Query psy6885
Match_columns 301
No_of_seqs 202 out of 1619
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:58:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 5E-107 1E-111 773.3 27.1 290 11-300 49-354 (361)
2 PRK15425 gapA glyceraldehyde-3 100.0 3E-103 6E-108 745.4 28.2 288 11-299 43-331 (331)
3 PTZ00023 glyceraldehyde-3-phos 100.0 7E-103 1E-107 744.5 28.3 290 11-300 44-336 (337)
4 PLN02237 glyceraldehyde-3-phos 100.0 1E-102 2E-107 759.6 26.6 287 12-299 119-410 (442)
5 PLN02272 glyceraldehyde-3-phos 100.0 2E-102 5E-107 755.5 28.7 290 11-300 127-417 (421)
6 PLN02358 glyceraldehyde-3-phos 100.0 5E-102 1E-106 740.3 29.2 289 11-299 47-337 (338)
7 PRK07403 glyceraldehyde-3-phos 100.0 5E-102 1E-106 737.8 27.1 287 12-299 45-334 (337)
8 PLN03096 glyceraldehyde-3-phos 100.0 4E-101 9E-106 743.0 26.8 287 12-299 104-392 (395)
9 PRK08955 glyceraldehyde-3-phos 100.0 3E-100 6E-105 727.3 25.6 287 11-300 44-333 (334)
10 PRK07729 glyceraldehyde-3-phos 100.0 4E-100 9E-105 725.9 26.6 289 11-300 43-333 (343)
11 PRK13535 erythrose 4-phosphate 100.0 6E-100 1E-104 724.7 26.6 288 11-299 45-334 (336)
12 PTZ00353 glycosomal glyceralde 100.0 3.2E-98 7E-103 712.6 26.9 288 11-300 44-336 (342)
13 TIGR01534 GAPDH-I glyceraldehy 100.0 5.4E-98 1E-102 709.6 24.5 281 11-292 42-327 (327)
14 PRK08289 glyceraldehyde-3-phos 100.0 1.4E-97 3E-102 725.3 25.4 288 11-300 176-471 (477)
15 TIGR01532 E4PD_g-proteo D-eryt 100.0 6.5E-96 1E-100 695.8 24.0 281 11-292 43-325 (325)
16 COG0057 GapA Glyceraldehyde-3- 100.0 1.8E-94 3.9E-99 676.9 25.6 288 11-299 43-332 (335)
17 KOG0657|consensus 100.0 6.7E-84 1.5E-88 588.4 14.4 259 10-300 27-285 (285)
18 PF02800 Gp_dh_C: Glyceraldehy 100.0 9.1E-51 2E-55 350.3 11.7 157 123-280 1-157 (157)
19 TIGR01546 GAPDH-II_archae glyc 100.0 8.7E-43 1.9E-47 332.0 14.8 196 12-233 42-243 (333)
20 PRK06901 aspartate-semialdehyd 100.0 4.5E-42 9.7E-47 323.9 15.6 200 22-232 35-254 (322)
21 COG0136 Asd Aspartate-semialde 100.0 5.4E-38 1.2E-42 297.0 16.6 254 27-289 38-325 (334)
22 TIGR01745 asd_gamma aspartate- 100.0 4.3E-38 9.3E-43 302.6 11.3 205 23-232 34-298 (366)
23 PRK04207 glyceraldehyde-3-phos 100.0 1E-36 2.2E-41 292.2 14.1 214 15-257 48-273 (341)
24 TIGR01296 asd_B aspartate-semi 100.0 2.2E-36 4.8E-41 289.6 12.7 199 27-232 36-272 (339)
25 PRK14874 aspartate-semialdehyd 100.0 5.5E-36 1.2E-40 286.2 13.1 196 27-231 38-268 (334)
26 PRK06728 aspartate-semialdehyd 100.0 1.1E-34 2.3E-39 278.1 15.0 199 27-232 43-277 (347)
27 PRK06598 aspartate-semialdehyd 100.0 3.6E-34 7.9E-39 276.0 13.3 202 27-232 39-300 (369)
28 smart00846 Gp_dh_N Glyceraldeh 100.0 7.9E-32 1.7E-36 230.6 10.8 108 11-118 41-149 (149)
29 PF00044 Gp_dh_N: Glyceraldehy 100.0 4.5E-32 9.7E-37 232.5 6.2 107 12-118 43-151 (151)
30 PRK08040 putative semialdehyde 100.0 5.3E-29 1.1E-33 238.3 18.0 198 27-231 41-267 (336)
31 PRK05671 aspartate-semialdehyd 100.0 1.6E-28 3.4E-33 235.2 15.4 255 28-297 42-331 (336)
32 PLN02383 aspartate semialdehyd 99.9 1.4E-27 3.1E-32 229.3 13.5 198 27-231 44-276 (344)
33 TIGR00978 asd_EA aspartate-sem 99.9 1.9E-25 4.2E-30 214.1 18.1 228 57-297 73-339 (341)
34 PRK08664 aspartate-semialdehyd 99.9 9E-25 2E-29 210.1 15.8 168 57-233 76-268 (349)
35 PRK00436 argC N-acetyl-gamma-g 99.9 2.8E-21 6E-26 185.6 16.3 228 57-297 68-327 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.8 3.2E-20 6.9E-25 178.6 15.4 230 57-297 68-330 (346)
37 KOG4777|consensus 99.8 3.5E-21 7.6E-26 175.8 8.0 192 27-232 40-277 (361)
38 PLN02968 Probable N-acetyl-gam 99.8 3.8E-19 8.2E-24 173.2 14.9 231 57-297 104-365 (381)
39 PRK11863 N-acetyl-gamma-glutam 99.7 2E-16 4.2E-21 150.4 10.3 229 57-296 50-303 (313)
40 TIGR01851 argC_other N-acetyl- 99.6 1.1E-14 2.4E-19 137.9 11.2 179 57-240 49-246 (310)
41 PF02774 Semialdhyde_dhC: Semi 99.3 1.3E-11 2.8E-16 108.9 7.5 104 127-231 1-132 (184)
42 PRK08300 acetaldehyde dehydrog 99.1 3.2E-11 7E-16 114.2 4.4 88 57-148 70-160 (302)
43 TIGR03215 ac_ald_DH_ac acetald 98.6 4.7E-08 1E-12 92.2 5.4 90 57-149 64-155 (285)
44 COG0002 ArgC Acetylglutamate s 98.5 2.5E-06 5.5E-11 81.9 13.5 228 56-297 69-333 (349)
45 PF01118 Semialdhyde_dh: Semia 97.4 3.3E-05 7.1E-10 63.4 -0.4 49 57-107 66-119 (121)
46 KOG4354|consensus 96.3 0.012 2.7E-07 54.5 6.9 196 80-291 109-318 (340)
47 smart00859 Semialdhyde_dh Semi 95.9 0.0047 1E-07 50.2 2.0 55 51-107 59-121 (122)
48 COG4569 MhpF Acetaldehyde dehy 83.4 2 4.2E-05 39.3 4.7 72 57-132 71-144 (310)
49 PF03447 NAD_binding_3: Homose 73.2 3.4 7.3E-05 33.1 2.9 31 57-89 59-89 (117)
50 PRK13301 putative L-aspartate 69.6 4.2 9.2E-05 38.3 3.0 32 57-88 62-93 (267)
51 COG1712 Predicted dinucleotide 56.7 8.9 0.00019 35.6 2.5 84 56-149 59-149 (255)
52 COG4995 Uncharacterized protei 56.4 4.2 9.1E-05 40.7 0.4 68 17-88 279-358 (420)
53 PF02192 PI3K_p85B: PI3-kinase 52.5 32 0.0007 26.4 4.6 35 211-245 2-37 (78)
54 smart00833 CobW_C Cobalamin sy 50.2 24 0.00053 26.5 3.7 49 210-258 3-55 (92)
55 PF07683 CobW_C: Cobalamin syn 45.2 24 0.00053 26.7 3.0 49 210-258 3-54 (94)
56 PRK13303 L-aspartate dehydroge 45.1 21 0.00045 33.1 3.1 31 56-87 60-90 (265)
57 PF00107 ADH_zinc_N: Zinc-bind 44.5 7.1 0.00015 31.1 -0.1 36 56-91 57-92 (130)
58 cd08230 glucose_DH Glucose deh 38.9 36 0.00079 32.1 3.8 34 57-90 238-271 (355)
59 TIGR03855 NAD_NadX aspartate d 35.3 38 0.00083 31.0 3.2 31 57-87 37-67 (229)
60 cd04885 ACT_ThrD-I Tandem C-te 35.0 1.4E+02 0.0031 21.2 5.7 57 173-230 5-61 (68)
61 TIGR03366 HpnZ_proposed putati 34.0 42 0.0009 30.7 3.3 33 57-89 187-219 (280)
62 PRK06349 homoserine dehydrogen 32.1 46 0.00099 33.2 3.4 35 55-90 70-105 (426)
63 COG1063 Tdh Threonine dehydrog 29.4 51 0.0011 31.7 3.1 36 56-91 237-272 (350)
64 COG4115 Uncharacterized protei 26.4 1.9E+02 0.004 22.6 5.1 55 221-279 24-80 (84)
65 PRK13304 L-aspartate dehydroge 26.3 69 0.0015 29.6 3.3 31 57-87 61-91 (265)
66 COG0621 MiaB 2-methylthioadeni 25.7 52 0.0011 33.2 2.5 69 65-150 167-241 (437)
67 cd04886 ACT_ThrD-II-like C-ter 24.5 2.2E+02 0.0048 19.3 5.1 56 174-229 6-65 (73)
68 PRK13587 1-(5-phosphoribosyl)- 23.4 1.1E+02 0.0023 28.0 4.0 30 59-88 76-105 (234)
69 TIGR01202 bchC 2-desacetyl-2-h 22.4 87 0.0019 29.1 3.2 32 56-87 199-230 (308)
70 TIGR01921 DAP-DH diaminopimela 22.3 4.6E+02 0.0099 25.4 8.2 32 56-88 59-90 (324)
71 smart00143 PI3K_p85B PI3-kinas 22.2 1.2E+02 0.0025 23.4 3.3 30 211-240 2-32 (78)
72 PRK06270 homoserine dehydrogen 21.1 1.4E+02 0.003 28.8 4.4 31 56-88 88-123 (341)
73 PRK09880 L-idonate 5-dehydroge 20.8 1.1E+02 0.0024 28.8 3.6 31 57-87 235-265 (343)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-107 Score=773.26 Aligned_cols=290 Identities=54% Similarity=0.868 Sum_probs=281.6
Q ss_pred ccceeccCCCCCCceEEe--------cCCceEECCEEEEEE-ecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCC
Q psy6885 11 ARFSSDEDDLKSPSTFFS--------CKWPPVVNGNKIAVH-SERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGG 81 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a--------~~~~l~i~gk~I~v~-~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aG 81 (301)
-+|||||+||+|+++|+. +++.|.+||++|.++ ++++|+++||+++|+|||+||||.|++++.+++|+++|
T Consensus 49 yLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~G 128 (361)
T PTZ00434 49 YQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGG 128 (361)
T ss_pred eeeeeecCCCCcCCceeecccccccccCCEEEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcC
Confidence 479999999999999998 899999999999996 99999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCC-CCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhh-hhccCeeEEEEeeeeccccccccccCCC
Q psy6885 82 AKKVIISAPSAD-APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVI-HDNFEIVEGLMTTVHATTATQKTVDGPS 158 (301)
Q Consensus 82 ak~ViIsaps~d-~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L-~~~fgI~~~~~TT~ha~s~~q~~lD~~~ 158 (301)
|||||||+|++| .|+||+||||+.|++ .++||||+|||||||||++|+| ||+|||++++|||+||||++|+++|+++
T Consensus 129 AKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~ 208 (361)
T PTZ00434 129 AKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVS 208 (361)
T ss_pred CCEEEECCCCCCCCceEEEcCChHHcCcccCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcC
Confidence 999999999887 579999999999998 5789999999999999999999 7999999999999999999999999997
Q ss_pred CCCcccccccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCc
Q psy6885 159 GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAG 238 (301)
Q Consensus 159 ~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkg 238 (301)
++||||+|++++||||++||++|++++|||+|+||++|+++||||++||++||+++++|++++||||++|++|++++|||
T Consensus 209 ~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkg 288 (361)
T PTZ00434 209 VKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKG 288 (361)
T ss_pred cccccccccccccCccCCcchhhhhceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeecCCCCccceEeeCCCCeeee----CCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 239 ILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN----GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 239 il~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~----~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+|+|+|+||+||+|++||+|||+.+|++++ ++++|+++||||||||||||+||+.||.+.
