BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6885
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/268 (68%), Positives = 212/268 (79%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G KI V +E P++IPW+K+GAEY+VESTGVFTTIEKASAH GGAKKVIISAPSAD
Sbjct: 64 VVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD 123
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFVCGVNL+ Y KV+SNASCTTNCLAP+AKV+H+NFEIVEGLM
Sbjct: 124 APMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKT 183
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GRGAAQNIIP IP L+GKLTGMAFRVP NVSVVDLTV
Sbjct: 184 VDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTV 243
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RLGK+ +YD+IKA +KAA+EGPL G+LGYTED+VVS DF GD SSIFDA+AGI L+ F
Sbjct: 244 RLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTF 303
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VK++SWYDNE+GYS RV+DLIK++Q D
Sbjct: 304 VKVVSWYDNEFGYSQRVIDLIKHMQKVD 331
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/289 (66%), Positives = 210/289 (72%)
Query: 13 FSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIE 72
F D K T + V+NGN I + ERDP I W +GAEYVVESTGVFTT+E
Sbjct: 50 FQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTME 109
Query: 73 KASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHD 132
KA AHL GGAK+VIISAPSADAPMFV GVN + YD S K+ISNASCTTNCLAPLAKVIHD
Sbjct: 110 KAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHD 169
Query: 133 NFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNG 192
NF IVEGLM DGPSGKLWRDGRGA QNIIP IP LNG
Sbjct: 170 NFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNG 229
Query: 193 KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDF 252
KLTGMAFRVP ANVSVVDLT RL K A YD+IK VK A+EGPL GILGYTE +VVSSDF
Sbjct: 230 KLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDF 289
Query: 253 IGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
DTHSS FDA AGI LN FVKLISWYDNE+GYSNRVVDL+ ++ +K+
Sbjct: 290 NSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 338
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/268 (68%), Positives = 211/268 (78%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G KI V +E P++IPW+K+GAEY+VESTGVFTTIEKASAH GGAKKVIISAPSAD
Sbjct: 64 VVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD 123
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFVCGVNL+ Y KV+SNASCTTNCLAP+AKV+H+NFEIVEGLM
Sbjct: 124 APMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKT 183
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GRGAAQNIIP IP L+GKLTGMAFRVP NVSVVDLTV
Sbjct: 184 VDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTV 243
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RLGK+ +YD+IKA +K A+EGPL G+LGYTED+VVS DF GD SSIFDA+AGI L+ F
Sbjct: 244 RLGKECSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTF 303
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VK++SWYDNE+GYS RV+DLIK++Q D
Sbjct: 304 VKVVSWYDNEFGYSQRVIDLIKHMQKVD 331
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/268 (70%), Positives = 205/268 (76%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V+NGN I + ERDP I W +GAEYVVESTGVFTT+EKA AHL GGAK+VIISAPSAD
Sbjct: 68 VINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD 127
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFV GVN + YD S K+ISNASCTTNCLAPLAKVIHDNF IVEGLM
Sbjct: 128 APMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKT 187
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPSGKLWRDGRGA QNIIP IP LNGKLTGMAFRVP ANVSVVDLT
Sbjct: 188 VDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTC 247
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RL K A YD+IK VK A+EGPL GILGYTE +VVSSDF DTHSS FDA AGI LN F
Sbjct: 248 RLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHF 307
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VKLISWYDNE+GYSNRVVDL+ ++ +K+
Sbjct: 308 VKLISWYDNEFGYSNRVVDLMAHMASKE 335
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/268 (68%), Positives = 211/268 (78%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G KI V +E P++IPW+K+GAEY+VESTGVFTTIEKASAH GGAKKVIISAPSAD
Sbjct: 64 VVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD 123
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFVCGVNL+ Y KV+SNAS TTNCLAP+AKV+H+NFEIVEGLM
Sbjct: 124 APMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKT 183
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GRGAAQNIIP IP L+GKLTGMAFRVP NVSVVDLTV
Sbjct: 184 VDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTV 243
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RLGK+ +YD+IKA +KAA+EGPL G+LGYTED+VVS DF GD SSIFDA+AGI L+ F
Sbjct: 244 RLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTF 303
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VK++SWYDNE+GYS RV+DLIK++Q D
Sbjct: 304 VKVVSWYDNEFGYSQRVIDLIKHMQKVD 331
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 211/268 (78%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G KI V +E P++IPW+K+GAEY+VESTGVFTTIEKASAH GGAKKV+ISAPSAD
Sbjct: 65 VVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSAD 124
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFVCGVNL+ Y V+SNASCTTNCLAP+AKV+H+NFEIVEGLM
Sbjct: 125 APMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKT 184
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GRGAAQNIIP IP L+GKLTGMAFRVP +VSVVDLTV
Sbjct: 185 VDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTV 244
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RLGK+ +YD+IKA +K A+EGPL G LGYTED+VVSSDFIGD SSIFDA+AGI L+ F
Sbjct: 245 RLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTF 304
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VK++SWYDNE+GYS RV+DL+K++Q D
Sbjct: 305 VKVVSWYDNEFGYSQRVIDLLKHMQKVD 332
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 211/268 (78%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G KI V +E P++IPW+K+GAEY+VESTGVFTTIEKASAH GGAKKV+ISAPSAD
Sbjct: 64 VVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSAD 123
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFVCGVNL+ Y V+SNASCTTNCLAP+AKV+H+NFEIVEGLM
Sbjct: 124 APMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKT 183
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GRGAAQNIIP IP L+GKLTGMAFRVP +VSVVDLTV
Sbjct: 184 VDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSVVDLTV 243
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RLGK+ +YD+IKA +K A+EGPL G LGYTED+VVSSDFIGD SSIFDA+AGI L+ F
Sbjct: 244 RLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTF 303
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VK++SWYDNE+GYS RV+DL+K++Q D
Sbjct: 304 VKVVSWYDNEFGYSQRVIDLLKHMQKVD 331
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/289 (65%), Positives = 209/289 (72%)
Query: 13 FSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIE 72
F D K T + V+NG I + ERDP +I W +GAEYVVESTGVFTT+E
Sbjct: 44 FQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTME 103
Query: 73 KASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHD 132
KA AHL GGAK+VIISAPSADAPMFV GVN + YD S K++SNAS TTNCLAPLAKVIHD
Sbjct: 104 KAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHD 163
Query: 133 NFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNG 192
+F IVEGLM DGPSGKLWRDGRGAAQNIIP IP LNG
Sbjct: 164 HFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNG 223
Query: 193 KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDF 252
KLTGMAFRVP NVSVVDLT RL K A YD+IK VK A+EGPL GILGYTED+VVS DF
Sbjct: 224 KLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDF 283
Query: 253 IGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
DTHSS FDA AGI LN FVKLISWYDNE+GYSNRVVDL+ ++ +K+
Sbjct: 284 NSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 332
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 358 bits (918), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/268 (65%), Positives = 200/268 (74%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V++G I + ERDP++I W +G YVVESTGVFTT+EKA AHL GGAK+++ISAPSAD
Sbjct: 67 VIDGKAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRIVISAPSAD 126
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFV GVN Y S K+ISNASCTTNCLAPLAKVIHD+F IVEGLM
Sbjct: 127 APMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKT 186
