Query psy6885
Match_columns 301
No_of_seqs 202 out of 1619
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:58:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h9e_O Glyceraldehyde-3-phosph 100.0 3E-112 1E-116 808.6 27.5 289 12-300 49-338 (346)
2 3pym_A GAPDH 3, glyceraldehyde 100.0 4E-112 1E-116 804.0 27.7 289 11-299 43-331 (332)
3 3v1y_O PP38, glyceraldehyde-3- 100.0 2E-111 6E-116 801.0 26.6 291 11-301 45-337 (337)
4 4dib_A GAPDH, glyceraldehyde 3 100.0 5E-111 2E-115 798.6 23.6 288 12-300 46-335 (345)
5 3doc_A Glyceraldehyde 3-phosph 100.0 1E-110 5E-115 794.3 25.3 288 12-300 46-334 (335)
6 3ids_C GAPDH, glyceraldehyde-3 100.0 1E-110 5E-115 799.1 21.3 290 11-300 48-353 (359)
7 3lvf_P GAPDH 1, glyceraldehyde 100.0 2E-108 7E-113 779.6 25.2 285 12-300 46-336 (338)
8 3hja_A GAPDH, glyceraldehyde-3 100.0 2E-108 6E-113 784.1 19.8 287 12-299 62-356 (356)
9 1obf_O Glyceraldehyde 3-phosph 100.0 4E-106 1E-110 766.4 26.2 288 11-300 45-334 (335)
10 2b4r_O Glyceraldehyde-3-phosph 100.0 7E-106 2E-110 766.0 24.2 288 12-299 54-344 (345)
11 2ep7_A GAPDH, glyceraldehyde-3 100.0 3E-105 1E-109 761.4 22.3 288 11-300 43-340 (342)
12 2g82_O GAPDH, glyceraldehyde-3 100.0 3.6E-99 1E-103 719.0 26.4 288 11-300 40-329 (331)
13 2d2i_A Glyceraldehyde 3-phosph 100.0 5.5E-97 2E-101 714.0 25.9 289 11-300 45-336 (380)
14 1rm4_O Glyceraldehyde 3-phosph 100.0 3.5E-96 1E-100 699.8 26.1 289 11-300 44-334 (337)
15 3cmc_O GAPDH, glyceraldehyde-3 100.0 1E-95 4E-100 696.3 25.3 289 11-300 42-332 (334)
16 3b1j_A Glyceraldehyde 3-phosph 100.0 2.2E-95 7E-100 695.3 26.9 289 11-300 45-336 (339)
17 1hdg_O Holo-D-glyceraldehyde-3 100.0 5.7E-95 2E-99 690.6 27.0 288 11-299 43-331 (332)
18 3cps_A Glyceraldehyde 3-phosph 100.0 1.3E-94 4.6E-99 692.6 24.7 290 11-300 59-352 (354)
19 3e5r_O PP38, glyceraldehyde-3- 100.0 8E-94 2.7E-98 684.1 27.2 291 11-301 45-337 (337)
20 1gad_O D-glyceraldehyde-3-phos 100.0 4.3E-94 1.5E-98 684.2 25.3 287 12-299 43-330 (330)
21 1u8f_O GAPDH, glyceraldehyde-3 100.0 3.4E-93 1.2E-97 679.3 26.0 290 12-301 46-335 (335)
22 2x5j_O E4PDH, D-erythrose-4-ph 100.0 2.1E-93 7E-98 681.8 23.3 289 11-300 46-336 (339)
23 2yyy_A Glyceraldehyde-3-phosph 100.0 7.1E-50 2.4E-54 381.9 7.3 198 12-234 43-253 (343)
24 2yv3_A Aspartate-semialdehyde 100.0 4.4E-45 1.5E-49 347.2 17.3 259 26-299 36-329 (331)
25 2r00_A Aspartate-semialdehyde 100.0 3.3E-42 1.1E-46 327.9 18.8 259 30-299 43-333 (336)
26 2hjs_A USG-1 protein homolog; 100.0 1.1E-42 3.7E-47 331.7 14.3 262 29-299 45-335 (340)
27 1t4b_A Aspartate-semialdehyde 100.0 4.3E-41 1.5E-45 323.9 4.0 207 11-232 33-299 (367)
28 1cf2_P Protein (glyceraldehyde 100.0 1.9E-40 6.6E-45 315.9 2.4 194 12-233 42-245 (337)
29 1b7g_O Protein (glyceraldehyde 100.0 4.1E-37 1.4E-41 293.3 7.0 163 57-233 77-245 (340)
30 2czc_A Glyceraldehyde-3-phosph 100.0 2.7E-36 9.3E-41 286.5 5.2 193 12-234 43-244 (334)
31 1xyg_A Putative N-acetyl-gamma 100.0 4.6E-36 1.6E-40 288.0 6.5 256 9-299 51-345 (359)
32 2ep5_A 350AA long hypothetical 100.0 4.1E-36 1.4E-40 287.2 5.4 200 13-233 44-270 (350)
33 3uw3_A Aspartate-semialdehyde 100.0 2E-35 6.8E-40 285.2 3.5 257 29-298 43-375 (377)
34 3pzr_A Aspartate-semialdehyde 100.0 3.6E-35 1.2E-39 282.7 3.6 258 29-299 39-368 (370)
35 3tz6_A Aspartate-semialdehyde 100.0 6.6E-34 2.3E-38 271.7 12.1 255 27-299 38-342 (344)
36 4dpk_A Malonyl-COA/succinyl-CO 100.0 4.3E-33 1.5E-37 267.4 17.1 232 57-299 79-353 (359)
37 4dpl_A Malonyl-COA/succinyl-CO 100.0 4.3E-33 1.5E-37 267.4 15.9 232 57-299 79-353 (359)
38 3pwk_A Aspartate-semialdehyde 100.0 8.4E-34 2.9E-38 272.9 10.7 258 27-299 39-343 (366)
39 1ys4_A Aspartate-semialdehyde 100.0 4E-34 1.4E-38 273.5 6.4 201 14-233 49-276 (354)
40 2ozp_A N-acetyl-gamma-glutamyl 100.0 1.6E-33 5.4E-38 268.9 5.0 252 10-299 40-331 (345)
41 3hsk_A Aspartate-semialdehyde 100.0 6.2E-31 2.1E-35 254.2 11.2 171 52-233 90-300 (381)
42 3dr3_A N-acetyl-gamma-glutamyl 100.0 2.6E-31 8.9E-36 253.1 6.9 223 57-299 75-329 (337)
43 2nqt_A N-acetyl-gamma-glutamyl 99.9 2.4E-28 8.1E-33 234.0 10.9 232 53-298 78-337 (352)
44 1vkn_A N-acetyl-gamma-glutamyl 99.9 4.2E-23 1.5E-27 197.4 11.1 223 57-299 78-337 (351)
45 1nvm_B Acetaldehyde dehydrogen 97.1 0.00018 6.1E-09 67.2 2.4 157 57-219 71-281 (312)
46 3ic5_A Putative saccharopine d 60.5 5.4 0.00018 29.5 2.7 33 57-89 69-101 (118)
47 1j5p_A Aspartate dehydrogenase 45.3 9.3 0.00032 34.3 2.1 40 46-88 52-91 (253)
48 3mtj_A Homoserine dehydrogenas 43.1 17 0.00057 35.2 3.7 35 55-90 76-111 (444)
49 1o9a_B FNBB, fibronectin bindi 42.4 3.4 0.00012 25.4 -0.8 22 264-285 12-33 (36)
50 2ejw_A HDH, homoserine dehydro 35.5 25 0.00086 32.5 3.5 30 57-87 66-96 (332)
51 2v1y_A Phosphatidylinositol-4, 32.9 64 0.0022 25.2 4.9 41 204-246 27-68 (108)
52 1f06_A MESO-diaminopimelate D- 29.7 38 0.0013 30.6 3.6 34 57-91 58-91 (320)
53 3cea_A MYO-inositol 2-dehydrog 28.7 47 0.0016 29.7 4.1 33 57-90 71-103 (346)
54 3c8m_A Homoserine dehydrogenas 27.3 39 0.0013 31.0 3.3 31 56-87 85-119 (331)
55 2dc1_A L-aspartate dehydrogena 25.6 38 0.0013 28.9 2.7 86 56-147 49-136 (236)
56 3gdo_A Uncharacterized oxidore 25.1 61 0.0021 29.5 4.2 34 56-90 64-97 (358)
57 3ff4_A Uncharacterized protein 24.9 37 0.0013 26.7 2.3 39 46-88 51-89 (122)
58 2rbg_A Putative uncharacterize 24.4 27 0.00092 27.8 1.3 26 221-246 72-97 (126)
59 3kux_A Putative oxidoreductase 24.1 69 0.0024 28.9 4.3 34 56-90 66-99 (352)
60 3keo_A Redox-sensing transcrip 23.8 1E+02 0.0035 26.6 5.1 47 55-101 146-195 (212)
61 4dxr_B Nesprin-1; beta-sandwic 23.4 25 0.00087 21.9 0.8 14 2-15 15-28 (35)
62 3euw_A MYO-inositol dehydrogen 22.7 67 0.0023 28.8 3.9 34 56-90 64-97 (344)
63 3i23_A Oxidoreductase, GFO/IDH 21.7 76 0.0026 28.7 4.1 34 56-90 64-97 (349)
64 1r0k_A 1-deoxy-D-xylulose 5-ph 21.3 79 0.0027 30.0 4.2 30 58-88 94-123 (388)
65 4hkt_A Inositol 2-dehydrogenas 21.1 80 0.0027 28.1 4.1 33 57-90 63-95 (331)
66 3c1a_A Putative oxidoreductase 20.7 83 0.0028 27.9 4.1 33 57-90 69-101 (315)
67 3m6i_A L-arabinitol 4-dehydrog 20.5 46 0.0016 30.1 2.3 28 56-83 251-278 (363)
68 3ing_A Homoserine dehydrogenas 20.4 1E+02 0.0035 28.2 4.7 35 55-90 80-118 (325)
69 3e9m_A Oxidoreductase, GFO/IDH 20.3 79 0.0027 28.3 3.9 34 56-90 66-99 (330)
70 3db2_A Putative NADPH-dependen 20.3 89 0.003 28.2 4.2 34 56-90 65-98 (354)
71 2jv8_A Uncharacterized protein 20.2 56 0.0019 22.8 2.1 30 24-55 11-41 (73)
72 3oqb_A Oxidoreductase; structu 20.0 1.1E+02 0.0037 27.8 4.8 34 56-90 82-115 (383)
No 1
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Probab=100.00 E-value=2.9e-112 Score=808.63 Aligned_cols=289 Identities=66% Similarity=1.031 Sum_probs=285.5
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
||||||+||+|+|||+++|++|.||||+|+|+++++|++|+|+++|+||||||||.|+++|+|++|+++||||||||+|+
T Consensus 49 l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps 128 (346)
T 3h9e_O 49 MFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPS 128 (346)
T ss_dssp HHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred cccccCCCCCCCCcEEEcCCEEEECCEEEEEEecCChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccccc
Q psy6885 92 ADAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQ 170 (301)
Q Consensus 92 ~d~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~ 170 (301)
+|+||||||||++.|++ +++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+|++++||++|++++
T Consensus 129 ~d~plvV~gVN~~~~~~~~~~IISNasCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~tQ~~~Dg~~~kd~r~~r~aa~ 208 (346)
T 3h9e_O 129 PDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQ 208 (346)
T ss_dssp SSSCBCCTTTTGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTSGGGGSBTTT
T ss_pred CCCCeeCcccCHHHcCcccCCEEECCcchhhhHHHHHHHHHHHhCeeEEEEeeeeeccCccccccCCCCCCcccccccee
Confidence 99999999999999997 78999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeee
Q psy6885 171 NIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSS 250 (301)
Q Consensus 171 NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~ 250 (301)
||||++||++|+++||+|+|+||++|+|+||||++||++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+
T Consensus 209 NiIP~~tGaakavgkViPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~ 288 (346)
T 3h9e_O 209 NIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVST 288 (346)
T ss_dssp CCEEECCHHHHHHHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGG
T ss_pred eeecccCchHHhhheechhhcCcEEEEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 251 DFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 251 D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+|++||||||+.+|++++++++||++||||||||||||+||+.||+++
T Consensus 289 Df~~~~~ssi~d~~~~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 338 (346)
T 3h9e_O 289 DFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSR 338 (346)
T ss_dssp GGTTCCCSEEEETTTCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeEcccccEEecCCEEEEEEEECCCcchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999875
No 2
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=100.00 E-value=3.9e-112 Score=803.95 Aligned_cols=289 Identities=63% Similarity=0.980 Sum_probs=285.2
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-||||||+||+|+|||+++|++|.||||+|+|+++++|+++||+++|+|||+||||.|+++|+|++|+++||||||||+|
T Consensus 43 ~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap 122 (332)
T 3pym_A 43 YMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAP 122 (332)
T ss_dssp HHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSC
T ss_pred HHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccccc
Q psy6885 91 SADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQ 170 (301)
Q Consensus 91 s~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~ 170 (301)
++|+||||||||+++|+++++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+|++++||++|++++
T Consensus 123 s~d~p~vV~gVN~~~~~~~~~IISnasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~Q~~vDg~~~kd~r~~r~aa~ 202 (332)
T 3pym_A 123 SSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASG 202 (332)
T ss_dssp CSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCTGGGSCGGG
T ss_pred CCCCCeEeeccchhhcCccccEEecCcchhhhhHHHHHHHHHhcCeEEEEEEEEeeccccchhccCCCcccCccccchhh
Confidence 99999999999999999888999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeee
Q psy6885 171 NIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSS 250 (301)
Q Consensus 171 NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~ 250 (301)
||||++||++|+++||||+|+||++|+|+||||++||++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+
T Consensus 203 NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~ 282 (332)
T 3pym_A 203 NIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSS 282 (332)
T ss_dssp CCEEEECSHHHHHHHHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGG
T ss_pred cccCCCCChHHHHHHhhhhhcCCEEEEEEEcCCCCcEeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 251 DFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 251 D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
||+|++||||||+.+|++++++++||++||||||||||||+||+.||++
T Consensus 283 Df~~~~~ssi~d~~~~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~ 331 (332)
T 3pym_A 283 DFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331 (332)
T ss_dssp GGTTCCCSEEEEGGGCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceEEccccccccCCCEEEEEEEECCccchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999975
No 3
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=100.00 E-value=1.7e-111 Score=801.02 Aligned_cols=291 Identities=64% Similarity=1.012 Sum_probs=286.6
Q ss_pred ccceeccCCCCCCc-eEEecCC-ceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 11 ARFSSDEDDLKSPS-TFFSCKW-PPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 11 ~~~~~d~~~g~~~~-~v~a~~~-~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
-||||||+||+|+| +|+++++ +|.||||+|+|+++++|+++||+++|+|||+||||.|+++|+|++|+++||||||||
T Consensus 45 ~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIs 124 (337)
T 3v1y_O 45 YMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVIS 124 (337)
T ss_dssp HHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECCSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEES
T ss_pred HHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEEC
Confidence 38999999999999 9999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 89 APSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 89 aps~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
+|++|+||||||||++.|+++++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+++.++||++|++
T Consensus 125 aps~d~p~vV~gVN~~~~~~~~~IISnasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~~~Dg~~~kd~r~~r~~ 204 (337)
T 3v1y_O 125 APSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAA 204 (337)
T ss_dssp SCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCTTCGGGGSBG
T ss_pred CCCCCCCeECCCCCHHHcCCCCcEEecCchhhhhHHHHHHHHHHhcCeEEEEEeeeeeccchhhhccCCccccccccccc
Confidence 99999999999999999998889999999999999999999999999999999999999999999999988999999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++|+++||||+|+||++|+|+||||++||++||+++++|++++|||+++|++|++|+|||||+|+|+|+|
T Consensus 205 a~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~V 284 (337)
T 3v1y_O 205 SFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLV 284 (337)
T ss_dssp GGCCEEEECCHHHHHHHHSGGGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSCCC
T ss_pred cceeecCCCChHHHHHHhccccCCcEEEEEEEcCCCCcEEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhcC
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~~ 301 (301)
|+||+|++||||||+.+|++++++++||++||||||||||||+||+.||++++
