Query psy6883
Match_columns 414
No_of_seqs 245 out of 866
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 20:56:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 3.2E-44 1.1E-48 302.7 5.8 101 143-243 1-101 (102)
2 2hdc_A Protein (transcription 100.0 3E-44 1E-48 300.5 3.0 97 144-240 1-97 (97)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 1.4E-43 4.6E-48 298.0 4.9 98 144-241 1-99 (100)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 9.6E-44 3.3E-48 303.2 3.8 102 143-244 1-102 (109)
5 2c6y_A Forkhead box protein K2 100.0 7E-43 2.4E-47 298.6 3.5 102 139-240 10-111 (111)
6 3l2c_A Forkhead box protein O4 100.0 1.9E-37 6.3E-42 264.6 4.9 88 138-227 17-109 (110)
7 3coa_C Forkhead box protein O1 100.0 3E-37 1E-41 266.1 4.8 85 140-226 6-95 (117)
8 3bpy_A FORK head domain, forkh 100.0 6E-37 2.1E-41 250.8 5.0 79 142-222 2-85 (85)
9 1e17_A AFX; DNA binding domain 100.0 8.1E-37 2.8E-41 273.0 3.4 90 135-226 30-124 (150)
10 2a07_F Forkhead box protein P2 100.0 2.3E-37 7.9E-42 257.4 -0.9 77 143-224 1-77 (93)
11 3g73_A Forkhead box protein M1 100.0 9.6E-36 3.3E-40 264.0 4.4 96 140-238 13-110 (142)
12 1uhm_A Histone H1, histone HHO 81.7 1.2 4.1E-05 35.1 3.6 33 149-181 6-39 (78)
13 1uss_A Histone H1; DNA binding 81.4 1.5 5.1E-05 35.5 4.2 32 149-180 9-41 (88)
14 1hst_A Histone H5; chromosomal 77.6 1.9 6.6E-05 35.1 3.7 32 149-180 9-41 (90)
15 1ust_A Histone H1; DNA binding 73.8 2.6 8.8E-05 34.6 3.5 32 149-180 9-41 (93)
16 2rqp_A Heterochromatin protein 72.3 2.8 9.7E-05 33.6 3.4 34 149-182 11-45 (88)
17 2lso_A Histone H1X; structural 60.8 2.4 8.2E-05 34.0 0.0 34 147-180 5-39 (83)
18 1ghc_A GH1; chromosomal protei 32.9 6.8 0.00023 30.2 -0.7 30 149-178 5-35 (75)
19 4aw0_A HPDK1, 3-phosphoinositi 22.2 23 0.0008 33.9 0.7 39 150-191 261-301 (311)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=3.2e-44 Score=302.75 Aligned_cols=101 Identities=63% Similarity=1.154 Sum_probs=98.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEec
Q psy6883 143 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 222 (414)
Q Consensus 143 ~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLd 222 (414)
.+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 37999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CcchhcccCCceeecccccCC
Q psy6883 223 PMAEDMFDNGSFLRRRKRYKR 243 (414)
Q Consensus 223 P~ae~~f~~Gs~lRRRKR~kr 243 (414)
|+++++|++|.++|||+|+++
T Consensus 81 p~~~~~f~~g~~~rr~~~~~~ 101 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQKRFKL 101 (102)
T ss_dssp GGGCSTTCSSCSSSCSSCCCC
T ss_pred cCHHHHhhcCCeecccccccc
Confidence 999999999999999998875
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=3e-44 Score=300.53 Aligned_cols=97 Identities=95% Similarity=1.596 Sum_probs=94.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEecC
Q psy6883 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 223 (414)
Q Consensus 144 ~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLdP 223 (414)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccCCceeecccc
Q psy6883 224 MAEDMFDNGSFLRRRKR 240 (414)
Q Consensus 224 ~ae~~f~~Gs~lRRRKR 240 (414)
+++++|++|.|+|||+|
T Consensus 81 ~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred CHHHHHhCCCccCCCCC
Confidence 99999999999888875
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.4e-43 Score=298.00 Aligned_cols=98 Identities=58% Similarity=1.091 Sum_probs=73.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCC-CCceeEEec
Q psy6883 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNP-GKGNYWTLD 222 (414)
Q Consensus 144 ~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~p-GKGsyWtLd 222 (414)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++ |||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5899999999999999999999999999999999999999999999999999999999999999998888 999999999
Q ss_pred CcchhcccCCceeeccccc
Q psy6883 223 PMAEDMFDNGSFLRRRKRY 241 (414)
Q Consensus 223 P~ae~~f~~Gs~lRRRKR~ 241 (414)
|+++++|++|.++|||+|+
T Consensus 81 p~~~~~f~~g~~~rrr~r~ 99 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYRL 99 (100)
T ss_dssp C------------------
T ss_pred cCHHHHHhCCCcccCCCCC
Confidence 9999999999999888875
