDQDKSGFIEEDELKLFL 68
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 56.0 bits (135), Expect = 2e-10
Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 22/148 (14%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDF---GVHSLYAQKFLERSDSNRSGDISLAEF 76
++ K F+ +G++D K K F G + +A D N+ G I +EF
Sbjct: 28 QQWYKGFIKDC--PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEF 85
Query: 77 IHYVK-----EHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ------------ELGIDID 119
I + ++ LR F D + DG I E+ +
Sbjct: 86 IQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTP 145
Query: 120 ENEAKKLLKRMDKDGSLEISFNEWRDFL 147
E ++ MDK+ +++ E+++
Sbjct: 146 EKRVDRIFAMMDKNADGKLTLQEFQEGS 173
Score = 38.7 bits (90), Expect = 3e-04
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK--------------DFGVHSL 54
L + +E+L F D D +G I +++ + +
Sbjct: 88 ALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEK 147
Query: 55 YAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
+ D N G ++L EF K ++
Sbjct: 148 RVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQA 182
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 54.1 bits (131), Expect = 2e-10
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 57 QKFLERSDSNRSGDISLAEFIHYV---KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE 113
+K L+ + G + +F V ++ F +D + G I+ +EL+ +
Sbjct: 13 KKALDAVKAE--GSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKS 70
Query: 114 L---GIDIDENEAKKLLKRMDKDGSLEISFNEW 143
G D+ + E K LK DKDG +I +E+
Sbjct: 71 FAADGRDLTDAETKAFLKAADKDGDGKIGIDEF 103
Score = 40.6 bits (96), Expect = 2e-05
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-----YAQKFLER 62
A++ LK ++ ++K+F A+D D +G I+ +L LK F + FL+
Sbjct: 32 ALVGLKAMSAND--VKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKA 89
Query: 63 SDSNRSGDISLAEFIHYVKE 82
+D + G I + EF V E
Sbjct: 90 ADKDGDGKIGIDEFETLVHE 109
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 53.8 bits (130), Expect = 2e-10
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
+ E+ L+ F DK+Q+G I EL+ LG + + E ++++K D DG ++++
Sbjct: 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNY 64
Query: 141 NE 142
E
Sbjct: 65 EE 66
Score = 35.3 bits (82), Expect = 0.002
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDI 71
+ + EE L++ F D D NG I +L + + G ++ ++ +D + G +
Sbjct: 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQV 62
Query: 72 SLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAF 111
+ EF+ + G L++ F
Sbjct: 63 NYEEFVKMMMTVRGG------------GGGNGWSRLRRKF 90
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 53.3 bits (129), Expect = 2e-10
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
+E ++ ++ F D N+ G ID EL+ A + LG D+ + E +L+ D++G+ I F
Sbjct: 3 EEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGF 62
Query: 141 NE 142
++
Sbjct: 63 DD 64
Score = 36.3 bits (85), Expect = 5e-04
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDI 71
L +E ++ +++ F DT+ G ID H+L A++ G + + D +G I
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYI 60
Query: 72 SLAEFI 77
+F+
Sbjct: 61 GFDDFL 66
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 53.4 bits (129), Expect = 2e-10
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
E ++ + F DK+ D K+ +EL + LG + + + +++K DKD S +
Sbjct: 10 AEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQ 69
Query: 141 NE 142
Sbjct: 70 ET 71
Score = 39.2 bits (92), Expect = 6e-05
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDS 65
+ K L E+++ ++ F D D + K+ +L ++ G + + ++ D
Sbjct: 2 SEQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDK 61
Query: 66 NRSGDISLAEFI 77
+ SG F+
Sbjct: 62 DNSGKFDQETFL 73
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 52.9 bits (128), Expect = 2e-10
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
+ + L++ F D++ DG I + EL++A LG + + E +++ D D +++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 141 NE 142
E
Sbjct: 62 EE 63
Score = 31.7 bits (73), Expect = 0.017
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGDISL 73
+ E L+ F A D DG+G I + +L +A+ G + +D ++ G ++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 74 AEFI 77
EF
Sbjct: 62 EEFA 65
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 53.0 bits (128), Expect = 3e-10
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
+ F D N DGKI EL A + LG + +E ++++ +D DG ISF
Sbjct: 7 PQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISF 65
Query: 141 NE 142
+E
Sbjct: 66 DE 67
Score = 41.1 bits (97), Expect = 1e-05
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-AQKFLERSDSNRSGDI 71
+ +D E++F DT+G+GKI +L ALK G + ++ + D++ G I
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFI 63
Query: 72 SLAEFI 77
S EF
Sbjct: 64 SFDEFT 69
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 55.2 bits (133), Expect = 3e-10
Identities = 24/147 (16%), Positives = 56/147 (38%), Gaps = 22/147 (14%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSGDISLAEF 76
+ L + F + +G ++ + F H S YA D+ ++G + +F
Sbjct: 21 QVLYRGF--KNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDF 78
Query: 77 IHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE--------- 122
+ + + LR F+ D N+DG I+ +E+ + + + +
Sbjct: 79 VTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTP 138
Query: 123 ---AKKLLKRMDKDGSLEISFNEWRDF 146
++MDK+ ++ +E+ +
Sbjct: 139 RQHVDVFFQKMDKNKDGIVTLDEFLES 165
Score = 37.1 bits (86), Expect = 0.001
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 16/97 (16%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDL---------------SKALKDFGVH 52
L + L E+L F D + +G I+ ++ LK+
Sbjct: 80 TALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPR 139
Query: 53 SLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
F ++ D N+ G ++L EF+ +E + +R
Sbjct: 140 QH-VDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRS 175
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 56.5 bits (137), Expect = 4e-10
Identities = 19/151 (12%), Positives = 35/151 (23%), Gaps = 29/151 (19%)
Query: 8 AMLKLK------------LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY 55
A KLK +E ++ ++ NG D +K
Sbjct: 295 ARRKLKGAILTVMLATRNFSVRKQEIIKVTEQLIEAISNG--DFESYTKMCDPGM----- 347
Query: 56 AQKFLERSDSNRSGDISLAEFI------HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQK 109
F + N + F K + HL ++ I + +
Sbjct: 348 -TAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQ 406
Query: 110 AFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
G A+ R+ +
Sbjct: 407 YLDAGG---IPRTAQSEETRVWHRRDGKWQI 434
Score = 41.9 bits (99), Expect = 4e-05
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNR 67
L + + + + L D + I +++ L G+ AQ R R
Sbjct: 370 ENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRT-AQSEETRVWHRR 428
Query: 68 SGDISLAEF 76
G + F
Sbjct: 429 DGKWQIVHF 437
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 53.3 bits (129), Expect = 4e-10
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 57 QKFLERSDSNRSGDISLAEFIHYV---KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE 113
K + G F H V + + ++ F LDK+Q G I+ +EL+ +
Sbjct: 12 NKAISAFKDP--GTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKG 69
Query: 114 L---GIDIDENEAKKLLKRMDKDGSLEISFNEW 143
G D+++ E K LL D D +I +E+
Sbjct: 70 FSAHGRDLNDTETKALLAAGDSDHDGKIGADEF 102
Score = 35.6 bits (83), Expect = 0.001
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL-----YAQKFLERSDSNRSGDISL 73
+ +++++F LD D +G I+ +L LK F H + L DS+ G I
Sbjct: 40 DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGA 99
Query: 74 AEFIHYVKE 82
EF V +
Sbjct: 100 DEFAKMVAQ 108
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 52.6 bits (127), Expect = 4e-10