T Consensus 289 Il~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~ 354 (361)
T PTZ00434 289 ILGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAK 354 (361)
T ss_pred cccccCCCccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999996 489999999999999999999999999753
No 2
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.9e-103 Score=745.39 Aligned_cols=288 Identities=64% Similarity=0.966 Sum_probs=281.2
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-+|||||+||+|+++|+.+++.|.|+|++|+++++++|+++||+++|+|+||||||.|++++++++|+++|||+|++|+|
T Consensus 43 yll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 43 YMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred HHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccc
Q psy6885 91 SAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 169 (301)
Q Consensus 91 s~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a 169 (301)
+++ +|+||||||++.|+. ++||||||||||||+|++|+||++|||++++||||||+|++|+++|++++++|||+|+++
T Consensus 123 ~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lapvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa 201 (331)
T PRK15425 123 SKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGAS 201 (331)
T ss_pred CCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchh
Confidence 875 799999999999975 789999999999999999999999999999999999999999999998779999999999
Q ss_pred cccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceee
Q psy6885 170 QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVS 249 (301)
Q Consensus 170 ~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS 249 (301)
+||||++||++++++||||+|+||++++|+||||++||++||++++++++++||++++|+++++++|||||+|+|+|+||
T Consensus 202 ~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS 281 (331)
T PRK15425 202 QNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVS 281 (331)
T ss_pred hceecccCCchHHHHhhccccCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 250 SDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 250 ~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
+||+|++||+|||+.+|++++++++|+++||||||||||||+|++.||++
T Consensus 282 ~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 282 TDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331 (331)
T ss_pred eecCCCCcceEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999864
No 3
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-103 Score=744.54 Aligned_cols=290 Identities=65% Similarity=0.980 Sum_probs=282.8
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-||||||+||+|+++|+.+++.|.+||++|+++++++|+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|
T Consensus 44 yll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap 123 (337)
T PTZ00023 44 YLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAP 123 (337)
T ss_pred hhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCC--CCCcccccc
Q psy6885 91 SAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGRG 167 (301)
Q Consensus 91 s~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~--~~d~r~~r~ 167 (301)
.++ +|+||||||++.|++.++||||||||||||+|++|+||++|||++++||||||+|.+|.++|+++ ++|||++|+
T Consensus 124 ~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~ 203 (337)
T PTZ00023 124 PKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRC 203 (337)
T ss_pred CCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccce
Confidence 764 79999999999998877899999999999999999999999999999999999999999999975 589999999
Q ss_pred cccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccce
Q psy6885 168 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEV 247 (301)
Q Consensus 168 ~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~ 247 (301)
+|+||||++||++++++||||+|+||++++|+||||++||++||++++++++++||++++|+++++++|||||+|+|+|+
T Consensus 204 ~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~ 283 (337)
T PTZ00023 204 AGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEV 283 (337)
T ss_pred eeccccccCCCcchhhhheecccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 248 VSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 248 VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+||+|++||+|||+.+|.+++++++|+++||||||||||||+|++.||+++
T Consensus 284 VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 284 VSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336 (337)
T ss_pred eeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999865
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=9.5e-103 Score=759.64 Aligned_cols=287 Identities=45% Similarity=0.702 Sum_probs=280.0
Q ss_pred cceeccCCCCCCceEEe-cCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 12 RFSSDEDDLKSPSTFFS-CKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a-~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
+|||||+||+|+++|+. +++.|.|+|++|+|+++++|+++||+++|+||||||||.|++++++++|+++|||+|+||+|
T Consensus 119 LlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP 198 (442)
T PLN02237 119 LLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 198 (442)
T ss_pred HHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCC
Confidence 78999999999999997 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CCeEEecCCcCCCCCC-ccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccc
Q psy6885 91 SAD--APMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRG 167 (301)
Q Consensus 91 s~d--~plvV~gVN~~~~~~~-~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~ 167 (301)
.+| +||||||||++.|++. ++||||||||||||+|++|+||++|||++++||||||||++|+++|+++ +||||+|+
T Consensus 199 ~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Ra 277 (442)
T PLN02237 199 AKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARA 277 (442)
T ss_pred CCCCCCceEecccCHHHhCcCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccc
Confidence 765 7999999999999875 7899999999999999999999999999999999999999999999985 99999999
Q ss_pred cccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecC-CCCHHHHHHHHHHhhcCCCCccccccccc
Q psy6885 168 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDE 246 (301)
Q Consensus 168 ~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k-~~~~eei~~~l~~a~~~~lkgil~~~e~~ 246 (301)
+++||||++||++|++++|||+|+||++|+++||||++||++||+++++| ++++||||++|+++++++|||||+|+|+|
T Consensus 278 aa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~p 357 (442)
T PLN02237 278 AALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVP 357 (442)
T ss_pred cccccccCCcchhhhhceecccCCCceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCc
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred eeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 247 VVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 247 ~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
+||+||+|++||+|||+.+|++++++++|+++||||||||||||+||+.||++
T Consensus 358 lVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aWYDNEwGys~R~~dl~~~~~~ 410 (442)
T PLN02237 358 LVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAA 410 (442)
T ss_pred eeeeeecCCCcceEEEcccCEEeCCCEEEEEEEeCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999976
No 5
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2.3e-102 Score=755.55 Aligned_cols=290 Identities=67% Similarity=1.045 Sum_probs=283.6
Q ss_pred ccceeccCCCCCCceEEe-cCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecC
Q psy6885 11 ARFSSDEDDLKSPSTFFS-CKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISA 89 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a-~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsa 89 (301)
-||||||+||+|+++|+. +++.|.|||++|+|+++++|++++|+++|+||||||||.|++++++++|+++||||||||+
T Consensus 127 yllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIda 206 (421)
T PLN02272 127 YMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISA 206 (421)
T ss_pred HHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECC
Confidence 489999999999999997 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccc
Q psy6885 90 PSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 169 (301)
Q Consensus 90 ps~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a 169 (301)
|++|+|+||||||++.|+..++||||||||||||+|++|+||++|||++++|||||++|++|+++|++++++||++|+++
T Consensus 207 p~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa 286 (421)
T PLN02272 207 PSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGAS 286 (421)
T ss_pred CCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcc
Confidence 99999999999999999887789999999999999999999999999999999999999999999998779999999999
Q ss_pred cccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceee
Q psy6885 170 QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVS 249 (301)
Q Consensus 170 ~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS 249 (301)
+||||++||++++++||||+|+||++++||||||++||++||++++++++++||++++|+++++++|||||+|+|+|+||
T Consensus 287 ~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS 366 (421)
T PLN02272 287 QNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVS 366 (421)
T ss_pred cccccCCCccchhhhhcccccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 250 SDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 250 ~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
+||+|++||+|||+.+|++++++++||++||||||||||||+||+.||...
T Consensus 367 ~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEwGys~R~~dl~~~~~~~ 417 (421)
T PLN02272 367 NDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 417 (421)
T ss_pred eecCCCCCcEEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999753
No 6
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.6e-102 Score=740.33 Aligned_cols=289 Identities=64% Similarity=0.985 Sum_probs=281.9
Q ss_pred ccceeccCCCCCCc-eEEe-cCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 11 ARFSSDEDDLKSPS-TFFS-CKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 11 ~~~~~d~~~g~~~~-~v~a-~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
-+|||||+||+|++ +|+. +|+.|.|+|++|+++++++|+++||++.|+||||||||.|++++++++|+++|||||+||
T Consensus 47 ~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiS 126 (338)
T PLN02358 47 YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVIS 126 (338)
T ss_pred HhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeC
Confidence 47999999999997 9999 667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 89 APSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 89 aps~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
+|++|+|+||||||++.|+..++||||||||||||+|+||+||++|||++++||||||+|++|+++|++++++|||+|++
T Consensus 127 ap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~ 206 (338)
T PLN02358 127 APSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAA 206 (338)
T ss_pred CCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCcccc
Confidence 99999999999999999988788999999999999999999999999999999999999999999999877999999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++++++||||+|+||++|+|+||||++||++||++++++++++||++++|+++++++|||||+|+|+|+|
T Consensus 207 a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~V 286 (338)
T PLN02358 207 SFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVV 286 (338)
T ss_pred ccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
|+||+|++||+|||+.+|.+++++++|+++||||||||||||+||+.||.+
T Consensus 287 S~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 287 STDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred eeecCCCCcceEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999964
No 7
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=5.3e-102 Score=737.83 Aligned_cols=287 Identities=48% Similarity=0.761 Sum_probs=280.4
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
+|||||+||+|+++|+.+++.|.|||++|+++++++|+++||+++|+|+||||||.|++++++++|+++|||+|++|+|.
T Consensus 45 ll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~ 124 (337)
T PRK07403 45 LLKYDSMLGKLNADISADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPG 124 (337)
T ss_pred HHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC--CCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 92 AD--APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 92 ~d--~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
+| +||||||||++.|++ .++||||||||||||+|++|+||++|||++++||||||+|++|+++|+++ +||||+|++
T Consensus 125 ~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raa 203 (337)
T PRK07403 125 KGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAA 203 (337)
T ss_pred CCCCCceEecccCHHHhccCCCCEEECCcHHHHHHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-ccccccccc
Confidence 54 699999999999986 47899999999999999999999999999999999999999999999985 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++|+++++||+|+||++|+++||||+++|++||++++++++++|||+++|++|++++|||||+|+|+|+|
T Consensus 204 a~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~V 283 (337)
T PRK07403 204 AVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLV 283 (337)
T ss_pred ccccccCCcchhhhhhhcCcccCCcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
|+||+|++||+|||+.+|.+++++++|+++||||||||||||+||+.||.+
T Consensus 284 S~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~Gys~r~~dl~~~~~~ 334 (337)
T PRK07403 284 SSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVAR 334 (337)
T ss_pred eeeecCCCCCEEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999976
No 8
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.3e-101 Score=742.98 Aligned_cols=287 Identities=44% Similarity=0.691 Sum_probs=279.8
Q ss_pred cceeccCCCCCCceEEe-cCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 12 RFSSDEDDLKSPSTFFS-CKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a-~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
+|+|||+||+|+++|+. +|+.|.|||++|+++++++|+++||++.|+|+||||||.|++++++++|+++|||||+||+|
T Consensus 104 Ll~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 104 LLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred HHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC
Confidence 67999999999999975 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccc
Q psy6885 91 SAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 169 (301)
Q Consensus 91 s~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a 169 (301)
.++ +||||||||++.|++.++||||||||||||+|++|+||++|||++++||||||||++|+++|+++ +|+||+|+++
T Consensus 184 ~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa 262 (395)
T PLN03096 184 GKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAA 262 (395)
T ss_pred CCCCCCeEeCccCHHHhccCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-Cccccchhhh
Confidence 764 89999999999998878899999999999999999999999999999999999999999999985 8999999999
Q ss_pred cccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceee
Q psy6885 170 QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVS 249 (301)
Q Consensus 170 ~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS 249 (301)
+||||++||++++++||||+|+||++++|+||||++||++||++++++++++||++++|+++++++|||||+|+|+|+||
T Consensus 263 ~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS 342 (395)
T PLN03096 263 LNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVS 342 (395)
T ss_pred ccccccCCCcchhhhhcccccCCcEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 250 SDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 250 ~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
+||+|++||+|||+.+|++++++++|+++||||||||||||+||+.||++
T Consensus 343 ~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~ 392 (395)
T PLN03096 343 VDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVAN 392 (395)
T ss_pred eeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999975
No 9
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.6e-100 Score=727.28 Aligned_cols=287 Identities=40% Similarity=0.638 Sum_probs=278.8
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-+|||||+||+|+++|+++|+.|.|||++|+++++++|++++|+ |+|+||||||.|++++++++|+++|||+|++|+|
T Consensus 44 ~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 44 HLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred HHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence 37899999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CC--CCCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccc
Q psy6885 91 SA--DAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRG 167 (301)
Q Consensus 91 s~--d~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~ 167 (301)
++ |+||||||||++.|++ .++||||||||||||+|+||+||++|||++++||||||+|++|+++|+++ +|+||+|+
T Consensus 122 ~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~ 200 (334)
T PRK08955 122 VKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARA 200 (334)
T ss_pred CCCCCCceEecccCHHHhcccCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchh
Confidence 75 4699999999999997 37899999999999999999999999999999999999999999999985 78899999
Q ss_pred cccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccce
Q psy6885 168 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEV 247 (301)
Q Consensus 168 ~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~ 247 (301)
+|+||||+++|++++++||||+|+||++++|+||||++||++||++++++++++||++++|+++++++|||||+|+|+|+
T Consensus 201 ~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~ 280 (334)
T PRK08955 201 CGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPL 280 (334)
T ss_pred heeccccccCCCccccceEccccCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 248 VSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 248 VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+||+|++||+|||+.+|.+++|+++|+++||||||||||||+||+.||.+.
T Consensus 281 vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~dl~~~~~~~ 333 (334)
T PRK08955 281 VSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEWGYANRTAELARKVGLA 333 (334)
T ss_pred ccceeCCCCchHheehhcCEEecCCEEEEEEEeCCchhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999764
No 10
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4e-100 Score=725.93 Aligned_cols=289 Identities=48% Similarity=0.749 Sum_probs=280.0
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-||||||+||+|+++|+.+++.|.|||++|+++++++|+++||++.|+||||||||.|+++++++.|+++|||+|++|+|
T Consensus 43 yll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (343)
T PRK07729 43 HLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP 122 (343)
T ss_pred HHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 SAD-APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s~d-~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
.+| ++++|||||++.|++ .++||||||||||||+|++|+||++|||++++||||||+|++|+++|+++ +|||++|++
T Consensus 123 ~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a 201 (343)
T PRK07729 123 GKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARAC 201 (343)
T ss_pred CCCCCCcEEecccHHHhccCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhccccc
Confidence 765 455699999999987 47899999999999999999999999999999999999999999999985 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||+++++.++||+|+||++|+|+||||++||++||++++++++++||++++|+++++++|||||+|+|+|+|
T Consensus 202 ~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~V 281 (343)
T PRK07729 202 GQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLV 281 (343)
T ss_pred ccceecCCCcchhhHHHhccccCCeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
|+||+|++||+|||+.+|++++++++|+++||||||||||||+||+.||.++
T Consensus 282 S~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~Gys~r~~dl~~~~~~~ 333 (343)
T PRK07729 282 SIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADE 333 (343)
T ss_pred ccccCCCCcceEEEcccCeEecCCEEEEEEEecCchHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999763
No 11
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-100 Score=724.71 Aligned_cols=288 Identities=34% Similarity=0.570 Sum_probs=280.4
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-||||||+||+|+++|+++|++|.|||++|+++++++|+++||++.|+|+||||||.|++++++++|+++|||+|++|+|
T Consensus 45 yll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 45 HLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred HHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-C-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 SA-D-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s~-d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
++ | .++||||||++.|++.++||||||||||||+|++|+||++|||++++||||||+|++|+++|+++ +++|++|++
T Consensus 125 ~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~ 203 (336)
T PRK13535 125 GSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAA 203 (336)
T ss_pred cccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEe
Confidence 75 5 45899999999999878899999999999999999999999999999999999999999999985 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++++++||||+|+||++++||||||++||++||++++++++++||++++|+++++++|||||+|+++|+|
T Consensus 204 a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~V 283 (336)
T PRK13535 204 SQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLV 283 (336)
T ss_pred eeccccCccHHHhhhhhcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
|+||+|++||+|||+.+|++++++++|+++||||||||||||+||+.||.+
T Consensus 284 S~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 284 SIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAA 334 (336)
T ss_pred ccccCCCCcceEEEcccCEEECCCEEEEEEEEcCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999965
No 12
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-98 Score=712.58 Aligned_cols=288 Identities=28% Similarity=0.486 Sum_probs=277.3
Q ss_pred ccceeccCCCCCC-ceEEecCCceEECC-EEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 11 ARFSSDEDDLKSP-STFFSCKWPPVVNG-NKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 11 ~~~~~d~~~g~~~-~~v~a~~~~l~i~g-k~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
-+|||||+||+|+ ++|+.+++.|.+|| ++|+++++++|+++||+++|+|+||||||.|++++++.+|+++|||||||+
T Consensus 44 yll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviis 123 (342)
T PTZ00353 44 YVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVA 123 (342)
T ss_pred HHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEe
Confidence 3799999999996 69999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCC--CCCccccc
Q psy6885 89 APSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGR 166 (301)
Q Consensus 89 aps~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~--~~d~r~~r 166 (301)
+|++|+||||||||++.|++.++||||||||||||+|++|+||++|||++++|||||||+ +|...|+|+ ++|||++|
T Consensus 124 aps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~R 202 (342)
T PTZ00353 124 GQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTR 202 (342)
T ss_pred CCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccc
Confidence 999999999999999999987789999999999999999999999999999999999997 677788765 49999999
Q ss_pred ccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccc
Q psy6885 167 GAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDE 246 (301)
Q Consensus 167 ~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~ 246 (301)
++++||||++||++++++||||+|+||++|+|+||||++||++||++++++++++||++++|+++++++|||||+|+|+|
T Consensus 203 aA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~ 282 (342)
T PTZ00353 203 VAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRD 282 (342)
T ss_pred hHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCccceEeeCCCCeee-eCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 247 VVSSDFIGDTHSSIFDAQAGIPL-NGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 247 ~VS~D~~~~~~s~i~d~~~~~~~-~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
+||+||+|++ |+|||+.+|+++ +++++|+++||||||||||||+|++.||.+.