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=9.6e-44 Score=303.21 Aligned_cols=102 Identities=92% Similarity=1.564 Sum_probs=91.3
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEec
Q psy6883 143 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 222 (414)
Q Consensus 143 ~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLd 222 (414)
.+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+|+
T Consensus 1 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~ 80 (109)
T 2hfh_A 1 MVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 80 (109)
T ss_dssp CCCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhcccCCceeecccccCCC
Q psy6883 223 PMAEDMFDNGSFLRRRKRYKRT 244 (414)
Q Consensus 223 P~ae~~f~~Gs~lRRRKR~kr~ 244 (414)
|+++++|++|.++|||+++++-
T Consensus 81 p~~~~~f~~g~~~Rrr~~~~~~ 102 (109)
T 2hfh_A 81 PQSEDMFDNGSFLRRRKRFKRL 102 (109)
T ss_dssp TTCCHHHHSSSCC---------
T ss_pred ccHHHHHhCCCcccCccccccc
Confidence 9999999999999999887654
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=7e-43 Score=298.61 Aligned_cols=102 Identities=51% Similarity=0.934 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCcee
Q psy6883 139 GKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNY 218 (414)
Q Consensus 139 ~~~~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsy 218 (414)
+.....||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+|
T Consensus 10 ~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~ 89 (111)
T 2c6y_A 10 GRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSF 89 (111)
T ss_dssp ----CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcce
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEecCcchhcccCCceeecccc
Q psy6883 219 WTLDPMAEDMFDNGSFLRRRKR 240 (414)
Q Consensus 219 WtLdP~ae~~f~~Gs~lRRRKR 240 (414)
|+|+|+++++|++|.|+|||+|
T Consensus 90 W~l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 90 WRIDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp EEECHHHHHHHHHHHTCCCCCC
T ss_pred EEeChhHHHhhhcccccccCCC
Confidence 9999999999999999888765
No 6
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=1.9e-37 Score=264.58 Aligned_cols=88 Identities=40% Similarity=0.736 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccC-----CCccccccccccccccccccccCCCCC
Q psy6883 138 DGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCFVKIPREPGN 212 (414)
Q Consensus 138 ~~~~~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~-----~~GWQNSIRHNLSLNkcFvKVpR~~~~ 212 (414)
....+..||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+|+ +
T Consensus 17 ~~~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~ 94 (110)
T 3l2c_A 17 GGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--A 94 (110)
T ss_dssp ---CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--S
T ss_pred CccCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCC--C
Confidence 345567999999999999999999999999999999999999999986 479999999999999999999985 6
Q ss_pred CCCceeEEecCcchh
Q psy6883 213 PGKGNYWTLDPMAED 227 (414)
Q Consensus 213 pGKGsyWtLdP~ae~ 227 (414)
+|||+||+|||+++.
T Consensus 95 ~GKG~~W~l~p~~~~ 109 (110)
T 3l2c_A 95 TGKSSWWMLNPEGGK 109 (110)
T ss_dssp TTCCCEEEEC-----
T ss_pred CCCCceEEECccccC
Confidence 899999999998753
No 7
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=3e-37 Score=266.07 Aligned_cols=85 Identities=41% Similarity=0.718 Sum_probs=77.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCC-----CccccccccccccccccccccCCCCCCC
Q psy6883 140 KNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKF-----PAWQNSIRHNLSLNDCFVKIPREPGNPG 214 (414)
Q Consensus 140 ~~~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~-----~GWQNSIRHNLSLNkcFvKVpR~~~~pG 214 (414)
.....||||||++||+|||+++|+++|||+|||+||+++||||+.+. .|||||||||||||+||+||+++ ++|
T Consensus 6 s~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~--~~G 83 (117)
T 3coa_C 6 SRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNE--GTG 83 (117)
T ss_dssp -CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCS--STT
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccC--CCC
Confidence 45678999999999999999999999999999999999999999885 79999999999999999999985 689
Q ss_pred CceeEEecCcch
Q psy6883 215 KGNYWTLDPMAE 226 (414)
Q Consensus 215 KGsyWtLdP~ae 226 (414)
||+||+|||++.