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
D PSGKLWR GRGAAQN+IP IP L+GKLTGMAFRVP ANVSV+DLT
Sbjct: 187 VDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTC 246
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RL K A YD+IK VK A+EGPL GILGYTEDEVVS DF G HSSIFDA AGI LN F
Sbjct: 247 RLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAGIELNDTF 306
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VKL+SWYDNE+GYS RVVDL+ ++ +K+
Sbjct: 307 VKLVSWYDNEFGYSERVVDLMAHMASKE 334
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/269 (62%), Positives = 203/269 (75%), Gaps = 1/269 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+ ++I+V+ ++PK IPW G+ YVVESTGV+ +I+ AS H++ GA++V+ISAPS D
Sbjct: 71 VVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPD 130
Query: 94 APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
APMFV GVN + Y+P S ++SNASCTTNCLAPLAKVIH+ F IVEGLM
Sbjct: 131 APMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQK 190
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
DGPS K WRDGRGA QNIIP IP L GKLTGMAFRVP +VSVVDLT
Sbjct: 191 TVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLT 250
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
RL + A Y IK VKAAA+GP+AGIL YTEDEVVS+DF+GDTHSSIFDA+AGI LN
Sbjct: 251 CRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDN 310
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
FVKLISWYDNEYGYS+RVVDL++Y+ ++D
Sbjct: 311 FVKLISWYDNEYGYSHRVVDLLRYMFSRD 339
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 162/258 (62%), Positives = 197/258 (76%)
Query: 40 IAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVC 99
+ V R+P +IPWA++GAEYVVESTGVFT EKA+AHL GGAKKV+ISAPS DAPMFVC
Sbjct: 76 VTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVC 135
Query: 100 GVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSG 159
GVN D Y ++SNASCTTNCLAPLAKVIHDNF I+EGLM DGPS
Sbjct: 136 GVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSS 195
Query: 160 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDA 219
K WR GR A+ NIIP +P LNGKLTGM+FRVP +VSVVDLTVR+ K A
Sbjct: 196 KDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAA 255
Query: 220 TYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISW 279
+YD IK+ +K+A+EG L GI+GY E+++VS+DF+GD+ SSIFDA+AGI LN FVKL++W
Sbjct: 256 SYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAW 315
Query: 280 YDNEYGYSNRVVDLIKYI 297
YDNE+GYSNRV+DLI+++
Sbjct: 316 YDNEWGYSNRVIDLIRHM 333
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 341 bits (874), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 162/258 (62%), Positives = 197/258 (76%)
Query: 40 IAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVC 99
+ V R+P +IPWA++GAEYVVESTGVFT EKA+AHL GGAKKV+ISAPS DAPMFVC
Sbjct: 75 VTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVC 134
Query: 100 GVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPSG 159
GVN D Y ++SNASCTTNCLAPLAKVIHDNF I+EGLM DGPS
Sbjct: 135 GVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSS 194
Query: 160 KLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDA 219
K WR GR A+ NIIP +P LNGKLTGM+FRVP +VSVVDLTVR+ K A
Sbjct: 195 KDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAA 254
Query: 220 TYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISW 279
+YD IK+ +K+A+EG L GI+GY E+++VS+DF+GD+ SSIFDA+AGI LN FVKL++W
Sbjct: 255 SYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAW 314
Query: 280 YDNEYGYSNRVVDLIKYI 297
YDNE+GYSNRV+DLI+++
Sbjct: 315 YDNEWGYSNRVIDLIRHM 332
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 330 bits (847), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 164/269 (60%), Positives = 198/269 (73%), Gaps = 1/269 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+ +I V ++PK+IPW+ G YVVE+TGV+ +IE AS H++ GA++VI++APS D
Sbjct: 65 VVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPD 124
Query: 94 APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
APM V GVN Y+P S V+SNAS TTNCLAPLAKVIH+ F IVEGLM
Sbjct: 125 APMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHAYTATQK 184
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
DGPS K WR GRGA QNIIP IP LNGKLTGMAFRVP NVSVVDLT
Sbjct: 185 TVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLT 244
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
RL + A+Y IK VKAAA+GP+AGIL YTED+VVS+DF GD+HSSIFDA+AGI LN
Sbjct: 245 CRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDN 304
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
FVKL+SWYDNEYGYS+RVVDL++Y+ +++
Sbjct: 305 FVKLVSWYDNEYGYSHRVVDLLRYMFSRE 333
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 330 bits (846), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 191/264 (72%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G KIA + ERDP ++PW S + ++STGVF ++ A H+ GAKKV+I+APS+
Sbjct: 66 IVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSST 125
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFV GVN + Y K++SNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 126 APMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQKT 185
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GR A+ NIIP +P L GKLTGMAFRVP +VSVVDLTV
Sbjct: 186 VDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTV 245
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
+L K+ TYDEIK VKAAAEG L G+LGYTED VVSSDF+GD+HSSIFDA AGI L+ KF
Sbjct: 246 KLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKF 305
Query: 274 VKLISWYDNEYGYSNRVVDLIKYI 297
VKL+SWYDNEYGYS RVVDL++++
Sbjct: 306 VKLVSWYDNEYGYSTRVVDLVEHV 329
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 330 bits (845), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 159/264 (60%), Positives = 191/264 (72%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G KIA + ERDP ++PW S + ++STGVF ++ A H+ GAKKV+I+APS+
Sbjct: 74 IVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSST 133
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFV GVN + Y K++SNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 134 APMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQKT 193
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GR A+ NIIP +P L GKLTGMAFRVP +VSVVDLTV
Sbjct: 194 VDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTV 253
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
+L K+ TYDEIK VKAAAEG L G+LGYTED VVSSDF+GD+HSSIFDA AGI L+ KF
Sbjct: 254 KLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKF 313
Query: 274 VKLISWYDNEYGYSNRVVDLIKYI 297
VKL+SWYDNEYGYS RVVDL++++
Sbjct: 314 VKLVSWYDNEYGYSTRVVDLVEHV 337
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 318 bits (814), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 155/264 (58%), Positives = 189/264 (71%), Gaps = 1/264 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
++NG K+AV E+DP +PW K G + V+STGVF ++ A H+ GAKKV+I+APS
Sbjct: 79 IINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVITAPSKT 138
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
APMFV GVN D Y+ K++SNASCTTNCLAP+AK+I+D F I EGLM
Sbjct: 139 APMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTVHSITATQKT 197
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
DGPS K WR GR A+ NIIP +P L GKLTGMAFRVP +VSVVDLTV
Sbjct: 198 VDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTTDVSVVDLTV 257
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
+L K ATYDEIKA VK +EG L ++GYTED VVSSDF+GDTHS+IFDA AGI L+ KF
Sbjct: 258 KLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKF 317
Query: 274 VKLISWYDNEYGYSNRVVDLIKYI 297
VKL++WYDNEYGYS RVVDL++++
Sbjct: 318 VKLVAWYDNEYGYSTRVVDLVEHV 341
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 317 bits (813), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/265 (59%), Positives = 190/265 (71%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+++ PS D
Sbjct: 66 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD 125
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PMFV G N D Y ++SNASCTTNCLAPLAKVI+DNF I+EGLM
Sbjct: 126 NTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQK 184
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
DGPS K WR GRGA+QNIIP +P LNGKLTGMAFRVP NVSVVDLT
Sbjct: 185 TVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLT 244
