Query psy688
Match_columns 267
No_of_seqs 106 out of 130
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 20:45:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xkm_A Distinctin chain A; por 0.7 2.3E+03 0.08 13.1 0.9 7 260-266 12-18 (26)
2 2k9m_A RNA polymerase sigma fa 0.5 2.5E+03 0.086 16.0 0.4 12 2-13 72-83 (130)
3 2an7_A Protein PARD; bacterial 0.3 3E+03 0.1 15.6 -0.4 7 4-10 23-29 (83)
4 3ech_C 25-MER fragment of prot 0.3 2E+03 0.067 13.3 -1.3 5 1-5 11-15 (25)
5 1tf5_A Preprotein translocase 0.3 4.2E+03 0.14 19.8 0.4 8 1-8 489-496 (844)
6 1f7c_A Rhogap protein; GTPase 0.3 3.3E+03 0.11 16.1 -0.4 9 1-9 171-179 (231)
7 1pbw_A Rhogap domain, phosphat 0.3 3.4E+03 0.12 15.8 -0.4 9 1-9 156-164 (216)
8 1efv_A Electron transfer flavo 0.3 7E+03 0.24 15.1 1.6 14 253-266 301-314 (315)
9 3eap_A RHO GTPase-activating p 0.3 3.7E+03 0.13 16.3 -0.4 9 1-9 208-216 (271)
10 1nkt_A Preprotein translocase 0.3 4.8E+03 0.17 19.7 0.4 8 1-8 517-524 (922)
No 1
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=0.71 E-value=2.3e+03 Score=13.06 Aligned_cols=7 Identities=57% Similarity=0.928 Sum_probs=3.6
Q ss_pred HHHHhhh
Q psy688 260 IIKRVRK 266 (267)
Q Consensus 260 ~ik~l~~ 266 (267)
+||-+||
T Consensus 12 liktlrk 18 (26)
T 1xkm_A 12 LIKTLRK 18 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4555554
No 2
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=0.52 E-value=2.5e+03 Score=16.05 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=5.6
Q ss_pred ccccchhhhhhh
Q psy688 2 AARNLSIINTLP 13 (267)
Q Consensus 2 ~~~~~~i~k~LP 13 (267)
+|||++=.=.+|
T Consensus 72 gArdL~ECLllQ 83 (130)
T 2k9m_A 72 CSKDVWEFLELQ 83 (130)
T ss_dssp TTSCTTHHHHHH
T ss_pred ccCCHHHHHHHH
Confidence 455555443333
No 3
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=0.33 E-value=3e+03 Score=15.59 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=3.1
Q ss_pred ccchhhh
Q psy688 4 RNLSIIN 10 (267)
Q Consensus 4 ~~~~i~k 10 (267)
|+.||++
T Consensus 23 qG~SInq 29 (83)
T 2an7_A 23 QGKTIKQ 29 (83)
T ss_dssp HTSCHHH
T ss_pred cCCcHHH
Confidence 4444444
No 4
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=0.32 E-value=2e+03 Score=13.35 Aligned_cols=5 Identities=60% Similarity=0.640 Sum_probs=0.0
Q ss_pred Ccccc
Q psy688 1 MAARN 5 (267)
Q Consensus 1 ~~~~~ 5 (267)
||.||
T Consensus 11 ~arrn 15 (25)
T 3ech_C 11 AARRN 15 (26)
T ss_dssp HHHHT
T ss_pred HHHHh
No 5
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=0.32 E-value=4.2e+03 Score=19.84 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=0.0
Q ss_pred Cccccchh
Q psy688 1 MAARNLSI 8 (267)
Q Consensus 1 ~~~~~~~i 8 (267)
||||++.|
T Consensus 489 mAgRG~DI 496 (844)
T 1tf5_A 489 MAGRGTDI 496 (844)
T ss_dssp TSSTTCCC
T ss_pred ccccCcCc
No 6
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=0.31 E-value=3.3e+03 Score=16.14 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=0.0
Q ss_pred Cccccchhh
Q psy688 1 MAARNLSII 9 (267)
Q Consensus 1 ~~~~~~~i~ 9 (267)
|.++|+++.
T Consensus 171 M~~~NLAiv 179 (231)
T 1f7c_A 171 MTVANLGVV 179 (231)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
No 7
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=0.30 E-value=3.4e+03 Score=15.80 Aligned_cols=9 Identities=56% Similarity=0.552 Sum_probs=0.0
Q ss_pred Cccccchhh
Q psy688 1 MAARNLSII 9 (267)
Q Consensus 1 ~~~~~~~i~ 9 (267)
|.++|+++.
T Consensus 156 M~~~NLAiv 164 (216)
T 1pbw_A 156 LNARVLSEI 164 (216)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
No 8
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=0.28 E-value=7e+03 Score=15.15 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=0.0
Q ss_pred HHhHhHHHHHHhhh
Q psy688 253 IIKSLPYIIKRVRK 266 (267)
Q Consensus 253 fik~lPl~ik~l~~ 266 (267)
.++++|-+++.+|+
T Consensus 301 l~~v~P~L~~~l~~ 314 (315)
T 1efv_A 301 LFKVVPEMTEILKK 314 (315)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
No 9
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=0.28 E-value=3.7e+03 Score=16.35 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=0.0
Q ss_pred Cccccchhh
Q psy688 1 MAARNLSII 9 (267)
Q Consensus 1 ~~~~~~~i~ 9 (267)
|.++|+++.
T Consensus 208 M~~~NLAiv 216 (271)
T 3eap_A 208 MDSSNLAVI 216 (271)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
No 10
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=0.27 E-value=4.8e+03 Score=19.74 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=0.0
Q ss_pred Cccccchh
Q psy688 1 MAARNLSI 8 (267)
Q Consensus 1 ~~~~~~~i 8 (267)
||||+..|
T Consensus 517 mAgRGtDI 524 (922)
T 1nkt_A 517 MAGRGTDI 524 (922)
T ss_dssp TCSTTCCC
T ss_pred hhhcCccc
Done!