T Consensus 84 Kg~~W~l~p~~~ 95 (117)
T 3coa_C 84 KSSWWMLNPEGG 95 (117)
T ss_dssp CCCEEEECC---
T ss_pred CcceEEECcccc
Confidence 999999999764
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=250.82 Aligned_cols=79 Identities=42% Similarity=0.765 Sum_probs=74.7
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccC-----CCccccccccccccccccccccCCCCCCCCc
Q psy6883 142 SIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 216 (414)
Q Consensus 142 ~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~-----~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKG 216 (414)
+..||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+|+ ++|||
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~~GKg 79 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--ATGKS 79 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--STTCC
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCC--CCCCC
Confidence 45899999999999999999999999999999999999999986 469999999999999999999985 68999
Q ss_pred eeEEec
Q psy6883 217 NYWTLD 222 (414)
Q Consensus 217 syWtLd 222 (414)
+||+||
T Consensus 80 ~~W~ld 85 (85)
T 3bpy_A 80 SWWMLN 85 (85)
T ss_dssp CEEEEC
T ss_pred CceecC
Confidence 999997
No 9
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=8.1e-37 Score=273.03 Aligned_cols=90 Identities=38% Similarity=0.715 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccC-----CCccccccccccccccccccccCC
Q psy6883 135 DKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCFVKIPRE 209 (414)
Q Consensus 135 ~~~~~~~~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~-----~~GWQNSIRHNLSLNkcFvKVpR~ 209 (414)
.++.......||||||++||+|||+++|+++|||+|||+||+++||||+++ ..|||||||||||||+||+||+|
T Consensus 30 ~~~~~~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r- 108 (150)
T 1e17_A 30 PRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN- 108 (150)
T ss_dssp -----CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC-
T ss_pred CccCCCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC-
Confidence 344556678999999999999999999999999999999999999999986 47999999999999999999998
Q ss_pred CCCCCCceeEEecCcch
Q psy6883 210 PGNPGKGNYWTLDPMAE 226 (414)
Q Consensus 210 ~~~pGKGsyWtLdP~ae 226 (414)
+++|||+||+|||+++
T Consensus 109 -~~~GKG~~W~ldp~~~ 124 (150)
T 1e17_A 109 -EATGKSSWWMLNPEGG 124 (150)
T ss_dssp -TTTSSSCEEEECTTCC
T ss_pred -CCCCCcceEEECcccc
Confidence 4789999999999874
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=2.3e-37 Score=257.44 Aligned_cols=77 Identities=43% Similarity=0.926 Sum_probs=73.5
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEec
Q psy6883 143 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 222 (414)
Q Consensus 143 ~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLd 222 (414)
.+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||++ |||+||+||
T Consensus 1 ~~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~ 75 (93)
T 2a07_F 1 IVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVD 75 (93)
T ss_dssp -CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEEC
Confidence 379999999999999999999999999999999999999999999999999999999999999974 799999999
Q ss_pred Cc
Q psy6883 223 PM 224 (414)
Q Consensus 223 P~ 224 (414)
|+
T Consensus 76 ~~ 77 (93)
T 2a07_F 76 EV 77 (93)
T ss_dssp HH
T ss_pred hH
Confidence 84
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.6e-36 Score=263.96 Aligned_cols=96 Identities=40% Similarity=0.757 Sum_probs=81.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCcc-CCCccccccccccccccccccccCCCCCCCCcee
Q psy6883 140 KNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYRE-KFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNY 218 (414)
Q Consensus 140 ~~~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~-~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsy 218 (414)
....+||||||++||+|||+++|+++|||+|||+||+++|||||. +..|||||||||||||+||+|+. +++|||+|
T Consensus 13 ~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GKg~~ 89 (142)
T 3g73_A 13 NSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGKVSF 89 (142)
T ss_dssp -CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSCCEE
T ss_pred ccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCCCce