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
VRL K ATY++IKA VKAAAEG + G+LGYTED+VVS+DF G+ +S+FDA+AGI LN
Sbjct: 245 VRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDN 304
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
FVKL+SWYDNE GYSN+V+DLI +I
Sbjct: 305 FVKLVSWYDNETGYSNKVLDLIAHI 329
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 317 bits (813), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 158/265 (59%), Positives = 190/265 (71%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+++ PS D
Sbjct: 65 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD 124
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PMFV G N D Y ++SNASCTTNCLAPLAKVI+DNF I+EGLM
Sbjct: 125 NTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQK 183
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
DGPS K WR GRGA+QNIIP +P LNGKLTGMAFRVP NVSVVDLT
Sbjct: 184 TVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLT 243
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
VRL K ATY++IKA VKAAAEG + G+LGYTED+VVS+DF G+ +S+FDA+AGI LN
Sbjct: 244 VRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDN 303
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
FVKL+SWYDNE GYSN+V+DLI +I
Sbjct: 304 FVKLVSWYDNETGYSNKVLDLIAHI 328
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 189/265 (71%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+++ PS D
Sbjct: 65 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD 124
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PMFV G N D Y ++SNASCTTNCLAPLAKVI+DNF I+EGLM
Sbjct: 125 NTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQK 183
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
DGPS K WR GRGA+QNIIP +P LNGKLTGMAFRVP NVSVVDLT
Sbjct: 184 TVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLT 243
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
VRL K ATY++IKA VKAAAEG + G+LGYTED+VVS+DF G+ +S+FDA+AGI LN
Sbjct: 244 VRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDN 303
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
FVKL+SWYD E GYSN+V+DLI +I
Sbjct: 304 FVKLVSWYDTETGYSNKVLDLIAHI 328
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 315 bits (806), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 189/265 (71%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+++ PS D
Sbjct: 66 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD 125
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PMFV G N D Y ++SNAS TTNCLAPLAKVI+DNF I+EGLM
Sbjct: 126 NTPMFVKGANFDKY-AGQDIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQK 184
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
DGPS K WR GRGA+QNIIP +P LNGKLTGMAFRVP NVSVVDLT
Sbjct: 185 TVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLT 244
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
VRL K ATY++IKA VKAAAEG + G+LGYTED+VVS+DF G+ +S+FDA+AGI LN
Sbjct: 245 VRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVXTSVFDAKAGIALNDN 304
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
FVKL+SWYDNE GYSN+V+DLI +I
Sbjct: 305 FVKLVSWYDNETGYSNKVLDLIAHI 329
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 310 bits (793), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 164/270 (60%), Positives = 186/270 (68%), Gaps = 4/270 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD- 93
+NG + V +DP +IPW SGA+ V ESTGVFTT EKAS HL GGAKKVIISAP D
Sbjct: 83 INGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDN 142
Query: 94 APMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PM+V GVN YDPS F VISNASCTTNCLAPLAK+I+D F IVEGLM
Sbjct: 143 VPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQL 202
Query: 153 XXDGPS--GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVD 210
DGPS GK WR GR A NIIP IPALNGKLTGMA RVP +VSVVD
Sbjct: 203 TVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVD 262
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
LT +L K A+ +EI VK A+ GP+ GI+GYT D+VVS+DFIG +SSIFD A I LN
Sbjct: 263 LTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALN 322
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
FVKLISWYDNE GYSNR+VDL Y+ ++
Sbjct: 323 DSFVKLISWYDNESGYSNRLVDLAVYVASR 352
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 309 bits (792), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 164/270 (60%), Positives = 186/270 (68%), Gaps = 4/270 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD- 93
+NG + V +DP +IPW SGA+ V ESTGVFTT EKAS HL GGAKKVIISAP D
Sbjct: 88 INGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDN 147
Query: 94 APMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PM+V GVN YDPS F VISNASCTTNCLAPLAK+I+D F IVEGLM
Sbjct: 148 VPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQL 207
Query: 153 XXDGPS--GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVD 210
DGPS GK WR GR A NIIP IPALNGKLTGMA RVP +VSVVD
Sbjct: 208 TVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVD 267
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
LT +L K A+ +EI VK A+ GP+ GI+GYT D+VVS+DFIG +SSIFD A I LN
Sbjct: 268 LTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALN 327
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
FVKLISWYDNE GYSNR+VDL Y+ ++
Sbjct: 328 DSFVKLISWYDNESGYSNRLVDLAVYVASR 357
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 304 bits (778), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 185/265 (69%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+ + PS D
Sbjct: 65 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVXTGPSKD 124
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
P FV G N D Y ++SNASCTTNCLAPLAKVI+DNF I+EGL
Sbjct: 125 NTPXFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHATTATQK 183
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
DGPS K WR GRGA+QNIIP +P LNGKLTG AFRVP NVSVVDLT
Sbjct: 184 TVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNVSVVDLT 243
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
VRL K ATY++IKA VKAAAEG G+LGYTED+VVS+DF G+ +S+FDA+AGI LN
Sbjct: 244 VRLEKAATYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDN 303
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
FVKL+SWYDNE GYSN+V+DLI +I
Sbjct: 304 FVKLVSWYDNETGYSNKVLDLIAHI 328
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 303 bits (777), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 162/270 (60%), Positives = 184/270 (68%), Gaps = 4/270 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD- 93
+NG + V +DP +IPW SGA+ V ESTGVFTT EKAS HL GGAKKVIISAP D
Sbjct: 88 INGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDN 147
Query: 94 APMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PM+V GVN YDPS F VISNAS TTNCLAPLAK+I+D F IVEGLM
Sbjct: 148 VPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQL 207
Query: 153 XXDGPS--GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVD 210
DGPS GK WR GR A NIIP IPALNGKLTGMA RVP +VSVVD
Sbjct: 208 TVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVD 267
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
LT +L K A+ +EI VK A+ GP+ GI+GYT D+VVS+DFIG +SSI D A I LN
Sbjct: 268 LTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSILDKNACIALN 327
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
FVKLISWYDNE GYSNR+VDL Y+ ++
Sbjct: 328 DSFVKLISWYDNESGYSNRLVDLAVYVASR 357
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/269 (57%), Positives = 183/269 (68%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SA 92
++ K++V +E+DP IPW K + V ESTGVF T E AS+HL GGAKKVI+SAP
Sbjct: 76 LIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKD 135
Query: 93 DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
D P++V G+N YD ++SNASCTTNCLAPLAKVI+D F IVEGLM
Sbjct: 136 DTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQL 195
Query: 153 XXDGPS--GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVD 210
DGPS GK WR GR A NIIP +P LNGKLTG+AFRVP+ VSVVD
Sbjct: 196 VVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVD 255
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
L RL K A Y+E+ ++K AAEGPL GILGYTEDEVVS DF+ D SSIFD +AG+ LN
Sbjct: 256 LVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLALN 315
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQT 299
F KL+SWYDNE+GYSNRV+DL +I T
Sbjct: 316 DNFFKLVSWYDNEWGYSNRVLDLAVHITT 344