T Consensus 285 S~Df~~~~~ssi~d~~~~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~~ 337 (337)
T 3v1y_O 285 STDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337 (337)
T ss_dssp GGGGTTCCCSEEEETTTCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHCC
T ss_pred eeccCCCCcceEEecccCeEECCCEEEEEEEECCccchHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999875
No 4
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}
Probab=100.00 E-value=5.1e-111 Score=798.56 Aligned_cols=288 Identities=47% Similarity=0.741 Sum_probs=270.9
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
||||||+||+|+|+|+++|++|.||||+|+|+++++|+++||+++|+||||||||.|+++|+|++|+++||||||||+|+
T Consensus 46 llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps 125 (345)
T 4dib_A 46 LIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPG 125 (345)
T ss_dssp HHHEETTTEECSSCEEECSSEEEETTEEEEEECCSCGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred HhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccc
Q psy6885 92 A-DAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 169 (301)
Q Consensus 92 ~-d~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a 169 (301)
+ |+||||||||++.|++ .++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+|+ ++||++|+++
T Consensus 126 ~~d~p~vV~gVN~~~~~~~~~~IISNaSCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~r~aa 204 (345)
T 4dib_A 126 KNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACG 204 (345)
T ss_dssp BSCSEECCTTTTGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECC--------------CCTTSCTT
T ss_pred CCCCCEEEecCCHHHcCcccCeEEECCchhhhhhHHHHHHHHHhcCeEEEEEEeeeeccCCceeccccc-cccccchhhh
Confidence 7 5899999999999997 68999999999999999999999999999999999999999999999986 8999999999
Q ss_pred cccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceee
Q psy6885 170 QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVS 249 (301)
Q Consensus 170 ~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS 249 (301)
+||||++||++|+++||||+|+||++|+|+||||++||++||+++++|++++|||+++|++|++|+|||||+|+|+|+||
T Consensus 205 ~NIIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~~VS 284 (345)
T 4dib_A 205 QSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVS 284 (345)
T ss_dssp TCCEEECCTHHHHHHHHCGGGTTTEEEEEEECCCSSEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCG
T ss_pred hceecCCCchHHHHhhhccccCCcEEEEEEEccCcccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCcEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 250 SDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 250 ~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
+||+|++||||||+.+|++++++++||++||||||||||||+||+.||+++
T Consensus 285 ~Df~~~~~ssi~d~~~t~~~~~~~vk~~~WYDNE~Gys~r~~dl~~~~~~~ 335 (345)
T 4dib_A 285 IDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVDE 335 (345)
T ss_dssp GGGTTCCCSEEEEGGGCEEETTTEEEEEEEEETTHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCcchhhhhhccEEECCCEEEEEEEECCCcchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999864
No 5
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*
Probab=100.00 E-value=1.3e-110 Score=794.27 Aligned_cols=288 Identities=43% Similarity=0.686 Sum_probs=283.3
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
||||||+||+|+|+|+++|++|.||||+|+|+++++|+++||+++|+||||||||.|+++|+|++|+++||||||||+|+
T Consensus 46 l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps 125 (335)
T 3doc_A 46 LLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPA 125 (335)
T ss_dssp HHHEETTTEECSSCCEECSSEEESSSSEEEEECCSSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred HhcccCCCCCCCCeEEEecCEEEECCEEEEEEeecccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccccc
Q psy6885 92 AD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQ 170 (301)
Q Consensus 92 ~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~ 170 (301)
+| +||||||||++.|+++++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+|+ ++||++|++++
T Consensus 126 ~d~~p~vV~gVN~~~~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~g~mTTvha~T~~q~~~D~p~-kd~r~~r~aa~ 204 (335)
T 3doc_A 126 DGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTMH-KDLYRARAAAL 204 (335)
T ss_dssp TTCSEECCTTTTGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCTTS
T ss_pred CCCCCEEecccCHHHhCccCCeEecCchhhhhhHHhHHHHHHHcCEEEEEEEeeeeccchhhhhcCcc-ccccccccCcc
Confidence 87 79999999999999888999999999999999999999999999999999999999999999985 89999999999
Q ss_pred ccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeee
Q psy6885 171 NIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSS 250 (301)
Q Consensus 171 NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~ 250 (301)
||||++||++|+++||||+|+||++|+|+||||++||++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+
T Consensus 205 NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~ 284 (335)
T 3doc_A 205 SMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSH 284 (335)
T ss_dssp SCEEEECCHHHHHHHHSGGGTTCEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGG
T ss_pred eEecCCCchHHHHHHhccccCCCEEEEEEEeccccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 251 DFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 251 D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+|++||||||+.+|++++++++||++||||||||||||+||+.||++.
T Consensus 285 Df~~~~~ssi~d~~~t~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 334 (335)
T 3doc_A 285 DFNHDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALGKL 334 (335)
T ss_dssp GGTTCCCSEEEEGGGCEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred eeCCCCCccccCchhhEEEcCCEEEEEEEEcCccchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999863
No 6
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Probab=100.00 E-value=1.4e-110 Score=799.09 Aligned_cols=290 Identities=53% Similarity=0.852 Sum_probs=284.4
Q ss_pred ccceeccCCCCCCceEEe--------cCCceEECCEEEEEEe-cCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCC
Q psy6885 11 ARFSSDEDDLKSPSTFFS--------CKWPPVVNGNKIAVHS-ERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGG 81 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a--------~~~~l~i~gk~I~v~~-~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aG 81 (301)
-||||||+||+|+|+|++ +|++|.||||+|+|++ +++|+++||+++|+||||||||.|+++|+|++|+++|
T Consensus 48 ~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aG 127 (359)
T 3ids_C 48 YQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGG 127 (359)
T ss_dssp HHHHEETTTEECSSCEEEECSCTTSSSCCEEEETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTT
T ss_pred HHhcccCCCCCEeeEEEecccccccCCCCEEEECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcC
Confidence 379999999999999999 9999999999999998 9999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC-CCCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhh-hhccCeeEEEEeeeeccccccccccCCC
Q psy6885 82 AKKVIISAPSA-DAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVI-HDNFEIVEGLMTTVHATTATQKTVDGPS 158 (301)
Q Consensus 82 ak~ViIsaps~-d~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L-~~~fgI~~~~~TT~ha~s~~q~~lD~~~ 158 (301)
|||||||+|++ |+||||||||++.|++ +++||||||||||||+|++|+| ||+|||++++||||||+|++|+++|+|+
T Consensus 128 AkkViISaps~~d~p~vV~gVN~~~~~~~~~~IISNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~~vD~~~ 207 (359)
T 3ids_C 128 ARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVS 207 (359)
T ss_dssp CCEEEESSCCBSSCEECCTTTTGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCC
T ss_pred CCEEEECCCCCCCCCeEEeccCHHHcCCCCCCEEECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhhhhcCCc
Confidence 99999999997 7999999999999998 7899999999999999999999 9999999999999999999999999998
Q ss_pred CCCcccccccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCc
Q psy6885 159 GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAG 238 (301)
Q Consensus 159 ~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkg 238 (301)
.++||++|++++||||++||++|+++||||+|+||++|+||||||++||++||+++++|++++|||+++|++|++|+|||
T Consensus 208 ~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkg 287 (359)
T 3ids_C 208 VKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKG 287 (359)
T ss_dssp TTCTGGGSBGGGCCEEEECSHHHHHHHHSGGGTTSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTT
T ss_pred cccccccccCcceeEccCCchHHHHhhhchhhcCceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeecCCCCccceEeeCCCCeeee----CCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 239 ILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN----GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 239 il~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~----~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+|+|+|+||+||+|++||||||+.+|++++ ++++||++||||||||||||+||+.||+++
T Consensus 288 il~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~~~~~vk~~~WYDNE~Gys~r~vdl~~~~~~~ 353 (359)
T 3ids_C 288 ILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASK 353 (359)
T ss_dssp TEEEECSCCCGGGGTTCCSSEEEEHHHHHHSSCTTCSSEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred ceeEecCCEEeeecCCCCcceeEecccceeecccCCCCEEEEeEEECCCcchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998 899999999999999999999999999875
No 7
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=100.00 E-value=2e-108 Score=779.63 Aligned_cols=285 Identities=45% Similarity=0.662 Sum_probs=279.5
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
||||||+||+|+|+|+++|++|.||||+|+|+++++|+++||+++|+||||||||.|+++|+|++|+++||||||||+|+
T Consensus 46 l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps 125 (338)
T 3lvf_P 46 LLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPA 125 (338)
T ss_dssp HHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC
T ss_pred HhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEecccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCC-Ccccccccc
Q psy6885 92 A-DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGK-LWRDGRGAA 169 (301)
Q Consensus 92 ~-d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~-d~r~~r~~a 169 (301)
+ |+||||||||++.|+++++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+|+.+ +||++|+++
T Consensus 126 ~~d~p~vV~gVN~~~~~~~~~IISNasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~~~D~~~~k~d~r~~r~aa 205 (338)
T 3lvf_P 126 TGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAA 205 (338)
T ss_dssp BSSCEECCTTTTGGGCCSCCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCCTTTTSCGG
T ss_pred CCCCCEEeccCCHHHcCccCCeEecCchhhhhhHHHHHHHHHhcCEEEEEEeeeccccchhhhhcCCccccccccchhhh
Confidence 7 69999999999999988899999999999999999999999999999999999999999999999766 999999999
Q ss_pred cccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecC-CCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 170 QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 170 ~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k-~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
+||||++||++|+++||||+|+||++|+|+||||++||++||+++++| ++++|||+++|++|++|+ |+|+|+|+|
T Consensus 206 ~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~----l~yte~~~V 281 (338)
T 3lvf_P 206 ENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIV 281 (338)
T ss_dssp GCCEEEECSTTTTGGGTCGGGTTSEEEEEEEESCSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSS----EEEECSCCC
T ss_pred ceEEeCCCchHHHHhhhchhhcCcEEEEEEEcCCCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCC----cccccCCEE
Confidence 999999999999999999999999999999999999999999999999 999999999999999987 999999999
Q ss_pred eecCCCCccceEeeCCCCeeee---CCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLN---GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~---~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
|+||+|++||||||+.+|++++ ++++||++||||||||||||+||+.||+++
T Consensus 282 S~Df~~~~~ssi~d~~~t~~~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 336 (338)
T 3lvf_P 282 SSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAEL 336 (338)
T ss_dssp GGGGTTCCCSEEEEGGGCEEEEETTEEEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred eEeeCCCCcceEEecccceEecCCCCCEEEEEEEECCccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999 899999999999999999999999999875
No 8
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Probab=100.00 E-value=1.7e-108 Score=784.10 Aligned_cols=287 Identities=51% Similarity=0.766 Sum_probs=281.8
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCC----HHHHHHHHH-CCCCeEE
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTT----IEKASAHLA-GGAKKVI 86 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s----~e~a~~hl~-aGak~Vi 86 (301)
+|||||+||+|+|+|+++|++|.|||++|+|+++++|+++||++.|+|||+||||.|++ +|+|++|++ +||||||
T Consensus 62 llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVV 141 (356)
T 3hja_A 62 LLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVI 141 (356)
T ss_dssp HHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEE
T ss_pred hhccccCCCCCCCCEEEcCCEEEECCEEEEEEEcCChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999 999999999 9999999
Q ss_pred ecCCCCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccc
Q psy6885 87 ISAPSAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDG 165 (301)
Q Consensus 87 Isaps~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~ 165 (301)
||+|++| +||||||||++.|+++++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+|+ +|||++
T Consensus 142 Isaps~d~vp~vV~gVN~~~~~~~~~IISNaSCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~ 220 (356)
T 3hja_A 142 LTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPH-SDLRRA 220 (356)
