Query psy6883
Match_columns 414
No_of_seqs 245 out of 866
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 20:56:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hdca_ a.4.5.14 (A:) Genesis 100.0 6.3E-42 4.6E-46 284.4 3.0 97 144-240 1-97 (97)
2 d2c6ya1 a.4.5.14 (A:1-98) Inte 100.0 2.9E-41 2.1E-45 280.9 3.5 97 144-240 2-98 (98)
3 d1d5va_ a.4.5.14 (A:) Adipocyt 100.0 2.3E-40 1.7E-44 273.7 5.6 93 143-235 2-94 (94)
4 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 100.0 1E-35 7.5E-40 237.1 4.9 74 150-223 1-75 (75)
5 d2a07f1 a.4.5.14 (F:503-584) F 100.0 9.9E-36 7.2E-40 240.7 -0.0 77 144-225 1-77 (82)
6 d3bpya1 a.4.5.14 (A:93-177) Af 100.0 2.7E-34 2E-38 233.7 4.9 79 142-222 2-85 (85)
7 d1ussa_ a.4.5.13 (A:) Histone 91.0 0.096 7E-06 40.8 4.1 35 147-181 7-42 (88)
8 d1hsta_ a.4.5.13 (A:) Histone 89.6 0.13 9.7E-06 38.6 3.7 32 149-180 4-36 (74)
9 d1usta_ a.4.5.13 (A:) Histone 89.4 0.1 7.3E-06 40.9 2.9 33 148-180 7-40 (92)
10 d1ghca_ a.4.5.13 (A:) Histone 71.4 0.28 2.1E-05 36.9 -0.8 31 149-179 5-36 (75)
11 d1mzba_ a.4.5.42 (A:) Ferric u 21.8 41 0.003 25.9 4.0 30 153-182 20-49 (134)
No 1
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=6.3e-42 Score=284.41 Aligned_cols=97 Identities=95% Similarity=1.596 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEecC
Q psy6883 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 223 (414)
Q Consensus 144 ~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLdP 223 (414)
+||||||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|+.+++|||+||+|+|
T Consensus 1 vKPp~sY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W~l~p 80 (97)
T d2hdca_ 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CCCCCcHHHHHHHHHHhCCCcCccHHHHHHHHHHhCccccCCCCCchhhhhhhcchhhhhcccCCCCCCCCCCcEEEECc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccCCceeecccc
Q psy6883 224 MAEDMFDNGSFLRRRKR 240 (414)
Q Consensus 224 ~ae~~f~~Gs~lRRRKR 240 (414)
++++.|++|.++|||||
T Consensus 81 ~~~~~~~~~~~~rrrkr 97 (97)
T d2hdca_ 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred cHHHHhhcCCccccCCC
Confidence 99999999999888875
No 2
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.9e-41 Score=280.87 Aligned_cols=97 Identities=52% Similarity=0.954 Sum_probs=93.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEecC
Q psy6883 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 223 (414)
Q Consensus 144 ~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLdP 223 (414)
.||||||++||+|||+++|+++|||+|||+||+++|||||.+..|||||||||||+|+||+||+|..+++|||+||+|+|
T Consensus 2 ~KP~~sY~~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~p 81 (98)
T d2c6ya1 2 SKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP 81 (98)
T ss_dssp CCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECH
T ss_pred CCCCccHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcchhhchhcccccceEeccCCCCCCCCCceEEECc
Confidence 79999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cchhcccCCceeecccc
Q psy6883 224 MAEDMFDNGSFLRRRKR 240 (414)
Q Consensus 224 ~ae~~f~~Gs~lRRRKR 240 (414)
++...|.++.++|||+|
T Consensus 82 ~~~~~~~~~~~~krr~r 98 (98)
T d2c6ya1 82 ASESKLIEQAFRKRRPR 98 (98)
T ss_dssp HHHHHHHHHHTCCCCCC
T ss_pred cHHhhhhcchhhccCCC
Confidence 99999999988777764
No 3
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.3e-40 Score=273.73 Aligned_cols=93 Identities=71% Similarity=1.295 Sum_probs=90.7
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEec
Q psy6883 143 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD 222 (414)
Q Consensus 143 ~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLd 222 (414)
++||||||++||++||+++|+++|||+|||+||+++|||||.+..|||||||||||+|+||+||+|..+++|||+||+|+
T Consensus 2 l~KP~~SYa~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gkg~~W~l~ 81 (94)
T d1d5va_ 2 LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLD 81 (94)
T ss_dssp CCCCSSCHHHHHHHHHHTCSSSSBCHHHHHHHHHHHCTHHHHCCTTHHHHHHHHHHHCSSEEECCCCTTSCSCCCCEEEC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHHCCccCccccchHHHHHHHccccceEEEcCcCCCCCCCCceEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhcccCCcee
Q psy6883 223 PMAEDMFDNGSFL 235 (414)
Q Consensus 223 P~ae~~f~~Gs~l 235 (414)
|++++.|++|.|+
T Consensus 82 p~~~~~f~~g~~~ 94 (94)
T d1d5va_ 82 PDSYNMFENGSFL 94 (94)
T ss_dssp CSCSSTTSCSSCC
T ss_pred ccHHHHHhcCCCC
Confidence 9999999999875
No 4
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=1e-35 Score=237.06 Aligned_cols=74 Identities=59% Similarity=1.167 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCC-CCceeEEecC
Q psy6883 150 YIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNP-GKGNYWTLDP 223 (414)
Q Consensus 150 YaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~p-GKGsyWtLdP 223 (414)
|++||+|||+++|+++|||+|||+||+++|||||.+..|||||||||||+|+||+||+|+.+++ |||+||+|||
T Consensus 1 Y~~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpy~r~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~~gKg~~W~l~P 75 (75)
T d1kq8a_ 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNP 75 (75)
T ss_dssp CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC
T ss_pred CHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCccchhHhhecccccceeEecCCCCCCCCCCccEEEeCc
Confidence 8999999999999999999999999999999999999999999999999999999999998887 9999999997
No 5
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=9.9e-36 Score=240.66 Aligned_cols=77 Identities=42% Similarity=0.908 Sum_probs=73.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEecC
Q psy6883 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 223 (414)
Q Consensus 144 ~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLdP 223 (414)
+||||||++||++||+++|+++|||+|||+||+++|||||.+..|||||||||||+|+||+||++ |||+||+|||
T Consensus 1 vKP~~sY~~LI~~Ai~~sp~~~LtL~eIy~~i~~~fpyyr~~~~gWkNSIRHnLS~n~~F~kv~~-----~kG~~W~i~~ 75 (82)
T d2a07f1 1 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 75 (82)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CcCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCcccchhHhHhcccccceEeCCC-----CCCCEEEECH
Confidence 59999999999999999999999999999999999999999999999999999999999999975 7999999998
Q ss_pred cc
Q psy6883 224 MA 225 (414)
Q Consensus 224 ~a 225 (414)
..