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 301 bits (770), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 182/267 (68%), Gaps = 3/267 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SA 92
++ K++V +E+DP IPW K + V ESTGVF T E AS+HL GGAKKVI+SAP
Sbjct: 68 LIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKD 127
Query: 93 DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
D P++V G+N YD ++SNASCTTNCLAPLAKVI+D F IVEGLM
Sbjct: 128 DTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQL 187
Query: 153 XXDGPS--GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVD 210
DGPS GK WR GR A NIIP +P LNGKLTG+AFRVP+ VSVVD
Sbjct: 188 VVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVD 247
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
L RL K A Y+E+ ++K AAEGPL GILGYTEDEVVS DF+ D SSIFD +AG+ LN
Sbjct: 248 LVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLALN 307
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYI 297
F KL+SWYDNE+GYSNRV+DL +I
Sbjct: 308 DNFFKLVSWYDNEWGYSNRVLDLAVHI 334
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/272 (56%), Positives = 186/272 (68%), Gaps = 4/272 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V G + V +E++P IPW ++G Y+ ESTG+F T EKA AHL GAKKVI+SAP D
Sbjct: 88 IVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVIMSAPPKD 147
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
PMFV GVN D Y S ++SNASCTTNCLAPLAK++HD F IVEGLM
Sbjct: 148 DTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMTTVHAMTANQL 207
Query: 153 XXDGPS--GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVD 210
DGPS GK WR GR A NIIP IP+LNGKLTGMAFRVPV +VSVVD
Sbjct: 208 TVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFRVPVPDVSVVD 267
Query: 211 LTVRLGKDATYDEIKAKVK-AAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPL 269
LT +L K A Y++I A VK AA GP+ GI+ YT++EVVSSDF+ SS+FD AGI L
Sbjct: 268 LTCKLAKPAKYEDIVAAVKEAATSGPMKGIISYTDEEVVSSDFVHCKFSSVFDINAGIML 327
Query: 270 NGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
N FVKL+SWYDNE+GYSNR+V+L Y+ +D
Sbjct: 328 NDTFVKLVSWYDNEWGYSNRLVELAHYMSVQD 359
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 182/276 (65%), Gaps = 8/276 (2%)
Query: 34 VVNGNKI-AVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
VVNG++I V ++R+P D+PW K G EYV+ESTG+FT A HL GGA+KV+ISAP S
Sbjct: 79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPAS 138
Query: 92 ADAPMFVCGVNLDAYDPSFK-VISNASCTTNCLAPLAKV-IHDNFEIVEGLMXXXXXXXX 149
A FV GVN + Y+P + V+SNASCTTNCLAPL V + + F I GLM
Sbjct: 139 GGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEGFGISTGLMTTVHSYTA 198
Query: 150 XXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVV 209
DG S K WR GR AA NIIP IP+ GKLTGMAFRVP A+VSVV
Sbjct: 199 TQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGKLTGMAFRVPTADVSVV 258
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQA---- 265
DLT +D + EI A +K A++ + ILGYT++E+VS+DFI D+ SSI+D++A
Sbjct: 259 DLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQN 318
Query: 266 GIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
+P +F K++SWYDNE+GYS+RVVDL++++ +D
Sbjct: 319 NLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMAARD 354
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 137/276 (49%), Positives = 180/276 (65%), Gaps = 8/276 (2%)
Query: 34 VVNGNKI-AVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
VVNG++I V ++R+P D+PW K G EYV+ESTG+FT A HL GGA+KV+ISAP S
Sbjct: 79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS 138
Query: 92 ADAPMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKV-IHDNFEIVEGLMXXXXXXXX 149
A V GVN Y+PS V+SNASCTTNCLAP+ V + + F + GLM
Sbjct: 139 GGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTA 198
Query: 150 XXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVV 209
DG S K WR GR AA NIIP IP+ GKLTGM+FRVP +VSVV
Sbjct: 199 TQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVV 258
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQA---- 265
DLT +D + EI A +K A++ + GILGYT++E+VS+DFI D SSI+D++A
Sbjct: 259 DLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQN 318
Query: 266 GIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
+P +F K++SWYDNE+GYS+RVVDL++++ +KD
Sbjct: 319 NLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASKD 354
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 263 bits (672), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 174/269 (64%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG +I V +ERDP+++ W + G + VVESTG FT E A+ HL GAKKVIISAP+ +
Sbjct: 65 VVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 124
Query: 94 APM-FVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ V GVN D YDP + VISNASCTTNCLAP AKV+H+ F IV G+M
Sbjct: 125 EDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 184
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D P L R R AA++IIP +P L GKL GMA RVP NVSVVDL
Sbjct: 185 RILDLPHKDLRR-ARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDL 243
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
L K+ T +E+ A +KAAAEG L GIL Y+E+ +VS D+ G T SS DA + + ++G
Sbjct: 244 VAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDG 303
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
K VK++SWYDNE GYS+RVVDL YI +K
Sbjct: 304 KMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 263 bits (672), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 179/276 (64%), Gaps = 8/276 (2%)
Query: 34 VVNGNKI-AVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
VVNG++I V ++R+P D+PW K G +YV+ESTG+FT KA H+ GGAKKV+ISAP S
Sbjct: 79 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPAS 138
Query: 92 ADAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVI-HDNFEIVEGLMXXXXXXXX 149
A V GVN Y P S V+SNASCTTNCLAP+ V+ +NF I GLM
Sbjct: 139 GGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKENFGIETGLMTTIHSYTA 198
Query: 150 XXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVV 209
DG S K WR GR AA NIIP IP+ GKLTGM+FRVP +VSVV
Sbjct: 199 TQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVV 258
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQA---- 265
DLT R +D + EI +K AA+ + GILG+T++E+VS+DFI D SS++D++A
Sbjct: 259 DLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFINDNRSSVYDSKATLQN 318
Query: 266 GIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
+P +F K++SWYDNE+ YS+RVVDL++Y+ KD
Sbjct: 319 NLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKD 354
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 179/276 (64%), Gaps = 8/276 (2%)
Query: 34 VVNGNKI-AVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
VVNG++I V ++R+P D+PW K G +YV+ESTG+FT KA H+ GGAKKV+ISAP S
Sbjct: 79 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPAS 138
Query: 92 ADAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVI-HDNFEIVEGLMXXXXXXXX 149
A V GVN Y P S V+SNASCTTNCLAP+ V+ +NF I GLM
Sbjct: 139 GGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKENFGIETGLMTTIHSYTA 198
Query: 150 XXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVV 209
DG S K WR GR AA NIIP IP+ GKLTGM+FRVP +VSVV
Sbjct: 199 TQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVV 258
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQA---- 265
DLT R +D + EI +K AA+ + GILG+T++E+VS+DFI D SS++D++A
Sbjct: 259 DLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFINDNRSSVYDSKATLQN 318
Query: 266 GIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
+P +F K++SWYDNE+ YS+RVVDL++Y+ KD
Sbjct: 319 NLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKD 354
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 262 bits (670), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 174/269 (64%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG +I V +ERDP+++ W + G + VVESTG FT E A+ HL GAKKVIISAP+ +
Sbjct: 65 VVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 124
Query: 94 APM-FVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ V GVN D YDP + VISNASCTTNCLAP AKV+H+ F IV G+M
Sbjct: 125 EDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 184
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D S K R R AA++IIP +P L GKL GMA RVP NVSVVDL
Sbjct: 185 RILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDL 243
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