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGID-IDENEAKKLLKRMDKDGSLEIS 139
++ E+ + F D N DG ID E + Q++G + + + E ++ +K D+DG+ I
Sbjct: 4 QDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID 63
Query: 140 FNE 142
E
Sbjct: 64 IPE 66
Score = 41.0 bits (97), Expect = 8e-06
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL---YAQKFLERSDSNRSGD 70
+ Q+DEE + + F D +G+G ID + ++ G L ++ ++ +D + +G
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGV 61
Query: 71 ISLAEFIH 78
I + EF+
Sbjct: 62 IDIPEFMD 69
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 55.4 bits (133), Expect = 4e-10
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 24/151 (15%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSGDISLAEF 76
+ F L G+I F YAQ DSN G + E+
Sbjct: 36 CSWYQSF--LKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEY 93
Query: 77 IHYVKEH-----EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE--------- 122
+ + + L FS D + +G I E+ + + I +
Sbjct: 94 VIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDEN 153
Query: 123 -----AKKLLKRMDKDGSLEISFNEWRDFLL 148
A+K+ K K+ +++ E+ + L
Sbjct: 154 TPEKRAEKIWKYFGKNDDDKLTEKEFIEGTL 184
Score = 36.1 bits (83), Expect = 0.002
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 6 CEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL----------- 54
L + + ++LE F D DGNG I +++ + +
Sbjct: 93 YVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDE 152
Query: 55 -----YAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
A+K + N ++ EFI +++ LRL
Sbjct: 153 NTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRL 192
Score = 35.7 bits (82), Expect = 0.004
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 72 SLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE-AKKLLKRM 130
L + +E F L G+I Q+ Q + + D D A+ + +
Sbjct: 23 ELQLNTKFSEEELCSWYQSF--LKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSF 80
Query: 131 DKDGSLEISFNEWRDFLLYCPFSDIREQ 158
D + + F E+ L ++
Sbjct: 81 DSNLDGTLDFKEYVIALHMTTAGKTNQK 108
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 53.1 bits (128), Expect = 5e-10
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
+ + + D N +G ID+ L++ ++LG+ E KKL+ + S+
Sbjct: 28 PSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSY 87
Query: 141 NE 142
+
Sbjct: 88 PD 89
Score = 37.3 bits (87), Expect = 4e-04
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSDSNRSGD 70
+ E ++ ++ D +GNG IDI L + L+ GV + +K + S
Sbjct: 25 EDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGET 84
Query: 71 ISLAEFI 77
S +F+
Sbjct: 85 FSYPDFL 91
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 52.2 bits (126), Expect = 7e-10
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
+E + F D + G I +EL + LG + + E +++ +D+DGS I F
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
Query: 141 NE 142
E
Sbjct: 76 EE 77
Score = 38.4 bits (90), Expect = 9e-05
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYA--QKFLERSD 64
+A + L +E + F D DG G I +L ++ G + +E D
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVD 66
Query: 65 SNRSGDISLAEFI 77
+ SG I EF+
Sbjct: 67 EDGSGTIDFEEFL 79
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 54.7 bits (131), Expect = 1e-09
Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 22/155 (14%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDF---GVHSLYAQKFLERSDSNRSG 69
K +++ + L + F G +D F G + YA D++ +G
Sbjct: 87 KFTKKELQSLYRGFKNEC--PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNG 144
Query: 70 DISLAEFIHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ------------ 112
I +F+ + + L+ F+ D N+DG I +E+ +
Sbjct: 145 AIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYP 204
Query: 113 ELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
L D ++ ++MD++ ++ +E+ +
Sbjct: 205 ILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETC 239
Score = 39.3 bits (91), Expect = 2e-04
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK--------------DFGVHS 53
L + L E+L+ F D + +G I ++ +K
Sbjct: 153 VGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPL 212
Query: 54 LYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
+ ++F ++ D N+ G +++ EF+ ++ E +
Sbjct: 213 EHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNS 248
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 50.4 bits (121), Expect = 4e-09
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 70 DISLAEFIHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
S E +++ + E+ +R F DK+ +G I EL+ LG + + E
Sbjct: 9 HGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVD 68
Query: 125 KLLKRMDKDGSLEISFNE 142
++++ D DG ++++ E
Sbjct: 69 EMIREADIDGDGQVNYEE 86
Score = 33.0 bits (76), Expect = 0.009
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFG--VHSLYAQKFLERSD 64
L + EE + + F D DGNG I +L + + G + + + +D
Sbjct: 16 LYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREAD 75
Query: 65 SNRSGDISLAEFIH 78
+ G ++ EF+
Sbjct: 76 IDGDGQVNYEEFVQ 89
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 52.2 bits (125), Expect = 5e-09
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSGDISLAEF 76
++ K F L +G++ D K K F +A D + +G I EF
Sbjct: 28 QQWHKGF--LRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEF 85
Query: 77 IHYVK-----EHEKHLRLGFSHLDKNQDGKIDLQEL----QKAFQELGIDIDENE----- 122
I + E+ L F D N DG I E+ ++ +G + NE
Sbjct: 86 ITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATP 145
Query: 123 ---AKKLLKRMDKDGSLEISFNEWRDFL 147
KK+ K MDK+ I+ +E+R+
Sbjct: 146 EMRVKKIFKLMDKNEDGYITLDEFREGS 173
Score = 39.5 bits (92), Expect = 2e-04
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK--------------DFGVHS 53
+L EE+L F D + +G I ++ + D
Sbjct: 87 TVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPE 146
Query: 54 LYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
+ +K + D N G I+L EF K +
Sbjct: 147 MRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGA 182
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 50.4 bits (121), Expect = 5e-09
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 69 GDISLAEFIHYV---KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI---DIDENE 122
+F K ++ F +D +Q G +D EL+ Q+ ++ E+E
Sbjct: 22 DTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESE 81
Query: 123 AKKLLKRMDKDGSLEISFNEW 143
K L+ D DG +I +E+
Sbjct: 82 TKSLMDAADNDGDGKIGADEF 102
Score = 45.7 bits (109), Expect = 3e-07
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 11 KLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-----AQKFLERSDS 65
L + +++ +F +D D +G +D +L L+ F + + ++ +D+
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN 91
Query: 66 NRSGDISLAEFIHYVK 81
+ G I EF V
Sbjct: 92 DGDGKIGADEFQEMVH 107
Score = 26.1 bits (58), Expect = 3.1
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 99 DGKIDLQELQKAFQELGIDIDE-NEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ Q+ FQ G+ ++ K + + +D D S + +E + FL
Sbjct: 21 PDTFEPQKF---FQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFL 67
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 53.2 bits (127), Expect = 6e-09
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 15 PQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGV--HSLYAQKF-LE--RS-----D 64
E+E + KLFV L + ++ +L L L F ++ RS D
Sbjct: 726 ESEEERQFRKLFVQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMD 784
Query: 65 SNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAK 124
S+ +G + EF Y+ + K + + + ++ G I EL AF+ G ++++
Sbjct: 785 SDTTGKLGFEEF-KYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYS 843
Query: 125 KLLKRMDKDGSLEISFNEWRDFLLYC 150
+++R D + + F+ +F+
Sbjct: 844 MIIRRYS-DETGNMDFD---NFISCL 865