T Consensus 283 ~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 283 MISVDCIPNG-KLCYDATSSSSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQI 336 (342)
T ss_pred eeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 9999999999 599999999995 8899999999999999999999999999763
No 13
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=5.4e-98 Score=709.59 Aligned_cols=281 Identities=58% Similarity=0.860 Sum_probs=273.5
Q ss_pred ccceeccCCCCCCceEEecCC-ceEECCE-EEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKW-PPVVNGN-KIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~-~l~i~gk-~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
-||||||+||+|+++|+.+++ .|.|||+ .|.++++++|++++|+++|+|+||||||.|++++++++|+++|||+|++|
T Consensus 42 yll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS 121 (327)
T TIGR01534 42 YLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS 121 (327)
T ss_pred HHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence 479999999999999999999 7999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccc
Q psy6885 89 APSAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRG 167 (301)
Q Consensus 89 aps~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~ 167 (301)
+|+.| +||||||||++.|+..++||||||||||||+|+||+||++|||+++.||||||+|++|+++|+++ ++||++|+
T Consensus 122 ap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~ 200 (327)
T TIGR01534 122 APSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARA 200 (327)
T ss_pred CCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceE
Confidence 99877 89999999999999877899999999999999999999999999999999999999999999985 88999999
Q ss_pred cccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccce
Q psy6885 168 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEV 247 (301)
Q Consensus 168 ~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~ 247 (301)
+++||||+++|++++++||||+|+||++++|+||||++||+++|++++++++++||++++|+++++++|||||+|+|+|+
T Consensus 201 ~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~ 280 (327)
T TIGR01534 201 AALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDEL 280 (327)
T ss_pred eEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccceEeeCCCCeeee--CCeEEEEEEecCCchhhhhHHH
Q psy6885 248 VSSDFIGDTHSSIFDAQAGIPLN--GKFVKLISWYDNEYGYSNRVVD 292 (301)
Q Consensus 248 VS~D~~~~~~s~i~d~~~~~~~~--~~~~kl~~WyDNE~gy~~r~~d 292 (301)
||+||+|++||+|||+.++++++ ++++|+++||||||||||||+|
T Consensus 281 VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDNE~gys~r~~d 327 (327)
T TIGR01534 281 VSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDNEWGYSNRVVD 327 (327)
T ss_pred eeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCCCceeeeEccC
Confidence 99999999999999999999954 8999999999999999999987
No 14
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-97 Score=725.35 Aligned_cols=288 Identities=37% Similarity=0.561 Sum_probs=279.4
Q ss_pred ccceeccCCCCCCceEEec--CCceEECCEEEEEEecCCCCCCCccccccc--EEEEecCCcCCHHHHHHHHH-CCCCeE
Q psy6885 11 ARFSSDEDDLKSPSTFFSC--KWPPVVNGNKIAVHSERDPKDIPWAKSGAE--YVVESTGVFTTIEKASAHLA-GGAKKV 85 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~--~~~l~i~gk~I~v~~~~~~~~~~w~~~gvd--iv~e~tG~f~s~e~a~~hl~-aGak~V 85 (301)
-+|+|||+||+|+++|+.+ ++.|.+||+.|+++++++|+++||+++|+| +|+||||.|.+++.+++|++ +|||||
T Consensus 176 yLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkV 255 (477)
T PRK08289 176 SLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKV 255 (477)
T ss_pred HHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEE
Confidence 4799999999999999987 799999999999999999999999999999 99999999999999999999 899999
Q ss_pred EecCCCCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccc
Q psy6885 86 IISAPSAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRD 164 (301)
Q Consensus 86 iIsaps~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~ 164 (301)
|||+|++| +|+||||||++.|++.++||||||||||||+|++|+||++|||++++|||+||||++|+++|+++ +++||
T Consensus 256 iiSAP~k~d~p~iV~GVN~~~~~~~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~Rr 334 (477)
T PRK08289 256 LLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRR 334 (477)
T ss_pred EECCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcc
Confidence 99999986 89999999999998778899999999999999999999999999999999999999999999985 88999
Q ss_pred ccccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhh-cCCCCcccccc
Q psy6885 165 GRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAA-EGPLAGILGYT 243 (301)
Q Consensus 165 ~r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~-~~~lkgil~~~ 243 (301)
+|++++||||++||++++++|+||+|+||++|+|+||||++||++||++++++++++||++++|++++ +++|+|||+|+
T Consensus 335 gRaaa~NIIptsTGAAkAv~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt 414 (477)
T PRK08289 335 GRSAPLNMVITETGAAKAVAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYT 414 (477)
T ss_pred cceeeeeeEecCCChhhhhhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 49999999999
Q ss_pred cc-ceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 244 ED-EVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 244 e~-~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
++ |+||+||+|++||+|||+.+|+++ |+++|+++||||||||||||+|++.||++.
T Consensus 415 ~~~~lVSsDfig~~~SsI~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~ 471 (477)
T PRK08289 415 DSTEVVSSDFVGSRHAGVVDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGV 471 (477)
T ss_pred ccCCeeeeeecCCCchhheehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhc
Confidence 99 799999999999999999999998 799999999999999999999999999764
No 15
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=6.5e-96 Score=695.79 Aligned_cols=281 Identities=36% Similarity=0.613 Sum_probs=273.2
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-+|+|||+||+|+++|+++|+.|.|||+.|+++++++|++++|++.|+|+||||||.|.+++++++|+++||++|++|+|
T Consensus 43 yll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 43 HLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred HHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-C-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 SA-D-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s~-d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
.. | .++||||||++.|+..++||||||||||||+|++|+||++|||+++.||||||+|++|+++|+++ ++||++|.+
T Consensus 123 ~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a 201 (325)
T TIGR01532 123 GASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAA 201 (325)
T ss_pred CcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHHHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchH
Confidence 65 3 35899999999998878899999999999999999999999999999999999999999999985 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++++++||||+|+||++++||||||++||++||++++++++++||++++|+++++++|||||+|+++|+|
T Consensus 202 ~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~v 281 (325)
T TIGR01532 202 SQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLV 281 (325)
T ss_pred hhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHH
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVD 292 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d 292 (301)
|+||+|++||+|||+.+|++++++++|+++||||||||||||+|
T Consensus 282 S~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d 325 (325)
T TIGR01532 282 SCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEWGFANRMLD 325 (325)
T ss_pred ccccCCCCcceEEEcccCEEecCCEEEEEEEeCCcceeeeEccC
Confidence 99999999999999999999999999999999999999999987
No 16
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-94 Score=676.91 Aligned_cols=288 Identities=59% Similarity=0.844 Sum_probs=281.4
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHC-CCCeEEecC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAG-GAKKVIISA 89 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~a-Gak~ViIsa 89 (301)
.+|+|||+||+|+++|+.+++.+.|+|+.|+++.+++|+.+||.++|+|+|+||||.|+++|.+++|+++ |||||++|+
T Consensus 43 ~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isa 122 (335)
T COG0057 43 HLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISA 122 (335)
T ss_pred HHHhhcccCCCCCCcccccCCeEEECCceEEEEecCChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred CCCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 90 PSAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 90 ps~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
|+++ +++||+|||++.|++.+.||||+|||||||+|++|+|+++|||++++|||+|++|++|+++|+|| ++|||+|++
T Consensus 123 p~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa 201 (335)
T COG0057 123 PGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAA 201 (335)
T ss_pred CCCCCccEEEEeccccccCCCCcEEEEccchhhhhHHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccc
Confidence 9987 99999999999999989999999999999999999999999999999999999999999999996 789999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++|++++|||+|+||++|+++||||+++|+.||+++++|++++||||++|++|+++.|||+++|+|+|+|
T Consensus 202 ~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~V 281 (335)
T COG0057 202 ALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLV 281 (335)
T ss_pred cCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
|+||+|++||+|||+.+|.+++++++|+++||||||||++|++|+..++..
T Consensus 282 s~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~gys~r~vD~~~~~~~ 332 (335)
T COG0057 282 SSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAK 332 (335)
T ss_pred ccccCCCcceeEEEccceEeccCcEEEEEEEEeccccchHHHHHHHHHHhh
Confidence 999999999999999999999889999999999999999999999888764
No 17
>KOG0657|consensus
Probab=100.00 E-value=6.7e-84 Score=588.44 Aligned_cols=259 Identities=69% Similarity=1.022 Sum_probs=252.7
Q ss_pred CccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecC
Q psy6885 10 PARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISA 89 (301)
Q Consensus 10 ~~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsa 89 (301)
--||+|||+||+|.|+++.++.+++++|++|.++++++|..++|.+.|+|+|+|+||.|.+.+.+.+|+++||||||||+
T Consensus 27 ~y~~kydsthG~f~g~~k~~~~~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisa 106 (285)
T KOG0657|consen 27 AYMLKYDSTHGKFHGTVKAENFKLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVIISA 106 (285)
T ss_pred cccccccccCCccccceeecCCceeecCceEEeecccCcccCccccccceeEeeccccccccccccccccccceEEEecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccc
Q psy6885 90 PSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 169 (301)
Q Consensus 90 ps~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a 169 (301)
|++|.|++|+|||+++|+++..||||+|||||||+|+.|+|||+|||++++|||+|+++++|+++|||+.++||.+|.+.
T Consensus 107 ps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~ 186 (285)
T KOG0657|consen 107 PSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRAL 186 (285)
T ss_pred ccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeeccccccccCcccccccccchhh
Confidence 99999999999999999997779999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceee
Q psy6885 170 QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVS 249 (301)
Q Consensus 170 ~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS 249 (301)
|||||.+||++|+++|+||||+||++||++||||+ ++.+||+++++++.++|+++++++++++++||||| ||+
T Consensus 187 qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~~~~lkGIL--te~---- 259 (285)
T KOG0657|consen 187 QNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLASEIPLKGIL--TEH---- 259 (285)
T ss_pred hccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhhcccccccc--ccc----
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999 877
Q ss_pred ecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 250 SDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 250 ~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
+| ++|||||||||+|++||+.||+++
T Consensus 260 ----------------------~f---ISWYDNE~GYS~rVvDl~~h~ask 285 (285)
T KOG0657|consen 260 ----------------------HF---ISWYDNEFGYSNRVVDLMEHMASK 285 (285)
T ss_pred ----------------------ce---eeeeccccccchHHHHHHHHHhcC
Confidence 44 899999999999999999999875
No 18
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=9.1e-51 Score=350.31 Aligned_cols=157 Identities=66% Similarity=1.001 Sum_probs=152.8
Q ss_pred ccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccccccccCCCchhhhhhhhccccCCceeEEEEeee
Q psy6885 123 LAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVP 202 (301)
Q Consensus 123 Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVP 202 (301)
|+|++|+|+++|||+++.|||+|+++++|+++|+++ +|||++|++++||||++||+++++++|||+|+||++++++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 789999999999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred eeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEe
Q psy6885 203 VANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWY 280 (301)
Q Consensus 203 v~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~Wy 280 (301)
|+++|+.||+++++|++++|||+++|+++++++++||++|+|+|+||+||+|++||+|||..++++++|+++|+++||
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 19
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=8.7e-43 Score=331.97 Aligned_cols=196 Identities=22% Similarity=0.199 Sum_probs=175.5
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
.|+||+.|+.+..+++.++..+.++|+ ++++. .++|+|++|||.+..++.+..|+++|+|+|++++|+
T Consensus 42 ~lgyds~~~~~~~~~~~~~~~l~v~g~---------~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 42 ELGIPVYAASEEFIPRFEEAGIEVAGT---------LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred HhCCCEEeecCCcceEeccCceEecCC---------HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCC
Confidence 467999994444478888888888875 22332 279999999999999999999999999999999999
Q ss_pred CC--CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccc
Q psy6885 92 AD--APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 169 (301)
Q Consensus 92 ~d--~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a 169 (301)
+| .++||+|+|++.|...+ ||||+|||||||+|++|+|+++|||+++.|||+|+ +++| +|+||+| +
T Consensus 110 ~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~Lap~~~~L~~~fGI~~~~~Ttvh~-t~dq--------~d~rrgr--~ 177 (333)
T TIGR01546 110 AEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLVRTLNAINDYSKVDKVRAVMVRR-AADP--------NDVKKGP--I 177 (333)
T ss_pred CCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHHHHHHHHHHhcCeEEEEEEEEee-cCCh--------hhhccCc--h
Confidence 87 46899999999998654 99999999999999999999999999999999997 9888 3789999 6
Q ss_pred cccccC-CC---chhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhc
Q psy6885 170 QNIIPA-AT---GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAE 233 (301)
Q Consensus 170 ~NIIP~-~t---G~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~ 233 (301)
+||||+ +| +.++++++|||+|+ ++++++||||+++|+.||++++++++++|||+++|++++.