L K+ T +E+ A +KAAAEG L GIL Y+E+ +VS D+ G T SS DA + + ++G
Sbjct: 244 VAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDG 303
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
K VK++SWYDNE GYS+RVVDL YI +K
Sbjct: 304 KMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 174/269 (64%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG +I V +ERDP+++ W + G + VVESTG FT E A+ HL GAKKVIISAP+ +
Sbjct: 65 VVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 124
Query: 94 APM-FVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ V GVN D YDP + VISNASCTTNCLAP AKV+H+ F IV G+M
Sbjct: 125 EDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 184
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D S K R R AA++IIP +P L GKL GMA RVP NVSVVDL
Sbjct: 185 RILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDL 243
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
L K+ T +E+ A +KAAAEG L GIL Y+E+ +VS D+ G T SS DA + + ++G
Sbjct: 244 VAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDG 303
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
K VK++SWYDNE GYS+RVVDL YI +K
Sbjct: 304 KMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 173/269 (64%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG +I V +ERDP+++ W + G + VVESTG FT E A+ HL GAKKVIISAP+ +
Sbjct: 65 VVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 124
Query: 94 APM-FVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ V GVN D YDP + VISNAS TTNCLAP AKV+H+ F IV G+M
Sbjct: 125 EDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 184
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D P L R R AA++IIP +P L GKL GMA RVP NVSVVDL
Sbjct: 185 RILDLPHKDLRR-ARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDL 243
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
L K+ T +E+ A +KAAAEG L GIL Y+E+ +VS D+ G T SS DA + + ++G
Sbjct: 244 VAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDG 303
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
K VK++SWYDNE GYS+RVVDL YI +K
Sbjct: 304 KMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 173/269 (64%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG +I V +ERDP+++ W + G + VVESTG FT E A+ HL GAKKVIISAP+ +
Sbjct: 65 VVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 124
Query: 94 APM-FVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ V GVN D YDP + VISNAS TTNCLAP AKV+H+ F IV G+M
Sbjct: 125 EDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 184
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D P L R R AA++IIP +P L GKL GMA RVP NVSVVDL
Sbjct: 185 RILDLPHKDLRR-ARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDL 243
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
L K+ T +E+ A +KAAAEG L GIL Y+E+ +VS D+ G T SS DA + + ++G
Sbjct: 244 VAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDG 303
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
K VK++SWYDNE GYS+RVVDL YI +K
Sbjct: 304 KMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/276 (49%), Positives = 179/276 (64%), Gaps = 8/276 (2%)
Query: 34 VVNGNKI-AVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
VVNG++I V ++R+P D+PW K G EYV+ESTG+FT A HL GGA+KV+ISAP S
Sbjct: 79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS 138
Query: 92 ADAPMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKV-IHDNFEIVEGLMXXXXXXXX 149
A V GVN Y+PS V+SNAS TTNCLAP+ V + + F + GLM
Sbjct: 139 GGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTA 198
Query: 150 XXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVV 209
DG S K WR GR AA NIIP IP+ GKLTGM+FRVP +VSVV
Sbjct: 199 TQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVV 258
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQA---- 265
DLT +D + EI A +K A++ + GILGYT++E+VS+DFI D SSI+D++A
Sbjct: 259 DLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQN 318
Query: 266 GIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
+P +F K++SWYDNE+GYS+RVVDL++++ +KD
Sbjct: 319 NLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASKD 354
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/268 (48%), Positives = 168/268 (62%), Gaps = 4/268 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA 94
V+G I + +DPK+IPWA++G V+ESTGVFT +KA AHL GGAKKVII+AP+
Sbjct: 64 VDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGE 123
Query: 95 PM-FVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
+ V GVN +AYDPS +ISNASCTTN LAP+ KV+ + F + + LM
Sbjct: 124 DITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQR 183
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P L R R AA NIIP +P+L G+ GMA RVP A S+ D+T
Sbjct: 184 LLDLPHKDL-RRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDIT 242
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
L ++ T +E+ A +KAAAEGPL GIL YTEDE+V D + D HSSI DA+ L G
Sbjct: 243 ALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL-GN 301
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+ +WYDNE+GY+NRV DL++ + K
Sbjct: 302 MVKVFAWYDNEWGYANRVADLVELVLRK 329
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/268 (48%), Positives = 167/268 (62%), Gaps = 4/268 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA 94
V+G I + +DPK+IPWA++G V+ESTGVFT +KA AHL GGAKKVII+AP+
Sbjct: 64 VDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGE 123
Query: 95 PM-FVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
+ V GVN +AYDPS +ISNAS TTN LAP+ KV+ + F + + LM
Sbjct: 124 DITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQR 183
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P L R R AA NIIP +P+L G+ GMA RVP A S+ D+T
Sbjct: 184 LLDLPHKDL-RRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDIT 242
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
L ++ T +E+ A +KAAAEGPL GIL YTEDE+V D + D HSSI DA+ L G
Sbjct: 243 ALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL-GN 301
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+ +WYDNE+GY+NRV DL++ + K
Sbjct: 302 MVKVFAWYDNEWGYANRVADLVELVLRK 329
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 159/265 (60%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G +I V +E DP +PW G ++V+ESTGVF EKA HL GAKKVII+AP+
Sbjct: 66 IVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKG 125
Query: 94 APM-FVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
+ V G N D P +IS ASCTTN +AP+ KV+H+ F IV G++
Sbjct: 126 EDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQR 185
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P L R R AA NIIP +P + GKL GMA RVP + S+ DLT
Sbjct: 186 VLDLPHKDLRR-ARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLT 244
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
V + K+ T +E+ A +K A EG L GI+GY ++ +VSSD IG T S IFDA + GK
Sbjct: 245 VLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGK 304
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
VK+ SWYDNEYGYSNRVVD ++ +
Sbjct: 305 LVKVASWYDNEYGYSNRVVDTLELL 329
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/275 (46%), Positives = 169/275 (61%), Gaps = 15/275 (5%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAG--------GAKKV 85
VV+G +I + +ERDPK++PWAK G + V+ESTGVF++ A++ G GAKKV
Sbjct: 84 VVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSS---ATSDKGGYLDHVNHAGAKKV 140
Query: 86 IISAPSADA-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXX 144
I++ P+ D V GVN + K +SNASCTTNCLAPLAKV+H++F I +GLM
Sbjct: 141 ILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTV 200
Query: 145 XXXXXXXXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVA 204
D P L R R AA +IIP +P L GKL G + RVPV
Sbjct: 201 HAYTNDQRILDLPHSDLRR-ARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVP 259
Query: 205 NVSVVDLTVRLGK-DATYDEIKAKVKAAAEGP-LAGILGYTEDEVVSSDFIGDTHSSIFD 262
S+VDLTV+L K D T +EI + ++ A+E P L GILGYTED +VSSD G++HSSI D
Sbjct: 260 TGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVD 319
Query: 263 AQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYI 297
+ L F K++SWYDNE+GYS RVVDL + +
Sbjct: 320 GLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKL 354
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/268 (45%), Positives = 163/268 (60%), Gaps = 4/268 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA 94
V+G I + +DP++IPW ++G VVESTGVFT EKA AHL GAKKVII+AP+ +
