RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy688
         (267 letters)



>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
           {Human (Homo sapiens), AGX1 [TaxId: 9606]}
          Length = 501

 Score = 30.0 bits (67), Expect = 0.28
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 36  IINTLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII--KSLPYII 93
             + +             L +   ++     ++P++   +      L + +  K +PY+ 
Sbjct: 303 EYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVD 362

Query: 94  KSLPYIIKSLPYIIK 108
                I    P  IK
Sbjct: 363 TQGQLIKPDKPNGIK 377



 Score = 30.0 bits (67), Expect = 0.28
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 162 IINTLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII--KSLPYII 219
             + +             L +   ++     ++P++   +      L + +  K +PY+ 
Sbjct: 303 EYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVD 362

Query: 220 KSLPYIIKSLPYIIK 234
                I    P  IK
Sbjct: 363 TQGQLIKPDKPNGIK 377



 Score = 29.6 bits (66), Expect = 0.38
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 117 LPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIINTLPYIIKSLPYI 176
           +             L +   ++     ++P++   +      L + +       K +PY+
Sbjct: 307 ISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVA-----QKKIPYV 361

Query: 177 IKSLPYIIKSLPYIIK 192
                 I    P  IK
Sbjct: 362 DTQGQLIKPDKPNGIK 377



 Score = 29.2 bits (65), Expect = 0.51
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 8   IINTLPYIIKSLPYIIKSLPYIIKSLPYIINTLPYIIKSLPYIIKSLPYII--KSLPYII 65
             + +             L +   ++     T+P++   +      L + +  K +PY+ 
Sbjct: 303 EYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVD 362

Query: 66  KSLPYIIKSLPYIIK 80
                I    P  IK
Sbjct: 363 TQGQLIKPDKPNGIK 377



 Score = 28.8 bits (64), Expect = 0.68
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 68  LPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII--KSLPYIIKSLP 125
           +             L +   ++     ++P++   +      L + +  K +PY+     
Sbjct: 307 ISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQ 366

Query: 126 YIIKSLPYIIK 136
            I    P  IK
Sbjct: 367 LIKPDKPNGIK 377



 Score = 28.8 bits (64), Expect = 0.68
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 194 LPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII--KSLPYIIKSLP 251
           +             L +   ++     ++P++   +      L + +  K +PY+     
Sbjct: 307 ISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQ 366

Query: 252 YIIKSLPYIIK 262
            I    P  IK
Sbjct: 367 LIKPDKPNGIK 377



 Score = 28.4 bits (63), Expect = 0.90
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 159 LPYIINTLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII--KSLPYIIKSLP 216
           +             L +   ++     ++P++   +      L + +  K +PY+     
Sbjct: 307 ISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQ 366

Query: 217 YIIKSLPYIIK 227
            I    P  IK
Sbjct: 367 LIKPDKPNGIK 377



 Score = 28.0 bits (62), Expect = 1.3
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 152 LPYIIKSLPYIINTLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYII--KSLPYIIKSLP 209
           +             L +   ++     ++P++   +      L + +  K +PY+     
Sbjct: 307 ISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQ 366

Query: 210 YIIKSLPYIIK 220
            I    P  IK
Sbjct: 367 LIKPDKPNGIK 377



 Score = 27.6 bits (61), Expect = 1.7
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 96  LPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYIIKSLPYI 155
           +             L +   ++     ++P++   +      L + +       K +PY+
Sbjct: 307 ISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHV-----AQKKIPYV 361

Query: 156 IKSLPYIINTLPYIIK 171
                 I    P  IK
Sbjct: 362 DTQGQLIKPDKPNGIK 377


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.150    0.432 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,056,356
Number of extensions: 54847
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 27
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)