T Consensus 178 ~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 178 NAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred hceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 999999 45 67999999999996 9999999999999999999999999999999999999874
No 20
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-42 Score=323.91 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=175.1
Q ss_pred CCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCe
Q psy6885 22 SPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPM 96 (301)
Q Consensus 22 ~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~pl 96 (301)
|.+...+.|+++.|+|+++.| ++++..+|. |+|+||| +|...++++++.+.++|| +|||++| +|+||
T Consensus 35 ~~s~~~s~gk~i~f~g~~~~V---~~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPL 106 (322)
T PRK06901 35 VEIEPFGEEQGIRFNNKAVEQ---IAPEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPV 106 (322)
T ss_pred cccccccCCCEEEECCEEEEE---EECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCe
Confidence 345557889999999999999 556677786 8999999 999999999999999999 9999997 47999
Q ss_pred EEecCCcCCCCC--CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc------------cccCCCCCCc
Q psy6885 97 FVCGVNLDAYDP--SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK------------TVDGPSGKLW 162 (301)
Q Consensus 97 vV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~------------~lD~~~~~d~ 162 (301)
+|||||++.+.. .++||+||||||.+|+++|+|||+.|||+++.+|||||+||+++ ++++...+
T Consensus 107 VVPEVN~e~l~~~~~~~IIanPNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~-- 184 (322)
T PRK06901 107 VVPSVNDEQLAELRQRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLD-- 184 (322)
T ss_pred ecccCCHHHHhcCcCCCEEECCcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCC--
Confidence 999999999876 36899999999999999999999999999999999999999753 23332111
Q ss_pred ccccccccccccCCC-chhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhh
Q psy6885 163 RDGRGAAQNIIPAAT-GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAA 232 (301)
Q Consensus 163 r~~r~~a~NIIP~~t-G~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~ 232 (301)
...+++|||+||+.. |-..|.+||||+| .++++||+||||++||++.++++++++++.++++++|++++
T Consensus 185 ~~~~~iAFNviP~ig~~m~~EtrKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~ 254 (322)
T PRK06901 185 EEEQRLAFDVFPANAQNLELQLQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNN 254 (322)
T ss_pred CCceeeeccccccCCccHHHHHHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCC
Confidence 224899999999994 6678899999766 37999999999999999999999999999999999999876
No 21
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-38 Score=296.96 Aligned_cols=254 Identities=22% Similarity=0.215 Sum_probs=188.1
Q ss_pred EecCCc-eEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEec
Q psy6885 27 FSCKWP-PVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCG 100 (301)
Q Consensus 27 ~a~~~~-l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~g 100 (301)
++.|++ +.|+|+.+.+.. .-.+.++|. ++||||+|.|...++++++++.++|| +|||++| +|+|+||||
T Consensus 38 rSaG~~~~~f~~~~~~v~~-~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPe 112 (334)
T COG0136 38 RSAGKKYIEFGGKSIGVPE-DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPE 112 (334)
T ss_pred cccCCccccccCccccCcc-ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCC
Confidence 456766 999999877721 116677887 89999999999999999999999998 9999998 489999999
Q ss_pred CCcCCCCCC--cc-EEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc-cccCC---------CCCCcccccc
Q psy6885 101 VNLDAYDPS--FK-VISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK-TVDGP---------SGKLWRDGRG 167 (301)
Q Consensus 101 VN~~~~~~~--~~-IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~-~lD~~---------~~~d~r~~r~ 167 (301)
||++.+... ++ ||+||||||.+|+++||||+++|||+++.+|||||+||++. .++.. ...-.-.+++
T Consensus 113 VN~~~l~~~~~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~ 192 (334)
T COG0136 113 VNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYP 192 (334)
T ss_pred cCHHHHHhhhhCCCEEECCChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCccccccccc
Confidence 999997652 35 99999999999999999999999999999999999999865 22210 0011112789
Q ss_pred cccccccCCC-----chhhhhh-------hhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCC
Q psy6885 168 AAQNIIPAAT-----GAAKAVG-------KVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGP 235 (301)
Q Consensus 168 ~a~NIIP~~t-----G~ak~~~-------kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~ 235 (301)
+|||+||++. |++||+. |||+....+++++|+||||++||++.++++++++++.+|+.+.+-..+ |
T Consensus 193 iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~a--p 270 (334)
T COG0136 193 LAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSA--P 270 (334)
T ss_pred ccccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccC--C
Confidence 9999999985 4666554 677766789999999999999999999999999999999996653322 2
Q ss_pred CCcccccc-ccceeeecCCCCccceEeeCCCCee-eeCCeEEEEEEecC-Cchhhhh
Q psy6885 236 LAGILGYT-EDEVVSSDFIGDTHSSIFDAQAGIP-LNGKFVKLISWYDN-EYGYSNR 289 (301)
Q Consensus 236 lkgil~~~-e~~~VS~D~~~~~~s~i~d~~~~~~-~~~~~~kl~~WyDN-E~gy~~r 289 (301)
..-+..-. +.|+.-.|-.|.. .++-++...- ..++.+++..==|| -||=|--
T Consensus 271 ~v~v~~~~~~~P~~~~d~~g~~--~v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~ 325 (334)
T COG0136 271 GVVVVDNPEDRPQTPLDATGGD--EVSVGRIRKDLSGPEGLKLWVVGDNLRKGAALN 325 (334)
T ss_pred CcEEEeCCccCccChhhhcCCC--ceEEeEeeecCCCCCcEEEEEEechhhhhhHHH
Confidence 22222222 2455555666655 2333332211 12344666555676 3554433
No 22
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=4.3e-38 Score=302.57 Aligned_cols=205 Identities=19% Similarity=0.163 Sum_probs=169.8
Q ss_pred CceEEecCCceEECCEEEEEEecCCCCCC-CcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCe
Q psy6885 23 PSTFFSCKWPPVVNGNKIAVHSERDPKDI-PWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPM 96 (301)
Q Consensus 23 ~~~v~a~~~~l~i~gk~I~v~~~~~~~~~-~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~pl 96 (301)
-++=++.|+.+.|+|+.+.| ++.+.+ .|. ++|+||+|+|...++++++++.++|+..+|||++| +|+||
T Consensus 34 ~ss~~s~g~~~~f~~~~~~v---~~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPL 108 (366)
T TIGR01745 34 FSTSQLGQAAPSFGGTTGTL---QDAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVI 108 (366)
T ss_pred EEchhhCCCcCCCCCCcceE---EcCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCE
Confidence 34447788999999998877 444444 565 89999999999999999999999994339999997 47999
Q ss_pred EEecCCcCCCCCC--ccE--EecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc------------cccC----
Q psy6885 97 FVCGVNLDAYDPS--FKV--ISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK------------TVDG---- 156 (301)
Q Consensus 97 vV~gVN~~~~~~~--~~I--Vsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~------------~lD~---- 156 (301)
||||||++.++.. ++| |+||||||++|+++|+|||+.|||+++.+|||||+||+++ ++++
T Consensus 109 VVPeVN~~~i~~~~~~gi~~ianPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~ 188 (366)
T TIGR01745 109 ILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDE 188 (366)
T ss_pred EeCCcCHHHHHhHHhCCcCeEECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhcccccc
Confidence 9999999988753 567 8999999999999999999999999999999999999863 1221
Q ss_pred ----C-----------------CCCCcccccccccccccCCC-----chhhhh-------hhhccc-cCCceeEEEEeee
Q psy6885 157 ----P-----------------SGKLWRDGRGAAQNIIPAAT-----GAAKAV-------GKVIPA-LNGKLTGMAFRVP 202 (301)
Q Consensus 157 ----~-----------------~~~d~r~~r~~a~NIIP~~t-----G~ak~~-------~kvlpe-l~gkv~~~~vRVP 202 (301)
. ..+...+++++|||+||++. |+++|+ +|||.. -..++++||+|||
T Consensus 189 ~~~~~~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVP 268 (366)
T TIGR01745 189 LATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIG 268 (366)
T ss_pred ccccchhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecc
Confidence 0 11233568999999999973 666554 467733 2458999999999
Q ss_pred eeeeeEeEEEEEecCCCCHHHHHHHHHHhh
Q psy6885 203 VANVSVVDLTVRLGKDATYDEIKAKVKAAA 232 (301)
Q Consensus 203 v~~gs~~dl~~~~~k~~~~eei~~~l~~a~ 232 (301)
|++||++.++++++++++.++++++|+++.
T Consensus 269 V~~gHs~sv~ve~~~~vs~e~i~~~L~~~~ 298 (366)
T TIGR01745 269 ALRCHSQAFTIKLKKDVSLETIEEIIRAHN 298 (366)
T ss_pred eeccEEEEEEEEECCCCCHHHHHHHHHhCC
Confidence 999999999999999999999999999853
No 23
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1e-36 Score=292.15 Aligned_cols=214 Identities=21% Similarity=0.224 Sum_probs=168.3
Q ss_pred eccCCCCCCceEE-ecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-
Q psy6885 15 SDEDDLKSPSTFF-SCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA- 92 (301)
Q Consensus 15 ~d~~~g~~~~~v~-a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~- 92 (301)
|| .||+++..++ .++..+.+.+. ++.+ + .++|+||||||.+.+++.+..|+++| ++||+++|..
T Consensus 48 ~~-~~~~~~~~~~~~~~~~i~V~~~---------~~el-~--~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~ 113 (341)
T PRK04207 48 YP-LYVADPEREKAFEEAGIPVAGT---------IEDL-L--EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA 113 (341)
T ss_pred CC-ccccCccccccccCCceEEcCC---------hhHh-h--ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC
Confidence 56 7888887776 44444544443 2222 2 27999999999999999999999999 6788888863
Q ss_pred CCC--eEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccccc
Q psy6885 93 DAP--MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQ 170 (301)
Q Consensus 93 d~p--lvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~ 170 (301)
++| .||||||++.+... ++|+|||||||||+|+||+|+++|||+++.|||||++|+ + ++++ |+++.
T Consensus 114 ~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT~~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~~--r~~~~ 181 (341)
T PRK04207 114 EVAGVSFNALANYEEALGK-DYVRVVSCNTTGLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEVK--RGPIN 181 (341)
T ss_pred CCCCCcEEeeECHHHhCCC-CcEEccChHHHHHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chhh--HHHhc
Confidence 344 37999999999753 499999999999999999999999999999999999883 2 3443 78999
Q ss_pred ccccCC----CchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC----CCCccccc
Q psy6885 171 NIIPAA----TGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG----PLAGILGY 242 (301)
Q Consensus 171 NIIP~~----tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~----~lkgil~~ 242 (301)
||+|.. +...+++++++|+|+ ++++|+||||++||+.++++++++++++||++++|++++.- .-.|+.+
T Consensus 182 niip~p~~~~~~~g~~v~~vlp~l~--i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s- 258 (341)
T PRK04207 182 AIVPDPVTVPSHHGPDVKTVLPDLD--ITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS- 258 (341)
T ss_pred CcCCCCCCCCCCchhHHHhhCCCCc--eEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-
Confidence 999852 344589999999995 99999999999999999999999999999999999998742 2245555
Q ss_pred cccceeeecCCCCcc
Q psy6885 243 TEDEVVSSDFIGDTH 257 (301)
Q Consensus 243 ~e~~~VS~D~~~~~~ 257 (301)
+++++--.+=.+.|+
T Consensus 259 ~~~~~~~~~~~~rp~ 273 (341)
T PRK04207 259 TAELIEYARDLGRPR 273 (341)
T ss_pred hHHHhHHHHHcCCCc
Confidence 555543333344444
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=2.2e-36 Score=289.64 Aligned_cols=199 Identities=23% Similarity=0.307 Sum_probs=170.3
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gV 101 (301)
.+.|+.+.+.|+.+.+. +.+...|. ++|+||+|+|.+.+++++++|+++|+ +|||.++ +|+|++||||
T Consensus 36 ~~~g~~~~~~~~~~~~~---~~~~~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpev 108 (339)
T TIGR01296 36 RSAGRKVTFKGKELEVN---EAKIESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEV 108 (339)
T ss_pred ccCCCeeeeCCeeEEEE---eCChHHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCc
Confidence 45677788888776662 22333453 89999999999999999999999999 7898875 2589999999
Q ss_pred CcCCCCC--CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccc------------cccccCCCCCC------
Q psy6885 102 NLDAYDP--SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT------------QKTVDGPSGKL------ 161 (301)
Q Consensus 102 N~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~------------q~~lD~~~~~d------ 161 (301)
|++.++. .++|||||+|+|+|++++|+||+++|+|+++.|||+|++||+ |++++++....
T Consensus 109 N~~~i~~~~~~~iianp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~ 188 (339)
T TIGR01296 109 NLEDLKEFNTKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPK 188 (339)
T ss_pred CHHHHhhCccCCEEECCCcHHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccc
Confidence 9999876 256999999999999999999999999999999999999996 44466554222
Q ss_pred -cccccccccccccCC-----CchhhhhhhhccccC-------CceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHH
Q psy6885 162 -WRDGRGAAQNIIPAA-----TGAAKAVGKVIPALN-------GKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKV 228 (301)
Q Consensus 162 -~r~~r~~a~NIIP~~-----tG~ak~~~kvlpel~-------gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l 228 (301)
.+++|++++||||++ +|+++|+.|+.|||+ .+++++|+||||++||+.+++++++++++.++++++|
T Consensus 189 ~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l 268 (339)
T TIGR01296 189 AKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELL 268 (339)
T ss_pred cccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHH
Confidence 789999999999995 688999999988875 4799999999999999999999999999999999999
Q ss_pred HHhh
Q psy6885 229 KAAA 232 (301)
Q Consensus 229 ~~a~ 232 (301)
++++
T Consensus 269 ~~~~ 272 (339)
T TIGR01296 269 KNAP 272 (339)
T ss_pred hcCC
Confidence 9653
No 25
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-36 Score=286.25 Aligned_cols=196 Identities=24% Similarity=0.327 Sum_probs=170.2
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-----CCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-----DAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~-----d~plvV~gV 101 (301)
.+.++.+.++|+.+.+ .+++..+|. ++|+||+|+|.+.+++++++|+++|+ +|||.+++ ++|+++|||
T Consensus 38 ~~~g~~l~~~g~~i~v---~d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpev 110 (334)
T PRK14874 38 RSAGKELSFKGKELKV---EDLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEV 110 (334)
T ss_pred ccCCCeeeeCCceeEE---eeCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCc
Confidence 3456777788877777 345556785 89999999999999999999999999 88977762 589999999
Q ss_pred CcCCCCCC--ccEEecCCcchhhccchhhhhhhccCeeEEEEeeeecccc------------ccccccCCC--CCCcccc
Q psy6885 102 NLDAYDPS--FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTA------------TQKTVDGPS--GKLWRDG 165 (301)
Q Consensus 102 N~~~~~~~--~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~------------~q~~lD~~~--~~d~r~~ 165 (301)
|++.++.. ++|||||+|+|+|++|+|+||+++|+|+++.|||+|++|| +|..+|+++ .+++|++
T Consensus 111 n~~~i~~~~~~~iVanp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (334)
T PRK14874 111 NPEALAEHRKKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFP 190 (334)
T ss_pred CHHHHhhhhcCCeEECccHHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccC
Confidence 99999764 4799999999999999999999999999999999999997 455677543 4788999
Q ss_pred cccccccccCC-----Cchhhh-------hhhhc--cccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHh
Q psy6885 166 RGAAQNIIPAA-----TGAAKA-------VGKVI--PALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAA 231 (301)
Q Consensus 166 r~~a~NIIP~~-----tG~ak~-------~~kvl--pel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a 231 (301)
|++++|++|+. +|.++| +.|++ |++ +++++|+||||++||+.+++++++++++.+|++++|+++
T Consensus 191 ~~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~ 268 (334)
T PRK14874 191 KPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA 268 (334)
T ss_pred ccccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC
Confidence 99999999997 677666 46676 776 699999999999999999999999999999999999984
No 26
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-34 Score=278.10 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=166.3
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gV 101 (301)
++.|+++.++|+.+.+.. .+++ .|. ++|+||+|+|...++++++++.++|+ +|||+++ +|+|++||||
T Consensus 43 ~saGk~~~~~~~~l~v~~-~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEv 115 (347)
T PRK06728 43 RSAGKTVQFKGREIIIQE-AKIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEV 115 (347)
T ss_pred ccCCCCeeeCCcceEEEe-CCHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCc
Confidence 567899999998877732 3443 454 79999999999999999999999998 8999886 3799999999
Q ss_pred CcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc------------cccCCCCCCcccc----
Q psy6885 102 NLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK------------TVDGPSGKLWRDG---- 165 (301)
Q Consensus 102 N~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~------------~lD~~~~~d~r~~---- 165 (301)
|++.+...++||+||+|+|++++.+|+||+++++|+++.++|||++||+++ ++++...+...++
T Consensus 116 N~e~i~~~~~iIanPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~ 195 (347)
T PRK06728 116 NAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKD 195 (347)
T ss_pred CHHHHhccCCEEECCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCcccccccccc
Confidence 999987644799999999999999999999999999999999999999754 3333222233456
Q ss_pred ---cccccccccCC-----Cchhhh-------hhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHH
Q psy6885 166 ---RGAAQNIIPAA-----TGAAKA-------VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKA 230 (301)
Q Consensus 166 ---r~~a~NIIP~~-----tG~ak~-------~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~ 230 (301)
++++||+||+. +|+++| .+|||..-..++++||+||||++||++.++++|+++++.++++++|++
T Consensus 196 ~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~ 275 (347)
T PRK06728 196 KKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFD 275 (347)
T ss_pred ccCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHc
Confidence 99999999997 465554 456773223479999999999999999999999999999999999987
Q ss_pred hh
Q psy6885 231 AA 232 (301)
Q Consensus 231 a~ 232 (301)
++
T Consensus 276 ~~ 277 (347)
T PRK06728 276 AP 277 (347)
T ss_pred CC
Confidence 64
No 27
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-34 Score=276.04 Aligned_cols=202 Identities=20% Similarity=0.154 Sum_probs=164.6
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gV 101 (301)
.+.+..+.|+|+.+.++...+++ +|. ++|+||+|+|...++++++++.++|++.+|||+++ +|+|++||||
T Consensus 39 ~sg~~~~~f~g~~~~v~~~~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEv 114 (369)
T PRK06598 39 QAGGAAPSFGGKEGTLQDAFDID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPV 114 (369)
T ss_pred hhCCcccccCCCcceEEecCChh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCc
Confidence 45566678999888775433333 354 79999999999999999999999995558999997 4799999999
Q ss_pred CcCCCCCC--c--cEEecCCcchhhccchhhhhhhccCeeEEEEeeeecccccccc------------cc----------
Q psy6885 102 NLDAYDPS--F--KVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT------------VD---------- 155 (301)
Q Consensus 102 N~~~~~~~--~--~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~------------lD---------- 155 (301)
|++.+... + ++|+||+|+|++++++|+||++.++|+++.++|||++||+++- ++
T Consensus 115 N~e~i~~~~~~g~~iIanPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~ 194 (369)
T PRK06598 115 NRDVIDDALANGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPA 194 (369)
T ss_pred CHHHHHhhhhcCCCEEEcCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccc
Confidence 99988652 2 4899999999999999999999999999999999999997652 11
Q ss_pred ---------------CCCCCCcccccccccccccCC-----Cchhhhh-------hhhccc--cCCceeEEEEeeeeeee
Q psy6885 156 ---------------GPSGKLWRDGRGAAQNIIPAA-----TGAAKAV-------GKVIPA--LNGKLTGMAFRVPVANV 206 (301)
Q Consensus 156 ---------------~~~~~d~r~~r~~a~NIIP~~-----tG~ak~~-------~kvlpe--l~gkv~~~~vRVPv~~g 206 (301)
+...+...+++++|||+||++ +|+++|+ +|||.. -+.++++||+||||++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~g 274 (369)
T PRK06598 195 SAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRC 274 (369)
T ss_pred hhhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceecc
Confidence 111122346789999999997 4766554 467732 23479999999999999
Q ss_pred eEeEEEEEecCCCCHHHHHHHHHHhh
Q psy6885 207 SVVDLTVRLGKDATYDEIKAKVKAAA 232 (301)
Q Consensus 207 s~~dl~~~~~k~~~~eei~~~l~~a~ 232 (301)
|++.++++|+++++.++++++|+++.