Sbjct: 64 VDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVIITAPAKNE 123
Query: 95 PM-FVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 152
+ V GVN + YDP+ ++SNASCTTN LAP+ KV+ F + + LM
Sbjct: 124 DITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVHSYTNDQR 183
Query: 153 XXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P L R R AA NIIP +P+L G+ GMA RVP S+ D+T
Sbjct: 184 LLDLPHKDL-RRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPTGSISDIT 242
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
L ++ T +E+ A +KAAAEGPL GIL YTEDE+V D + D HSSI D + + G
Sbjct: 243 ALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKLTKAI-GN 301
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+ +WYDNE+GY+NRV DL++ + K
Sbjct: 302 LVKVFAWYDNEWGYANRVADLVELVLKK 329
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 213 bits (543), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 156/262 (59%), Gaps = 6/262 (2%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA- 92
VVNG++I V + R+P ++PW + G + V+E TG FT+ EKASAHL GGAKKVIISAP
Sbjct: 77 VVNGDRIRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKKVIISAPGGK 136
Query: 93 --DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 150
DA + V GVN D VISNASCTTNCLAPL K ++D + GLM
Sbjct: 137 DVDATI-VYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMTTIHAYTND 195
Query: 151 XXXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVD 210
D L R R A + IP +P LNGKL G A RVP NVS+VD
Sbjct: 196 QVLTDVYHEDL-RRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVPTINVSIVD 254
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
L+ +D T E+ A +K A+EG L GILGY E +VS DF + SS FDA ++
Sbjct: 255 LSFIAKRDTTAAEVNAIMKEASEGALKGILGYNEAPLVSIDFNHNPASSTFDATL-TKVS 313
Query: 271 GKFVKLISWYDNEYGYSNRVVD 292
G+ VK+ SWYDNE+G+SNR++D
Sbjct: 314 GRLVKVSSWYDNEWGFSNRMLD 335
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 155/254 (61%), Gaps = 2/254 (0%)
Query: 40 IAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVC 99
I VH+ R+P ++PW + + +E TG+FT+ +KA+ HL GAK+VI+SAP+ A + V
Sbjct: 74 IKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVV 133
Query: 100 -GVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPS 158
GVN D VISNASCTTNCLAP+A+V++D I +G M D
Sbjct: 134 YGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTMH 193
Query: 159 GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTVRLGKD 218
L+R R AA ++IP +P L GKL G+A RVP NVSVVDLT ++
Sbjct: 194 KDLYR-ARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRE 252
Query: 219 ATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLIS 278
T +E+ ++ AA G L GILGYT++++VS DF D+HSS+F ++G V+++S
Sbjct: 253 TTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQTKVMDGTMVRILS 312
Query: 279 WYDNEYGYSNRVVD 292
WYDNE+G+S+R+ D
Sbjct: 313 WYDNEWGFSSRMSD 326
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 148/254 (58%), Gaps = 2/254 (0%)
Query: 40 IAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVC 99
I V +ERDP +PW + +E TG+FT +KASAHL GAK+V++SAPS A + V
Sbjct: 95 IKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKRVLVSAPSEGADLTVV 154
Query: 100 -GVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXDGPS 158
GVN VISNASCTTNCLAP+A+V+H+ I +G M D
Sbjct: 155 YGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGFMTTIHSYTGDQPVLDTMH 214
Query: 159 GKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTVRLGKD 218
L+R R AA ++IP +P L G L G++ RVP NVSVVDLT +
Sbjct: 215 RDLYR-ARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPTPNVSVVDLTFTAKRS 273
Query: 219 ATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLIS 278
T +EI ++ AA+G L GIL YT++++VS DF + HS+IF ++G+ +++
Sbjct: 274 TTIEEINTAIRTAAQGSLKGILDYTDEKLVSCDFNHNPHSAIFHNDQTKVIDGQLCRVLV 333
Query: 279 WYDNEYGYSNRVVD 292
WYDNE+G+SNR+ D
Sbjct: 334 WYDNEWGFSNRMCD 347
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 200 bits (508), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 119/280 (42%), Positives = 163/280 (58%), Gaps = 18/280 (6%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G +I V +++DP IPW G + V+E+TGVF E AS HL GGAKKVII+AP+ +
Sbjct: 66 VVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKN 125
Query: 94 APM-FVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ V GVN + Y+P +ISNASCTTNCLAP KV+++ F + +G M
Sbjct: 126 PDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQ 185
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D P K +R R AA NI+P IP L GKL G A RVPV + S++DL
Sbjct: 186 RLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPDGSLIDL 244
Query: 212 TVRLGKD-ATYDEIKAKVKAAAEG-------PLAGILGYTEDEVVSSDFIGDTHSSIFDA 263
TV + K ++ +E+ K + AA+ L IL Y ED +VS+D +G+ HS+IFDA
Sbjct: 245 TVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFDA 304
Query: 264 QAGIPLNG---KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
PL V + +WYDNE+GYS R+ DL+ Y+ +
Sbjct: 305 ----PLTQVIDNLVHIAAWYDNEWGYSCRLRDLVIYLAER 340
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 151/261 (57%), Gaps = 4/261 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-A 92
VVNG+KI V + R+P +PW + V+E TG FTT EKA AH+ GGAKKVIISAP A
Sbjct: 68 VVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGA 127
Query: 93 DA-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
D V GVN + VISNAS TTNCLAPL K ++D + +GLM
Sbjct: 128 DVDATVVYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQ 187
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D L R R A ++IP +P L+GKL G A RVP NVS+VDL
Sbjct: 188 VLTDVYHEDL-RRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDL 246
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
+ ++ T +E+ +KAA+EG L GIL Y + +VS D+ D SS DA ++G
Sbjct: 247 SFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASL-TKVSG 305
Query: 272 KFVKLISWYDNEYGYSNRVVD 292
+ VK+ SWYDNE+G+SNR++D
Sbjct: 306 RLVKVSSWYDNEWGFSNRMLD 326
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 152/258 (58%), Gaps = 3/258 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G I + + RDPK++PW G E V+E+TG F + EKA H+ GAKKVI++AP +
Sbjct: 68 LVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKN 127
Query: 94 APM-FVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ V GVN D D + VISNASCTTNCLAP+ KV+ + F I GLM
Sbjct: 128 EDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQ 187
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D P L R R Q+IIP +P LNGKL GMA RVP NVS+VDL
Sbjct: 188 KNIDNPHKDL-RRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDL 246
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
V + +D T + I K A G L GI+ ++E+ +VS DF +THS+I D + + +
Sbjct: 247 VVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGD 306
Query: 272 KFVKLISWYDNEYGYSNR 289
+ VK+++WYDNE+GYS R
Sbjct: 307 RKVKVLAWYDNEWGYSRR 324
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 156/262 (59%), Gaps = 4/262 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP--SA 92
VNG + + +R+P ++PW + + V+ESTGVF T E AS H+ GAKKV+I+AP +
Sbjct: 69 VNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAE 128
Query: 93 DAPMFVCGVNLDAY-DPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+V GVN Y F VISNASCTTNCLAP+AKV+HDNF I++G M
Sbjct: 129 GVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQ 188
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D L R A NI+P IP L GKL G+A RVP NVSVVDL
Sbjct: 189 RILDASHRDLRRARAAAV-NIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDL 247
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
V++ K +++ ++ A++ + GI+ Y++ +VSSDF G SSI D+ + ++G
Sbjct: 248 VVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDG 307
Query: 272 KFVKLISWYDNEYGYSNRVVDL 293
VK+I+WYDNE+GYS RVVDL
Sbjct: 308 DLVKVIAWYDNEWGYSQRVVDL 329
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 158/262 (60%), Gaps = 4/262 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA 94
VNG + + +R+P ++PW + + V+ESTGVF T E AS H+ GAKKV+I+AP
Sbjct: 69 VNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGE 128
Query: 95 PM--FVCGVNLDAY-DPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
+ +V GVN Y F VISNASCTTNCLAP+AKV+HDNF I++G M
Sbjct: 129 GVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQ 188
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D L R R AA NI+P IP L GKL G+A RVP NVSVVDL