Score = 42.8 bits (100), Expect = 2e-05
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 64 DSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEA 123
D + +G + L EF + + ++ F D ++ G + E++ A + G +
Sbjct: 587 DRDGNGKLGLVEF-NILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLH 645
Query: 124 KKLLKRMDKDGSLEISFNEWRDFLLYC 150
+ ++ R D L I F+ +F+
Sbjct: 646 QVIVARFA-DDELIIDFD---NFVRCL 668
Score = 42.1 bits (98), Expect = 4e-05
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Query: 24 KLFVALDTDGNGKIDIHDLSKALKDFG------VHSLYAQKFLERSDSNRSGDISLAEFI 77
++ +TD +G I ++L A + G ++S+ +++ S+ +G++ FI
Sbjct: 808 GIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRY-----SDETGNMDFDNFI 862
Query: 78 HYVKEHEKHLRLG-----FSHLDKNQDGKIDLQELQ 108
+ +RL F LDKN G+I + +
Sbjct: 863 SCL------VRLDAMFRAFRSLDKNGTGQIQVNIQE 892
Score = 38.2 bits (88), Expect = 8e-04
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 23 EKLFVALDTDGNGKIDIHDLSKALKDFGVH-SLYAQKFLERSDSNRSGDISLAEFIHYVK 81
+F D D +G + +++ A++ G + + ++ I F+ +
Sbjct: 610 LTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLV 669
Query: 82 EHEKHLRLGFSHLDKNQDGKIDLQ 105
E ++ F LD G I L
Sbjct: 670 RLEILFKI-FKQLDPENTGTIQLD 692
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 51.1 bits (122), Expect = 2e-08
Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 22/148 (14%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVH---SLYAQKFLERSDSNRSGDISLAEF 76
+ L + F +G ++ + F H S YA D+ ++G + +F
Sbjct: 54 QVLYRGFKNEC--PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDF 111
Query: 77 IHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENE--------- 122
+ + + LR F+ D N+DG I+ +E+ + + + +
Sbjct: 112 VTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTP 171
Query: 123 ---AKKLLKRMDKDGSLEISFNEWRDFL 147
++MDK+ ++ +E+ +
Sbjct: 172 RQHVDVFFQKMDKNKDGIVTLDEFLESC 199
Score = 38.8 bits (90), Expect = 3e-04
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 8 AMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK--------------DFGVHS 53
L + L E+L F D + +G I+ ++ +K
Sbjct: 113 TALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPR 172
Query: 54 LYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRL 89
+ F ++ D N+ G ++L EF+ +E + +R
Sbjct: 173 QHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRS 208
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 48.4 bits (116), Expect = 2e-08
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI------DIDENEAKKLLKRMDKDG 134
+ + L F LD N DG + ELQ L D + + KL+K DK+
Sbjct: 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNS 62
Query: 135 SLEISFNE 142
+IS E
Sbjct: 63 DGKISKEE 70
Score = 38.0 bits (89), Expect = 1e-04
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERS--------DS 65
+ + + LE F LD +G+G + +L + + ++ ++ + D
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 66 NRSGDISLAEFIH 78
N G IS EF++
Sbjct: 61 NSDGKISKEEFLN 73
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 48.4 bits (116), Expect = 3e-08
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 69 GDISLAEFIHYV---KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGI---DIDENE 122
+F V K+ ++ F LDK++ G I+ EL + D+ E
Sbjct: 22 DSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKE 81
Query: 123 AKKLLKRMDKDGSLEISFNEW 143
K L+ DKDG +I E+
Sbjct: 82 TKTLMAAGDKDGDGKIGVEEF 102
Score = 42.3 bits (100), Expect = 6e-06
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 3 TLKCEAMLKL-KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-----A 56
+ + ++ L ++ + ++K+F LD D +G I+ +L LK F +
Sbjct: 23 SFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKET 82
Query: 57 QKFLERSDSNRSGDISLAEFIHYVKE 82
+ + D + G I + EF V E
Sbjct: 83 KTLMAAGDKDGDGKIGVEEFSTLVAE 108
Score = 26.9 bits (60), Expect = 1.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 99 DGKIDLQELQKAFQELGIDIDE-NEAKKLLKRMDKDGSLEISFNEWRDFL 147
D ++ FQ +G+ ++ KK+ +DKD S I +E L
Sbjct: 21 ADSFDHKKF---FQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSIL 67
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 48.0 bits (115), Expect = 5e-08
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGID---IDENEAKKLLKRMDKDGSLE 137
K+ L+ F LD +Q G I+ EL+ Q + +E K L D DG +
Sbjct: 37 KKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGK 96
Query: 138 ISFNE 142
I E
Sbjct: 97 IGAEE 101
Score = 42.3 bits (100), Expect = 5e-06
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 3 TLKCEAMLKL-KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-----A 56
+ + ++ + ++ +L+++F LD D +G I+ +L L+ F +
Sbjct: 23 SFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASET 82
Query: 57 QKFLERSDSNRSGDISLAEFIHYVK 81
+ FL +D + G I EF V+
Sbjct: 83 KTFLAAADHDGDGKIGAEEFQEMVQ 107
Score = 25.7 bits (57), Expect = 4.5
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 99 DGKIDLQELQKAFQELGIDIDE-NEAKKLLKRMDKDGSLEISFNEWRDFL 147
++ FQ G+ ++ K++ + +D D S I +E + FL
Sbjct: 21 PDSFSPKKF---FQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFL 67
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 46.6 bits (111), Expect = 9e-08
Identities = 15/65 (23%), Positives = 24/65 (36%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDIS 72
K+ E + F + D NG I + + L E SD ++ G ++
Sbjct: 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALT 61
Query: 73 LAEFI 77
L EF
Sbjct: 62 LDEFC 66
Score = 32.4 bits (74), Expect = 0.017
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
F + + +G I ++ F + + I E L DKDG+L + +E+
Sbjct: 15 FKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGAL--TLDEF 65
Score = 27.4 bits (61), Expect = 0.90
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK 47
E K KLP + L ++ D D +G + + + A
Sbjct: 33 EFFTKSKLPILE---LSHIWELSDFDKDGALTLDEFCAAFH 70
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 49.5 bits (117), Expect = 1e-07
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 87 LRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDF 146
+ DKN+D K++ +EL+ +EL I +D+ A+K+ + D + + E F
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 147 L-LYCPFSDIRE 157
+ ++I
Sbjct: 73 YKMLTQRAEIDR 84
Score = 39.1 bits (90), Expect = 3e-04
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 22 LEKLFVALDTDGNGKIDIHDLSKALK--DFGVHSLYAQKFLERSDSNRSGDISLAEFIHY 79
+ D + + K++ +L LK + V YA+K D +++ + E +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 80 VKE--HEKHLRLGFSHLDKNQDGKIDLQELQKAFQE 113
K + F + ++ L Q
Sbjct: 73 YKMLTQRAEIDRAFEEA-AGSAETLSVERLVTFLQH 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 3e-07
Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 82/198 (41%)
Query: 19 EERLEKLFVALDTD---GNGKIDIHDLSKAL---------KDFGVHSLY--AQKFLERSD 64
++ L + GN DIH L+ L K + Y A+ +R
Sbjct: 81 DQVLNLCLTEFENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 65 SNRS----------GDISL-AEF------IHYVKEHEKHLRLGFSHLDKNQDGKIDLQEL 107
+S G+ L A F Y +E L++L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE---------------------LRDL 176
Query: 108 QKAFQELGIDIDENEAKKLLKRMDKDGSLE------ISFNEW---------RDFLLYCPF 152
+ + L D+ + A+ L + + E ++ EW +D+LL P
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 153 SDIREQNVSAQKTWKLIF 170
S LI
Sbjct: 237 S------------CPLIG 242
Score = 30.8 bits (69), Expect = 0.21
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 44/151 (29%)
Query: 46 LKDFGVHSLYAQKFLERSDSNRSGDISL-AEFIHYV---------KEHEKHLRLGFSH-- 93
L++ L +D + L +F+ YV + ++ L L +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 94 ---------------LDKNQDGKID-LQELQKAF----QELGIDIDENEAKKLLKRMDKD 133
L + D + +EL K + D+ L + + +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 134 -----------GSLEISFNEWRD-FLLYCPF 152
G+ + F E RD + Y