T Consensus 275 Hs~sv~ve~~~~~~~~~i~~~L~~~~ 300 (369)
T PRK06598 275 HSQALTIKLKKDVPLAEIEEILAAHN 300 (369)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999854
No 28
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.97 E-value=7.9e-32 Score=230.59 Aligned_cols=108 Identities=52% Similarity=0.731 Sum_probs=103.8
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-||+|||+||+|+++|+.+++.|.+||+.|.++++++|+++||+++|+|+|+||||.|.+++.++.|+++||||||||+|
T Consensus 41 ~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap 120 (149)
T smart00846 41 HLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAP 120 (149)
T ss_pred HHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CeEEecCCcCCCCCCccEEecCCc
Q psy6885 91 SADA-PMFVCGVNLDAYDPSFKVISNASC 118 (301)
Q Consensus 91 s~d~-plvV~gVN~~~~~~~~~IVsn~sC 118 (301)
++|+ ++||+|||++.|+++++||||+||
T Consensus 121 ~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 121 AKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred CCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9874 599999999999987779999999
No 29
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.97 E-value=4.5e-32 Score=232.54 Aligned_cols=107 Identities=52% Similarity=0.767 Sum_probs=100.4
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
.|||||+||+|+++|+.+++.|.++|+.|+++++++|+++||+++|+|+|+||||.|++++.++.|+++||||||+|+|+
T Consensus 43 LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~ 122 (151)
T PF00044_consen 43 LLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPS 122 (151)
T ss_dssp HHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-
T ss_pred hhhccccccceecccccccceeEeecccccchhhhhhcccccccccccEEEeccccceecccccccccccccceeecccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCeEEecCCcCCCCCCccEEecCCc
Q psy6885 92 AD--APMFVCGVNLDAYDPSFKVISNASC 118 (301)
Q Consensus 92 ~d--~plvV~gVN~~~~~~~~~IVsn~sC 118 (301)
+| +|+||+|||++.|+++++|||++||
T Consensus 123 ~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 123 KDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred ccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 86 8999999999999997799999999
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.96 E-value=5.3e-29 Score=238.27 Aligned_cols=198 Identities=18% Similarity=0.183 Sum_probs=163.0
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gV 101 (301)
.+.|+.+.++|+.+.+. +++.++|. ++|+||+|++.-.++++++..+++|+ +|||+++ +++|+++|||
T Consensus 41 ~saG~~~~~~~~~~~v~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEv 113 (336)
T PRK08040 41 ESAGETLRFGGKSVTVQ---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEV 113 (336)
T ss_pred CcCCceEEECCcceEEE---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEcccc
Confidence 45688898999877773 56778886 79999999999999999999999999 7888886 3689999999
Q ss_pred CcCCCCC--CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc------------cccCCCCCCcccccc
Q psy6885 102 NLDAYDP--SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK------------TVDGPSGKLWRDGRG 167 (301)
Q Consensus 102 N~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~------------~lD~~~~~d~r~~r~ 167 (301)
|.+.++. ..+||+||+|+|++++..|+||+++++|+++.|+|+|++||+++ +++|.+.+...++++
T Consensus 114 n~~~l~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~ 193 (336)
T PRK08040 114 NPFVLADYRNRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQ 193 (336)
T ss_pred CHHHHhhhccCCEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchh
Confidence 9955543 46799999999999999999999999999999999999999865 233322223467888
Q ss_pred cccccccCCCc---hhh-------hhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHh
Q psy6885 168 AAQNIIPAATG---AAK-------AVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAA 231 (301)
Q Consensus 168 ~a~NIIP~~tG---~ak-------~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a 231 (301)
+++|++|++.+ ... |++|+|..-+.+++.||+||||++||+..++++++++++.++++++|+++
T Consensus 194 i~~N~~pyi~~~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~ 267 (336)
T PRK08040 194 LAFNMLPLLPDSEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQG 267 (336)
T ss_pred hcCceeeccCCcCCcchHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 99999999532 332 34455521233599999999999999999999999999999999999984
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.96 E-value=1.6e-28 Score=235.15 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=183.3
Q ss_pred ecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC----CCCCeEEecCCc
Q psy6885 28 SCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS----ADAPMFVCGVNL 103 (301)
Q Consensus 28 a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps----~d~plvV~gVN~ 103 (301)
+.|+.+.++|+.+.+ .+++..+|. ++|+||+|++...++++++.++++|+ +|||.++ +++|+++||||.
T Consensus 42 ~aG~~l~~~~~~l~~---~~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~ 114 (336)
T PRK05671 42 SAGHSVPFAGKNLRV---REVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNA 114 (336)
T ss_pred cCCCeeccCCcceEE---eeCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCH
Confidence 447778888876666 334444564 89999999999999999999999998 6787776 379999999999
Q ss_pred CCCCC--CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeecccccccc-c-----------cCCCCCCcccccccc
Q psy6885 104 DAYDP--SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT-V-----------DGPSGKLWRDGRGAA 169 (301)
Q Consensus 104 ~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~-l-----------D~~~~~d~r~~r~~a 169 (301)
+.++. ..+||+||+|+|++++.+|+||++.++++++.++|+|++||+++- . ++...+...+++++|
T Consensus 115 ~~i~~~~~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~ia 194 (336)
T PRK05671 115 ERLASLAAPFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVA 194 (336)
T ss_pred HHHccccCCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccc
Confidence 98875 258999999999999999999999999999999999999997652 1 111112335789999
Q ss_pred cccccCCC-----chhhhhhhhccc-------cCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCC
Q psy6885 170 QNIIPAAT-----GAAKAVGKVIPA-------LNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLA 237 (301)
Q Consensus 170 ~NIIP~~t-----G~ak~~~kvlpe-------l~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lk 237 (301)
||++|+.. |.++|+.|..|| .+.+++.||+||||++||+..++++++++++.++++++|++++
T Consensus 195 fn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~----- 269 (336)
T PRK05671 195 FNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP----- 269 (336)
T ss_pred cccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC-----
Confidence 99999974 665555544433 2446999999999999999999999999999999999999543
Q ss_pred cccccccc--ceeeecCCCCccceEeeCCCCee--eeCCeEEEEEEecCCc-hhhhhHHHHHHHH
Q psy6885 238 GILGYTED--EVVSSDFIGDTHSSIFDAQAGIP--LNGKFVKLISWYDNEY-GYSNRVVDLIKYI 297 (301)
Q Consensus 238 gil~~~e~--~~VS~D~~~~~~s~i~d~~~~~~--~~~~~~kl~~WyDNE~-gy~~r~~d~~~~~ 297 (301)
+|--+.++ |-.-.|..|..+-.| +.... -.++.+.+.+=-||=. |=|-.-+-.+..+
T Consensus 270 ~v~v~~~~~~p~~~~~v~g~~~~~v---g~~~~~~~~~~~l~~~~~~DNL~kGAA~~AVq~~~~l 331 (336)
T PRK05671 270 GIELVEAGDYPTPVGDAVGQDVVYV---GRVRAGVDDPCQLNLWLTSDNVRKGAALNAVQVAELL 331 (336)
T ss_pred CeEEeCCCCCCCChHHcCCCCeEEE---EEEEecCCCCCEEEEEEEehhHHHHHHHHHHHHHHHH
Confidence 22212221 221124455543221 11110 1234455655578853 4555555555443
No 32
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.95 E-value=1.4e-27 Score=229.27 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=159.3
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gV 101 (301)
++.|+.+.++|+.+.+. ..++ ..|. ++|+||+|+|...+++++++..++|| +|||+++ +++|+++|||
T Consensus 44 rsaGk~~~~~~~~~~v~-~~~~--~~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEv 116 (344)
T PLN02383 44 RSAGKKVTFEGRDYTVE-ELTE--DSFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEV 116 (344)
T ss_pred CCCCCeeeecCceeEEE-eCCH--HHHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCc
Confidence 55678888888766652 2222 2353 79999999999999999999989998 7888886 3699999999
Q ss_pred CcCCCCCC------ccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc------------cccCCCCCCcc
Q psy6885 102 NLDAYDPS------FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK------------TVDGPSGKLWR 163 (301)
Q Consensus 102 N~~~~~~~------~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~------------~lD~~~~~d~r 163 (301)
|.+.++.. .+||+||+|+|++++..|+||+++++|+++.++|||++||+++ ++++......+
T Consensus 117 n~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~ 196 (344)
T PLN02383 117 NPEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNI 196 (344)
T ss_pred CHHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhc
Confidence 99988752 3499999999999999999999999999999999999999765 22221113346
Q ss_pred cccccccccccCCC-----chhhhh-------hhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHh
Q psy6885 164 DGRGAAQNIIPAAT-----GAAKAV-------GKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAA 231 (301)
Q Consensus 164 ~~r~~a~NIIP~~t-----G~ak~~-------~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a 231 (301)
++.+.|+|++|+.. |+++++ +|++-.-+.+++.||+||||++||+..++++++++++.++++++|+++
T Consensus 197 ~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~ 276 (344)
T PLN02383 197 FAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASA 276 (344)
T ss_pred cCCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 78899999999973 444333 355522234699999999999999999999999999999999999973
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.93 E-value=1.9e-25 Score=214.12 Aligned_cols=228 Identities=20% Similarity=0.206 Sum_probs=172.2
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecCCcCCCCC---------CccEEecCCcchhh
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDAYDP---------SFKVISNASCTTNC 122 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gVN~~~~~~---------~~~IVsn~sCtT~~ 122 (301)
++|+||+|++...+.+.+....++|++ +|+.++ +++|+++|++|++.|.. ..+||+||+|+|+|
T Consensus 73 ~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t~ 150 (341)
T TIGR00978 73 DVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAG 150 (341)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHHH
Confidence 799999999999999999988899994 454443 36899999999986653 12599999999999
Q ss_pred ccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccccccccCCCchh----hhhhhhccccCC------
Q psy6885 123 LAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA----KAVGKVIPALNG------ 192 (301)
Q Consensus 123 Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~a----k~~~kvlpel~g------ 192 (301)
++++|+||+++++|+++.|||+|++||+|+... . .+.+++|++|+..+.. .|+.++|+.+.+
T Consensus 151 ~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~~~ 222 (341)
T TIGR00978 151 LTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKILGKLENGKIEPA 222 (341)
T ss_pred HHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHhCccccCcccCC
Confidence 999999999999999999999999999986421 1 2458999999997652 567888887633
Q ss_pred --ceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeeec-CC-----------CCccc
Q psy6885 193 --KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSD-FI-----------GDTHS 258 (301)
Q Consensus 193 --kv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~D-~~-----------~~~~s 258 (301)
+++.+|+|||+++||+.+++++++++++.++++++++++.+.++...+.-+.+|+|-.. -. |..+.
T Consensus 223 ~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~p~~~~~~~~g~~~~ 302 (341)
T TIGR00978 223 PFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDEEDRPQPRLDRDAGGGMA 302 (341)
T ss_pred CceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEECCCCCCCCcceeeecCCCce
Confidence 59999999999999999999999999999999999999877655444445566666442 10 11111
Q ss_pred eEeeCCCCeeeeCCeEEEEEEecCC-chhhhhHHHHHHHH
Q psy6885 259 SIFDAQAGIPLNGKFVKLISWYDNE-YGYSNRVVDLIKYI 297 (301)
Q Consensus 259 ~i~d~~~~~~~~~~~~kl~~WyDNE-~gy~~r~~d~~~~~ 297 (301)
++.+ ...-+++.+.+++=-||= +|=|-+-|-.+.+|
T Consensus 303 --~~ig-~~~~~~~~l~~~~~~DNl~kGaA~~avq~~n~~ 339 (341)
T TIGR00978 303 --VTVG-RLREEGGSLKYVVLGHNLVRGAAGATLLNAELA 339 (341)
T ss_pred --EEEE-eEECCCCeEEEEEEEchHHHHHHHHHHHHHHHH
Confidence 1111 111124455666668884 56666666666655
No 34
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.92 E-value=9e-25 Score=210.09 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=139.5
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC---CCCCeEEecCCcCCCCC----------CccEEecCCcchhhc
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS---ADAPMFVCGVNLDAYDP----------SFKVISNASCTTNCL 123 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps---~d~plvV~gVN~~~~~~----------~~~IVsn~sCtT~~L 123 (301)
++|+||+|++...+.+.++...++|++.|..|+.. +++|++++++|++.|.. +.+|||||+|+|+|+
T Consensus 76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C~~t~~ 155 (349)
T PRK08664 76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGL 155 (349)
T ss_pred CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCHHHHHH
Confidence 78999999999999999888888898443333321 25789999999876632 126999999999999
Q ss_pred cchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccccccccCCCch--------hhhhhhh----ccccC
Q psy6885 124 APLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA--------AKAVGKV----IPALN 191 (301)
Q Consensus 124 ap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~--------ak~~~kv----lpel~ 191 (301)
+++|+||++ |||+++.|||+|++|++++-. +..+.+++|++|+..+. .+.++++ +|.++
T Consensus 156 ~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~--------~~~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~~ 226 (349)
T PRK08664 156 VLALKPLMD-FGIERVHVTTMQAISGAGYPG--------VPSMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPAD 226 (349)
T ss_pred HHHHHHHHH-CCCcEEEEEEEeccccCCccc--------chhhhhhcCcccccCchhhhhhHHHHHHhhhcccccccCCC
Confidence 999999999 999999999999999987431 22456999999999875 2344333 55568
Q ss_pred CceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhc
Q psy6885 192 GKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAE 233 (301)
Q Consensus 192 gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~ 233 (301)
.+++++++|||+++||+.+++++++++++.+|++++++++..