T ss_dssp ESSCCSSCCEECCTTTSGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTT
T ss_pred ECCCCCCCCCEEeccCCHHHcCcCccEEECCccchhhhhHhHHHHHHhcCeEEEEEEEEEecccccccccCcc-cccccc
Confidence 9999986 69999999999999888999999999999999999999999999999999999999999999986 999999
Q ss_pred cccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEe-cCCCCHHHHHHHHHHhhcCC-CCcccccc
Q psy6885 166 RGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRL-GKDATYDEIKAKVKAAAEGP-LAGILGYT 243 (301)
Q Consensus 166 r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~-~k~~~~eei~~~l~~a~~~~-lkgil~~~ 243 (301)
|++++||||++||++|+++||||+|+||++|+|+||||++||++||++++ +|++++|||+++|++|++|+ |||||+|+
T Consensus 221 r~aa~NIIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yt 300 (356)
T 3hja_A 221 RAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYT 300 (356)
T ss_dssp SBTTTSCEEEECCTTTTHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEE
T ss_pred cccccEEEcCCCchHHHHHHhccccCCcEEEEEEEcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhcccccee
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999 99999999
Q ss_pred ccceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 244 EDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 244 e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
|+|+||+||+|++||||||+.+|++++++++||++||||||||||||+||+.||++
T Consensus 301 e~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vk~~~WYDNE~Gys~r~vdl~~~~~~ 356 (356)
T 3hja_A 301 EDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356 (356)
T ss_dssp CSCCCGGGGTTCCCSEEEEGGGCEECSTTEEEEEEEECTTHHHHHHHHHHHHHHC-
T ss_pred cCCeEeeeccCCCCceEEcCcCCEEEcCCEEEEEEEECCccchHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999964
No 9
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=100.00 E-value=3.6e-106 Score=766.41 Aligned_cols=288 Identities=47% Similarity=0.681 Sum_probs=282.1
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-||+|||+||+|+++|+.+|++|.|+|++|+|+++++|++++|++.|+||||||||.|+++++++.|+++||||||||+|
T Consensus 45 ~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSap 124 (335)
T 1obf_O 45 HLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAP 124 (335)
T ss_dssp HHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSC
T ss_pred HHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcCCcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCC-eEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 SA-DAP-MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s~-d~p-lvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
++ |+| |||||||++.|++.++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+++ ++||++|++
T Consensus 125 s~~dvp~~vV~gVN~~~~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~~~-~d~r~~r~~ 203 (335)
T 1obf_O 125 GGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYH-EDLRRARSA 203 (335)
T ss_dssp CCTTSSEECCTTTSGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCT
T ss_pred ccCCCCceEEccCCHHHhCcCccEEeCCcHHHHHHHHHHHHHHHhcCeeEEEEEEEchhhhhhhhhcccc-cccccccch
Confidence 97 799 999999999999777899999999999999999999999999999999999999999999985 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++|+++||||+|+||++|||+||||++||++||+++++|++++|||+++|+++++|+|||||+|+|+|+|
T Consensus 204 a~NiIP~~tGaakav~kVlP~L~gkltg~avRVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~v 283 (335)
T 1obf_O 204 TMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLV 283 (335)
T ss_dssp TTCCEEEECCHHHHHHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCC
T ss_pred hhccccCCCcchHhHhhhccccCCceEEEEEEeeccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
|+||+|++||||||+.+|++ +++++||++||||||||||||+||+.||+++
T Consensus 284 S~d~~~~~~ssi~d~~~~~~-~~~~vk~~~WyDNE~gys~r~~dl~~~~~~~ 334 (335)
T 1obf_O 284 SVDYNHDPASSTVDASLTKV-SGRLVKVSSWYDNEWGFSNRMLDTTVALMSA 334 (335)
T ss_dssp GGGGTTCCCSEEEEGGGCEE-ETTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred eeeeCCCCccceeccccccc-cCCEEEEEEEeCCCcchHhHHHHHHHHHhcc
Confidence 99999999999999999999 9999999999999999999999999999865
No 10
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=100.00 E-value=7.3e-106 Score=766.04 Aligned_cols=288 Identities=61% Similarity=0.945 Sum_probs=281.9
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
||+|||+||+|+++|+.++++|.|||++|+|+++++|++++|++.|+||||||||.|+++|++++|+++||||||||+|+
T Consensus 54 l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps 133 (345)
T 2b4r_O 54 LLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP 133 (345)
T ss_dssp HHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred HhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCC--CCCccccccc
Q psy6885 92 AD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGRGA 168 (301)
Q Consensus 92 ~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~--~~d~r~~r~~ 168 (301)
++ +||||||||++.|++.++||||||||||||+|+||+|||+|||++++||||||+|++|+++|+++ +++||++|++
T Consensus 134 ~~dvplvV~gVN~~~~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvhA~T~~q~~~d~~~~~~~d~r~~r~~ 213 (345)
T 2b4r_O 134 KDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCA 213 (345)
T ss_dssp SSSCCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSCSSSCCCGGGCCGGGGSCT
T ss_pred CCCCCEEEecCCHHHhCCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEeehhhchhhhhcccccccCCCccccch
Confidence 75 89999999999999777899999999999999999999999999999999999999999999986 3899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++|+++||||+|+||++|+|+||||++||++||+++++|++++|||+++|+++++|+|||||+|+|+|+|
T Consensus 214 a~NiIP~~tGaakav~kVlP~L~gkltg~avRVPv~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~V 293 (345)
T 2b4r_O 214 LSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVV 293 (345)
T ss_dssp TTCCEEEECCHHHHHHHHSGGGTTTEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCC
T ss_pred hhccCcCCCchHHHHHHhhhhcCCcEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
|+||+|++||||||+.+|++++|+++||++||||||||||||+||+.||++
T Consensus 294 S~d~~~~~~ssi~d~~~~~~~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 344 (345)
T 2b4r_O 294 SQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITT 344 (345)
T ss_dssp GGGGTTCCCSEEEEEEEEEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHC
T ss_pred EEeeCCCCcccccccccCeEecCCEEEEEEEeCCCcchHhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999964
No 11
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}
Probab=100.00 E-value=3.1e-105 Score=761.38 Aligned_cols=288 Identities=46% Similarity=0.739 Sum_probs=282.0
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-||+|||+||+|+++|+.++++|.|||++|+|+++++|++++|+++|+||||||||.|+++|+++.|+++||||||||+|
T Consensus 43 ~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisap 122 (342)
T 2ep7_A 43 HLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAP 122 (342)
T ss_dssp HHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSC
T ss_pred hhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-eEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 SADAP-MFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s~d~p-lvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
++|+| |||||||++.|++ .++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+| +++||++|++
T Consensus 123 s~dvp~~vV~gVN~~~~~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~p-~~d~r~~r~~ 201 (342)
T 2ep7_A 123 AKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLP-HKDFRRARAA 201 (342)
T ss_dssp CBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCC-CSSTTTTSBG
T ss_pred CCCCCceEEcCcCHHHhcccCCeEEECCChHHHHHHHHHHHHHHHcCeeEEEEEEEeecccchhhhcCC-cchhhhhhhH
Confidence 99999 9999999999997 6789999999999999999999999999999999999999999999998 5899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecC-CCCHHHHHHHHHHhhcC-------CCCccc
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGK-DATYDEIKAKVKAAAEG-------PLAGIL 240 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k-~~~~eei~~~l~~a~~~-------~lkgil 240 (301)
++||||++||++|+++||||+|+||++|+|+||||++||++||+++++| ++++|||+++|+++++| +|||||
T Consensus 202 a~NiIP~~tGaakav~kVlP~L~gkltg~avRVPv~~~s~~dltv~lek~~~t~eei~~~lk~a~~~~~~~~~~~lkgil 281 (342)
T 2ep7_A 202 AINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEIL 281 (342)
T ss_dssp GGCCEEECCCTTGGGGGTSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCSCHHHHHHHHHHHHHHHHTSCCGGGTTSE
T ss_pred hhCccCCCCChHHHHHHhhhccCCCEEEEEEEecccceEEEEEEEEEcCCCCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999 999999
Q ss_pred cccccceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 241 GYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 241 ~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
+|+|+|+||+||+|++||||||+.+|+++ ++++||++||||||||||||+||+.||+++
T Consensus 282 ~y~~~~~vS~d~~~~~~ssi~d~~~~~~~-~~~vk~~~wyDNE~gys~r~~dl~~~~~~~ 340 (342)
T 2ep7_A 282 QYCEDPIVSTDIVGNPHSAIFDAPLTQVI-DNLVHIAAWYDNEWGYSCRLRDLVIYLAER 340 (342)
T ss_dssp EEECSCCCGGGGTTCCCSEEEEGGGCEEE-TTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred cccCCCeEeeeECCCCccceecccccccc-CCEEEEEEEECCCccchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999 999999999999999999999999999764
No 12
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=100.00 E-value=3.6e-99 Score=718.97 Aligned_cols=288 Identities=50% Similarity=0.766 Sum_probs=280.6
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.+|+|||+||+|+++|+.+++.|.++|+.|+++++++|++++|++.|+|+||||||.|++++++++|+++||||||||+|
T Consensus 40 ~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsap 119 (331)
T 2g82_O 40 HLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP 119 (331)
T ss_dssp HHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred HhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 SAD-APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s~d-~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
++| +|++|||||++.|++ .++||||||||||||+|+|||||++|||+++.||||||+||+|+++|+++ +|||++|++
T Consensus 120 s~d~~p~vV~gVN~~~~~~~~~~IIsnasCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tg~q~~~d~~~-~d~r~~r~~ 198 (331)
T 2g82_O 120 AKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAA 198 (331)
T ss_dssp CBSCSEECCTTTTGGGCCTTTCCEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBG
T ss_pred CcCCCCEEeeccCHHHhCcCCCCEEECCChHHHHHHHHHHHHHHhcCccEEEEEEEeecccccchhcccc-ccccccchh
Confidence 987 799999999999996 47899999999999999999999999999999999999999999999985 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||+++|++++++||||+|+||++++|+||||++||+++|++++++++++|||+++|+++++|+|||||+|+|+|+|
T Consensus 199 a~NiIP~~tGaakav~kIlp~L~gkl~g~a~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~v 278 (331)
T 2g82_O 199 AINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIV 278 (331)
T ss_dssp GGCCEEECCCHHHHHTTTCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCC
T ss_pred hhCccccCCCchhhhhhhHHhcCCCEEEEEEEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhhcCccCCccCCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
|+||+|++||||||+.+|+++ |+++|+++||||||||||||+||+.||+++
T Consensus 279 s~d~~~~~~s~~~d~~~~~~~-~~~~k~~~wydne~gys~r~~d~~~~~~~~ 329 (331)
T 2g82_O 279 LQDIVMDPHSSIVDAKLTKAL-GNMVKVFAWYDNEWGYANRVADLVELVLRK 329 (331)
T ss_dssp GGGGTTCCCSEEEEGGGCEEE-TTEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred eeeeCCCCccceecchhcccc-CCEEEEEEEECCCchhHHHHHHHHHHHHhc
Confidence 999999999999999999999 899999999999999999999999999864
No 13
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A
Probab=100.00 E-value=5.5e-97 Score=714.05 Aligned_cols=289 Identities=45% Similarity=0.717 Sum_probs=281.8
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.+|+|||+||+|+++|+.+++.|.++|+.|+++++++|++++|++.|+|+||||||.|++++++++|+++||||||||+|
T Consensus 45 ~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~p 124 (380)
T 2d2i_A 45 HLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAP 124 (380)
T ss_dssp HHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred HhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCC
Confidence 47999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCC-CC-eEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccc
Q psy6885 91 SAD-AP-MFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRG 167 (301)
Q Consensus 91 s~d-~p-lvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~ 167 (301)
++| +| ++|||||++.|++ .++||||||||||||+|++|+||++|||++++|||+||+|++|+++|+++ ++||++|+
T Consensus 125 s~d~~p~~~V~GVN~e~~~~~~~~IVSNasCtTn~lap~lk~L~d~fgI~~g~mTTvha~Tg~q~~vD~~~-~d~r~gR~ 203 (380)
T 2d2i_A 125 GKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARA 203 (380)
T ss_dssp CBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSC
T ss_pred CCCCCCceEEcccCHHHhcccCCcEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEeeccccchhhccch-hhhhhcch
Confidence 987 78 9999999999997 47899999999999999999999999999999999999999999999995 89999999
Q ss_pred cccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccce
Q psy6885 168 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEV 247 (301)
Q Consensus 168 ~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~ 247 (301)
+++||||++||++++++|+||||++|++++|+||||++||+++|++++++++++|||+++|+++++|+|||||+|+|+|+
T Consensus 204 aa~NiIP~~Tgaakav~kvlPeL~gkl~g~avRVPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~~lkgil~y~~~~~ 283 (380)
T 2d2i_A 204 AAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPL 283 (380)
T ss_dssp GGGCCEEEECCHHHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCC