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Score = 26.6 bits (58), Expect = 5.3
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 21/49 (42%)
Query: 68 SGDIS----LAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
+GD+ + ++++K KID+ ELQK+
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQ-----------------KIDIIELQKSLS 1887
Score = 26.6 bits (58), Expect = 6.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 18 DEERLEKLFVALDTDGNGKIDIHDLSKAL 46
D L+ + L+ KIDI +L K+L
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQKSL 1886
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 44.7 bits (106), Expect = 6e-07
Identities = 10/64 (15%), Positives = 27/64 (42%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISL 73
+ ++ + +++F+ D D +G + ++ + G+ S D+ G +S
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSK 63
Query: 74 AEFI 77
+F
Sbjct: 64 DQFA 67
Score = 33.9 bits (78), Expect = 0.005
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
F DK+ DG + E+++ F + G + + D ++S +++
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKDQF 66
Score = 27.7 bits (62), Expect = 0.73
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK 47
E LK LP L ++ DT GK+ + A
Sbjct: 34 EIFLKTGLPSTL---LAHIWSLCDTKDCGKLSKDQFALAFH 71
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 46.4 bits (110), Expect = 7e-07
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKD--FGVHSLYAQKFLER-----SDSNRSGDIS 72
+ F L ++ ++ + + L A F ER S S +S
Sbjct: 51 LLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLS 110
Query: 73 LAEFI------HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-----GIDIDEN 121
+F+ + F D + DG ++ ++L + L + +
Sbjct: 111 FEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSAS 170
Query: 122 E----AKKLLKRMDKDGSLEISFNEWRDFLLYCP 151
E +L+ D D I+ +E++ + P
Sbjct: 171 EMKQLIDNILEESDIDRDGTINLSEFQHVISRSP 204
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-----------AQKFLERSDSNR 67
+ + F D D +G ++ DLS+ + LE SD +R
Sbjct: 128 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 187
Query: 68 SGDISLAEFIHYVKEHE 84
G I+L+EF H +
Sbjct: 188 DGTINLSEFQHVISRSP 204
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 44.4 bits (105), Expect = 1e-06
Identities = 13/64 (20%), Positives = 24/64 (37%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISL 73
+PQ + +LF + D +G + L + SD ++ G ++
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTA 67
Query: 74 AEFI 77
EFI
Sbjct: 68 EEFI 71
Score = 32.4 bits (74), Expect = 0.019
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
F+ DK G + + + + + + + D D +++ E+
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQSSLPQAQLA--SIWNLSDIDQDGKLTAEEF 70
Score = 25.9 bits (57), Expect = 3.8
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK 47
+++ LPQ L ++ D D +GK+ + A+
Sbjct: 38 TILMQSSLPQAQ---LASIWNLSDIDQDGKLTAEEFILAMH 75
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 44.8 bits (106), Expect = 2e-06
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 22/150 (14%)
Query: 20 ERLEKLFVALDTDGNGKID-IHDLSKALKDFGVH-SLYAQKFLER-----SDSNRSGDIS 72
+ F L ++ + L A F ER S S +S
Sbjct: 20 LLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLS 79
Query: 73 LAEFI------HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL-----GIDIDEN 121
+F+ + F D + DG ++ ++L + L + +
Sbjct: 80 FEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSAS 139
Query: 122 E----AKKLLKRMDKDGSLEISFNEWRDFL 147
E +L+ D D I+ +E++ +
Sbjct: 140 EMKQLIDNILEESDIDRDGTINLSEFQHVI 169
Score = 37.4 bits (87), Expect = 7e-04
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLY-----------AQKFLERSDSNR 67
+ + F D D +G ++ DLS+ + LE SD +R
Sbjct: 97 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
Query: 68 SGDISLAEFIHYVKEHE 84
G I+L+EF H +
Sbjct: 157 DGTINLSEFQHVISRSP 173
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 43.2 bits (102), Expect = 3e-06
Identities = 13/65 (20%), Positives = 23/65 (35%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDIS 72
++ +E E F +L D + I + E SD++ G ++
Sbjct: 15 RITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALT 74
Query: 73 LAEFI 77
L EF
Sbjct: 75 LPEFC 79
Score = 31.6 bits (72), Expect = 0.042
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
F L + I + F + + I E L D DG+L + E+
Sbjct: 28 FRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGAL--TLPEF 78
Score = 27.4 bits (61), Expect = 1.1
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK 47
K KL + L ++ D D +G + + + A
Sbjct: 46 NFFTKSKLSIPE---LSYIWELSDADCDGALTLPEFCAAFH 83
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 43.0 bits (101), Expect = 8e-06
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 14/136 (10%)
Query: 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKF--------LERSDSNRSG 69
L ID L L + F + + +G
Sbjct: 3 SSHHHHHHSSGL-VPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNG 61
Query: 70 DISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKR 129
+ EF K H + F + + G + +L KA + +++LL
Sbjct: 62 RLDQEEFARLWK-RLVHYQHVFQKVQTSP-GVLLSSDLWKAIENTDFLRGIFISRELLHL 119
Query: 130 MDK---DGSLEISFNE 142
+ D +SF
Sbjct: 120 VTLRYSDSVGRVSFPS 135
Score = 28.7 bits (64), Expect = 0.74
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 98 QDGKIDLQELQKAFQELGIDIDENE------AKKLLKRMDKDGSLEISFNEWRDF 146
+ ID +LQ + + + + L+ M+ + + E+
Sbjct: 17 RGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARL 71
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 41.3 bits (97), Expect = 1e-05
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 10 LKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSG 69
L L EK + ++ G++ D + LK G+ L K + +D++ G
Sbjct: 1 LSLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKG 60
Query: 70 DISLAEFI 77
+S EF
Sbjct: 61 VLSKQEFF 68
Score = 30.2 bits (68), Expect = 0.13
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
+ ++ G++ + ++ G+ L D G L S E+
Sbjct: 17 YRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVL--SKQEF 67
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 42.5 bits (99), Expect = 2e-05
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 64 DSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEA 123
D + SG + L EF + + + +D ++ G ++ E++KA +E G +
Sbjct: 585 DEDGSGKLGLKEFYILWT-KIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLH 643
Query: 124 KKLLKRMDKDGSLEISFNEWRDFLLYC 150
+ ++ R D L I F+ +F+
Sbjct: 644 QVIVARFA-DDELIIDFD---NFVRCL 666
Score = 41.3 bits (96), Expect = 6e-05
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 23 EKLFVALDTDGNGKIDIHDLSKALKDFG------VHSLYAQKFLERSDSNRSGDISLAEF 76
+K++ +D D +G ++ +++ KAL++ G +H + +F ++ I F
Sbjct: 608 QKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARF-----ADDELIIDFDNF 662
Query: 77 IHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQ 108
+ + E ++ F LD G I L +
Sbjct: 663 VRCLVRLEILFKI-FKQLDPENTGTIQLDLIS 693
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-05
Identities = 26/191 (13%), Positives = 57/191 (29%), Gaps = 59/191 (30%)
Query: 8 AMLKLKLPQEDEERLEKLFV---ALDTDGN-GKIDIHDL-----SKALKDFGVHSLYAQK 58
+++ + + D + ++ I I + K ++ +H +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----RS 448
Query: 59 FLERSDSNR---SGDISLAEFIHYVKEHEKHLRLGFSHLDK-NQDGKIDLQELQKAFQEL 114
++ + + S D+ Y H +G HL ++ L F+ +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSH-----IGH-HLKNIEHPERMTL------FRMV 496
Query: 115 GIDIDENEAK---------------KLLKRM--------DKDGSLEISFNEWRDFL---- 147
+D E K L+++ D D E N DFL
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 148 ---LYCPFSDI 155
+ ++D+
Sbjct: 557 ENLICSKYTDL 567
Score = 33.3 bits (75), Expect = 0.040