T Consensus 227 ~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 227 FPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred ceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 889999999999999999999999999999999999998765
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.87 E-value=2.8e-21 Score=185.65 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=160.4
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC------C------------------CCeEEecCCcCCCCCCccE
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA------D------------------APMFVCGVNLDAYDPSFKV 112 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~------d------------------~plvV~gVN~~~~~~~~~I 112 (301)
++|+||.|++...+.+.+..++++|+ .|||++++ | +|+.+||+|.+.++. .+|
T Consensus 68 ~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~-~~i 144 (343)
T PRK00436 68 GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKG-ARL 144 (343)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcC-CCE
Confidence 69999999999999999999999887 88887752 3 789999999998875 589
Q ss_pred EecCCcchhhccchhhhhhhccCee--EEEEeeeecccccccc-ccCCCCCCcccccccccccccCCCchhhhhhhhccc
Q psy6885 113 ISNASCTTNCLAPLAKVIHDNFEIV--EGLMTTVHATTATQKT-VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPA 189 (301)
Q Consensus 113 Vsn~sCtT~~Lap~lk~L~~~fgI~--~~~~TT~ha~s~~q~~-lD~~~~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpe 189 (301)
|+||+|+|++++.+|+||++..+|+ ++.++|++++||+++- .+..+.. .+.+.-.++|++|+.. ..|+.+.+..
T Consensus 145 IanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~-~~~~~~~~y~~~~h~h--~~Ei~~~l~~ 221 (343)
T PRK00436 145 IANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFS-EVNENLRPYKVGGHRH--TPEIEQELSA 221 (343)
T ss_pred EECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccch-hhcCCeeecccCCCCC--HHHHHHHHHH
Confidence 9999999999999999999999898 8999999999998863 3333211 1222234677777652 3334443332
Q ss_pred cCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccc--ceeeecCCCCccceEeeCCCCe
Q psy6885 190 LNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTED--EVVSSDFIGDTHSSIFDAQAGI 267 (301)
Q Consensus 190 l~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~--~~VS~D~~~~~~s~i~d~~~~~ 267 (301)
+.++++.+|+|||+++||++.++++++++++.+|++++|+++-++ -++|--..++ |-. .+..|..+-.| + .
T Consensus 222 ~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~-~~~v~v~~~~~~p~~-~~v~g~~~~~i---g--~ 294 (343)
T PRK00436 222 LAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYAD-EPFVRVLPEGQYPET-KSVRGSNFCDI---G--F 294 (343)
T ss_pred hcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCC-CCcEEEeCCCCCcch-hhhCCCCeEEE---E--E
Confidence 212799999999999999999999999999999999999964322 1223212221 211 12334332222 1 1
Q ss_pred ee--eCCeEEEEEEecCCc-hhhhhHHHHHHHH
Q psy6885 268 PL--NGKFVKLISWYDNEY-GYSNRVVDLIKYI 297 (301)
Q Consensus 268 ~~--~~~~~kl~~WyDNE~-gy~~r~~d~~~~~ 297 (301)
.. .++.+.+++=-||=- |=|-.-+-.+..|
T Consensus 295 ~~d~~~~~~~~~~~~DNL~kGAA~~Avq~~nl~ 327 (343)
T PRK00436 295 AVDERTGRLVVVSAIDNLVKGAAGQAVQNMNIM 327 (343)
T ss_pred EEcCCCCEEEEEEEecccchhHHHHHHHHHHHH
Confidence 11 245677777788843 4444444444443
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.84 E-value=3.2e-20 Score=178.58 Aligned_cols=230 Identities=14% Similarity=0.121 Sum_probs=156.5
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC----C--------------------CCCeEEecCCcCCCCCCccE
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS----A--------------------DAPMFVCGVNLDAYDPSFKV 112 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps----~--------------------d~plvV~gVN~~~~~~~~~I 112 (301)
++|+||.|++...+++.+++.+++|+ +||+.++ + ++|+.+||+|.+.+.. .+|
T Consensus 68 ~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~-~~i 144 (346)
T TIGR01850 68 DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKG-ARL 144 (346)
T ss_pred CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCC-CcE
Confidence 79999999999999999999999987 7787764 1 4889999999988864 679
Q ss_pred EecCCcchhhccchhhhhhhccCee--EEEEeeeecccccccc-ccCCCCCCcccccccccccccCCCc--hhhhhhhhc
Q psy6885 113 ISNASCTTNCLAPLAKVIHDNFEIV--EGLMTTVHATTATQKT-VDGPSGKLWRDGRGAAQNIIPAATG--AAKAVGKVI 187 (301)
Q Consensus 113 Vsn~sCtT~~Lap~lk~L~~~fgI~--~~~~TT~ha~s~~q~~-lD~~~~~d~r~~r~~a~NIIP~~tG--~ak~~~kvl 187 (301)
|+||+|+++++..+|+||++++.|+ ++.++|++++||+++- .+..+. ..+...-.+.|+.|+..- -.++++|++
T Consensus 145 ianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~-~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~ 223 (346)
T TIGR01850 145 IANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHF-PEVNENLRPYKVTGHRHTPEIEQELGRLA 223 (346)
T ss_pred EEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccc-hhhcCCeeeeccCCcCcHHHHHHHHHHhc
Confidence 9999999999999999999998887 7999999999999863 333221 111111123344444310 113334443
Q ss_pred cccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC-CCCccccccccceeeecCCCCccceEeeCCCC
Q psy6885 188 PALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG-PLAGILGYTEDEVVSSDFIGDTHSSIFDAQAG 266 (301)
Q Consensus 188 pel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~-~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~ 266 (301)
. -+.+++.+|+|||+++||+..++++++++++.++++++++++-++ ++--++.-.+-|-. .+..|..+-.| +
T Consensus 224 ~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~~~~p~~-~~v~g~n~~~i---g-- 296 (346)
T TIGR01850 224 G-GKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPST-KAVIGSNFCDI---G-- 296 (346)
T ss_pred C-CCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcCh-HHhcCCCeEEE---E--
Confidence 2 134699999999999999999999999999999999999975432 32222211101211 13334333222 2
Q ss_pred eeee--CCeEEEEEEecCCc-hhhhhHHHHHHHH
Q psy6885 267 IPLN--GKFVKLISWYDNEY-GYSNRVVDLIKYI 297 (301)
Q Consensus 267 ~~~~--~~~~kl~~WyDNE~-gy~~r~~d~~~~~ 297 (301)
...+ ++.+.+++=-||=. |=|-+-|-.++.|
T Consensus 297 ~~~d~~~~~l~~~~~~DNL~KGAAg~AVq~~n~~ 330 (346)
T TIGR01850 297 FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLM 330 (346)
T ss_pred EEEcCCCCEEEEEEEeechhhhHHHHHHHHHHHH
Confidence 2221 34566666688853 4555555555554
No 37
>KOG4777|consensus
Probab=99.84 E-value=3.5e-21 Score=175.75 Aligned_cols=192 Identities=18% Similarity=0.192 Sum_probs=150.5
Q ss_pred EecCCceEECC------------EEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC---
Q psy6885 27 FSCKWPPVVNG------------NKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS--- 91 (301)
Q Consensus 27 ~a~~~~l~i~g------------k~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps--- 91 (301)
+|.|++..+.| ..+.| .+-+++.| + ++||||+..+...+.|.-+...++|- +|+|+++
T Consensus 40 RSAGK~ya~a~~wkqt~~lp~~~~e~~V-~ec~~~~F--~--ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyR 112 (361)
T KOG4777|consen 40 RSAGKRYAFAGNWKQTDLLPESAHEYTV-EECTADSF--N--ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYR 112 (361)
T ss_pred cccCCceEecccchhcccccchhhhhhH-hhcChhhc--c--cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcc
Confidence 46678888887 34555 22344444 3 89999999999999988888888887 9999986
Q ss_pred --CCCCeEEecCCcCCCCC-C----------ccEEecCCcchhhccchhhhhhhcc-CeeEEEEeeeeccccccccccCC
Q psy6885 92 --ADAPMFVCGVNLDAYDP-S----------FKVISNASCTTNCLAPLAKVIHDNF-EIVEGLMTTVHATTATQKTVDGP 157 (301)
Q Consensus 92 --~d~plvV~gVN~~~~~~-~----------~~IVsn~sCtT~~Lap~lk~L~~~f-gI~~~~~TT~ha~s~~q~~lD~~ 157 (301)
+++|||||+||+++++. . .-||+|+||+|..+...|||||++| .|++..++||||+||++-..
T Consensus 113 re~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~ap--- 189 (361)
T KOG4777|consen 113 REDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAP--- 189 (361)
T ss_pred cCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCC---
Confidence 46999999999999875 1 2499999999999999999999999 78999999999999986321
Q ss_pred CCCCcccccccccccccCCCchh----hhhhhhcccc-----------CCceeEEEEeeeeeeeeEeEEEEEecCC--CC
Q psy6885 158 SGKLWRDGRGAAQNIIPAATGAA----KAVGKVIPAL-----------NGKLTGMAFRVPVANVSVVDLTVRLGKD--AT 220 (301)
Q Consensus 158 ~~~d~r~~r~~a~NIIP~~tG~a----k~~~kvlpel-----------~gkv~~~~vRVPv~~gs~~dl~~~~~k~--~~ 220 (301)
+. ..-.+..||+|...|.. .+..|+|-.+ ..++++.|-|||+.+||...+...|..+ .+
T Consensus 190 -gv---~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa 265 (361)
T KOG4777|consen 190 -GV---ELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPA 265 (361)
T ss_pred -Cc---hHHHHHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCc
Confidence 11 13347889999997764 2344555222 1357899999999999999999999854 45
Q ss_pred HHHHHHHHHHhh
Q psy6885 221 YDEIKAKVKAAA 232 (301)
Q Consensus 221 ~eei~~~l~~a~ 232 (301)
.+++++++.+..
T Consensus 266 ~~qv~~~l~eyv 277 (361)
T KOG4777|consen 266 HAQVVNLLFEYV 277 (361)
T ss_pred HHHHHHHHHhcc
Confidence 799999988765
No 38
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.81 E-value=3.8e-19 Score=173.17 Aligned_cols=231 Identities=12% Similarity=0.045 Sum_probs=158.0
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CC--------CCeEEecCCcCC-CC---------CCccEE
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----AD--------APMFVCGVNLDA-YD---------PSFKVI 113 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d--------~plvV~gVN~~~-~~---------~~~~IV 113 (301)
++|+||.|+|.-.+++.++. +++|+ +||+.++ ++ +|+++|++|.+. |. ...+||
T Consensus 104 ~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iI 180 (381)
T PLN02968 104 DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKSARLV 180 (381)
T ss_pred CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhcCCCEE
Confidence 79999999999999999987 57776 7787775 24 789999999875 43 135799
Q ss_pred ecCCcchhhccchhhhhhhccCe--eEEEEeeeecccccccc-ccCCCCCC-cccccccccccccCCCchhhhhhhhccc
Q psy6885 114 SNASCTTNCLAPLAKVIHDNFEI--VEGLMTTVHATTATQKT-VDGPSGKL-WRDGRGAAQNIIPAATGAAKAVGKVIPA 189 (301)
Q Consensus 114 sn~sCtT~~Lap~lk~L~~~fgI--~~~~~TT~ha~s~~q~~-lD~~~~~d-~r~~r~~a~NIIP~~tG~ak~~~kvlpe 189 (301)
+||+|++++++..|+||+++++| +++.++|++++||+++- .+..+... ...-|+.++|..|+..--.+.+.+++.
T Consensus 181 AnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pEie~~~~~~~~- 259 (381)
T PLN02968 181 ANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIEQGLADAAG- 259 (381)
T ss_pred ECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcchHHHHHHHHhC-
Confidence 99999999999999999999999 78999999999998764 33211111 011367788888887332233344431
Q ss_pred cCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHh-hcCCCCccccccccceeeecCCCCccceEeeCCCCee
Q psy6885 190 LNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAA-AEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIP 268 (301)
Q Consensus 190 l~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a-~~~~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~~ 268 (301)
.+.+++.||+|||+++||+..++++++++++.++++++++++ +..++-.++.-.+-|-. .+..|..+..| + ..
T Consensus 260 ~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~~~~~~P~~-~~v~gtn~~~i---g--~~ 333 (381)
T PLN02968 260 SKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVLERGAVPHT-DHVRGSNYCEL---N--VF 333 (381)
T ss_pred CCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeCCCCCCCCh-HHHCCCCcEEE---E--EE
Confidence 234699999999999999999999999999999999999995 33344433321101211 12334332221 1 11
Q ss_pred e--eCCeEEEEEEecCCc-hhhhhHHHHHHHH
Q psy6885 269 L--NGKFVKLISWYDNEY-GYSNRVVDLIKYI 297 (301)
Q Consensus 269 ~--~~~~~kl~~WyDNE~-gy~~r~~d~~~~~ 297 (301)
. ..+.+.+++=-||=. |=|-+-|-.|+.|
T Consensus 334 ~~~~~~~l~~~~~~DNL~KGAAgqAVQ~~nl~ 365 (381)
T PLN02968 334 ADRIPGRAIIISVIDNLVKGASGQAVQNLNLM 365 (381)
T ss_pred EeCCCCEEEEEEEeccHHHHHHHHHHHHHHHH
Confidence 1 234566666688843 4444444444444
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.67 E-value=2e-16 Score=150.37 Aligned_cols=229 Identities=12% Similarity=0.049 Sum_probs=151.3
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecCCcCCCCC--CccEEecCCcchhhccchhhh
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDAYDP--SFKVISNASCTTNCLAPLAKV 129 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~ 129 (301)
++|+||+|++.-.+++++++..++|+ +|||.++ +++|+.+||+|++..+. ..++|+||+|.+++++..|+|
T Consensus 50 ~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC~~Ta~~laL~P 127 (313)
T PRK11863 50 AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGCYPTGAIALLRP 127 (313)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCcHHHHHHHHHHH
Confidence 69999999999999999999889998 7888775 36999999999765443 467999999999999999999
Q ss_pred hhhccCeeEEEEeeeeccc---ccccc-ccCCCCCCccc-ccccccccccCCCc-hh---hhhhhhccccCCceeEEEEe
Q psy6885 130 IHDNFEIVEGLMTTVHATT---ATQKT-VDGPSGKLWRD-GRGAAQNIIPAATG-AA---KAVGKVIPALNGKLTGMAFR 200 (301)
Q Consensus 130 L~~~fgI~~~~~TT~ha~s---~~q~~-lD~~~~~d~r~-~r~~a~NIIP~~tG-~a---k~~~kvlpel~gkv~~~~vR 200 (301)
|+++..|++...++++++| |+++- .+.. .- --.+..|++|+.-+ .. .|+.+.|..+ -++.-+..-
T Consensus 128 L~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~-----~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~-~~~~F~Phl 201 (313)
T PRK11863 128 LVDAGLLPADYPVSINAVSGYSGGGKAMIAAY-----EAAPDGKAPAFRLYGLGLAHKHLPEMQAHAGLA-RRPIFTPSV 201 (313)
T ss_pred HHHcCCcccCceEEEEEccccccCCccchHHH-----hhhhhhhccCeeeccCCcCCcchHHHHHHhccc-cCcEEEeeE
Confidence 9997666666578899996 44432 1111 10 01257799999866 43 3444444322 123334445
Q ss_pred eeeeeeeEeEEEEEe---cCCCCHHHHHHHHHHhhcC-CCCccccccc-cc--eeeecC-CCCccceEeeCCCCeeeeCC
Q psy6885 201 VPVANVSVVDLTVRL---GKDATYDEIKAKVKAAAEG-PLAGILGYTE-DE--VVSSDF-IGDTHSSIFDAQAGIPLNGK 272 (301)
Q Consensus 201 VPv~~gs~~dl~~~~---~k~~~~eei~~~l~~a~~~-~lkgil~~~e-~~--~VS~D~-~~~~~s~i~d~~~~~~~~~~ 272 (301)
+|+.+|++..+++++ +++++.+|++++++++-++ |+--++...+ .| .-+... .|..+-.| .....-.++
T Consensus 202 ~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i---~v~~~~~~~ 278 (313)
T PRK11863 202 GNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLEL---FVFGNEDHG 278 (313)
T ss_pred ccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEE---EEEEcCCCC
Confidence 899999999999997 8889999999999986543 4444443222 11 111111 13222222 111111245
Q ss_pred eEEEEEEecCCc-hhhhhHHHHHHH
Q psy6885 273 FVKLISWYDNEY-GYSNRVVDLIKY 296 (301)
Q Consensus 273 ~~kl~~WyDNE~-gy~~r~~d~~~~ 296 (301)
.+++++=.||=. |=|-+-+--|+.