T ss_pred HhhCeEeccCchHHHHHhhhHhhhCcEEEEEEEeccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhCCCCCccCCcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 248 VSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 248 VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+||+|++||||||+.+|++++++++||++||||||||||||+||+.||+++
T Consensus 284 vS~d~~~~~~ssi~d~~~~~~~~~~~vk~~~wyDNe~gys~r~~d~~~~~~~~ 336 (380)
T 2d2i_A 284 VSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARK 336 (380)
T ss_dssp CGGGGTTCCCSEEEEGGGCEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHTT
T ss_pred eeeeeCCCCcceEEecccCceecCCEEEEEEEECCCcchHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999865
No 14
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*
Probab=100.00 E-value=3.5e-96 Score=699.77 Aligned_cols=289 Identities=43% Similarity=0.683 Sum_probs=281.1
Q ss_pred ccceeccCCCCCCceEE-ecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecC
Q psy6885 11 ARFSSDEDDLKSPSTFF-SCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISA 89 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~-a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsa 89 (301)
.+|+|||+||+|.++|+ .+++.|.++|+.|+++++++|++++|++.|+|+||||||.|++++++++|+++|||+|++|+
T Consensus 44 ~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSa 123 (337)
T 1rm4_O 44 HLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITA 123 (337)
T ss_dssp HHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESS
T ss_pred HHhcccccCCCccceeEEecCCeEEECCeEEEEEecCChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECC
Confidence 47899999999999999 88889999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCC-CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 90 PSAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 90 ps~d-~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
|+.| +|++|||||++.|++.++||||||||||||+|++|+||++|||+++.|||+||+|++|+++|+++ ++||++|++
T Consensus 124 p~r~d~p~~V~GVN~~~~~~~~~IIsNasCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tgaq~l~d~~~-~~~r~~r~~ 202 (337)
T 1rm4_O 124 PGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAA 202 (337)
T ss_dssp CCBSSCCBCCTTTTGGGCCTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCT
T ss_pred cccCCCCeEeecCCHHHhCCCCeEEECCChHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCccchhhcch-hhhccchhh
Confidence 9876 79999999999998667999999999999999999999999999999999999999999999985 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||++||++++++|++|||++|++++|+||||++||+++|++++++++++|||+++|+++++|+|||||+|+|+|+|
T Consensus 203 a~NiiP~~tgaakav~kvlPel~gkl~~~a~RVP~~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~~v 282 (337)
T 1rm4_O 203 CLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLV 282 (337)
T ss_dssp TTCCEEECCCHHHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCC
T ss_pred hcCcccccchhhHHHHhhhhhhcCcEEEEEEEecCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
|+||+|++||||||+.+|++++++++|+++||||||||||||+||+.||+++
T Consensus 283 s~d~~~~~~s~i~d~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 334 (337)
T 1rm4_O 283 SIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANK 334 (337)
T ss_dssp GGGGTTCCSSEEEEGGGCEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred ecccCCCCcccccchhccceecCCEEEEEEEECCCccchhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999864
No 15
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=100.00 E-value=1e-95 Score=696.30 Aligned_cols=289 Identities=54% Similarity=0.807 Sum_probs=281.3
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-+|+|||+||+|+++|+++++.|.++|+.|+++++++|++++|++.|+|+||||||.|++++++++|+++||||||||+|
T Consensus 42 ~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~p 121 (334)
T 3cmc_O 42 HLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP 121 (334)
T ss_dssp HHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred HHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCC
Confidence 47899999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 SAD-APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s~d-~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
++| +|++|||||++.|++ .++||||||||||||+|+||||+++|||+++.|||+||+||+|+++|+++ ++||++|++
T Consensus 122 a~d~~p~~V~eVN~~~i~~~~~~IIsNpsCttn~lap~lkpL~~~~gI~~~~mtTvha~Sg~q~~~d~~~-~~~r~~r~~ 200 (334)
T 3cmc_O 122 AKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAA 200 (334)
T ss_dssp CBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBT
T ss_pred CccCCCEeccccCHHHhCccCCeEEECCChHHHHHHHHHHHHHHhcCceeeeEEEEEeccchhhhccccc-cccccchhh
Confidence 987 799999999999986 37899999999999999999999999999999999999999999999984 899999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||+++|+++|++|+||+|+||++++|+||||++||++++++++++++++|||+++|+++++++|||||+|+|+|+|
T Consensus 201 a~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~rVP~~~gs~~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~v 280 (334)
T 3cmc_O 201 AESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLV 280 (334)
T ss_dssp TTCCEEEECSHHHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCC
T ss_pred hhCEEeeccCcccchhhhChhhcCcEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCCcccCCCCCEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
|+||+|++||||||+.+|++++++++|+++||||||||||||+||+.||+++
T Consensus 281 s~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 332 (334)
T 3cmc_O 281 SRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332 (334)
T ss_dssp GGGGTTCCSSEEEEGGGCEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred eeeeCCCCccceeccccCeEecCCEEEEEEEeCCCchhhhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999864
No 16
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=100.00 E-value=2.2e-95 Score=695.30 Aligned_cols=289 Identities=45% Similarity=0.718 Sum_probs=281.4
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.+|+|||+||+|+++|+.+++.|.++|+.|+++++++|++++|++.++|+||||||.|++++++++|+++||||||||+|
T Consensus 45 ~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ 124 (339)
T 3b1j_A 45 HLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAP 124 (339)
T ss_dssp HHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred HHhccccccCCCCCcEEEcCCeeeecCceEEEEecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCC
Confidence 46899999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCC-CC-eEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccc
Q psy6885 91 SAD-AP-MFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRG 167 (301)
Q Consensus 91 s~d-~p-lvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~ 167 (301)
++| +| ++|||||++.|++ .++||||||||||||+|++|+||++|||++++|||+||+|++|+++|+++ ++||++|+
T Consensus 125 ~~~~~p~~~V~gVN~~~~~~~~~~IISnasCtTn~lap~lk~L~~~fgI~~~~~tTvha~Tg~q~~vd~~~-~d~r~~r~ 203 (339)
T 3b1j_A 125 GKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARA 203 (339)
T ss_dssp CBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSC
T ss_pred CCCCCCeeEEcccCHHHhCcCCCeEEECCcchhhHHHHHHHHHHHhCCeeEEEEEEEEeecCCchhcccch-hhhhcccc
Confidence 986 78 9999999999997 47899999999999999999999999999999999999999999999985 89999999
Q ss_pred cccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccce
Q psy6885 168 AAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEV 247 (301)
Q Consensus 168 ~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~ 247 (301)
+++||||++||++++++||+|+|+||++++|+||||++||++++++++++++++|||+++|+++++++|||||+|+|+|+
T Consensus 204 a~~NiiP~~tgaakav~kVlpeL~gkl~g~a~rVP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~~~l~gil~y~~~~~ 283 (339)
T 3b1j_A 204 AAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPL 283 (339)
T ss_dssp TTSCCEEEECSHHHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHSTTBTTEEEECSCC
T ss_pred HHHceEcccCchHHHHHHHhHhhcCcEEEEEEEeccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhcCCCCCccCccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 248 VSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 248 VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
||+||+|++||+|||+.+|++++++++|+++||||||||||||+||+.||+++
T Consensus 284 vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 336 (339)
T 3b1j_A 284 VSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARK 336 (339)
T ss_dssp CGGGGTTCCSSEEEEGGGCEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred eehhcCCCCCceEEecccCceecCCEEEEEEEeCCCcchHhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999864
No 17
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=5.7e-95 Score=690.64 Aligned_cols=288 Identities=49% Similarity=0.766 Sum_probs=281.0
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.+|+|||+||+|+++|+.+++.|.++|+.|+++++++|++++|++.|+|+||||||.|++++++++|+++||||||||+|
T Consensus 43 ~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~ 122 (332)
T 1hdg_O 43 HLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP 122 (332)
T ss_dssp HHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred hhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCChHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCC
Confidence 46999999999999999999999999999999988999999999889999999999999999999999999999999999
Q ss_pred CCCCC-eEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccc
Q psy6885 91 SADAP-MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 169 (301)
Q Consensus 91 s~d~p-lvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a 169 (301)
++|+| ++|||||++.|++.++||||||||||||+|+||||+++|||+++.|||+||+||+|+++|+++ ++||++|+++
T Consensus 123 a~d~p~~~V~eVN~~~i~~~~~iIsNpsCttn~lap~lkpL~~~~gI~~~~~ttvha~Sg~q~~~d~~~-~~~~~~r~~a 201 (332)
T 1hdg_O 123 AKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAA 201 (332)
T ss_dssp CBSCSEECCTTTTGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGG
T ss_pred CCCCCceEEeccCHHHhCCCCcEEECCccHHHHHHHHHHHHHHhcCeeEeEEEEEEeccchhhhhcCcc-cccccchhHh
Confidence 99999 999999999998657899999999999999999999999999999999999999999999985 8999999999
Q ss_pred cccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceee
Q psy6885 170 QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVS 249 (301)
Q Consensus 170 ~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS 249 (301)
+||||+++|+++|++|+||+|+||++++|+||||++||++++++++++++++|||+++++++++++|||||+|+|+|+||
T Consensus 202 ~NiiP~~tg~a~ei~kvLp~l~gkl~~~a~rVP~~~g~l~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs 281 (332)
T 1hdg_O 202 VNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVS 281 (332)
T ss_dssp GCCEEECCTHHHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCG
T ss_pred hCcccccCCcccchhhhCccccCCEEEEeEEccccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCcccccCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 250 SDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 250 ~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
+||+|++||||||+.+|++++++++|+++||||||||||||+|++.||++
T Consensus 282 ~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~ 331 (332)
T 1hdg_O 282 SDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLK 331 (332)
T ss_dssp GGGTTCCCSEEEETTTCEEETTTEEEEEEEECTTHHHHHHHHHHHHHGGG
T ss_pred eeeCCCCccceeccccCeEecCCEEEEEEEeCCCccchhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999975
No 18
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=100.00 E-value=1.3e-94 Score=692.64 Aligned_cols=290 Identities=64% Similarity=0.951 Sum_probs=279.1
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
-+|+||++||+|+++|+.+++.|.+||+.|+++++++|++++|++.|+|+||||||.|++++++++|+++||||||||+|
T Consensus 59 ~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~p 138 (354)
T 3cps_A 59 YLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAP 138 (354)
T ss_dssp HHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred hhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCC
Confidence 46899999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCC-CCeEEecCCcCCCCCC-ccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCC--CCCccccc
Q psy6885 91 SAD-APMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGR 166 (301)
Q Consensus 91 s~d-~plvV~gVN~~~~~~~-~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~--~~d~r~~r 166 (301)
++| +|++|||||++.|++. .+||||||||||||+|+||||+++|||+++.|||+||+|++|+++|+++ .++||++|
T Consensus 139 add~~p~~V~GVN~~~~~~~~~~IISNpsCtTn~lap~lkpL~~~~gI~~g~mtTvha~Tg~q~~vd~~~~~~k~~r~~r 218 (354)
T 3cps_A 139 PKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGR 218 (354)
T ss_dssp CSSCCCBCCTTTTGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCCCC--CCGGGS
T ss_pred CCCCCCEEEeccCHHHhCcCCCcEEECCCcHHHHHHHHHHHHHHhCCeeEEEEEEEecccccchhhhccchhcccccccc
Confidence 986 7999999999999974 7899999999999999999999999999999999999999999999985 27899999
Q ss_pred ccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccc
Q psy6885 167 GAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDE 246 (301)
Q Consensus 167 ~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~ 246 (301)
++++||||+++|+++|++|+||+|+||++++|+||||++||++++++++++++++|||+++++++++++|||||+|+|+|
T Consensus 219 ~aa~NiiP~~tG~akei~kvlp~l~gkl~~~a~rVP~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~~lkgil~y~~~~ 298 (354)
T 3cps_A 219 CAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDD 298 (354)
T ss_dssp CTTSCCEEEECCHHHHHHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC
T ss_pred chhccEEecCcCHHHHHHHHHHhcCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCCCCccCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 247 VVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 247 ~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
+||+||+|++||||||+.+|++++++++||++||||||||||||+||+.||+++
T Consensus 299 ~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 352 (354)