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 51/188 (27%)
Query: 15 PQEDEERLEKLFVALDTDG--------NGKIDIHDLSKALKDFGVHSLYAQKFL---ERS 63
P+ E L+KL +D + N K+ IH + L+ Y L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 64 DSNR-------------SGDISLAEFI---HYVKEHEKHLRLGFSHLDKNQDGKIDLQEL 107
++ + + +F+ H + + E+
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-----------DEV 303
Query: 108 QKAFQE-LGIDIDE--NEAKK-------LLKRMDKDGSLEISFNEWRDFLLYCPFSDIRE 157
+ + L + E ++ +DG +++ W+ + + I E
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKH-VNCDKLTTIIE 360
Query: 158 QNVSAQKT 165
+++ +
Sbjct: 361 SSLNVLEP 368
Score = 29.8 bits (66), Expect = 0.53
Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 40/157 (25%)
Query: 21 RLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSN-----RSGD---IS 72
R +++ L I + S L V SL K+L+ + + + +S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLS 331
Query: 73 L-AEFIHYVKEHEKHLR-LGFSHLDKNQDGKIDLQ---ELQKAFQELGI----------- 116
+ AE I + + + L + +++ E +K F L +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 117 ------DIDENEA---------KKLLKRMDKDGSLEI 138
D+ +++ L+++ K+ ++ I
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 42.2 bits (98), Expect = 3e-05
Identities = 14/67 (20%), Positives = 34/67 (50%)
Query: 81 KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISF 140
+E R F+H D+ + G +D ++ + +G ++ E E +++ +D + ++F
Sbjct: 721 QEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTF 780
Query: 141 NEWRDFL 147
+ DF+
Sbjct: 781 QAFIDFM 787
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 39.6 bits (92), Expect = 1e-04
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 17/95 (17%)
Query: 18 DEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFI 77
+E F D DGN +D +LS A+ + S ++ +S E I
Sbjct: 66 PQELQLHYFKMHDYDGNNLLDGLELSTAI----------THVHKEEGSEQAPLMSEDELI 115
Query: 78 HYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
+ + DKN DG ID E K+ Q
Sbjct: 116 NIIDGV-------LRDDDKNNDGYIDYAEFAKSLQ 143
Score = 30.7 bits (69), Expect = 0.12
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQ--------ELGIDIDENE----AKKLLKRMD 131
++ F D + + +D EL A E + E+E +L+ D
Sbjct: 67 QELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDD 126
Query: 132 KDGSLEISFNEWR 144
K+ I + E+
Sbjct: 127 KNNDGYIDYAEFA 139
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 37.2 bits (87), Expect = 2e-04
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 84 EKHLRLGFSHLDKNQD--GKIDLQELQKAFQELGIDI--DENEAKKLLKRMDKDGSLEIS 139
+ ++ F + +I +EL+ Q LG + + ++++ +DK+G E+S
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63
Query: 140 FNE 142
F E
Sbjct: 64 FEE 66
Score = 24.5 bits (54), Expect = 7.5
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 17 EDEERLEKLFVALDTDGNGKID 38
+ L+++ +D +G+G++
Sbjct: 42 KGMSTLDEMIEEVDKNGDGEVS 63
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 39.6 bits (91), Expect = 2e-04
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 6/143 (4%)
Query: 2 LTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLE 61
L L K P D E E D N + +++ + D + + + ++
Sbjct: 75 LHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE---DNNLLTEKQKLRVK 131
Query: 62 RSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQ-DGKIDLQELQKAFQELGIDIDE 120
+ N + + + F LD++ DG + EL L E
Sbjct: 132 KIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPL--IPME 189
Query: 121 NEAKKLLKRMDKDGSLEISFNEW 143
+ + + D D I+ +EW
Sbjct: 190 HCTTRFFETCDLDNDKYIALDEW 212
Score = 31.9 bits (71), Expect = 0.082
Identities = 13/49 (26%), Positives = 17/49 (34%)
Query: 73 LAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDEN 121
LA + E F D + D I L E F DID++
Sbjct: 178 LAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKD 226
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 37.0 bits (85), Expect = 0.001
Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 23/150 (15%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKAL-----KDFGVHSLYAQKFLERSDSNRSGDISLA 74
+EK F L DG + K + +F V + L R ++
Sbjct: 28 AAVEKRFNQLQVDG--VLLRSRFGKCIGMDGSDEFAVQMFDS---LARKRGIVKQVLTKD 82
Query: 75 EFIHYV-----KEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ----ELGIDIDENEAKK 125
E + + + LR F +DKN DG++ +E+++ + + A +
Sbjct: 83 ELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADE 142
Query: 126 L----LKRMDKDGSLEISFNEWRDFLLYCP 151
++ +D I + LL P
Sbjct: 143 YTALIMEELDPTNLGYIEMEDLEALLLQSP 172
Score = 28.1 bits (62), Expect = 1.0
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 19 EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHS----------LYAQKFLERSDSNRS 68
+ RL F +D + +G++ ++ + + + Y +E D
Sbjct: 97 DNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNL 156
Query: 69 GDISLAEFIHYVKEHEKH 86
G I + + + +
Sbjct: 157 GYIEMEDLEALLLQSPSE 174
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 34.0 bits (78), Expect = 0.007
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 14 LPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISL 73
+ E+ + ++ F +L +G I G+ + +D N G +
Sbjct: 27 ITVEERAKHDQQFHSLK-PISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQ 85
Query: 74 AEFI 77
EF
Sbjct: 86 VEFS 89
Score = 25.2 bits (55), Expect = 8.7
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 9 MLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALK 47
+ LPQ L +++ D + +G++D + S A+K
Sbjct: 58 FFQSGLPQPV---LAQIWALADMNNDGRMDQVEFSIAMK 93
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 31.4 bits (71), Expect = 0.043
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAE 75
+ + F+ D + +G +D +L +AL + +Y K E +
Sbjct: 16 DPNRFNPKTFFILHDINSDGVLDEQEL-EALFTKELEKVYDPKNEE------------DD 62
Query: 76 FIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQ 112
+E + ++D NQD + L+E + Q
Sbjct: 63 MREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQ 99
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 32.7 bits (73), Expect = 0.049
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 92 SHLDKNQDGKIDLQELQKAF--QELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
L NQDG+I ++ + K F + ++ R + E S + FL
Sbjct: 159 LKLQVNQDGRIPVKNILKMFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFL 216
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 31.5 bits (70), Expect = 0.12
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 93 HLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDG--SLEISFNEWRDFLLY- 149
+ N +GKI ++ + F ++ + L + D + ++ FL+
Sbjct: 156 KMQLNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSL 215
Query: 150 CPFSDIRE 157
CP +I E
Sbjct: 216 CPRPEIDE 223
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 31.0 bits (69), Expect = 0.12
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 91 FSHLDKN-QDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
F LD++ DG + EL L E+ + + D D I+ +EW
Sbjct: 83 FGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEW 134
Score = 27.1 bits (59), Expect = 2.3
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 7/127 (5%)
Query: 1 MLTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQ--K 58
++TL L ++ + R++K+ G + L++ + ++ +
Sbjct: 23 LVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQ 82
Query: 59 FLERSDSNRS-GDISLAE---FIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQEL 114
F + D + G +S E + E F D + D I L E F
Sbjct: 83 F-GQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 141
Query: 115 GIDIDEN 121
DID++
Sbjct: 142 QKDIDKD 148
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 30.8 bits (70), Expect = 0.16
Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 102 IDLQELQKAFQE-LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDF 146
+D + F+E + ++ + +++ S+E+ + + F
