RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6883
(414 letters)
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 170 bits (433), Expect = 2e-53
Identities = 92/97 (94%), Positives = 94/97 (96%)
Query: 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 203
VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCF
Sbjct: 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 60
Query: 204 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 240
VKIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR
Sbjct: 61 VKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 163 bits (413), Expect = 2e-50
Identities = 66/93 (70%), Positives = 79/93 (84%)
Query: 143 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDC 202
+VKPPYSYIALITMAI +P KK+TL+GI +FIM RFP+YRE WQNSIRHNLSLN+C
Sbjct: 2 LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNEC 61
Query: 203 FVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFL 235
FVK+PR+ PGKG+YWTLDP + +MF+NGSFL
Sbjct: 62 FVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 162 bits (411), Expect = 4e-50
Identities = 50/96 (52%), Positives = 62/96 (64%)
Query: 145 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 204
KPPYSY LI AI +P K+LTL+GI I +PYYR WQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 205 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 240
K+PR PGKG++W +DP +E +F +RR R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 129 bits (327), Expect = 6e-38
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 13/95 (13%)
Query: 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 203
V+PP++Y LI AI++S ++LTL+ I + F Y+R W+N++RHNLSL+ CF
Sbjct: 1 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCF 60
Query: 204 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRR 238
V++ KG WT+D + + +RR
Sbjct: 61 VRVEN-----VKGAVWTVDEVE--------YQKRR 82
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 127 bits (321), Expect = 4e-37
Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 150 YIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPRE 209
YIALITMAI S +LTL+ I E++M +FP++R + W+NS+RHNLSLNDCFVK+ R+
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 210 PGNP-GKGNYWTLDP 223
P P GK NYW L+P
Sbjct: 61 PSRPWGKDNYWMLNP 75
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 124 bits (313), Expect = 7e-36
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 145 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKF-----PAWQNSIRHNLSL 199
SY LI+ AI +P K+LTL+ I E+++ PY+++K W+NSIRHNLSL
Sbjct: 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSL 64
Query: 200 NDCFVKIPREPGNPGKGNYWTLD 222
+ F+K+ E GK ++W L+
Sbjct: 65 HSKFIKVHNEA--TGKSSWWMLN 85
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia
coli [TaxId: 562]}
Length = 81
Score = 27.0 bits (59), Expect = 1.3
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 22 HHTGPRTSFDSPLDLR 37
T PLD+R
Sbjct: 66 SLNQRDTPLTLPLDIR 81
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium
album) [TaxId: 3559]}
Length = 81
Score = 26.4 bits (58), Expect = 1.9
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 348 KNEFEKSAEKLDSDSEHSISKDKCSAVFSIDSLIGKNEFEKSAEKLDSDSEHSIS 402
+ E+ ++ D++ + IS + + +E + ++D+D + IS
Sbjct: 5 IADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFIS 59
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 25.9 bits (57), Expect = 3.5
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 339 VFSIDSLIGKNEFEKSAEKLDSDSEH 364
S+ + + + E+L + H
Sbjct: 72 HISLTNFLDSGLYTSLTERLVAAQRH 97
Score = 25.9 bits (57), Expect = 3.5
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 374 VFSIDSLIGKNEFEKSAEKLDSDSEH 399
S+ + + + E+L + H
Sbjct: 72 HISLTNFLDSGLYTSLTERLVAAQRH 97
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640
{Mycobacterium leprae [TaxId: 1769]}
Length = 297
Score = 26.7 bits (58), Expect = 5.3
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 246 PDFLLRDPHAAAMASFLGSDPYHHGLLPHSLQHGGFSFMSPLPPAVPLLPPSELAR 301
PD L+RDP+A + + G+ +L S+ + + V + + R
Sbjct: 19 PDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAAMVEHMRSYQAVR 74
>d2fhzb1 d.243.1.2 (B:12-104) Colicin E5 {Escherichia coli [TaxId:
562]}
Length = 93
Score = 25.0 bits (54), Expect = 6.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 204 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRR--RKRYKRTPPDFLLRDPHAAAMASF 261
+KI ++ WT D + ++ NG+ ++ K+TPPD+L R+ A S
Sbjct: 1 LKIDQKIRGQMPERGWTEDDI-KNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSP 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.404
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,564,885
Number of extensions: 74414
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 13
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)