T 3cps_A 299 VVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASR 352 (354)
T ss_dssp CCGGGGTTCCCSEEEEGGGCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred eeeEEEcCCCcceEEecccCeEecCCEEEEEEEECCCcchHhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999764
No 19
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=100.00 E-value=8e-94 Score=684.14 Aligned_cols=291 Identities=64% Similarity=1.014 Sum_probs=283.0
Q ss_pred ccceeccCCCCCC-ceEEe-cCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 11 ARFSSDEDDLKSP-STFFS-CKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 11 ~~~~~d~~~g~~~-~~v~a-~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
.+|+|||+||+|+ |+|++ +++.|.++|+.|.++++++|++++|.+.++|+||||||.|.+++.+++|+++|+||||||
T Consensus 45 ~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs 124 (337)
T 3e5r_O 45 YMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVIS 124 (337)
T ss_dssp HHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEES
T ss_pred HhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEe
Confidence 5789999999999 99999 899999999999999999999999988899999999999999999999999999999999
Q ss_pred CCCCCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 89 APSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 89 aps~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
+|++|+|++|||||++.|++.++||||||||||||+|+||||+++|||+++.|||+||+|++|+++|+++.++||++|++
T Consensus 125 ~pa~d~p~~V~gvN~~~~~~~~~iIsnpsCtt~~la~~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~ 204 (337)
T 3e5r_O 125 APSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAA 204 (337)
T ss_dssp SCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCSGGGSBG
T ss_pred cCCCCCCEEEeccCHHHhCCCCcEEECCChHHHHHHHHHHHHHHhcCccccceeEEEeeccccccccccccccccccccH
Confidence 99999999999999999987678999999999999999999999999999999999999999999999976799999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||+++|+++|++|+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+|
T Consensus 205 ~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~~~a~~~~l~gil~y~~~~~v 284 (337)
T 3e5r_O 205 SFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLV 284 (337)
T ss_dssp GGSCEEEECCHHHHHHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCC
T ss_pred hhCccccCCCchHHHHHHHHHhCCcEEEEEEEeccCCeEEEEEEEEECCCccHHHHHHHHHHHhhCCCCCcccCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhcC
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~~ 301 (301)
|+||+|++||||||+.+|++++++++|+++||||||||||||+||+.||++++
T Consensus 285 s~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gys~r~~~~~~~~~~~~ 337 (337)
T 3e5r_O 285 STDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337 (337)
T ss_dssp GGGGTTCCCSEEEETTTCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHCC
T ss_pred eeeecCCCCceEEecccCcEecCCEEEEEEEeCCCcchHhHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999998753
No 20
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Probab=100.00 E-value=4.3e-94 Score=684.19 Aligned_cols=287 Identities=63% Similarity=0.972 Sum_probs=279.7
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
||+|||+||+|+++|+++++.|.+||+.|+++++++|++++|.+.++|+||||||.|++++++++|+++|||+|++|+|+
T Consensus 43 l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~ 122 (330)
T 1gad_O 43 MLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS 122 (330)
T ss_dssp HHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred hhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999999999999999988899999999999999999999999999999999998
Q ss_pred C-CCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccccc
Q psy6885 92 A-DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQ 170 (301)
Q Consensus 92 ~-d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~ 170 (301)
+ |+|++|||||++.|+ .++||||||||||||+|+||||+++|||+++.|||+||+|++|+++|+++.++||++|++++
T Consensus 123 ~~~~p~~V~GvN~~~~~-~~~iIsNpsCtt~~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~ 201 (330)
T 1gad_O 123 KDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQ 201 (330)
T ss_dssp SSSCCBCCTTTTGGGCC-SCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCSSCGGGGSBTTT
T ss_pred CCCCCeEeecCCHHHhC-CCCEEEcCChHHHHHHHHHHHHHHhcCeeEEEEEEEEecccccccccccccCCCccccchhh
Confidence 5 479999999999998 67899999999999999999999999999999999999999999999997689999999999
Q ss_pred ccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeee
Q psy6885 171 NIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSS 250 (301)
Q Consensus 171 NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~ 250 (301)
||||+++|+++|++|+||+|+||++++|+||||++||++++++++++++++|||+++++++++++|||||+|+|+|+||+
T Consensus 202 NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~k~a~~~~l~gil~y~~~~~vs~ 281 (330)
T 1gad_O 202 NIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVST 281 (330)
T ss_dssp CCEEEECCTTTTHHHHSGGGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGG
T ss_pred CeEEcCCCcchhHHHHHHHhcCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhcCCCCCEEeeECCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhh
Q psy6885 251 DFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 251 D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~ 299 (301)
||+|++||||||+.+|++++++++|+++||||||||||||+||+.||++
T Consensus 282 d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~ 330 (330)
T 1gad_O 282 DFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330 (330)
T ss_dssp GGTTCCSSEEEETTTCEEEETTEEEEEEEECTTHHHHHHHHHHHHHTTC
T ss_pred eECCCCcceEEecccCeEecCCEEEEEEEECCCchhhhHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999863
No 21
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=100.00 E-value=3.4e-93 Score=679.31 Aligned_cols=290 Identities=74% Similarity=1.089 Sum_probs=282.3
Q ss_pred cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
+|+|||+||+|+++++++++.|.++|+.|+++++++|++++|++.++|+||||||.|.+++.+++|+++|||+|++|+|+
T Consensus 46 l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~ 125 (335)
T 1u8f_O 46 MFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS 125 (335)
T ss_dssp HHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred HhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCC
Confidence 57999999999999999999999999999999999999999988899999999999999999999999999999999998
Q ss_pred CCCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccccc
Q psy6885 92 ADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQN 171 (301)
Q Consensus 92 ~d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~N 171 (301)
+|+|++|||||++.|++.++||||||||||||+|+||||+++|||++++|||+|++||+|+.+|+++.++||++|++++|
T Consensus 126 ~~~p~~V~gvN~~~~~~~~~iIsnpsCtt~~l~~~lkpL~~~~gI~~~~~tt~~a~Tg~q~~vd~~~~~~~~~~r~~~~N 205 (335)
T 1u8f_O 126 ADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQN 205 (335)
T ss_dssp SSSCBCCTTTTGGGCCTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTC
T ss_pred CCCCeEEeccCHHHhCCCCCEEECCChHHHHHHHHHHHHHHhCCcceeEEEEEeccccCccccccccccccccchhhhcC
Confidence 88999999999999986678999999999999999999999999999999999999999999999865799999999999
Q ss_pred cccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeeec
Q psy6885 172 IIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSD 251 (301)
Q Consensus 172 IIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~D 251 (301)
|||+++|++++++|+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+|
T Consensus 206 iiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~~~~t~eei~~~~~~a~~~~~~~il~~~~~~~vs~d 285 (335)
T 1u8f_O 206 IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSD 285 (335)
T ss_dssp CEEEECCTTTTHHHHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGG
T ss_pred ceeccCChhHHHHHHHHHhCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCcEEcccCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhcC
Q psy6885 252 FIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301 (301)
Q Consensus 252 ~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~~ 301 (301)
|+|++||+|||+.+|++++++++||++||||||||||||+||+.||++++
T Consensus 286 ~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gy~~r~~~~~~~~~~~~ 335 (335)
T 1u8f_O 286 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335 (335)
T ss_dssp GTTCCCSEEEETTTCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCceEEeCCCCEEecCCEEEEEEEEcCcchhHhHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999998764
No 22
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*
Probab=100.00 E-value=2.1e-93 Score=681.75 Aligned_cols=289 Identities=34% Similarity=0.558 Sum_probs=270.8
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.+|+|||+||+|+++|+++++.|.++|+.|+++++++|++++|++.|+|+||||||.|++++++++|+++|+||||||+|
T Consensus 46 ~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ 125 (339)
T 2x5j_O 46 HLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHP 125 (339)
T ss_dssp HHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSC
T ss_pred HHhcccccCCCCCceEEEcCCeeEECCEEEEEEecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEecc
Confidence 46899999999999999999999999999999989999999999889999999999999999999999999999999999
Q ss_pred C-CCCC-eEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccc
Q psy6885 91 S-ADAP-MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 91 s-~d~p-lvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~ 168 (301)
+ .|+| ++|||||++.|+++.+||||||||||||+|+||||+++|||+++.|||+||+|++|+++|+++ ++||++|++
T Consensus 126 ad~d~p~~~V~gvN~~~~~~~~~iIsnpsCttn~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~~d~~~-~d~r~~r~a 204 (339)
T 2x5j_O 126 GSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYH-PDLRRTRAA 204 (339)
T ss_dssp CCTTSSEECCTTTSGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCC------------CTTTTSCC
T ss_pred ccCCCCceeecccCHHHhcCCCCEEECCCcHHHHHHHHHHHHHHccCcceeeEEEEEecccccccccccc-ccccchhhH
Confidence 8 6789 999999999999756899999999999999999999999999999999999999999999985 889999999
Q ss_pred ccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccccee
Q psy6885 169 AQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248 (301)
Q Consensus 169 a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~V 248 (301)
++||||+++|++++++|+||+|+||++++|+||||++||++++++++++++++|||+++++++++++|||||+|+|+|+|
T Consensus 205 ~~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~rVP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~v 284 (339)
T 2x5j_O 205 SQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLV 284 (339)
T ss_dssp CCCCEEECCCHHHHHHHHSGGGTTSEEEEEEECSSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCC
T ss_pred HhCcccccCChHHHHHHHHHHhcCcEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcCCCcEEcccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885 249 SSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300 (301)
Q Consensus 249 S~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~ 300 (301)
|+||+|++||+|||+.+|++++++++|+++||||||||||||+||+.||+++
T Consensus 285 s~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 336 (339)
T 2x5j_O 285 SVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMATV 336 (339)
T ss_dssp GGGGTTCCSSEEEEEEEEEEETTTEEEEEEEECHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCCCceEEEcccceeccCCEEEEEEEeCCCcccHhHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999864
No 23
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.1e-50 Score=381.93 Aligned_cols=198 Identities=18% Similarity=0.152 Sum_probs=180.4
Q ss_pred cceec--cCCCCC--CceE-EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHH-HHHHCCCCeE
Q psy6885 12 RFSSD--EDDLKS--PSTF-FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKAS-AHLAGGAKKV 85 (301)
Q Consensus 12 ~~~~d--~~~g~~--~~~v-~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~-~hl~aGak~V 85 (301)
+|+|| ++||+| +++| +.+++.+.++|+ +..+.| ++|+||||||.+.+++.++ .|+++| ++|
T Consensus 43 l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~---------~~~~~~---~vDiV~eatg~~~s~~~a~~~~l~aG-~~V 109 (343)
T 2yyy_A 43 LAVEKGYKLFVAIPDNERVKLFEDAGIPVEGT---------ILDIIE---DADIVVDGAPKKIGKQNLENIYKPHK-VKA 109 (343)
T ss_dssp HHHHTTCCEEESSCCHHHHHHHHHTTCCCCCB---------GGGTGG---GCSEEEECCCTTHHHHHHHHTTTTTT-CEE
T ss_pred HHHhcCCccccccCCCceeecccCCeEEECCc---------hHHhcc---CCCEEEECCCccccHHHHHHHHHHCC-CEE
Confidence 57899 999999 8888 778888888873 333445 7999999999999999996 999999 568
Q ss_pred EecCCCC-C-CC-eEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCc
Q psy6885 86 IISAPSA-D-AP-MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLW 162 (301)
Q Consensus 86 iIsaps~-d-~p-lvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~ 162 (301)
|+|+|.+ | +| |||||||+++|+. ++||||||||||||+|+||+||++|||+++.||||||+|+. +
T Consensus 110 I~sap~~~d~vp~~vV~gvN~~~~~~-~~iIsn~sCtT~~lap~lk~L~~~fgI~~~~vtT~~a~sg~--------~--- 177 (343)
T 2yyy_A 110 ILQGGEKAKDVEDNFNALWSYNRCYG-KDYVRVVSCNTTGLCRILYAINSIADIKKARIVLVRRAADP--------N--- 177 (343)
T ss_dssp EECTTSCGGGSSEEECTTTTHHHHTT-CSEEEECCHHHHHHHHHHHHHHTTSEEEEEEEEEEEESSCT--------T---
T ss_pred EECCCccccCCCceEEcccCHHHhcc-CCEEeccchhhHHHHHHHHHHHHHcCceEEEEEeeeeccCc--------C---
Confidence 8899886 5 89 9999999999985 78999999999999999999999999999999999999982 1
Q ss_pred ccccccccccccC----CCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC
Q psy6885 163 RDGRGAAQNIIPA----ATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG 234 (301)
Q Consensus 163 r~~r~~a~NIIP~----~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~ 234 (301)
+++|++++||||+ ++|++|+++|+||+|++|++++|+||||++||+++|+++|++++++||++++|++++..