Sbjct: 9 VDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMF 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.28
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 16/35 (45%)
Query: 119 DENEAKKLLKRMDKDGSLEISFNEWRDFLLYCPFS 153
++ KKL SL+ LY S
Sbjct: 18 EKQALKKL------QASLK----------LYADDS 36
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 28.5 bits (64), Expect = 0.30
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 100 GKIDLQELQKAFQ-ELGIDI-DENEAKKLLKRMDKDGSLEISFNE 142
++ +EL++ Q E + L + +DK+G E+SF E
Sbjct: 24 NQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEE 68
Score = 25.0 bits (55), Expect = 6.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 74 AEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQE 106
AEF +K + L F LDKN DG++ +E
Sbjct: 37 AEFPSLLKG-PRTLDDLFQELDKNGDGEVSFEE 68
Score = 24.6 bits (54), Expect = 6.8
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 8 AMLKLKLPQ--EDEERLEKLFVALDTDGNGKID 38
+++ + P + L+ LF LD +G+G++
Sbjct: 33 QLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVS 65
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 28.6 bits (64), Expect = 0.33
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 99 DGKIDLQELQKAFQ-ELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
+ +L+K + E I + A K +D + ++F E+
Sbjct: 26 FHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEF 71
Score = 25.5 bits (56), Expect = 4.0
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKR 129
F LD N DG ++ QE ++G+ + ++ K
Sbjct: 55 FKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE 93
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 30.1 bits (67), Expect = 0.38
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 7/108 (6%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL------YAQKFLERSDSN 66
K+ Q LE L +G KI +H ALK G+ + +
Sbjct: 60 KIKQGLLPSLEDLLFYTIAEGQEKIPVHKFITALKSTGLRTSDPRLKECMDMLRLTLQTT 119
Query: 67 RSGD-ISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE 113
G + F V+ + L F D + + ++
Sbjct: 120 SDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYES 167
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 28.2 bits (63), Expect = 0.54
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 99 DGKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
G + ++L+ ++ L D K++K +D+ ++ F + +
Sbjct: 22 KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLI 75
Score = 25.1 bits (55), Expect = 7.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 91 FSHLDKNQDGKIDLQE 106
LD+ +DGK+ Q
Sbjct: 55 MKDLDQCRDGKVGFQS 70
Score = 24.7 bits (54), Expect = 9.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 15 PQEDEERLEKLFVALDTDGNGKID 38
Q+D ++K+ LD +GK+
Sbjct: 44 NQKDPLAVDKIMKDLDQCRDGKVG 67
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 28.3 bits (63), Expect = 0.67
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 4 LKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKID 38
++ + LK ++E+ +E + LDT+ + ++
Sbjct: 40 VRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLS 74
Score = 26.4 bits (58), Expect = 2.6
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 73 LAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQE 106
L F+ ++EK + LD N D ++ +E
Sbjct: 44 LQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEE 77
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 27.4 bits (61), Expect = 0.80
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 75 EFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQE 106
E K + + LD+N+D +++ QE
Sbjct: 41 ELTIGSKLQDAEIARLMEDLDRNKDQEVNFQE 72
Score = 25.1 bits (55), Expect = 6.3
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 95 DKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
DK+ K +L+EL + +G + + E +L++ +D++ E++F E+ FL
Sbjct: 25 DKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFL 77
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 27.5 bits (61), Expect = 0.95
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
+ KI ++ Q+ L + A KL++ +D + ISF+E+
Sbjct: 20 YVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEY 77
Score = 25.2 bits (55), Expect = 7.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKR 129
+LD N DG+I E + I + ++ +
Sbjct: 61 IQNLDANHDGRISFDEYWTLIGGITGPIAKLIHEQEQQS 99
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin,
neddylation, DCN-1, center for eukaryotic structural
genomics, PSI; HET: CSO MSE; 1.30A {Galdieria
sulphuraria}
Length = 199
Score = 28.0 bits (62), Expect = 1.3
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGV--HSLYAQKFLERSDSNRSGDISL 73
+ D++ + +LF I L + +D V + + ++ + + S
Sbjct: 3 RADKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTCEFSE 62
Query: 74 AEFIHYVKE 82
EF+ +
Sbjct: 63 KEFVEGLAN 71
Score = 26.1 bits (57), Expect = 5.3
Identities = 12/75 (16%), Positives = 29/75 (38%)
Query: 84 EKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEW 143
+K + F + I + LQ+ F+++ +D + L ++ + E S E+
Sbjct: 6 KKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTCEFSEKEF 65
Query: 144 RDFLLYCPFSDIREQ 158
+ L + +
Sbjct: 66 VEGLANLQVDSLEKL 80
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 27.1 bits (60), Expect = 1.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 100 GKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
K++ EL++ LG DE +KL+ +D + E+ F E+ FL
Sbjct: 27 FKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
Score = 25.5 bits (56), Expect = 4.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 91 FSHLDKNQDGKIDLQE 106
S+LD N+D ++D QE
Sbjct: 59 MSNLDSNRDNEVDFQE 74
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module,
carbohydrate metabolism, cell WALL
biogenesis/degradation; 1.94A {Clostridium thermocellum
atcc 27405} PDB: 3p0d_C 2b59_B
Length = 321
Score = 28.1 bits (61), Expect = 1.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 28 ALDTDGNGKIDIHDLSKALKDFG 50
LD + NG I++ D+ K FG
Sbjct: 282 ELDINRNGAINMQDIMIVHKHFG 304
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 27.2 bits (60), Expect = 1.4
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 95 DKNQDGKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ K++ EL++ LG DE +KL+ +D + E+ F E+ FL
Sbjct: 34 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
Score = 24.9 bits (54), Expect = 8.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 91 FSHLDKNQDGKIDLQE 106
S+LD N+D ++D QE
Sbjct: 71 MSNLDSNRDNEVDFQE 86
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 27.7 bits (61), Expect = 1.5
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRD 145
+D ++DG I+++E + +E D L R DK ++E + W+
Sbjct: 21 HKQMDDDKDGGIEVEESDEFIREDMKYKDATNKHSHLHREDKHITIEDLWKRWKT 75
Score = 26.5 bits (58), Expect = 3.4
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHY 79
E L+ + +D D +G I++ + + +++ + K I++ +
Sbjct: 15 EALQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDATNK--HSHLHREDKHITIEDLWKR 72
Query: 80 VKEHEKH 86
K E H
Sbjct: 73 WKTSEVH 79
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 28.0 bits (62), Expect = 1.9
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 114 LGIDIDENEAKKLLKRMD-----KDGSLEISFNEWR-DFLLYCPFSDIRE 157
G+++++ E K+LL++M G ++ + +R D + DI E
Sbjct: 294 SGLELNDGEIKELLEKMMYEVEISRGRAKLKYPAFRDDIMHAR---DILE 340
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 1.9
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 7 EAMLKLKLPQEDEERLEKLFVALDTDGNGKIDIHDL----SKALKDFGVHSLYAQKFLER 62
E++ K + +E +RL++L D K+ + K L+++ + +++ +
Sbjct: 85 ESIRKWR--EEQRKRLQEL------DAASKVMEQEWREKAKKDLEEW--NQRQSEQVEKN 134
Query: 63 SDSNRSGDISLAEFI 77
+NR D F
Sbjct: 135 KINNRIAD---KAFY 146