T Consensus 279 ~~~v~s~iDNL~KGAAGqAvQn~Nl 303 (313)
T PRK11863 279 QAVLVARLDNLGKGASGAAVQNLNL 303 (313)
T ss_pred EEEEEEEcccccccHHHHHHHHHHH
Confidence 688888899853 433333333333
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.57 E-value=1.1e-14 Score=137.91 Aligned_cols=179 Identities=13% Similarity=0.036 Sum_probs=133.3
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecCCcCCCCC--CccEEecCCcchhhccchhhh
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDAYDP--SFKVISNASCTTNCLAPLAKV 129 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~ 129 (301)
++|+||+|++...++++++...++|+ +||+.++ +++|..+||+|++..+. ..++||||+|.+++++.+|+|
T Consensus 49 ~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL~P 126 (310)
T TIGR01851 49 AADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALMRP 126 (310)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHHHH
Confidence 68999999999999999998888888 7887775 36999999998775443 468999999999999999999
Q ss_pred hhhccCeeEEEEeeeecccc---cccc-ccCCCCCCcccccccccccccCCCc-hhh---hhhhhccccCCceeEEEEee
Q psy6885 130 IHDNFEIVEGLMTTVHATTA---TQKT-VDGPSGKLWRDGRGAAQNIIPAATG-AAK---AVGKVIPALNGKLTGMAFRV 201 (301)
Q Consensus 130 L~~~fgI~~~~~TT~ha~s~---~q~~-lD~~~~~d~r~~r~~a~NIIP~~tG-~ak---~~~kvlpel~gkv~~~~vRV 201 (301)
|+++..|++...++++|+|| +++- .+..+ +..++. ....|+-|+.-+ .-+ |+.+.+... .++.-+..-+
T Consensus 127 L~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~-~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~~v~FtPhl~ 203 (310)
T TIGR01851 127 LVEAGILPADFPITINAVSGYSGGGKAMIADYE-QGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-LPPIFTPAVG 203 (310)
T ss_pred HHHcCCccccceEEEEeccccCccChhhhHHhh-hcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-CCEEEEeEEc
Confidence 99987777776899999987 4432 22211 111111 235677787654 333 333333221 3577788889
Q ss_pred eeeeeeEeEEEEEe---cCCCCHHHHHHHHHHhhcC-CCCccc
Q psy6885 202 PVANVSVVDLTVRL---GKDATYDEIKAKVKAAAEG-PLAGIL 240 (301)
Q Consensus 202 Pv~~gs~~dl~~~~---~k~~~~eei~~~l~~a~~~-~lkgil 240 (301)
|...|-+..+++++ ++.++.+++.++++++=++ |+--++
T Consensus 204 p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~ 246 (310)
T TIGR01851 204 NFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVA 246 (310)
T ss_pred cccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEe
Confidence 99999999999999 8889999999999986443 444444
No 41
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.25 E-value=1.3e-11 Score=108.87 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=79.9
Q ss_pred hhhhhhc-cCeeEEEEeeeecccccccc------------ccCCCCCCcccccccccccccCCCc-------hhhhhh--
Q psy6885 127 AKVIHDN-FEIVEGLMTTVHATTATQKT------------VDGPSGKLWRDGRGAAQNIIPAATG-------AAKAVG-- 184 (301)
Q Consensus 127 lk~L~~~-fgI~~~~~TT~ha~s~~q~~------------lD~~~~~d~r~~r~~a~NIIP~~tG-------~ak~~~-- 184 (301)
|+||+++ ++++++.++|+|++||+++- +.+...+.....+++++|++|+..+ +.+++.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 99999999999999998762 3232223345577899999999865 223332
Q ss_pred -----hhccccCCceeEEEEeeeeeeeeEeEEEEEec-CCCCHHHHHHHHHHh
Q psy6885 185 -----KVIPALNGKLTGMAFRVPVANVSVVDLTVRLG-KDATYDEIKAKVKAA 231 (301)
Q Consensus 185 -----kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~-k~~~~eei~~~l~~a 231 (301)
+++..- .+++.+|+|||+++||+..++++++ ++.+.+++.+++.+.
T Consensus 81 ~~~~~~~l~~~-~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGFP-PRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTET-TEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred hccccceeecc-ccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 333322 2899999999999999999999995 888888888888765
No 42
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.13 E-value=3.2e-11 Score=114.16 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=78.3
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-CCCCeEEecCCcCCCCC--CccEEecCCcchhhccchhhhhhhc
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-ADAPMFVCGVNLDAYDP--SFKVISNASCTTNCLAPLAKVIHDN 133 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-~d~plvV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~ 133 (301)
++|+||+|||....++.+++++++|+ .||+..+ ...|++||+||.+.+.. ..++|+||+|+|++++.+|+++++.
T Consensus 70 dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~Al~~v~~~ 147 (302)
T PRK08300 70 DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVSRVAPV 147 (302)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHHHhcccCcC
Confidence 69999999999999999999999998 6776554 47999999999888754 4589999999999999999998765
Q ss_pred cCeeEEEEeeeeccc
Q psy6885 134 FEIVEGLMTTVHATT 148 (301)
Q Consensus 134 fgI~~~~~TT~ha~s 148 (301)
++.++. +||+|.|
T Consensus 148 -~~~eIv-at~~s~s 160 (302)
T PRK08300 148 -HYAEIV-ASIASKS 160 (302)
T ss_pred -ceeeee-eeehhhc
Confidence 899987 9999998
No 43
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.60 E-value=4.7e-08 Score=92.16 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=77.3
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCCCCCeEEecCCcCCCCC--CccEEecCCcchhhccchhhhhhhcc
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDP--SFKVISNASCTTNCLAPLAKVIHDNF 134 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~d~plvV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~~~f 134 (301)
++|+|++||+.....+.+.+++++|+ .||.-.|....|++||+||.+.... +.++|++++|+|+.++..++.+++..
T Consensus 64 dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~~al~r~~d~~ 142 (285)
T TIGR03215 64 DIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAISRVAPVH 142 (285)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHHHHHHHhhccc
Confidence 69999999999999999999999997 3434445567999999999887654 46899999999999999999999987
Q ss_pred CeeEEEEeeeecccc
Q psy6885 135 EIVEGLMTTVHATTA 149 (301)
Q Consensus 135 gI~~~~~TT~ha~s~ 149 (301)
.+ ..++||++.|+
T Consensus 143 ~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 143 YA--EIVASIASRSA 155 (285)
T ss_pred cE--EEEEEEEeecc
Confidence 55 66788999996
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.48 E-value=2.5e-06 Score=81.94 Aligned_cols=228 Identities=12% Similarity=0.113 Sum_probs=141.6
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC---C--------------C----CeE---EecCCcCCCCCCcc
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA---D--------------A----PMF---VCGVNLDAYDPSFK 111 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~---d--------------~----plv---V~gVN~~~~~~~~~ 111 (301)
.++|+||.|+---.+++.++..++.|++ ||+.+.+ + . .-- .||.|.+++. .-+
T Consensus 69 ~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~-~A~ 145 (349)
T COG0002 69 DECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIR-GAK 145 (349)
T ss_pred ccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHh-cCC
Confidence 3689999999999999999999999995 6665531 0 0 122 3456665555 357
Q ss_pred EEecCCcchhhccchhhhhhhcc--CeeE-EEEeeeeccccccccccCCCCCCcccccccccccccCCCchh---hhhhh
Q psy6885 112 VISNASCTTNCLAPLAKVIHDNF--EIVE-GLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA---KAVGK 185 (301)
Q Consensus 112 IVsn~sCtT~~Lap~lk~L~~~f--gI~~-~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~a---k~~~k 185 (301)
.|+||.|-.++...+|+||-+.- .++. ..+-..-.+||.++-.-... .+ -....|+.|+.-... -|+.+
T Consensus 146 lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~----~~-~e~~~~~~~Y~~~~HrH~pEi~q 220 (349)
T COG0002 146 LIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKN----HF-PEVNDSLRPYGLTGHRHTPEIEQ 220 (349)
T ss_pred EeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccc----cc-hhhccccccccccccCchHHHHH
Confidence 99999999999999999998862 2344 24444555555554221110 11 123458888863223 33333
Q ss_pred hccccC---CceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC-CCCccccccccceeeecCCCCccceEe
Q psy6885 186 VIPALN---GKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG-PLAGILGYTEDEVVSSDFIGDTHSSIF 261 (301)
Q Consensus 186 vlpel~---gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~-~lkgil~~~e~~~VS~D~~~~~~s~i~ 261 (301)
-+..+. ..+.-|..-+|...|-+..+++.+++.++.+|+.+++++.=++ ++--|.....-|.+ -+.+|..+--|
T Consensus 221 ~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~-k~V~GsN~cdI- 298 (349)
T COG0002 221 HLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDT-KAVAGSNFCDI- 298 (349)
T ss_pred HhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCCh-hhhcCCcceEE-
Confidence 333333 3466777889999999999999999999999999999986554 44444332111211 12355443322
Q ss_pred eCCCCeeeeC--CeEEEEEEecCCc-hhhhhHHHHHHHH
Q psy6885 262 DAQAGIPLNG--KFVKLISWYDNEY-GYSNRVVDLIKYI 297 (301)
Q Consensus 262 d~~~~~~~~~--~~~kl~~WyDNE~-gy~~r~~d~~~~~ 297 (301)
. ...++ +.+-+++=.||=- |=|-+-|-=|+.|
T Consensus 299 --g--f~~d~~~~rvvvvsaIDNL~KGAAGQAVQnmNim 333 (349)
T COG0002 299 --G--FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNIM 333 (349)
T ss_pred --E--EEEcCCCCEEEEEEEeccccccHHHHHHHHHHHH
Confidence 2 22332 5677888888843 4444444333333
No 45
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.39 E-value=3.3e-05 Score=63.35 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=41.7
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecCCcCCCC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDAYD 107 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gVN~~~~~ 107 (301)
++|+||.|++...+++.+++.+++|+ +||+.++ ++.|+++||||.+++.
T Consensus 66 ~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 66 DVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp TESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred cCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 89999999999999999999999999 7888776 3699999999987653
No 46
>KOG4354|consensus
Probab=96.27 E-value=0.012 Score=54.54 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=104.8
Q ss_pred CCCCeEEecCCCC--CCC--eEE---ecCCc-CCCCCCccEEecCCcchhh----ccchhhhhhhccCeeEEEEeeeecc
Q psy6885 80 GGAKKVIISAPSA--DAP--MFV---CGVNL-DAYDPSFKVISNASCTTNC----LAPLAKVIHDNFEIVEGLMTTVHAT 147 (301)
Q Consensus 80 aGak~ViIsaps~--d~p--lvV---~gVN~-~~~~~~~~IVsn~sCtT~~----Lap~lk~L~~~fgI~~~~~TT~ha~ 147 (301)
+--|.++|+-+.+ -.| -.+ ||+|+ +++. .-+.|+||.|-.+. |.|+||.+.-+ .+ +-.+--|
T Consensus 109 ~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPGCYaTgsQl~l~Pllk~i~g~---p~--ifgvSGy 182 (340)
T KOG4354|consen 109 SDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPGCYATGSQLPLVPLLKAILGK---PE--IFGVSGY 182 (340)
T ss_pred cCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCCcccccCcccchHHHHHhcCC---cc--eeeeccc
Confidence 3345577754432 134 344 45663 3343 35789999996654 45666655432 22 1222345
Q ss_pred ccccccccCCCCCCcccccccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHH
Q psy6885 148 TATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAK 227 (301)
Q Consensus 148 s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~ 227 (301)
||++. +|+ ..-...-++.|+||..-.....++.|--.++-.+.-|---.|-+.|-...+++..++.++.||++++
T Consensus 183 SGAGt---kps--pkNd~~~l~nnlipY~ltdHiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~l 257 (340)
T KOG4354|consen 183 SGAGT---KPS--PKNDYSELANNLIPYGLTDHIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQL 257 (340)
T ss_pred cCCCC---CCC--CccCHHHHhcCCccccccccchhHhHHHhhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHH
Confidence 55542 232 2223456899999986322222222221222223333333455667677788889999999999999
Q ss_pred HHHhhcC-CCCccccccccceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCc-hhhhhHH
Q psy6885 228 VKAAAEG-PLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEY-GYSNRVV 291 (301)
Q Consensus 228 l~~a~~~-~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~-gy~~r~~ 291 (301)
++..-|+ +|-.++ .|=|+| -|..|..|-.+ +......-++.+-+++=-||-. |=|.+-+
T Consensus 258 yk~~YedE~lvhV~--ddvPlv-kdv~gsh~v~~--ggF~~~~~g~Ravii~tIDNLlKGAatQaL 318 (340)
T KOG4354|consen 258 YKTSYEDEELVHVL--DDVPLV-KDVRGSHYVHM--GGFPDRIPGDRAVIISTIDNLLKGAATQAL 318 (340)
T ss_pred HHhhccCcceeeee--ccccce-eccCCcceeEe--ccccCCCCCceEEEEEehhhhhhhHHHHHH
Confidence 9986654 344443 334654 45555444322 1222222344566777777743 4444433
No 47
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.86 E-value=0.0047 Score=50.21 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=39.7
Q ss_pred CCcccccccEEEEecCCcCCHHHHH---HHHHCCCCeEEecCCC-----CCCCeEEecCCcCCCC
Q psy6885 51 IPWAKSGAEYVVESTGVFTTIEKAS---AHLAGGAKKVIISAPS-----ADAPMFVCGVNLDAYD 107 (301)
Q Consensus 51 ~~w~~~gvdiv~e~tG~f~s~e~a~---~hl~aGak~ViIsaps-----~d~plvV~gVN~~~~~ 107 (301)
.+|...+.|+||.|++.....+.+. +.++.|+ ++|+.++ ++.|+.+|++|.+.++
T Consensus 59 ~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 59 EDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred CChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence 4455458999999999987777443 2334555 8887665 3689999999987653
No 48
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.38 E-value=2 Score=39.35 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=50.8
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCCCCCeEEecCCcCC-CCC-CccEEecCCcchhhccchhhhhhh
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDA-YDP-SFKVISNASCTTNCLAPLAKVIHD 132 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~d~plvV~gVN~~~-~~~-~~~IVsn~sCtT~~Lap~lk~L~~ 132 (301)
.+|+|||+|.....++.+.+..++|.+.+-++ |.+=-|-+||-||.+. ++. +-+.|++ -.++-.|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paaigp~vvp~~n~~eh~~a~nvnmvtc---ggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAAIGPYVVPVVNLEEHVDALNVNMVTC---GGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeecc-hhccCCeeccccchHHhcCCCCcceEee---cCcccchhhhhhhh
Confidence 67899999999999999999999999554443 4344689999999765 443 3456654 44555555554443
No 49
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=73.24 E-value=3.4 Score=33.06 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=24.4
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISA 89 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsa 89 (301)
..|+|+|||+.....++....+++|. =||++
T Consensus 59 ~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 59 DIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp T-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 68999999999888899999999997 44443
No 50
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=69.63 E-value=4.2 Score=38.29 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=29.8
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
..|+|+||+|...-++++++.|++|+.-+++|
T Consensus 62 ~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 62 RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 58999999999999999999999999878776
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=56.69 E-value=8.9 Score=35.60 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=51.4
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-CCCC-e---E--EecCCcCCCCCCccEEecCCcchhhccchhh
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-ADAP-M---F--VCGVNLDAYDPSFKVISNASCTTNCLAPLAK 128 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-~d~p-l---v--V~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk 128 (301)
..+|+++||++...-++++.+.|++|...+|+|-.. .| | + + +...++ .=|=-||-..-.|- +|+
T Consensus 59 ~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad-~~l~erl~~lak~~~-------~rv~~pSGAiGGlD-~l~ 129 (255)
T COG1712 59 AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALAD-EGLRERLRELAKCGG-------ARVYLPSGAIGGLD-ALA 129 (255)
T ss_pred hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccC-hHHHHHHHHHHhcCC-------cEEEecCccchhHH-HHH
Confidence 478999999999999999999999999878776442 11 1 0 0 111111 11222333333322 223
Q ss_pred hhhhccCeeEEEEeeeecccc
Q psy6885 129 VIHDNFEIVEGLMTTVHATTA 149 (301)
Q Consensus 129 ~L~~~fgI~~~~~TT~ha~s~ 149 (301)
.+. .-+|+++..||.-....