T Consensus 178 ~~~r~~~~NiiP~~i~~~tg~~k~~~kilp~l~gkl~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~v 253 (343)
T 2yyy_A 178 DDKTGPVNAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRI 253 (343)
T ss_dssp CSSCCCSSCCEESSSSSSCTHHHHHHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHHHSTTE
T ss_pred cchhhHHhcccCCCCCCCCcchHHHHHhhhccccceeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHHhCCCC
Confidence 5578999999999 99999999999999999999999999999999999999999999999999999999754
No 24
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}
Probab=100.00 E-value=4.4e-45 Score=347.18 Aligned_cols=259 Identities=20% Similarity=0.202 Sum_probs=210.7
Q ss_pred EEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-----CCCeEEec
Q psy6885 26 FFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-----DAPMFVCG 100 (301)
Q Consensus 26 v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~-----d~plvV~g 100 (301)
.+++|+++.++|+.+.++++ +++ +| ++|+||+|+|.+.++++++.|+++|+ ++|+++++ |+|++|||
T Consensus 36 ~~~~g~~l~~~g~~i~v~~~-~~~--~~---~~DvV~~a~g~~~s~~~a~~~~~~G~--~vId~s~~~R~~~~~~~~vpe 107 (331)
T 2yv3_A 36 PRSAGVRLAFRGEEIPVEPL-PEG--PL---PVDLVLASAGGGISRAKALVWAEGGA--LVVDNSSAWRYEPWVPLVVPE 107 (331)
T ss_dssp GGGSSCEEEETTEEEEEEEC-CSS--CC---CCSEEEECSHHHHHHHHHHHHHHTTC--EEEECSSSSTTCTTSCBCCTT
T ss_pred cccCCCEEEEcCceEEEEeC-Chh--hc---CCCEEEECCCccchHHHHHHHHHCCC--EEEECCCccccCCCCCEEEcC
Confidence 35678899999999999776 454 58 79999999999999999999999999 56666654 68999999
Q ss_pred CCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccc------------cccccCCCCCCccccccc
Q psy6885 101 VNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT------------QKTVDGPSGKLWRDGRGA 168 (301)
Q Consensus 101 VN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~------------q~~lD~~~~~d~r~~r~~ 168 (301)
||++.|+...+|||||||+|+|++|+|+||+++|||+++.|||+|++||+ |+++|+++.+++|++|++
T Consensus 108 vN~~~i~~~~~iIanp~C~tt~~~~~l~pL~~~~~I~~~~vtt~~~~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~ 187 (331)
T 2yv3_A 108 VNREKIFQHRGIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPL 187 (331)
T ss_dssp SCGGGGGGCSSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCC
T ss_pred cCHHHhcCCCCEEECCCHHHHHHHHHHHHHHHhCCceEEEEEEEeecccCCcchhHHHHHHHHhhhcCccccccccchhh
Confidence 99999986467999999999999999999999999999999999999999 888998877899999999
Q ss_pred ccccccCC--------Cchhhhh----hhhc--cccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC
Q psy6885 169 AQNIIPAA--------TGAAKAV----GKVI--PALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG 234 (301)
Q Consensus 169 a~NIIP~~--------tG~ak~~----~kvl--pel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~ 234 (301)
++||+|++ |++++.+ +|++ |++ +++++|+|||+++||++++++++++++++||++++|++++-
T Consensus 188 a~niiP~~~~~~~~~ht~e~~~i~~e~~kil~~~~l--~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~~- 264 (331)
T 2yv3_A 188 PFNVIPHIDAFQENGYTREEMKVVWETHKIFGDDTI--RISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKEAPG- 264 (331)
T ss_dssp TTCCBSCCSCBCTTSCBHHHHHHHHHHHHHTTCTTC--EEEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHTTSTT-
T ss_pred hcCcccccCccccCCCcHHHHHHHHHHHHHhCCCCc--eEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHcCCC-
Confidence 99999999 7776666 8998 877 69999999999999999999999999999999999998542
Q ss_pred CCCccccccc---cceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCC-chhhhhHHHHHHHHhh
Q psy6885 235 PLAGILGYTE---DEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNE-YGYSNRVVDLIKYIQT 299 (301)
Q Consensus 235 ~lkgil~~~e---~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE-~gy~~r~~d~~~~~~~ 299 (301)
--++.-.+ -|. ..+..|..+-.|--.... ...++.+.++++.||- +|.|-+-|-.|..|.+
T Consensus 265 --v~v~~~~~~~~~p~-~~~~~g~~~~~igr~~~d-~~~~~~l~~~~~~DNl~kGAAg~AVq~~nl~~~ 329 (331)
T 2yv3_A 265 --VEVVDEPEAKRYPM-PLTASGKWDVEVGRIRKS-LAFENGLDFFVVGDQLLKGAALNAVQIAEEWLK 329 (331)
T ss_dssp --CCBCCBTTTTBCCC-HHHHTTCSSEEEEEEEEC-SSSTTEEEEEEEEETTHHHHTTHHHHHHHHHC-
T ss_pred --eEEEeCCCcCCCCC-hhhccCCceEEEEEEEEC-CCCCCEEEEEEEechHHHHHHHHHHHHHHHHhh
Confidence 11221100 011 124444443333211100 0034678999999999 8999999999888854
No 25
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=100.00 E-value=3.3e-42 Score=327.87 Aligned_cols=259 Identities=19% Similarity=0.174 Sum_probs=188.0
Q ss_pred CCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-----CCCeEEecCCcC
Q psy6885 30 KWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-----DAPMFVCGVNLD 104 (301)
Q Consensus 30 ~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~-----d~plvV~gVN~~ 104 (301)
|+.+.++|+.+.+. +.+++ +|. ++|+||+|+|.+.+++.++.|+++|+ ++|+++++ ++|++|||||++
T Consensus 43 G~~~~~~~~~i~~~-~~~~~--~~~--~vDvVf~a~g~~~s~~~a~~~~~~G~--~vId~s~~~R~~~~~~~~vpevN~~ 115 (336)
T 2r00_A 43 GKTYRFNGKTVRVQ-NVEEF--DWS--QVHIALFSAGGELSAKWAPIAAEAGV--VVIDNTSHFRYDYDIPLVVPEVNPE 115 (336)
T ss_dssp TCEEEETTEEEEEE-EGGGC--CGG--GCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTTCGG
T ss_pred CCceeecCceeEEe-cCChH--Hhc--CCCEEEECCCchHHHHHHHHHHHcCC--EEEEcCCccccCCCCCeEeccCCHH
Confidence 56677999988883 34443 685 89999999999999999999999999 45555543 689999999999
Q ss_pred CCCCC--ccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc-cccCCCC-----------CCccccccccc
Q psy6885 105 AYDPS--FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK-TVDGPSG-----------KLWRDGRGAAQ 170 (301)
Q Consensus 105 ~~~~~--~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~-~lD~~~~-----------~d~r~~r~~a~ 170 (301)
.|+.. .+|||||||+|+|++|+|+||+++|||+++.|||||++||+|+ .+|+++. .+++++|++++
T Consensus 116 ~i~~~~~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~vtt~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 195 (336)
T 2r00_A 116 AIAEFRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAF 195 (336)
T ss_dssp GGGGGGGTTEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSSCCTTSCC--------------------------
T ss_pred HhccccCCcEEECCChHHHHHHHHHHHHHHhCCccEEEEEEEEecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhc
Confidence 99852 5699999999999999999999999999999999999999985 7887642 37899999999
Q ss_pred ccccCCC-----ch-------hhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCc
Q psy6885 171 NIIPAAT-----GA-------AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAG 238 (301)
Q Consensus 171 NIIP~~t-----G~-------ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkg 238 (301)
|+||+++ |+ .++++|+||+++++++++|+|||+++||++++++++++++++||++++|++++ +--
T Consensus 196 niip~~~~~~~~gh~~Ee~k~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~~~~---~v~ 272 (336)
T 2r00_A 196 NCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLEQTD---GIE 272 (336)
T ss_dssp ---CCBCTTTCSSCBHHHHHHHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHHHST---TEE
T ss_pred CcccccCCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHHhCC---CeE
Confidence 9999975 74 56678899999999999999999999999999999999999999999999843 222
Q ss_pred cccccccceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCC-chhhhhHHHHHHHHhh
Q psy6885 239 ILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNE-YGYSNRVVDLIKYIQT 299 (301)
Q Consensus 239 il~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE-~gy~~r~~d~~~~~~~ 299 (301)
++...+-|..-.+..|..+-.|--..... ..++.+.++++.||- +|-|-+-|-.|..|..
T Consensus 273 v~~~~~~p~~~~~v~g~~~~~vgr~~~d~-~~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~~ 333 (336)
T 2r00_A 273 LFRGADFPTQVRDAGGKDHVLVGRVRNDI-SHHSGINLWVVADNVRKGAATNAVQIAELLVR 333 (336)
T ss_dssp ECCCCSSGGGCCCCCSSSCEEEEEEEEET-TEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCcCHHHhCCCceEEEEEEEecC-CCCCEEEEEEEehhHHHhHHHHHHHHHHHHHh
Confidence 22211112211144444333321000000 023568888999998 7999888888887753
No 26
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=1.1e-42 Score=331.73 Aligned_cols=262 Identities=15% Similarity=0.118 Sum_probs=205.4
Q ss_pred cCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC--CCCeEEecCCcCCC
Q psy6885 29 CKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA--DAPMFVCGVNLDAY 106 (301)
Q Consensus 29 ~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~--d~plvV~gVN~~~~ 106 (301)
.|+.+.++|+.+.+.. .+++. |. ++|+||+|+|.+.+++.++.|+++|+|+|++|++.. ++|++|||||++.|
T Consensus 45 ~g~~~~~~g~~i~~~~-~~~~~--~~--~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~i 119 (340)
T 2hjs_A 45 AGQRMGFAESSLRVGD-VDSFD--FS--SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERL 119 (340)
T ss_dssp TTCEEEETTEEEECEE-GGGCC--GG--GCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGG
T ss_pred CCCccccCCcceEEec-CCHHH--hc--CCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHHH
Confidence 3456778888887743 34543 75 899999999999999999999999998777788763 47999999999999
Q ss_pred CCCc--cEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc-cccCCC--CCCccc---------cccccccc
Q psy6885 107 DPSF--KVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK-TVDGPS--GKLWRD---------GRGAAQNI 172 (301)
Q Consensus 107 ~~~~--~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~-~lD~~~--~~d~r~---------~r~~a~NI 172 (301)
+..+ +|||||||+|+|++|+|+||+++|||+++.|||+|++||+|+ .+|+++ .++||+ +|++++|+
T Consensus 120 ~~~~~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~v~t~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ni 199 (340)
T 2hjs_A 120 ASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNL 199 (340)
T ss_dssp GGSCSSCEEECCCHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCC
T ss_pred hcCcCCCEEEcCCHHHHHHHHHHHHHHHhcCcceEEEEEecccCCCCccccHhHHHHHHHHhccCCccccccchhhccCe
Confidence 8632 799999999999999999999999999999999999999996 466532 134444 58899999
Q ss_pred ccCCC-----c-------hhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccc
Q psy6885 173 IPAAT-----G-------AAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGIL 240 (301)
Q Consensus 173 IP~~t-----G-------~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil 240 (301)
||+++ | ..++++|++|+++++++++|+|||+++||++++++++++++++|||+++|++++ +--++
T Consensus 200 ip~~~~~~~~gh~~Ee~k~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~---~V~v~ 276 (340)
T 2hjs_A 200 LAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATK---GIEWV 276 (340)
T ss_dssp BSSSSCBCTTSCBHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHST---TEEEC
T ss_pred eccccCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHhcCC---CcEEe
Confidence 99987 7 445568899999999999999999999999999999999999999999999643 22233
Q ss_pred cccccceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecC-CchhhhhHHHHHHHHhh
Q psy6885 241 GYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDN-EYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 241 ~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDN-E~gy~~r~~d~~~~~~~ 299 (301)
...+-|-...+..|..+-.|--.+... ..++.+.+.++.|| .+|.|-.-+-.+..|..
T Consensus 277 ~~~~~p~~~~~v~g~~~~~vgr~r~~~-~~~~~l~~~~~~DNl~kGAA~~avq~~~l~~~ 335 (340)
T 2hjs_A 277 GEGDYPTVVGDALGQDETYVGRVRAGQ-ADPCQVNLWIVSDNVRKGAALNAVLLGELLIK 335 (340)
T ss_dssp CTTCCCCCCCCCTTSSCEEEEEEEECS-SCTTEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHcCCCCEEEEEEEEecC-CCCCEEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 211122211144554443332211111 13567899999999 99999999988887754
No 27
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=100.00 E-value=4.3e-41 Score=323.89 Aligned_cols=207 Identities=18% Similarity=0.145 Sum_probs=176.2
Q ss_pred ccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 11 ARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 11 ~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
..|+||| ||+ ++. .++|+.+.+....+++. |. ++|+||+|+|.+.+++.++.|+++|+|++|||+|
T Consensus 33 ~~~~~~s-~G~---~v~------~~~g~~i~~~~~~~~~~--~~--~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~s 98 (367)
T 1t4b_A 33 VFFSTSQ-LGQ---AAP------SFGGTTGTLQDAFDLEA--LK--ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAA 98 (367)
T ss_dssp EEEESSS-TTS---BCC------GGGTCCCBCEETTCHHH--HH--TCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred EEEEeCC-CCC---Ccc------ccCCCceEEEecCChHH--hc--CCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCC
Confidence 3567786 887 221 24566777765554443 75 8999999999999999999999999999999999
Q ss_pred CC-----CCCeEEecCCcCCCCCC--c--cEEecCCcchhhccchhhhhhhccCeeEEEEeeeecccccccc--------
Q psy6885 91 SA-----DAPMFVCGVNLDAYDPS--F--KVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT-------- 153 (301)
Q Consensus 91 s~-----d~plvV~gVN~~~~~~~--~--~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~-------- 153 (301)
++ |+|++|||||++.|+.. + ++|+||||||+|++|+|+||+++++|+++.|||||++||+|+-
T Consensus 99 s~~R~~~~~~~~vpevN~~~i~~~~~~g~~~Ianp~Cttt~~~~al~pL~~~~~I~~~~vtt~~a~SGaG~~~~~el~~~ 178 (367)
T 1t4b_A 99 SSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQ 178 (367)
T ss_dssp STTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHH
T ss_pred hhhccCCCCcEEeCCcCHHHHhhhhhcCCCEEEeCCHHHHHHHHHHHHHHHcCCCcEEEEEEEeccccccccchHHHHHH
Confidence 86 68999999999998752 2 6999999999999999999999999999999999999998542
Q ss_pred -----------ccCCCCC---Cccc----------------ccccccccccCCCc------------hhhhhhhhccc-c
Q psy6885 154 -----------VDGPSGK---LWRD----------------GRGAAQNIIPAATG------------AAKAVGKVIPA-L 190 (301)
Q Consensus 154 -----------lD~~~~~---d~r~----------------~r~~a~NIIP~~tG------------~ak~~~kvlpe-l 190 (301)
+|+|+ + |+|| ++++++|+||++++ ..++++|++|+ .