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 26.8 bits (59), Expect = 2.0
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 100 GKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
K++ EL++ LG DE +KL+ +D + E+ F E+ FL
Sbjct: 30 FKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
Score = 24.8 bits (54), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 91 FSHLDKNQDGKIDLQE 106
S+LD N+D ++D QE
Sbjct: 62 MSNLDSNRDNEVDFQE 77
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil;
oxidoreductase; HET: MA5 NAP EPE; 2.70A
{Methanocaldococcus jannaschii} SCOP: c.71.1.2
Length = 219
Score = 27.5 bits (62), Expect = 2.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 16 QEDEERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHSL 54
++ + LE + V + G GK+D+ L L D G+ S+
Sbjct: 108 EKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSI 146
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 26.7 bits (59), Expect = 2.3
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 75 EFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKR 129
+ H +K+ LD NQD ++ E + EL +I + + K+ K+
Sbjct: 53 QLPHLLKDVGSLDEK-MKSLDVNQDSELKFNEYWRLIGELAKEIRKKKDLKIRKK 106
Score = 25.2 bits (55), Expect = 6.9
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 100 GKIDLQELQKAFQ-ELGIDI-DENEAKKLLKRMDKDGSLEISFNEW 143
+ + E ++ +L + D + +K +D + E+ FNE+
Sbjct: 39 DSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEY 84
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 25.7 bits (57), Expect = 2.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 25 LFVAL--DTDGNGKIDIHDLSKALKDFGVHSLYAQKFLERSDSNRSGDI 71
+FV L D +G+G I++ D+ + FG E++D N G I
Sbjct: 1 MFVKLKGDLNGDGVINMADVMILAQSFGKAIGNP-GVNEKADLNNDGVI 48
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 26.3 bits (58), Expect = 2.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 91 FSHLDKNQDGKIDLQE 106
F DKN+D KID E
Sbjct: 58 FEKKDKNEDKKIDFSE 73
Score = 25.1 bits (55), Expect = 6.9
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 98 QDGKIDLQELQK-------AFQELGIDIDENEAKKLLKRMDKDGSLEISFNE 142
+D KID L F N + ++ DK+ +I F+E
Sbjct: 22 RDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSE 73
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 27.4 bits (62), Expect = 2.6
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 29 LDTDGNGKIDIHDLSKALKD 48
+ D G + + +L K + +
Sbjct: 119 VPVDSRGVVKLEELEKLVDE 138
Score = 26.3 bits (59), Expect = 6.3
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 85 KHL-RLGF--SHLDKNQDGKIDLQELQKA 110
K+L GF ++ + G + L+EL+K
Sbjct: 107 KYLSMKGFKVKYVPVDSRGVVKLEELEKL 135
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 27.3 bits (61), Expect = 3.1
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 114 LGIDIDENEAKKLLKRM 130
+GI KLL RM
Sbjct: 318 VGIRETPENLAKLLTRM 334
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 27.0 bits (61), Expect = 3.3
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 29 LDTDGNGKIDIHDLSKALKD 48
+ G++D+ + + L+D
Sbjct: 118 IPVGKYGEVDVSFIDQKLRD 137
Score = 25.9 bits (58), Expect = 6.9
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 82 EHE------KHL-RLGFS--HLDKNQDGKIDLQELQKAFQE 113
EH K L + GF ++ + G++D+ + + ++
Sbjct: 97 EHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A
{Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A
1orb_A 2ora_A 1dp2_A* 1rhd_A
Length = 296
Score = 26.8 bits (60), Expect = 3.5
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 97 NQDGK-IDLQELQKAFQELGIDIDEN 121
+DG +EL+ F+ +D+ +
Sbjct: 217 TEDGFEKSPEELRAMFEAKKVDLTKP 242
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics,
structural genomics consortium, SGC, RH fold; 2.50A
{Homo sapiens}
Length = 302
Score = 26.8 bits (60), Expect = 3.6
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 97 NQDGK-IDLQELQKAFQELGIDIDEN 121
+Q+G +E++ FQE +D+ +
Sbjct: 231 SQEGLEKSPEEIRHLFQEKKVDLSKP 256
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein;
enolase, Mg ION, PSI-2, NYSGXRC, structural genomics;
2.90A {Rubrobacter xylanophilus dsm 9941}
Length = 410
Score = 26.8 bits (60), Expect = 3.6
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 10/37 (27%)
Query: 114 LGIDIDENEAKK-------LLKRMDKDGSLEISFNEW 143
LG+++DE A + + +G +
Sbjct: 377 LGLELDEEAAFEHRHEKGGVPFFGRTEGHH---HHHH 410
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 26.6 bits (58), Expect = 3.7
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 91 FSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFLLYC 150
+D + +G +D++E + F ++ + K IS +
Sbjct: 21 HKLMDDDANGDVDVEESDE-FLREDLNYHDPTVK---HSTFHGEDKLISVEDLWKAWKSS 76
Query: 151 PFSDIREQNV 160
+ V
Sbjct: 77 EVYNWTVDEV 86
Score = 26.2 bits (57), Expect = 4.3
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 20 ERLEKLFVALDTDGNGKIDIHDLSKALK-DFGVHSLYAQKFLERSDSNRSGDISLAEFIH 78
E + + +D D NG +D+ + + L+ D H + + IS+ +
Sbjct: 15 EAVRNIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVK---HSTFHGEDKLISVEDLWK 71
Query: 79 YVKEHEKH 86
K E +
Sbjct: 72 AWKSSEVY 79
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 26.0 bits (57), Expect = 3.8
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 95 DKNQDGKIDLQEL-QKAFQELGIDI-DENEAKKLLKRMDKDGSLEISFNEWRDFL 147
DK + + +L+EL QK E + K + +D + E+ F E+ L
Sbjct: 25 DKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
Score = 25.2 bits (55), Expect = 5.8
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 75 EFIHYVKEHEKHLRLG--FSHLDKNQDGKIDLQE 106
E + + S LD N+D ++D E
Sbjct: 41 ELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVE 74
Score = 25.2 bits (55), Expect = 7.5
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 1 MLTLKCEAMLKLKLPQEDEERLEKLFVALDTDGNGKID 38
+ L + + + E K LDT+ + ++D
Sbjct: 34 LKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVD 71
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 25.9 bits (57), Expect = 3.8
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 100 GKIDLQELQKAFQE--LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ +EL++ ++ ++ E+ L+K +DK+ EI F E+ FL
Sbjct: 27 LTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFL 76
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural
genomics, riken structur genomics/proteomics
initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus
thermophilus}
Length = 311
Score = 26.7 bits (60), Expect = 4.0
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDF 49
LP + +RL + + ++ + +L K ++
Sbjct: 8 TLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGA 44
>2gl5_A Putative dehydratase protein; structural genomics, protein
structure initiati nysgxrc; 1.60A {Salmonella
typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Length = 410
Score = 26.9 bits (60), Expect = 4.3
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 114 LGIDIDENEAKKLLKRMDKDG 134
LG ++++ K+ L + K+G
Sbjct: 384 LGQELNDEVVKEYLAYVIKEG 404
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 25.5 bits (56), Expect = 4.5
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 100 GKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
K+ +EL+ Q L + D + K++K +D++G E+ F E+ +
Sbjct: 26 YKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78
Score = 25.1 bits (55), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 91 FSHLDKNQDGKIDLQE 106
LD+N DG++D QE
Sbjct: 58 MKELDENGDGEVDFQE 73
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 26.7 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 85 KHL-RLGF--SHLDKNQDGKIDLQELQKAFQE 113
+ L R GF ++L ++G IDL+EL+ A ++
Sbjct: 131 RQLEREGFEVTYLAPQRNGIIDLKELEAAMRD 162
Score = 26.3 bits (59), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 29 LDTDGNGKIDIHDLSKALKD 48
L NG ID+ +L A++D