Confidence 446789999999999999999999999999999999999999998 88999999999999999999864 46799999
Q ss_pred EEecCcchhcc-cCCceeecc
Q psy6883 219 WTLDPMAEDMF-DNGSFLRRR 238 (414)
Q Consensus 219 WtLdP~ae~~f-~~Gs~lRRR 238 (414)
|+|||+++..+ .++.|++.|
T Consensus 90 W~i~p~~~~~l~~d~~~k~~~ 110 (142)
T 3g73_A 90 WTIHPSANRYLTLDQVFKPLD 110 (142)
T ss_dssp EEECTTTCCCCCCC-------
T ss_pred EEECccccccchhhhhhcccc
Confidence 99999997654 555565444
No 12
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=81.70 E-value=1.2 Score=35.07 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCCC
Q psy6883 149 SYIALITMAILQ-SPHKKLTLSGICEFIMSRFPY 181 (414)
Q Consensus 149 SYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FPY 181 (414)
+|..||..||.. ...+..+++-|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 699999999986 445678999999999999763
No 13
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=81.41 E-value=1.5 Score=35.46 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCC
Q psy6883 149 SYIALITMAILQ-SPHKKLTLSGICEFIMSRFP 180 (414)
Q Consensus 149 SYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FP 180 (414)
+|..||..||.. ...+..+++-|..||+.+|+
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS 41 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 699999999997 44558899999999999976
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=77.62 E-value=1.9 Score=35.11 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhcC-CCCCCCHHHHHHHHHhcCC
Q psy6883 149 SYIALITMAILQS-PHKKLTLSGICEFIMSRFP 180 (414)
Q Consensus 149 SYaaLIa~AI~sS-P~kkLTLsEIYewI~~~FP 180 (414)
+|..||..||... ..+..+++-|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 6999999999974 4457899999999999976
No 15
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=73.83 E-value=2.6 Score=34.56 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCC
Q psy6883 149 SYIALITMAILQ-SPHKKLTLSGICEFIMSRFP 180 (414)
Q Consensus 149 SYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FP 180 (414)
+|..||..||.. ...+..+++-|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYP 41 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCC
Confidence 699999999997 44557899999999999965
No 16
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=72.29 E-value=2.8 Score=33.64 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=28.6
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCCCC
Q psy6883 149 SYIALITMAILQ-SPHKKLTLSGICEFIMSRFPYY 182 (414)
Q Consensus 149 SYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FPYY 182 (414)
+|..||..||.. ...+..+++-|..||+.+|+-+
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~ 45 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSL 45 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCC
Confidence 699999999985 3455789999999999998843
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=60.84 E-value=2.4 Score=34.02 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCC
Q psy6883 147 PYSYIALITMAILQ-SPHKKLTLSGICEFIMSRFP 180 (414)
Q Consensus 147 PySYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FP 180 (414)
|-+|..||..||.. ...+.-+++-|..+|..++.
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 34899999999986 34457789999999998874
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=32.94 E-value=6.8 Score=30.19 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=25.8
Q ss_pred CHHHHHHHHHhcC-CCCCCCHHHHHHHHHhc
Q psy6883 149 SYIALITMAILQS-PHKKLTLSGICEFIMSR 178 (414)
Q Consensus 149 SYaaLIa~AI~sS-P~kkLTLsEIYewI~~~ 178 (414)
+|..||..||... ..+..+++-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 5899999999974 44578999999999998
No 19
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=22.16 E-value=23 Score=33.93 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHH--HHHHHhcCCCCccCCCcccc
Q psy6883 150 YIALITMAILQSPHKKLTLSGI--CEFIMSRFPYYREKFPAWQN 191 (414)
Q Consensus 150 YaaLIa~AI~sSP~kkLTLsEI--YewI~~~FPYYr~~~~GWQN 191 (414)
-..||...|.-.|.+|+|..|+ +.||.+| |||+.- .|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~H-p~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKAH-PFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHTS-GGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHCC-CCcCCC--CHHH
Confidence 4579999999999999999998 6788764 999753 4764
Done!