Query psy688
Match_columns 267
No_of_seqs 106 out of 130
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 20:44:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1200|consensus 1.2 1E+03 0.022 22.8 -0.9 17 2-18 183-199 (256)
2 PF09061 Stirrup: Stirrup; In 0.8 3E+03 0.066 16.4 0.9 6 261-266 56-61 (79)
3 PF15377 DUF4604: Domain of un 0.7 3.2E+03 0.07 16.9 0.8 14 3-16 1-15 (158)
4 PF13782 SpoVAB: Stage V sporu 0.7 7.3E+03 0.16 14.8 2.9 17 249-265 68-84 (110)
5 PF07453 NUMOD1: NUMOD1 domain 0.6 1.8E+03 0.038 13.8 -0.9 7 2-8 22-28 (37)
6 PF11865 DUF3385: Domain of un 0.6 6.1E+03 0.13 15.2 2.0 16 250-265 123-138 (160)
7 KOG0821|consensus 0.6 4.4E+03 0.095 19.0 1.1 9 258-266 144-152 (326)
8 PRK14056 phenylalanine 4-monoo 0.5 3.2E+03 0.07 21.7 -0.1 9 2-10 162-170 (578)
9 COG3869 Arginine kinase [Amino 0.5 3.1E+03 0.067 20.5 -0.3 15 3-17 32-46 (352)
10 COG2048 HdrB Heterodisulfide r 0.5 3.9E+03 0.085 19.0 0.2 7 2-8 60-66 (293)
No 1
>KOG1200|consensus
Probab=1.15 E-value=1e+03 Score=22.83 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.0
Q ss_pred ccccchhhhhhhhHHhH
Q psy688 2 AARNLSIINTLPYIIKS 18 (267)
Q Consensus 2 ~~~~~~i~k~LPlfiK~ 18 (267)
|.||.+.|.++|=||+.
T Consensus 183 a~knIrvN~VlPGFI~t 199 (256)
T KOG1200|consen 183 ARKNIRVNVVLPGFIAT 199 (256)
T ss_pred hhcCceEeEeccccccC
Confidence 56788999999988874
No 2
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=0.79 E-value=3e+03 Score=16.43 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=2.8
Q ss_pred HHHhhh
Q psy688 261 IKRVRK 266 (267)
Q Consensus 261 ik~l~~ 266 (267)
.||+||
T Consensus 56 vkmlrk 61 (79)
T PF09061_consen 56 VKMLRK 61 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 3
>PF15377 DUF4604: Domain of unknown function (DUF4604)
Probab=0.71 E-value=3.2e+03 Score=16.94 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=7.0
Q ss_pred cccchhhh-hhhhHH
Q psy688 3 ARNLSIIN-TLPYII 16 (267)
Q Consensus 3 ~~~~~i~k-~LPlfi 16 (267)
++|+|-++ ..|=|+
T Consensus 1 ~knlsY~~p~eP~FL 15 (158)
T PF15377_consen 1 AKNLSYVKPQEPPFL 15 (158)
T ss_pred CCCceecCCCCCHHH
Confidence 35555555 444443
No 4
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=0.69 E-value=7.3e+03 Score=14.79 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=8.7
Q ss_pred hHhHHHhHhHHHHHHhh
Q psy688 249 SLPYIIKSLPYIIKRVR 265 (267)
Q Consensus 249 ~lplfik~lPl~ik~l~ 265 (267)
.+--..+++|.+.|+.|
T Consensus 68 ALaEvlnv~PIlarRi~ 84 (110)
T PF13782_consen 68 ALAEVLNVFPILARRIG 84 (110)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444555566655543
No 5
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=0.63 E-value=1.8e+03 Score=13.85 Aligned_cols=7 Identities=71% Similarity=0.786 Sum_probs=2.9
Q ss_pred ccccchh
Q psy688 2 AARNLSI 8 (267)
Q Consensus 2 ~~~~~~i 8 (267)
|||.+.+
T Consensus 22 Aa~~l~i 28 (37)
T PF07453_consen 22 AARYLGI 28 (37)
T ss_pred HHHHhCC
Confidence 3444443
No 6
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=0.59 E-value=6.1e+03 Score=15.15 Aligned_cols=16 Identities=25% Similarity=0.831 Sum_probs=7.8
Q ss_pred HhHHHhHhHHHHHHhh
Q psy688 250 LPYIIKSLPYIIKRVR 265 (267)
Q Consensus 250 lplfik~lPl~ik~l~ 265 (267)
.|++=++.|-++.+.|
T Consensus 123 v~~L~~viP~~l~~i~ 138 (160)
T PF11865_consen 123 VPYLPQVIPIFLRVIR 138 (160)
T ss_pred hhHHHHHhHHHHHHHH
Confidence 4444445555555444
No 7
>KOG0821|consensus
Probab=0.57 E-value=4.4e+03 Score=19.02 Aligned_cols=9 Identities=44% Similarity=0.748 Sum_probs=4.0
Q ss_pred HHHHHHhhh
Q psy688 258 PYIIKRVRK 266 (267)
Q Consensus 258 Pl~ik~l~~ 266 (267)
|+.||.+|.
T Consensus 144 pliik~l~~ 152 (326)
T KOG0821|consen 144 PLIIKWLEN 152 (326)
T ss_pred hHHHHHHhh
Confidence 344444443
No 8
>PRK14056 phenylalanine 4-monooxygenase; Provisional
Probab=0.52 E-value=3.2e+03 Score=21.67 Aligned_cols=9 Identities=56% Similarity=0.807 Sum_probs=0.0
Q ss_pred ccccchhhh
Q psy688 2 AARNLSIIN 10 (267)
Q Consensus 2 ~~~~~~i~k 10 (267)
|.|++||.|
T Consensus 162 Air~lsi~K 170 (578)
T PRK14056 162 AVRTLSIVK 170 (578)
T ss_pred hhhhhhhcc
No 9
>COG3869 Arginine kinase [Amino acid transport and metabolism]
Probab=0.51 E-value=3.1e+03 Score=20.52 Aligned_cols=15 Identities=47% Similarity=0.578 Sum_probs=0.0
Q ss_pred cccchhhhhhhhHHh
Q psy688 3 ARNLSIINTLPYIIK 17 (267)
Q Consensus 3 ~~~~~i~k~LPlfiK 17 (267)
|||+|-++..|..-|
T Consensus 32 ARNl~~~~Fp~~~s~ 46 (352)
T COG3869 32 ARNLSVSKFPPCLSK 46 (352)
T ss_pred hhccccCcCCcccch
No 10
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=0.49 E-value=3.9e+03 Score=18.96 Aligned_cols=7 Identities=57% Similarity=0.881 Sum_probs=0.0
Q ss_pred ccccchh
Q psy688 2 AARNLSI 8 (267)
Q Consensus 2 ~~~~~~i 8 (267)
+|||.++
T Consensus 60 ~aRn~~i 66 (293)
T COG2048 60 NARNIAI 66 (293)
T ss_pred cccchhh
Done!