T Consensus 130 aar-~g~i~~V~lttrKpp~~ 149 (255)
T COG1712 130 AAR-VGGIEEVVLTTRKPPAE 149 (255)
T ss_pred Hhh-cCCeeEEEEEeecChHH
Confidence 322 24799999998877663
No 52
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.44 E-value=4.2 Score=40.71 Aligned_cols=68 Identities=18% Similarity=-0.017 Sum_probs=48.6
Q ss_pred cCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcc----cccccEEEEecCCc-----CCH---HHHHHHHHCCCCe
Q psy6885 17 EDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWA----KSGAEYVVESTGVF-----TTI---EKASAHLAGGAKK 84 (301)
Q Consensus 17 ~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~----~~gvdiv~e~tG~f-----~s~---e~a~~hl~aGak~ 84 (301)
++||-|.+. .-++..|.+.+.++.+ .+.+.+-|. ...+|+|+-|+-.- ..+ -.++.++++|||.
T Consensus 279 ATHg~f~s~-~p~~S~l~~~~~~~~~---~~~~~~~~~~~~~~~~vdLvVLSACqTa~g~gd~~a~lGLag~a~~aGa~s 354 (420)
T COG4995 279 ATHGQFSSG-NPEDSFLLLWDGPINV---TELDILLRNRNNNLLPVELVVLSACQTALGEGDGRAYLGLAGGAVYAGAKS 354 (420)
T ss_pred eccccccCC-CcccceeeecCCCCcc---cHHHHHHHhcccCCCCeeeEEEecchhccCCCCChhhhhHHHHHHHhchhh
Confidence 678999887 6677888888777666 445556676 56899999875322 222 3578899999998
Q ss_pred EEec
Q psy6885 85 VIIS 88 (301)
Q Consensus 85 ViIs 88 (301)
+|-|
T Consensus 355 ~laS 358 (420)
T COG4995 355 ALAS 358 (420)
T ss_pred hhhe
Confidence 8765
No 53
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=52.54 E-value=32 Score=26.38 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=25.7
Q ss_pred EEEEecCCCCHHHHHH-HHHHhhcCCCCcccccccc
Q psy6885 211 LTVRLGKDATYDEIKA-KVKAAAEGPLAGILGYTED 245 (301)
Q Consensus 211 l~~~~~k~~~~eei~~-~l~~a~~~~lkgil~~~e~ 245 (301)
+.++..+..|..+|++ +|++|.+-||-+.|.=.++
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~ 37 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSS 37 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCc
Confidence 4566778899999998 8889988898888764433
No 54
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=50.17 E-value=24 Score=26.48 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=37.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhcC--CCCccccccccc--eeeecCCCCccc
Q psy6885 210 DLTVRLGKDATYDEIKAKVKAAAEG--PLAGILGYTEDE--VVSSDFIGDTHS 258 (301)
Q Consensus 210 dl~~~~~k~~~~eei~~~l~~a~~~--~lkgil~~~e~~--~VS~D~~~~~~s 258 (301)
.++++...+.+.+++.+.|++-..+ .+||++..++++ .+..++.++.++
T Consensus 3 s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 3 SFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 5677788999999999999877644 589999887764 455666766544
No 55
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=45.16 E-value=24 Score=26.72 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=33.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhcC--CCCcccccccc-ceeeecCCCCccc
Q psy6885 210 DLTVRLGKDATYDEIKAKVKAAAEG--PLAGILGYTED-EVVSSDFIGDTHS 258 (301)
Q Consensus 210 dl~~~~~k~~~~eei~~~l~~a~~~--~lkgil~~~e~-~~VS~D~~~~~~s 258 (301)
.++++.+++++.+.+.+.+.+...+ ..||++.+.++ .....+..++.+.
T Consensus 3 s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 3 SVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 5788999999999999999995543 57999988876 3444555665444
No 56
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=45.08 E-value=21 Score=33.14 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=26.5
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEe
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVII 87 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViI 87 (301)
..+|+|+|||+.....+.+...+++|.- |++
T Consensus 60 ~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi 90 (265)
T PRK13303 60 QRPDLVVECAGHAALKEHVVPILKAGID-CAV 90 (265)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 3689999999999888999999999964 444
No 57
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=44.48 E-value=7.1 Score=31.11 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=26.9
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
.++|+||||+|.-...+.+-..++.|.+-+++..+.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 379999999996666677777777777666665554
No 58
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=38.89 E-value=36 Score=32.15 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=23.1
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
++|+||||+|.....+.+-..++.|.+-+++..+
T Consensus 238 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 238 EFDLIIEATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CCCEEEECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 6899999999755556666777776644444433
No 59
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=35.33 E-value=38 Score=30.99 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=26.9
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEe
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVII 87 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViI 87 (301)
++|+|++||+...-.+.+.+.+++|.--+++
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkhVl~~ 67 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKDLLIM 67 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 6999999999999999999999999644443
No 60
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.98 E-value=1.4e+02 Score=21.23 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=35.8
Q ss_pred ccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHH
Q psy6885 173 IPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKA 230 (301)
Q Consensus 173 IP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~ 230 (301)
||-..|+-+.+..++.+ +..++-...|-.-.....+.+.+++..+-..+++.+.|++
T Consensus 5 ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 5 FPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 56566766666667766 6677777777655444555666777655455555555554
No 61
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=34.02 E-value=42 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=24.0
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISA 89 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsa 89 (301)
++|+||||+|.-.+.+.+-..++.|.+-+++..
T Consensus 187 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 187 GVDVALEFSGATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCCEEEECCCChHHHHHHHHHhcCCCEEEEecc
Confidence 689999999976666667777777765455543
No 62
>PRK06349 homoserine dehydrogenase; Provisional
Probab=32.09 E-value=46 Score=33.17 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=25.7
Q ss_pred cccccEEEEecCCc-CCHHHHHHHHHCCCCeEEecCC
Q psy6885 55 KSGAEYVVESTGVF-TTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 55 ~~gvdiv~e~tG~f-~s~e~a~~hl~aGak~ViIsap 90 (301)
+..+|+|+||||.. ...++...++++|. -||..++
T Consensus 70 d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 70 DPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred CCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 34799999999864 45678889999984 4555455
No 63
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=29.35 E-value=51 Score=31.74 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=24.2
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
.|+|+||||+|...+.+.+-..++.|-+-+++.-+.
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 379999999996555566666666665445454443
No 64
>COG4115 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.37 E-value=1.9e+02 Score=22.65 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCCCCccccccccceeeecCCCCccceEeeCCCCe--eeeCCeEEEEEE
Q psy6885 221 YDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGI--PLNGKFVKLISW 279 (301)
Q Consensus 221 ~eei~~~l~~a~~~~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~--~~~~~~~kl~~W 279 (301)
+..|+++++.....|++|+-.+ ||+. .|+-| .+|-=++..... .++++.|++++-
T Consensus 24 ~kki~~Li~~i~rdPfkg~gkp--EpLk-~~~~g-~wSRRIn~eHRlVY~v~~~~v~il~~ 80 (84)
T COG4115 24 KKKINELIKEIKRDPFKGIGKP--EPLK-GDYSG-YWSRRINHEHRLVYTVDDDEVKILSA 80 (84)
T ss_pred HHHHHHHHHHhccCccccCCCC--ccCc-ccccc-hhhhhcccceeEEEEecCCEEEEEEE
Confidence 5678899999988899998643 6665 45554 567666655443 245667776643
No 65
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=26.31 E-value=69 Score=29.64 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.7
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEe
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVII 87 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViI 87 (301)
++|+|++|++...-.+.+...+++|...+++
T Consensus 61 ~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 61 DVDLVVECASVNAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCCEEEE
Confidence 6899999999988889999999998643333
No 66
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=52 Score=33.23 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=45.4
Q ss_pred cCCcCCH------HHHHHHHHCCCCeEEecCCCCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeE
Q psy6885 65 TGVFTTI------EKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVE 138 (301)
Q Consensus 65 tG~f~s~------e~a~~hl~aGak~ViIsaps~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~ 138 (301)
-|...|+ +.++..+++|+|-|++++- |-..|-.+.+= . ..-|+-+|+-|.+.-|+.+
T Consensus 167 RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gq-----------dv~aYG~D~~~----~--~~~l~~Ll~~l~~I~G~~r 229 (437)
T COG0621 167 RGKERSRPPEDILKEVKRLVAQGVKEIVLTGQ-----------DVNAYGKDLGG----G--KPNLADLLRELSKIPGIER 229 (437)
T ss_pred CCCccCCCHHHHHHHHHHHHHCCCeEEEEEEE-----------ehhhccccCCC----C--ccCHHHHHHHHhcCCCceE
Confidence 3555554 4577778899988877533 33333221100 0 3457788999999889999
Q ss_pred EEEeeeeccccc
Q psy6885 139 GLMTTVHATTAT 150 (301)
Q Consensus 139 ~~~TT~ha~s~~ 150 (301)
+-++++|+.--+
T Consensus 230 iR~~~~~P~~~~ 241 (437)
T COG0621 230 IRFGSSHPLEFT 241 (437)
T ss_pred EEEecCCchhcC
Confidence 999999995443
No 67
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.49 E-value=2.2e+02 Score=19.34 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=29.8
Q ss_pred cCCCchhhhhhhhccccCCceeEEEEeeee----eeeeEeEEEEEecCCCCHHHHHHHHH
Q psy6885 174 PAATGAAKAVGKVIPALNGKLTGMAFRVPV----ANVSVVDLTVRLGKDATYDEIKAKVK 229 (301)
Q Consensus 174 P~~tG~ak~~~kvlpel~gkv~~~~vRVPv----~~gs~~dl~~~~~k~~~~eei~~~l~ 229 (301)
|-..|.-..+..++-+.+..+.....+-+- ..-..+.++++.......+++.+.|+
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~ 65 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALR 65 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHH
Confidence 444566666777777777777766654331 23334555555533223334444444
No 68
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.40 E-value=1.1e+02 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=26.1
Q ss_pred cEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 59 EYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 59 div~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
++=+...|...+.|.+.+.+.+||.||||.
T Consensus 76 ~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig 105 (234)
T PRK13587 76 TKDIEVGGGIRTKSQIMDYFAAGINYCIVG 105 (234)
T ss_pred CCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 344677899999999999999999999994
No 69
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=22.39 E-value=87 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=22.3
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEe
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVII 87 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViI 87 (301)
.++|+||||+|.-...+.+-..++.|.+-+++
T Consensus 199 ~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 199 RDYRAIYDASGDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhhcCcEEEEE
Confidence 37999999999865556666677766543333
No 70
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=22.26 E-value=4.6e+02 Score=25.43 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.8
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
..+|+|+-||+.....+.+...+++|. -||.|
T Consensus 59 ~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 59 DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 369999999999999999999999996 34444
No 71
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=22.18 E-value=1.2e+02 Score=23.38 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=21.9
Q ss_pred EEEEecCCCCHHHHHH-HHHHhhcCCCCccc
Q psy6885 211 LTVRLGKDATYDEIKA-KVKAAAEGPLAGIL 240 (301)
Q Consensus 211 l~~~~~k~~~~eei~~-~l~~a~~~~lkgil 240 (301)
++++..+.+|+++|++ +|++|...||--+|
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~Pl~~~L 32 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKMPLGQLL 32 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhCCHHHHh
Confidence 4566778899999997 66777766755444
No 72
>PRK06270 homoserine dehydrogenase; Provisional
Probab=21.09 E-value=1.4e+02 Score=28.80 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=24.0
Q ss_pred ccccEEEEecCCcCC-----HHHHHHHHHCCCCeEEec
Q psy6885 56 SGAEYVVESTGVFTT-----IEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s-----~e~a~~hl~aGak~ViIs 88 (301)
..+|+|++||+.... .+.+..++++|. -||+
T Consensus 88 ~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVt 123 (341)
T PRK06270 88 VDADVVVEATPTNIETGEPALSHCRKALERGK--HVVT 123 (341)
T ss_pred cCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEc
Confidence 468999999986543 678888999986 4554
No 73
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=20.80 E-value=1.1e+02 Score=28.78 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=21.8
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEe
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVII 87 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViI 87 (301)
++|+||||+|.-.+.+.+-..++.|.+-|++
T Consensus 235 ~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 235 YFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4899999999755556667777777643333
Done!