T Consensus 179 ~~~l~~~~~~~~~~~~-~~ild~~r~~~~~~~~~~~~~~~f~~~~a~NiiP~~~~~~~~~~t~EE~k~~~e~~kil~~~~ 257 (367)
T 1t4b_A 179 MGHLYGHVADELATPS-SAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSS 257 (367)
T ss_dssp HHHHHHHTHHHHTCTT-CCHHHHHHHHHHHHHHTCSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSS
T ss_pred Hhhhhccccccccccc-cchhhhhhccccccccccCcccccchhhhCceEEEecCccccCccHHHHHHHHHHHHHhCcCC
Confidence 34453 3 5555 68999999999987 67788899976 5
Q ss_pred CCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhh
Q psy6885 191 NGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAA 232 (301)
Q Consensus 191 ~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~ 232 (301)
+.+++++|+|||+++||++++++++++++++|||+++|++++
T Consensus 258 ~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~eei~~~l~~~~ 299 (367)
T 1t4b_A 258 VIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHN 299 (367)
T ss_dssp CCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHHHHHHHC
T ss_pred CceEEEEEEEcCccceEEEEEEEEECCCCCHHHHHHHHHhcC
Confidence 669999999999999999999999999999999999999984
No 28
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=1.9e-40 Score=315.90 Aligned_cols=194 Identities=20% Similarity=0.189 Sum_probs=167.0
Q ss_pred cceec--cCCCCCCceE-EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 12 RFSSD--EDDLKSPSTF-FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 12 ~~~~d--~~~g~~~~~v-~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
+++|| ++||+|++++ ..++..+.+++. ++++.| ++|+||+|||.+.+++.++.|+++|+ +||++
T Consensus 42 ~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~---------~~~~~~---~vDvV~~atp~~~~~~~a~~~l~aG~-~VId~ 108 (337)
T 1cf2_P 42 MALKKGYDLYVAIPERVKLFEKAGIEVAGT---------VDDMLD---EADIVIDCTPEGIGAKNLKMYKEKGI-KAIFQ 108 (337)
T ss_dssp HHHHTTCCEEESSGGGHHHHHHTTCCCCEE---------HHHHHH---TCSEEEECCSTTHHHHHHHHHHHHTC-CEEEC
T ss_pred hcCCcchhhccccccceeeecCCceEEcCC---------HHHHhc---CCCEEEECCCchhhHHHHHHHHHcCC-EEEEe
Confidence 46677 8999999987 444556666542 111212 79999999999999999999999996 47777
Q ss_pred CCCC-CC--CeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccc
Q psy6885 89 APSA-DA--PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDG 165 (301)
Q Consensus 89 aps~-d~--plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~ 165 (301)
+|.+ |+ |++|||||++.++. .+|||||||+|+||+|+|+||+++|||+++.|||||++|+ + .+++
T Consensus 109 sp~~~d~~~~~~V~gvN~e~~~~-~~iIanp~C~tt~l~~~l~pL~~~~gI~~~~vtt~~a~s~-------p----~~~~ 176 (337)
T 1cf2_P 109 GGEKHEDIGLSFNSLSNYEESYG-KDYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGAD-------P----AQVS 176 (337)
T ss_dssp TTSCHHHHSCEECHHHHGGGGTT-CSEEEECCHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSC-------T----TCTT
T ss_pred cCCCCccCCCeEEeeeCHHHhcC-CCEEEcCCcHHHHHHHHHHHHHHhcCcceeEEEEEEEeec-------C----Cccc
Confidence 7765 44 99999999999985 6899999999999999999999999999999999999987 2 1445
Q ss_pred cccccccccC----CCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhc
Q psy6885 166 RGAAQNIIPA----ATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAE 233 (301)
Q Consensus 166 r~~a~NIIP~----~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~ 233 (301)
|++++||+|+ .++.+++++|+| +| +++++|+||||++||++++++++++++++||++++|++++.
T Consensus 177 ~~~~~NiiP~~i~~~~~~~~ei~kil-~l--~v~~t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~~~ 245 (337)
T 1cf2_P 177 KGPINAIIPNPPKLPSHHGPDVKTVL-DI--NIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPR 245 (337)
T ss_dssp CCCSSCCEESSSSSSCTHHHHHHTTS-CC--CEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTT
T ss_pred cchhcCEEeccCCCCCcchHHHHhhh-ee--EEEEEEEEcCccCeEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 6899999999 678889999999 77 69999999999999999999999999999999999999864
No 29
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=4.1e-37 Score=293.27 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=145.9
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCCC--CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhcc
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD--APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNF 134 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~d--~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~f 134 (301)
++|+||+|||.+.+++.++.|+++|+|+|++|++..+ .++||+|||++.+.. .++|+|||||||||+|+||+|+++|
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~~-~~iIsnpsCtt~~l~~~lk~L~~~~ 155 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALG-KKYIRVVSCNTTALLRTICTVNKVS 155 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHTT-CSEEEECCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHcC-CCCcccCCcHHHHHHHHHHHHHHhC
Confidence 6999999999999999999999999998888888654 479999999766543 3599999999999999999999999
Q ss_pred CeeEEEEeeeeccccccccccCCCCCCcccccccccccccC----CCchhhhhhhhccccCCceeEEEEeeeeeeeeEeE
Q psy6885 135 EIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPA----ATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210 (301)
Q Consensus 135 gI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~----~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~d 210 (301)
||+++.|||+|+++. + +++ .|++..||+|+ .+|+++++.|++|+| +++++|+||||++||+++
T Consensus 156 gI~~~~~tt~~~~~~-------~-~~~---~~~~~~niip~~~~i~t~~a~ev~~vlp~l--~l~~~a~rVPv~~gh~~~ 222 (340)
T 1b7g_O 156 KVEKVRATIVRRAAD-------Q-KEV---KKGPINSLVPDPATVPSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHF 222 (340)
T ss_dssp CEEEEEEEEEEESSC-------T-TCC---SCCCSSCCEESSSSSSCTHHHHHHTTSTTC--EEEEEEEEESCSSCEEEE
T ss_pred CeEEEEEEEEeccCC-------c-ccc---hHHHHcCCCCCCcCCCCCchhHHHHhCCCC--cEEEEEEEeccCCeEEEE
Confidence 999999999998753 3 233 45788999988 689999999999998 599999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHHHhhc
Q psy6885 211 LTVRLGKDATYDEIKAKVKAAAE 233 (301)
Q Consensus 211 l~~~~~k~~~~eei~~~l~~a~~ 233 (301)
+++++++++++|||+++|+++++
T Consensus 223 l~v~l~~~~t~eei~~~l~~a~~ 245 (340)
T 1b7g_O 223 INITLKDKVEKKDILSVLENTPR 245 (340)
T ss_dssp EEEEESSCCCHHHHHHHHHTCTT
T ss_pred EEEEECCCCCHHHHHHHHHcCCC
Confidence 99999999999999999998874
No 30
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=2.7e-36 Score=286.50 Aligned_cols=193 Identities=22% Similarity=0.174 Sum_probs=166.3
Q ss_pred cceec--cCCCCCCceE-EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 12 RFSSD--EDDLKSPSTF-FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 12 ~~~~d--~~~g~~~~~v-~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
+++|| ++||+|++++ ..+++.+.+.+ +++++.| ++|+|++||+.+.+.+.+..|+++| |+||++
T Consensus 43 ~~~~~g~~~~~~~~~~v~~~~~~~~~v~~---------d~~~l~~---~vDvV~~aTp~~~h~~~a~~~l~aG-k~Vi~s 109 (334)
T 2czc_A 43 RAKELGIPVYAASEEFIPRFEKEGFEVAG---------TLNDLLE---KVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQ 109 (334)
T ss_dssp HHHHTTCCEEESSGGGHHHHHHHTCCCSC---------BHHHHHT---TCSEEEECCSTTHHHHHHHHHHHHT-CEEEEC
T ss_pred HHHhcCccccccccccceeccCCceEEcC---------cHHHhcc---CCCEEEECCCccccHHHHHHHHHcC-CceEee
Confidence 35677 8999999987 33333443433 2223323 7999999999999999999999999 578899
Q ss_pred CCCC-C-C-CeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccc
Q psy6885 89 APSA-D-A-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDG 165 (301)
Q Consensus 89 aps~-d-~-plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~ 165 (301)
+|.+ | + |++|||||++.|+. .+||+||||+|+||+|++|+|++. |+++.|+|+|++|+. ||++
T Consensus 110 ap~~~d~~~~~~v~~vn~~~~~~-~~ii~~~~C~t~~l~P~~~~l~~~--I~~g~i~ti~a~s~~-----------~~~~ 175 (334)
T 2czc_A 110 GGEKADVAEVSFVAQANYEAALG-KNYVRVVSCNTTGLVRTLSAIREY--ADYVYAVMIRRAADP-----------NDTK 175 (334)
T ss_dssp TTSCGGGSSEEECHHHHGGGGTT-CSEEEECCHHHHHHHHHHHHHGGG--EEEEEEEEEEESSCT-----------TCCS
T ss_pred cccccccccceEEeccCHHHHhh-CCcEEecCcHHHHHHHHHHHHHHH--hccccEEEEEEecCc-----------cccc
Confidence 8875 4 4 59999999999875 689999999999999999999997 999999999999985 3567
Q ss_pred cccccccccC---CCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC
Q psy6885 166 RGAAQNIIPA---ATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG 234 (301)
Q Consensus 166 r~~a~NIIP~---~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~ 234 (301)
|++++||+|+ .+|+++++++++| |+ ++++|+||||++||++++++++++++++||++++|+++++.
T Consensus 176 r~~~~niiP~i~~~~g~~~~i~~~l~-l~--l~~~~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~ 244 (334)
T 2czc_A 176 RGPINAIKPTVEVPSHHGPDVQTVIP-IN--IETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRV 244 (334)
T ss_dssp CCCSSCCEECCSSSCTHHHHHTTTSC-CC--EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTTE
T ss_pred cChhhcEEeccCCCCchhhhhheEEE-EE--EEEEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHhccCC
Confidence 8999999999 8999999999999 74 99999999999999999999999999999999999998864
No 31
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Probab=100.00 E-value=4.6e-36 Score=287.96 Aligned_cols=256 Identities=10% Similarity=0.037 Sum_probs=191.8
Q ss_pred CCccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 9 PPARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 9 ~~~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
..+-++||++||+|.+.+ . . .+.+ ++ ++ .|. ++|+||+|+|.+.+++.++.| ++|+ +||+
T Consensus 51 ~~~g~~~~~~~~~~~~~v-~--~-------dl~~-~~---~~-~~~--~vDvVf~atp~~~s~~~a~~~-~aG~--~VId 110 (359)
T 1xyg_A 51 RKAGQSMESVFPHLRAQK-L--P-------TLVS-VK---DA-DFS--TVDAVFCCLPHGTTQEIIKEL-PTAL--KIVD 110 (359)
T ss_dssp TTTTSCHHHHCGGGTTSC-C--C-------CCBC-GG---GC-CGG--GCSEEEECCCTTTHHHHHHTS-CTTC--EEEE
T ss_pred hhcCCCHHHhCchhcCcc-c--c-------ccee-cc---hh-Hhc--CCCEEEEcCCchhHHHHHHHH-hCCC--EEEE
Confidence 345589999999999875 1 1 1222 11 22 575 899999999999999999999 9999 5676
Q ss_pred CCCC---C---------------------CCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCee--EEEEe
Q psy6885 89 APSA---D---------------------APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIV--EGLMT 142 (301)
Q Consensus 89 aps~---d---------------------~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~--~~~~T 142 (301)
++++ + .++.|||+|++.++. .+|||||||+|+|++|+|+||+++|+|+ ++.||
T Consensus 111 ~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~~-~~iIanpgC~tt~~~~~l~pL~~~~~i~~~~i~v~ 189 (359)
T 1xyg_A 111 LSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKK-ARLVANPGCYPTTIQLPLVPLLKANLIKHENIIID 189 (359)
T ss_dssp CSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCSSSCEEE
T ss_pred CCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhcc-CCEEECCCcHHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 6653 1 334455559999985 6899999999999999999999999999 99999
Q ss_pred eeecccccccc-ccCCCCCCcccccccccccccCCCchhhhhhhhccccC----------CceeEEEEeeeeeeeeEeEE
Q psy6885 143 TVHATTATQKT-VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALN----------GKLTGMAFRVPVANVSVVDL 211 (301)
Q Consensus 143 T~ha~s~~q~~-lD~~~~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~----------gkv~~~~vRVPv~~gs~~dl 211 (301)
|+|++||+|+. .|+++ .+ .++.|++|+.+|. .+.+||+. .+++++|+|||+++||++++
T Consensus 190 t~~~~SGaG~~~~~~~~-~~-----~~~~ni~py~~~~----h~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~~G~~~~i 259 (359)
T 1xyg_A 190 AKSGVSGAGRGAKEANL-YS-----EIAEGISSYGVTR----HRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTI 259 (359)
T ss_dssp EEEEGGGGCSCCCGGGB-HH-----HHTTCCEECSCSC----CTHHHHHHHHHHHHHTSCCCCEEECEEESSSSCEEEEE
T ss_pred EEEEccccCcccchhhh-hH-----HHhcCeecccccc----cccHHHHHHHHHHhcCCCCCEEEEEEEecccceEEEEE
Confidence 99999999984 66542 22 3678999999874 33444443 38999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHhhcC-CCCccccccccceeeecCCCCccceEeeCCCCeeeeCCeEEEEEEecCC-chhhhh
Q psy6885 212 TVRLGKDATYDEIKAKVKAAAEG-PLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNE-YGYSNR 289 (301)
Q Consensus 212 ~~~~~k~~~~eei~~~l~~a~~~-~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE-~gy~~r 289 (301)
+++++++++.|||+++|+++.++ ++--++...+-|-. .+..|..+-.|- .... ..++.+.++++.||- +|.|-+
T Consensus 260 ~~~l~~~~t~eei~~~~~~~y~~~~~V~v~~~~~~p~~-~~v~g~n~~~ig-~~~d--~~~~~l~~~~~~DNl~kGAAg~ 335 (359)
T 1xyg_A 260 YVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRT-HNVRGSNYCHMS-VFPD--RIPGRAIIISVIDNLVKGASGQ 335 (359)
T ss_dssp EEEBCTTCCHHHHHHHHHHHHTTCSSEEECCTTCCCBG-GGTTTSSCEEEE-EEEC--SSTTEEEEEEEECTTTTTTHHH
T ss_pred EEEeCCCCCHHHHHHHHHHhhCCCCCEEEcCCCCCCCH-HHhcCCCeEEEE-EEEe--CCCCEEEEEEEehhhhHhHHHH
Confidence 99999999999999999997753 44334332222322 144454433331 1110 123678899999999 899999
Q ss_pred HHHHHHHHhh
Q psy6885 290 VVDLIKYIQT 299 (301)
Q Consensus 290 ~~d~~~~~~~ 299 (301)
-+-.|+.|..