Sbjct: 189 RILDASHRDL-RRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDL 247
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
V++ K +++ ++ A++ + GI+ Y++ +VSSDF G SSI D+ + ++G
Sbjct: 248 VVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDG 307
Query: 272 KFVKLISWYDNEYGYSNRVVDL 293
VK+I+WYDNE+GYS RVVDL
Sbjct: 308 DLVKVIAWYDNEWGYSQRVVDL 329
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 149/270 (55%), Gaps = 5/270 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS--A 92
++G I V S RDP +PWA+ G + V+E TGVF A H+ GAKKVII+AP+ +
Sbjct: 69 IDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGS 128
Query: 93 DAPMFVCGVNLDAYDPSF-KVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
D P +V GVN Y +ISNASCTTNCLAP KV+ + IV+G M
Sbjct: 129 DIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQ 188
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D S + R R AA NI+P +P L GKL G+A RVP NVSVVDL
Sbjct: 189 RLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDL 247
Query: 212 TVRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
V + K T +++ + AA GPL G+L + +VS DF SS D+ + +
Sbjct: 248 VVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMG 307
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
G VK+++WYDNE+GYS RVVDL + K
Sbjct: 308 GDMVKVVAWYDNEWGYSQRVVDLADLVANK 337
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 148/267 (55%), Gaps = 2/267 (0%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
V+G I V S+R+P ++PW G + V+E TGVF + A HL GAKKV+I+AP D
Sbjct: 69 VDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGD 128
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
P +V GVN + Y + +ISNASCTTNCLAP KV+ F I++G M
Sbjct: 129 IPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL 188
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
D L R R A NI+P +P L GKL G+A RVP NVSVVDL V
Sbjct: 189 LDASHRDL-RRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVV 247
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
++ K +E+ A + +A+ L GIL ++ +VS DF SS D+ + +
Sbjct: 248 QVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDM 307
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+I+WYDNE+GYS RVVDL + K
Sbjct: 308 VKVIAWYDNEWGYSQRVVDLADIVANK 334
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 148/267 (55%), Gaps = 2/267 (0%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
V+G I V S+R+P ++PW G + V+E TGVF + A HL GAKKV+I+AP D
Sbjct: 69 VDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGD 128
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
P +V GVN + Y + +ISNASCTTNCLAP KV+ F I++G M
Sbjct: 129 IPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL 188
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
D L R R A NI+P +P L GKL G+A RVP NVSVVDL V
Sbjct: 189 LDAAHRDL-RRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVV 247
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
++ K +E+ A + +A+ L GIL ++ +VS DF SS D+ + +
Sbjct: 248 QVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDM 307
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+I+WYDNE+GYS RVVDL + K
Sbjct: 308 VKVIAWYDNEWGYSQRVVDLADIVANK 334
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 148/267 (55%), Gaps = 2/267 (0%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
V+G I V S+R+P ++PW G + V+E TGVF + A HL GAKKV+I+AP D
Sbjct: 69 VDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGD 128
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
P +V GVN + Y + +ISNASCTTNCLAP KV+ F I++G M
Sbjct: 129 IPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL 188
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
D L R R A NI+P +P L GKL G+A RVP NVSVVDL V
Sbjct: 189 LDASHRDL-RRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVV 247
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
++ K +E+ A + +A+ L GIL ++ +VS DF SS D+ + +
Sbjct: 248 QVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDM 307
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+I+WYDNE+GYS RVVDL + K
Sbjct: 308 VKVIAWYDNEWGYSQRVVDLADIVANK 334
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 148/267 (55%), Gaps = 2/267 (0%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
V+G I V S+R+P ++PW G + V+E TGVF + A HL GAKKV+I+AP D
Sbjct: 69 VDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGD 128
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
P +V GVN + Y + +ISNASCTTNCLAP KV+ F I++G M
Sbjct: 129 IPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL 188
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
D L R R A NI+P +P L GKL G+A RVP NVSVVDL V
Sbjct: 189 LDASHRDL-RRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVV 247
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
++ K +E+ A + +A+ L GIL ++ +VS DF SS D+ + +
Sbjct: 248 QVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDM 307
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+I+WYDNE+GYS RVVDL + K
Sbjct: 308 VKVIAWYDNEWGYSQRVVDLADIVANK 334
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 152/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 75 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 134
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S ASCTTN LAP+AKV++D+F +VEGLM
Sbjct: 135 LKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNT 194
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 195 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 254
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 255 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 310
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 311 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 339
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 152/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 69 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 128
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S ASCTTN LAP+AKV++D+F +VEGLM
Sbjct: 129 LKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNT 188
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 189 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 248
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 249 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 304
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 305 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 333
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 152/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 67 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 126
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S ASCTTN LAP+AKV++D+F +VEGLM
Sbjct: 127 LKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINAYTGDQNT 186
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 187 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 246
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 247 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 302
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 303 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 152/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 70 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 129
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S ASCTTN LAP+AKV++D+F +VEGLM
Sbjct: 130 LKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNT 189
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 190 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 249
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 250 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 305
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 306 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 334
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 152/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 67 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 126
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S ASCTTN LAP+AKV++D+F +VEGLM
Sbjct: 127 LKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNT 186
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 187 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 246
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 247 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 302
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 303 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 146/265 (55%), Gaps = 2/265 (0%)