Sbjct: 143 LAPQRNGIIDLKELEAAMRD 162
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 26.7 bits (58), Expect = 4.7
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 80 VKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDE 120
V K+L+L + K+ ++ +LG E
Sbjct: 285 VSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAE 325
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC,
muconate lactonizing EN structural genomics, protein
structure initiative; 2.10A {Shewanella pealeana}
Length = 394
Score = 26.5 bits (59), Expect = 5.1
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 75 EFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQE--LGIDIDENEAKKLLKRM 130
E++H + + + K DG I++ + + LGI+++ +++
Sbjct: 334 EYLHPDFWNGTLTQQLTLNEPKIIDGAIEVSD------KPGLGIELNIEFVEQVTGHK 385
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout
mtase, adoMet binding, transferase; HET: SAM; 2.00A
{Thermotoga maritima}
Length = 192
Score = 26.3 bits (58), Expect = 5.1
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 22 LEKLFVAL----DTDGNGKI--------DIHDLSKALKDFGVHSLY 55
LEK++VAL +G I D+HD+++ + + + Y
Sbjct: 2 LEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYY 47
>2poz_A Putative dehydratase; octamer, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Length = 392
Score = 26.4 bits (59), Expect = 5.2
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 6/31 (19%)
Query: 114 LGIDIDENEAKKLLKRMDKDGSLEISFNEWR 144
LG + + + L +G +
Sbjct: 366 LGAVLIKRNIEPYLWASCTEG------HHHH 390
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT
initiative, RSGI, structural genomics, transferase;
1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Length = 285
Score = 26.4 bits (59), Expect = 5.3
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 97 NQDGKI-DLQELQKAFQELGIDIDE 120
N DG +EL+ ++ LGI D+
Sbjct: 210 NPDGTFKSAEELRALYEPLGITKDK 234
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 26.4 bits (59), Expect = 5.4
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 46 LKDFGVHSLYAQKFLERSDSNRSGDISLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQ 105
+ + S ++L R + + + I ++ ++L+ G D D
Sbjct: 256 RERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHG-DFI 314
Query: 106 ELQKAFQELGIDIDENEA 123
+ A +++G+D +E
Sbjct: 315 RMCTAMKKIGLDDEEKLD 332
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 25.5 bits (56), Expect = 5.4
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 95 DKNQDGKIDLQEL-QKAFQELGIDI-DENEAKKLLKRMDKDGSLEISFNEW 143
+ K +L++L K +I D+ ++ + +D + ++ F E+
Sbjct: 27 HFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEF 77
Score = 25.1 bits (55), Expect = 5.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 91 FSHLDKNQDGKIDLQE 106
F LD NQD ++D QE
Sbjct: 61 FQGLDANQDEQVDFQE 76
Score = 24.7 bits (54), Expect = 7.8
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 16 QEDEERLEKLFVALDTDGNGKID 38
+D+ ++++F LD + + ++D
Sbjct: 51 IKDKAVIDEIFQGLDANQDEQVD 73
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase,
DNA binding protein, ADP- transferase, PARP-like zinc
finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo
sapiens} PDB: 2cr9_A
Length = 506
Score = 26.4 bits (57), Expect = 5.5
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 72 SLAEFIHYVKEHEKHLRLGFSHLDKNQDGKIDLQELQKAFQELGIDIDENEAKKLLKRMD 131
L + I V+ +K + L K GK+ +++Q A+ L +E ++ + +
Sbjct: 155 DLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSIL------SEVQQAVSQGS 208
Query: 132 KDGSLEISFNEW 143
D + N +
Sbjct: 209 SDSQILDLSNRF 220
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 26.2 bits (57), Expect = 5.8
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 37/169 (21%)
Query: 2 LTLKCEAMLKLKLPQED--------EERLEKLFVALDTDGNGKIDIHDLSKALKDFGVHS 53
L+ C+A+ + L Q D L ++ L+ + N +++
Sbjct: 81 LSAACDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCV---------D 131
Query: 54 LYAQKFLERSDSNRSGDISLAEFIHYVK-----EHEKHLRLGFSHLDKNQDGKIDLQELQ 108
+ L D+ R+G I + F + E R F + + G D + L
Sbjct: 132 MCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLG 190
Query: 109 KAFQEL-------------GIDIDENEAKKLLKRMDKDGSLEIS-FNEW 143
+ G E + + + +E + F +W
Sbjct: 191 LLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDW 239
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 26.3 bits (58), Expect = 6.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 98 QDGKIDLQELQKAFQELGIDID 119
+ G+ID + + A + ID D
Sbjct: 858 KRGEIDKKVVADAIAKFNIDAD 879
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase,
structural genomics, PSI, structure initiative; 1.90A
{Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Length = 277
Score = 26.0 bits (58), Expect = 6.5
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 97 NQDGK-IDLQELQKAFQELGIDIDEN 121
N+DG +EL K + + G+D +
Sbjct: 203 NEDGTFKSDEELAKLYADAGLDNSKE 228
>3qxb_A Putative xylose isomerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; 1.90A {Rhodospirillum rubrum}
Length = 316
Score = 26.2 bits (57), Expect = 6.6
Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 69 GDISLAEFIHYVKEHEKHL------RLGFSHLDKNQDGKIDLQELQKAFQELGID 117
+ + ++ + H Q G + Q LQ + + +
Sbjct: 225 PEADMDHWMDLCQPWIAAYHIQQTDGQLDRHWSFTQPGVVTPQRLQDFWDKYALT 279
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 26.0 bits (58), Expect = 7.7
Identities = 3/37 (8%), Positives = 9/37 (24%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDF 49
+ E L + F + + ++
Sbjct: 36 RFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGA 72
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 24.8 bits (54), Expect = 7.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 91 FSHLDKNQDGKIDLQE 106
LD+N D ++D QE
Sbjct: 60 MGSLDENSDQQVDFQE 75
Score = 24.8 bits (54), Expect = 8.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 95 DKNQDGKIDLQEL-QKAFQELGIDI-DENEAKKLLKRMDKDGSLEISFNEWRDFL 147
DK + K +++EL K + DE KKL+ +D++ ++ F E+ FL
Sbjct: 26 DKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFL 80
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 24.8 bits (54), Expect = 7.9
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 100 GKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
K+ EL++ L ++ K+++ +D +G E F E+ F+
Sbjct: 26 HKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFV 78
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 24.8 bits (54), Expect = 8.2
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 95 DKNQDGKIDLQEL-QKAFQE-LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
DK + K +L+EL + L D +K++ +D + E+ FNE+ +
Sbjct: 25 DKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 25.8 bits (57), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 107 LQKAFQELGIDI-DENEAKKLLKRMDKDG 134
L+KA +E GID + KL+ ++ D
Sbjct: 256 LRKAAKEQGIDTRLNSRVVKLV--VNDDH 282
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 25.6 bits (57), Expect = 9.0
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 13 KLPQEDEERLEKLFVALDTDGNGKIDIHDLSKALKDF 49
LP+ R + + + + KI I ++ + K
Sbjct: 9 PLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSV 45
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 24.8 bits (54), Expect = 9.7
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 100 GKIDLQELQKAFQE-----LGIDIDENEAKKLLKRMDKDGSLEISFNEWRDFL 147
+ EL+ ++ L D++ KLLK +D +G ++ F+E+ F+
Sbjct: 26 QTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFV 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,700,190
Number of extensions: 159428
Number of successful extensions: 2090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1347
Number of HSP's successfully gapped: 483
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)