BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy688
         (267 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8ZQQ2|SLRP_SALTY E3 ubiquitin-protein ligase SlrP OS=Salmonella typhimurium (strain
           LT2 / SGSC1412 / ATCC 700720) GN=slrP PE=1 SV=1
          Length = 765

 Score = 33.1 bits (74), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 16/240 (6%)

Query: 16  IKSLPYIIKSLPYIIKSLPYIINTLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSL 75
           +KSLP   ++L   IK+L    N L  I  +LP  I+ +   I  +  + + LP  ++SL
Sbjct: 211 LKSLP---ENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSL 267

Query: 76  PYIIKSLPYIIKSLPYIIKSL---PYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLP 132
                 +  + ++LP  ++ L      I++LP     LP  I  L     SL  + ++LP
Sbjct: 268 DLFHNKISCLPENLPEELRYLSVYDNSIRTLPA---HLPSGITHLNVQSNSLTALPETLP 324

Query: 133 YIIKSLPYIIKSLPYIIKSLPYIIKSLPYIINTLPYIIKSLPYIIKSLPYIIKSLPYIIK 192
             +K+L     +L  +  SLP  ++ L    N +  + ++LP  I +L     +L  + +
Sbjct: 325 PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPE 384

Query: 193 SLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPY----IIKSLPY---IIKSLPYIIKSLPY 245
           +LP  ++ +     +L  + +SLP+     P     I++  P+    I+++  ++ S+ Y
Sbjct: 385 NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRLMSSVDY 444


>sp|D0ZRB2|SLRP_SALT1 E3 ubiquitin-protein ligase SlrP OS=Salmonella typhimurium (strain
           14028s / SGSC 2262) GN=slrP PE=3 SV=1
          Length = 765

 Score = 32.7 bits (73), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 16/240 (6%)

Query: 16  IKSLPYIIKSLPYIIKSLPYIINTLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSL 75
           +KSLP   ++L   IK+L    N L  I  +LP  I+ +   I  +  + + LP  ++SL
Sbjct: 211 LKSLP---ENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSL 267

Query: 76  PYIIKSLPYIIKSLPYIIKSL---PYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLP 132
                 +  + ++LP  ++ L      I++LP     LP  I  L     SL  + ++LP
Sbjct: 268 DLFHNKISCLPENLPEELRYLSVYDNSIRTLPA---HLPSEITHLNVQSNSLTALPETLP 324

Query: 133 YIIKSLPYIIKSLPYIIKSLPYIIKSLPYIINTLPYIIKSLPYIIKSLPYIIKSLPYIIK 192
             +K+L     +L  +  SLP  ++ L    N +  + ++LP  I +L     +L  + +
Sbjct: 325 PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPE 384

Query: 193 SLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPY----IIKSLPY---IIKSLPYIIKSLPY 245
           +LP  ++ +     +L  + +SLP+     P     I++  P+    I+++  ++ S+ Y
Sbjct: 385 NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRLMSSVDY 444


>sp|Q9QX47|SON_MOUSE Protein SON OS=Mus musculus GN=Son PE=1 SV=2
          Length = 2444

 Score = 31.6 bits (70), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 36/87 (41%)

Query: 181 PYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII 240
           PY +   PY +   PY +   PY +    Y +   PY +   PY +   PY +   PY I
Sbjct: 908 PYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRVSPRPYRI 967

Query: 241 KSLPYIIKSLPYIIKSLPYIIKRVRKM 267
               Y I   PY +   P ++   R M
Sbjct: 968 APRSYRIAPRPYRLAPRPLMLASRRSM 994


>sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4
          Length = 2426

 Score = 31.2 bits (69), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 36/87 (41%)

Query: 181 PYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII 240
           PY +   PY +   PY +   PY +    Y +   PY +   PY +   PY +   PY I
Sbjct: 913 PYRLAQDPYRLAQDPYRLGHDPYRLGHDAYRLGQDPYRLGHDPYRLTPDPYRMSPRPYRI 972

Query: 241 KSLPYIIKSLPYIIKSLPYIIKRVRKM 267
               Y I   PY +   P ++   R M
Sbjct: 973 APRSYRIAPRPYRLAPRPLMLASRRSM 999


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.150    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,284,805
Number of Sequences: 539616
Number of extensions: 3476498
Number of successful extensions: 13362
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12990
Number of HSP's gapped (non-prelim): 235
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)