Query: 37 GNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SADAP 95
G I V S+R+P ++PW G + V+E TGVF + A HL GAKKV+I+AP D P
Sbjct: 69 GKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIP 128
Query: 96 MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXXD 155
+V GVN + Y + +ISNASCTTNCLAP KV+ F I++G M D
Sbjct: 129 TYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 188
Query: 156 GPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTVRL 215
L R R A NI+P +P L GKL G+A RVP NVSVVDL V++
Sbjct: 189 ASHRDL-RRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVVQV 247
Query: 216 GKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVK 275
K +E+ A + +A+ L GIL ++ +VS DF SS D+ + + VK
Sbjct: 248 SKKTFAEEVNAAFRESADQELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVK 307
Query: 276 LISWYDNEYGYSNRVVDLIKYIQTK 300
+I+WYDNE+GYS RVVDL + K
Sbjct: 308 VIAWYDNEWGYSQRVVDLADIVANK 332
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 151/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 67 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 126
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S AS TTN LAP+AKV++D+F +VEGLM
Sbjct: 127 LKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINAYTGDQNT 186
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 187 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 246
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 247 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 302
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 303 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 151/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 67 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 126
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S AS TTN LAP+AKV++D+F +VEGLM
Sbjct: 127 LKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNT 186
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 187 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 246
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 247 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 302
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 303 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 151/269 (56%), Gaps = 10/269 (3%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP + D
Sbjct: 67 VNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGD 126
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
V N D S V+S AS TTN LAP+AKV++D+F +VEGLM
Sbjct: 127 LKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNT 186
Query: 154 XDGPSGKL-WRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLT 212
D P K R R AA+NIIP IP ++GKL G A RVPVA S+ +LT
Sbjct: 187 QDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELT 246
Query: 213 VRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDA-QAGIPLN 270
V L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA Q +
Sbjct: 247 VVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSV 302
Query: 271 G--KFVKLISWYDNEYGYSNRVVDLIKYI 297
G + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 303 GDRQLVKVAAWYDNEMSYTAQLVRTLAYL 331
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 147/260 (56%), Gaps = 2/260 (0%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SAD 93
V+G I V S R+P +PW + G + V+E TGVF E A H+ GAKKVII+AP D
Sbjct: 70 VDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGD 129
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
P +V GVN DAY +ISNASCTTNCLAP KV+ F I++G M
Sbjct: 130 IPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL 189
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
D S + R R AA NI+P +P L GKL G+A RVP NVSVVDL V
Sbjct: 190 LDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVV 248
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
++ K +E+ A + +AE L GIL ++ +VS DF S+ D+ + +
Sbjct: 249 QVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDM 308
Query: 274 VKLISWYDNEYGYSNRVVDL 293
VK+I+WYDNE+GYS RVVDL
Sbjct: 309 VKVIAWYDNEWGYSQRVVDL 328
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 5/261 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-- 92
V + I V ER + +PW + G + V++ TGV+ + E AH+A GAKKV+ S P +
Sbjct: 70 VGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSND 129
Query: 93 -DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
DA + V GVN D +++SNASCTTNC+ P+ K++ D + I G +
Sbjct: 130 LDATV-VYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQ 188
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D L R R A+Q+IIP P N + +A RVP NV+ +DL
Sbjct: 189 QVIDAYHPDL-RRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDL 247
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
+V + K +E+ ++ AA+G GI+ YTE +VS DF D HS+I D
Sbjct: 248 SVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGA 307
Query: 272 KFVKLISWYDNEYGYSNRVVD 292
+K + W DNE+G++NR++D
Sbjct: 308 HLIKTLVWCDNEWGFANRMLD 328
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 137/261 (52%), Gaps = 5/261 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-- 92
V + I V ER + +PW + G + V++ TGV+ + E AH+A GAKKV+ S P +
Sbjct: 69 VGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSND 128
Query: 93 -DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
DA + V GVN D +++SNASCTTNC+ P+ K++ D + I G +
Sbjct: 129 LDATV-VYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQ 187
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D L R R A+Q+IIP P N + +A RVP NV+ +DL
Sbjct: 188 QVIDAYHPDL-RRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDL 246
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
+V + K +E+ ++ AA+G GI+ YTE +VS DF D HS+I D
Sbjct: 247 SVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGA 306
Query: 272 KFVKLISWYDNEYGYSNRVVD 292
+K + W DNE+G++NR++D
Sbjct: 307 HLIKTLVWCDNEWGFANRMLD 327
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 135/261 (51%), Gaps = 5/261 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-- 92
V + I V ER + +PW + G + V++ TGV+ + E AH+A GAKKV+ S P +
Sbjct: 70 VGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSND 129
Query: 93 -DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXX 151
DA + V GVN D +++SNAS TTN + P+ K++ D + I G +
Sbjct: 130 LDATV-VYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTVTTIHSAMHDQ 188
Query: 152 XXXDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDL 211
D L R R A+Q+IIP P N + +A RVP NV+ +DL
Sbjct: 189 QVIDAYHPDL-RRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDL 247
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
+V + K +E+ ++ AA+G GI+ YTE +VS DF D HS+I D
Sbjct: 248 SVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGA 307
Query: 272 KFVKLISWYDNEYGYSNRVVD 292
+K + W DNE+G++NR++D
Sbjct: 308 HLIKTLVWCDNEWGFANRMLD 328
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 93 DAPMFVCGVNL--DAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVE 138
D P+ V VN DA+ +I+N +CTT P+ KV+HD +V
Sbjct: 102 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVR 149
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 93 DAPMFVCGVNL--DAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVE 138
D P+ V VN DA+ +I+N +CTT P+ KV+HD +V
Sbjct: 120 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVR 167
>pdb|4BA6|A Chain A, High Resolution Structure Of The C-terminal Family 65
Carbohydrate Binding Module (cbm65b) Of Endoglucanase
Cel5a From Eubacterium Cellulosolvens
Length = 144
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 36 NGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAH 77
NG I + R KDI WA+ YVV+ T VFT + A A+
Sbjct: 58 NGADIVLIFARWDKDI-WAQISPYYVVDGTAVFTKEQIAKAY 98
>pdb|2YPJ|A Chain A, Non-catalytic Carbohydrate Binding Module Cbm65b
Length = 155
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 36 NGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAH 77
NG I + R KDI WA+ YVV+ T VFT + A A+
Sbjct: 77 NGADIVLIFARWDKDI-WAQISPYYVVDGTAVFTKEQIAKAY 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,685,816
Number of Sequences: 62578
Number of extensions: 330036
Number of successful extensions: 830
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 75
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)