T Consensus 76 ~~ 77 (82)
T d2a07f1 76 VE 77 (82)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 6
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.7e-34 Score=233.67 Aligned_cols=79 Identities=42% Similarity=0.765 Sum_probs=73.6
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccC-----CCccccccccccccccccccccCCCCCCCCc
Q psy6883 142 SIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 216 (414)
Q Consensus 142 ~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~-----~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKG 216 (414)
+..||++||++||++||+++|+++|||+|||+||+++|||||.. ..|||||||||||+|+||+||+|+ .+|||
T Consensus 2 ~n~~~~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fPyyr~~~~~~~~~gWkNSIRHnLSl~~~F~kv~r~--~~gKg 79 (85)
T d3bpya1 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--ATGKS 79 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--STTCC
T ss_pred CCCCCCcCHHHHHHHHHHhCCCCCccHHHHHHHHHHhChhhhccCcccccccchhhHHHHhhHhhheeeCCCC--CCCCC
Confidence 35789999999999999999999999999999999999999965 468999999999999999999987 46999
Q ss_pred eeEEec
Q psy6883 217 NYWTLD 222 (414)
Q Consensus 217 syWtLd 222 (414)
+||+||
T Consensus 80 ~~W~i~ 85 (85)
T d3bpya1 80 SWWMLN 85 (85)
T ss_dssp CEEEEC
T ss_pred ceeecC
Confidence 999997
No 7
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.04 E-value=0.096 Score=40.75 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCCC
Q psy6883 147 PYSYIALITMAILQ-SPHKKLTLSGICEFIMSRFPY 181 (414)
Q Consensus 147 PySYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FPY 181 (414)
-.+|..||..||.. ...+..++..|-.||+.+|+.
T Consensus 7 ~~sy~~MI~eAI~~L~er~GsS~~aI~KyI~~~y~~ 42 (88)
T d1ussa_ 7 SLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSS 42 (88)
T ss_dssp SCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCCc
Confidence 45799999999997 445789999999999999984
No 8
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=89.62 E-value=0.13 Score=38.56 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCC
Q psy6883 149 SYIALITMAILQ-SPHKKLTLSGICEFIMSRFP 180 (414)
Q Consensus 149 SYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FP 180 (414)
+|..||..||.. ...+..++..|..||+.+|+
T Consensus 4 ~y~~MI~eAI~al~er~GsS~~AI~kyI~~~y~ 36 (74)
T d1hsta_ 4 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 36 (74)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCC
Confidence 599999999997 44567899999999999987
No 9
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.38 E-value=0.1 Score=40.91 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcCC
Q psy6883 148 YSYIALITMAILQ-SPHKKLTLSGICEFIMSRFP 180 (414)
Q Consensus 148 ySYaaLIa~AI~s-SP~kkLTLsEIYewI~~~FP 180 (414)
-+|..||..||.. ...+..++..|..||+.+||
T Consensus 7 pty~~MI~eAI~~l~er~GsS~~aI~KyI~~~y~ 40 (92)
T d1usta_ 7 KSYRELIIEGLTALKERKGSSRPALKKFIKENYP 40 (92)
T ss_dssp CCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHCc
Confidence 4699999999986 45567899999999999998
No 10
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=71.37 E-value=0.28 Score=36.93 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhc-CCCCCCCHHHHHHHHHhcC
Q psy6883 149 SYIALITMAILQ-SPHKKLTLSGICEFIMSRF 179 (414)
Q Consensus 149 SYaaLIa~AI~s-SP~kkLTLsEIYewI~~~F 179 (414)
+|..||..||.. ...+..++..|..||+.+|
T Consensus 5 ~y~~MI~eAI~al~er~GsS~~AI~kyI~~~~ 36 (75)
T d1ghca_ 5 SVTELITKAVSASKERKGLSLAALKKALAAGG 36 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSS
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHhc
Confidence 599999999986 5567889999999999875
No 11
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.79 E-value=41 Score=25.87 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhcCCCC
Q psy6883 153 LITMAILQSPHKKLTLSGICEFIMSRFPYY 182 (414)
Q Consensus 153 LIa~AI~sSP~kkLTLsEIYewI~~~FPYY 182 (414)
.|-.+|.++..+-+|..|||+.+.+..+-.
T Consensus 20 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i 49 (134)
T d1mzba_ 20 KILQMLDSAEQRHMSAEDVYKALMEAGEDV 49 (134)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCc
Confidence 456677777667799999999999988743
Done!