Query psy688
Match_columns 267
No_of_seqs 106 out of 130
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 20:45:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy688.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/688hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dq3a2 d.50.3.1 (A:336-414) P 0.8 9E+02 0.066 16.4 0.9 7 260-266 55-61 (79)
2 d2dmda3 g.37.1.1 (A:62-90) Zin 0.4 1.2E+03 0.087 13.2 -0.2 6 2-7 12-17 (29)
3 d1wv3a1 b.26.1.4 (A:1-78) Prot 0.3 1.6E+03 0.12 14.8 -0.6 10 3-12 54-63 (78)
4 d2inwa1 d.110.8.1 (A:4-120) Hy 0.3 2.8E+03 0.21 14.6 0.9 12 256-267 62-73 (117)
5 d1nh9a_ d.68.6.1 (A:) DNA-bind 0.3 2.4E+03 0.17 13.8 0.3 9 3-11 33-41 (87)
6 d1qh4a2 d.128.1.2 (A:103-381) 0.2 2.2E+03 0.16 16.4 -0.1 6 2-7 31-36 (279)
7 d1nkta4 c.37.1.19 (A:397-615) 0.2 2.6E+03 0.19 16.0 0.4 8 1-8 91-98 (219)
8 d1m15a2 d.128.1.2 (A:96-357) A 0.2 2.3E+03 0.16 16.2 -0.1 6 2-7 32-37 (262)
9 d1ttea1 a.5.2.1 (A:161-215) Ub 0.2 3.4E+03 0.25 12.3 1.0 8 260-267 26-33 (55)
10 d1x93a1 a.43.1.3 (A:31-73) Unc 0.2 3.8E+03 0.28 11.4 1.1 9 259-267 34-42 (43)
No 1
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=0.79 E-value=9e+02 Score=16.43 Aligned_cols=7 Identities=43% Similarity=0.814 Sum_probs=3.3
Q ss_pred HHHHhhh
Q psy688 260 IIKRVRK 266 (267)
Q Consensus 260 ~ik~l~~ 266 (267)
+.||+||
T Consensus 55 lvkmlrk 61 (79)
T d1dq3a2 55 LVKMLRK 61 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3455554
No 2
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.40 E-value=1.2e+03 Score=13.25 Aligned_cols=6 Identities=67% Similarity=0.673 Sum_probs=2.9
Q ss_pred ccccch
Q psy688 2 AARNLS 7 (267)
Q Consensus 2 ~~~~~~ 7 (267)
|+||-|
T Consensus 12 ~srnss 17 (29)
T d2dmda3 12 ASRNSS 17 (29)
T ss_dssp EESSHH
T ss_pred ccCCch
Confidence 455544
No 3
>d1wv3a1 b.26.1.4 (A:1-78) Protein EssC {Staphylococcus aureus [TaxId: 1280]}
Probab=0.27 E-value=1.6e+03 Score=14.79 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=0.0
Q ss_pred cccchhhhhh
Q psy688 3 ARNLSIINTL 12 (267)
Q Consensus 3 ~~~~~i~k~L 12 (267)
|..-||+|++
T Consensus 54 anhtsinkvl 63 (78)
T d1wv3a1 54 ANHTSINKVL 63 (78)
T ss_dssp ETTEECSSEE
T ss_pred cccceeeeeE
No 4
>d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella flexneri [TaxId: 623]}
Probab=0.27 E-value=2.8e+03 Score=14.57 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=0.0
Q ss_pred HhHHHHHHhhhC
Q psy688 256 SLPYIIKRVRKM 267 (267)
Q Consensus 256 ~lPl~ik~l~~~ 267 (267)
..|.+||-+..|
T Consensus 62 aFP~~ikqlE~m 73 (117)
T d2inwa1 62 AFPLLMKQLELM 73 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 5
>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=0.26 E-value=2.4e+03 Score=13.78 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=0.0
Q ss_pred cccchhhhh
Q psy688 3 ARNLSIINT 11 (267)
Q Consensus 3 ~~~~~i~k~ 11 (267)
||+-+|++.
T Consensus 33 ArG~aIsrA 41 (87)
T d1nh9a_ 33 ARGKAINKA 41 (87)
T ss_dssp EEGGGHHHH
T ss_pred EcchhhhHH
No 6
>d1qh4a2 d.128.1.2 (A:103-381) Creatine kinase, C-terminal domain {Chicken (Gallus gallus), brain-type [TaxId: 9031]}
Probab=0.25 E-value=2.2e+03 Score=16.39 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=0.0
Q ss_pred ccccch
Q psy688 2 AARNLS 7 (267)
Q Consensus 2 ~~~~~~ 7 (267)
.|||++
T Consensus 31 laRNl~ 36 (279)
T d1qh4a2 31 TGRSIR 36 (279)
T ss_dssp EEECBT
T ss_pred eeeccC
No 7
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=0.24 E-value=2.6e+03 Score=15.98 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=0.0
Q ss_pred Cccccchh
Q psy688 1 MAARNLSI 8 (267)
Q Consensus 1 ~~~~~~~i 8 (267)
||.|+-.|
T Consensus 91 MAGRGTDI 98 (219)
T d1nkta4 91 MAGRGTDI 98 (219)
T ss_dssp TCSTTCCC
T ss_pred ccCCCCce
No 8
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=0.24 E-value=2.3e+03 Score=16.17 Aligned_cols=6 Identities=33% Similarity=0.600 Sum_probs=0.0
Q ss_pred ccccch
Q psy688 2 AARNLS 7 (267)
Q Consensus 2 ~~~~~~ 7 (267)
.|||++
T Consensus 32 laRNl~ 37 (262)
T d1m15a2 32 CGRSLQ 37 (262)
T ss_dssp EEECBT
T ss_pred eeeccC
No 9
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=0.24 E-value=3.4e+03 Score=12.30 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=0.0
Q ss_pred HHHHhhhC
Q psy688 260 IIKRVRKM 267 (267)
Q Consensus 260 ~ik~l~~~ 267 (267)
.|-++|+|
T Consensus 26 vI~VLrrl 33 (55)
T d1ttea1 26 IVEVLRRL 33 (55)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
No 10
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=0.23 E-value=3.8e+03 Score=11.37 Aligned_cols=9 Identities=56% Similarity=1.088 Sum_probs=0.0
Q ss_pred HHHHHhhhC
Q psy688 259 YIIKRVRKM 267 (267)
Q Consensus 259 l~ik~l~~~ 267 (267)
+..|.+||.
T Consensus 34 yilkalrki 42 (43)
T d1x93a1 34 YILKALRKI 42 (43)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHcc
Done!