T Consensus 336 Avq~~nl~~g 345 (359)
T 1xyg_A 336 ALQNLNIMLG 345 (359)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999888854
No 32
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-36 Score=287.20 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=167.0
Q ss_pred ceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC
Q psy6885 13 FSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA 92 (301)
Q Consensus 13 ~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~ 92 (301)
-+||++|+.+. ++.+.++++.+.+ ++.+++. |. ++|+||+|+|.+.+++.++.|+++|+ .|||++++
T Consensus 44 ~~~~~~~~~~~------~~~~~~~~~~~~~-~~~d~~~--~~--~vDvVf~atp~~~s~~~a~~~~~aG~--~VId~s~~ 110 (350)
T 2ep5_A 44 KKYKDAVKWIE------QGDIPEEVQDLPI-VSTNYED--HK--DVDVVLSALPNELAESIELELVKNGK--IVVSNASP 110 (350)
T ss_dssp SBHHHHCCCCS------SSSCCHHHHTCBE-ECSSGGG--GT--TCSEEEECCCHHHHHHHHHHHHHTTC--EEEECSST
T ss_pred CCHHHhcCccc------ccccccCCceeEE-eeCCHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECCcc
Confidence 34788887664 2333344444555 3334433 63 89999999999999999999999999 47888875
Q ss_pred -----CCCeEEecCCcCCCCC----------CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCC
Q psy6885 93 -----DAPMFVCGVNLDAYDP----------SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGP 157 (301)
Q Consensus 93 -----d~plvV~gVN~~~~~~----------~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~ 157 (301)
++|++|||||++.|.. ..+|||||||+|+|++|+|+||+++|||+++.|||+|++||+|+. +.
T Consensus 111 ~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~tt~~~l~l~pL~~~~gi~~i~v~t~~~~SGaG~~--~~ 188 (350)
T 2ep5_A 111 FRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGYN--GI 188 (350)
T ss_dssp TTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSSEEEECCCHHHHHHHHHHGGGHHHHHTSEEEEEEEECGGGGCSS--SS
T ss_pred ccCCCCCCeeCCccCHHHhcChHhhhhhcccCceEEEcCchHHHHHHHHHHHHHHhcCCcEEEEEEEEecCcCCCC--CC
Confidence 6899999999998873 235999999999999999999999999999999999999999975 22
Q ss_pred CCCCcccccccccccccCCCch-hhhh---hhhccccCC--------ceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHH
Q psy6885 158 SGKLWRDGRGAAQNIIPAATGA-AKAV---GKVIPALNG--------KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIK 225 (301)
Q Consensus 158 ~~~d~r~~r~~a~NIIP~~tG~-ak~~---~kvlpel~g--------kv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~ 225 (301)
..+.+++|++|+++|+ .|.+ .|+||+++| +++++|+|||+++||+++++++++++++.||++
T Consensus 189 ------~~~~~~~ni~py~~~~e~k~~~E~~~~l~~~~g~~~~~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~ 262 (350)
T 2ep5_A 189 ------SFMAIEGNIIPYIKGEEDKIAKELTKLNGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIK 262 (350)
T ss_dssp ------BHHHHTTCCBCCCTTHHHHHHHHHHHHTCEECSSSEECCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHH
T ss_pred ------CChHHhCCEEeccCCcchHHHHHHHHHHhhccccccccccccEEEEeEEecccceEEEEEEEEECCCCCHHHHH
Confidence 2467899999999985 6654 799999876 899999999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy6885 226 AKVKAAAE 233 (301)
Q Consensus 226 ~~l~~a~~ 233 (301)
++|+++.+
T Consensus 263 ~~~~~~~~ 270 (350)
T 2ep5_A 263 KTLKNFKS 270 (350)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhhc
Confidence 99998763
No 33
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}
Probab=100.00 E-value=2e-35 Score=285.19 Aligned_cols=257 Identities=15% Similarity=0.168 Sum_probs=183.6
Q ss_pred cCCceE-ECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-----CCCeEEecCC
Q psy6885 29 CKWPPV-VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-----DAPMFVCGVN 102 (301)
Q Consensus 29 ~~~~l~-i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~-----d~plvV~gVN 102 (301)
.|+++. ++|+.+.+....+++ .|. ++|+||+|+|.+.+++.++.|+++|+|++|||+|++ |+|++|||||
T Consensus 43 aG~~~~~~~~~~~~v~~~~~~~--~~~--~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN 118 (377)
T 3uw3_A 43 AGGKAPSFAKNETTLKDATSID--DLK--KCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVN 118 (377)
T ss_dssp TTSBCCTTCCSCCBCEETTCHH--HHH--TCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHH
T ss_pred cCCCHHHcCCCceEEEeCCChh--Hhc--CCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCC
Confidence 444443 566554452211222 243 899999999999999999999999999999999974 5799999999
Q ss_pred cCCCCCC--cc--EEecCCcchhhccchhhhhhhccCeeEEEEeeeecccccccc------------ccC-------C--
Q psy6885 103 LDAYDPS--FK--VISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT------------VDG-------P-- 157 (301)
Q Consensus 103 ~~~~~~~--~~--IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~------------lD~-------~-- 157 (301)
++.++.. ++ +||||||+|+|++|+|+||+++|+|+++.|||||++||+++- +++ |
T Consensus 119 ~~~i~~~~~~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~~ 198 (377)
T 3uw3_A 119 LNVIKDALVNGTKNFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPAS 198 (377)
T ss_dssp HHHHHHHHHTTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTTS
T ss_pred HHHHhhhhhcCCcEEEcCCHHHHHHHHHHHHHHHhCCCCEEEEeeeecccccchhhHHHHHHHHHHhhcccccccccccc
Confidence 9998652 33 599999999999999999999999999999999999997651 111 1
Q ss_pred ----------------CCCCcccccccccccccCCC-----chhhh-------hhhhcccc------CCceeEEEEeeee
Q psy6885 158 ----------------SGKLWRDGRGAAQNIIPAAT-----GAAKA-------VGKVIPAL------NGKLTGMAFRVPV 203 (301)
Q Consensus 158 ----------------~~~d~r~~r~~a~NIIP~~t-----G~ak~-------~~kvlpel------~gkv~~~~vRVPv 203 (301)
..+...+++++++|++|++. |+++| ++|++..+ ..++++||+|||+
T Consensus 199 ~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVPv 278 (377)
T 3uw3_A 199 AILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGA 278 (377)
T ss_dssp CHHHHHHHHHHHHHSTTSCCTTTSSCCTBSCBSCCSCBCSSSCBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCSB
T ss_pred ccccccccccccccccccccccccccccCceEEeecccccCCCCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEecc
Confidence 01223567889999999974 44444 55666654 5689999999999
Q ss_pred eeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccc-------ceeeecCCCCccceEeeCCCCeee---eCCe
Q psy6885 204 ANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTED-------EVVSSDFIGDTHSSIFDAQAGIPL---NGKF 273 (301)
Q Consensus 204 ~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~-------~~VS~D~~~~~~s~i~d~~~~~~~---~~~~ 273 (301)
++||+..++++++++++.+|++++|+++. |+ +--..++ |.. .+..|.-+-.| +- +.. +++.
T Consensus 279 ~rGh~~tv~v~~~~~~~~eei~~~l~~~~--p~--V~v~~~~~~~~~~~P~p-~~v~G~n~v~V---Gr-ir~d~~~~~~ 349 (377)
T 3uw3_A 279 MRCHSQALTIKLKKDVPLDEINGILASAN--DW--VKVVPNEREASMRDLSP-AKVTGTLSVPV---GR-LRKLAMGGEY 349 (377)
T ss_dssp SSEEEEEEEEEESSCCCHHHHHHHHHTSC--SS--EEECCSSHHHHHHHSSH-HHHTTSSCEEE---EE-EEECTTCTTE
T ss_pred cceEEEEEEEEeCCCCCHHHHHHHHHhCC--CC--EEEecCCcccccCCCCH-HHhcCCCcEEE---EE-EEECCCCCCE
Confidence 99999999999999999999999999872 22 2112221 100 12233222111 00 111 1345
Q ss_pred EEEEEEecC-CchhhhhHHHHHHHHh
Q psy6885 274 VKLISWYDN-EYGYSNRVVDLIKYIQ 298 (301)
Q Consensus 274 ~kl~~WyDN-E~gy~~r~~d~~~~~~ 298 (301)
+.+.+==|| -||=|-+.+-.|..|-
T Consensus 350 l~~~~v~DNL~KGAAgqAvqn~nl~~ 375 (377)
T 3uw3_A 350 LSAFTVGDQLLWGAAEPLRRMLRILL 375 (377)
T ss_dssp EEEEEEEETTCCCCCHHHHHHHHHHH
T ss_pred EEEEEEehhhhHhHHHHHHHHHHHHh
Confidence 566666788 4677777777777664
No 34
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Probab=100.00 E-value=3.6e-35 Score=282.74 Aligned_cols=258 Identities=16% Similarity=0.146 Sum_probs=183.7
Q ss_pred cCCceE-ECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-----CCCeEEecCC
Q psy6885 29 CKWPPV-VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-----DAPMFVCGVN 102 (301)
Q Consensus 29 ~~~~l~-i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~-----d~plvV~gVN 102 (301)
.|+++. ++|+.+.+....+++. |. ++|+||+|+|.+.++++++.|+++|+|++|||+|++ |+|++|||||
T Consensus 39 aG~~~~~~~~~~~~~~~~~~~~~--~~--~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN 114 (370)
T 3pzr_A 39 IGVPAPNFGKDAGMLHDAFDIES--LK--QLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVN 114 (370)
T ss_dssp TTSBCCCSSSCCCBCEETTCHHH--HT--TCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHH
T ss_pred cCcCHHHhCCCceEEEecCChhH--hc--cCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCC
Confidence 344443 5665555532222222 43 899999999999999999999999999999999974 5799999999
Q ss_pred cCCCCCC--c--cEEecCCcchhhccchhhhhhhccCeeEEEEeeeecccccccc-cc----------------------
Q psy6885 103 LDAYDPS--F--KVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT-VD---------------------- 155 (301)
Q Consensus 103 ~~~~~~~--~--~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~-lD---------------------- 155 (301)
++.++.. + ++||||||||+|++|+|+||+++|||+++.|||||++||+++- ++
T Consensus 115 ~~~i~~~~~~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~~ 194 (370)
T 3pzr_A 115 LKQILHGIHHGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPAS 194 (370)
T ss_dssp HHHHHHHHHTTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhhhhcCCcEEEcCChHHHHHHHHHHHHHHhCCCcEEEEEeEEeccccChhhHHHHHHHHHHhhcccccccccccc
Confidence 9998652 3 3599999999999999999999999999999999999998652 10
Q ss_pred --------------CCCCCCcccccccccccccCCC-----chhhh-------hhhhccc--cCCceeEEEEeeeeeeee
Q psy6885 156 --------------GPSGKLWRDGRGAAQNIIPAAT-----GAAKA-------VGKVIPA--LNGKLTGMAFRVPVANVS 207 (301)
Q Consensus 156 --------------~~~~~d~r~~r~~a~NIIP~~t-----G~ak~-------~~kvlpe--l~gkv~~~~vRVPv~~gs 207 (301)
+...+...+++++++|++|++. |+++| ++|++.. -..++++||+|||+++||
T Consensus 195 ~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rGh 274 (370)
T 3pzr_A 195 SILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCH 274 (370)
T ss_dssp CHHHHHHHHHHHHHSTTSCCTTTSSCCTTSEESCCSCBCTTSCBHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSEE
T ss_pred ccccccccccccccccccccccccccccCceeeeccccccCCCCHHHHHHHHHHHHHhCccCCCceEEEEeEEecccceE
Confidence 1001123567889999999974 44444 4566653 245899999999999999
Q ss_pred EeEEEEEecCCCCHHHHHHHHHHhhcCCCCcccccccc-------ceeeecCCCCccceEeeCCCCeeee---CCeEEEE
Q psy6885 208 VVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTED-------EVVSSDFIGDTHSSIFDAQAGIPLN---GKFVKLI 277 (301)
Q Consensus 208 ~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~-------~~VS~D~~~~~~s~i~d~~~~~~~~---~~~~kl~ 277 (301)
+..++++++++++.+|++++|+++. |+--++ .+. |.. .+..|.-+..| +- +..+ ++.+.++
T Consensus 275 ~~tv~v~~~~~~~~~ei~~~l~~~~--p~V~v~--~~~~~~~~~~P~p-~~v~G~n~v~V---Gr-ir~d~~~~~~l~~~ 345 (370)
T 3pzr_A 275 SQALTIKLKQNIPLDEIEEMIATHN--DWVKVI--PNERDITARELTP-AKVTGTLSVPV---GR-LRKMAMGDDFLNAF 345 (370)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHTSC--SSEEEC--CSCHHHHHHHSSH-HHHTTSCCEEE---EE-EEEETTEEEEEEEE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhCC--CCEEEe--cCCcccccCCCCH-HHhcCCccEEE---EE-EEECCCCCCEEEEE
Confidence 9999999999999999999999872 221122 111 110 12233222111 10 1111 2334455
Q ss_pred EEecC-CchhhhhHHHHHHHHhh
Q psy6885 278 SWYDN-EYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 278 ~WyDN-E~gy~~r~~d~~~~~~~ 299 (301)
+=-|| -||=|-+.+..|+.|..
T Consensus 346 ~v~DNL~KGAAgqAvQn~Nl~~~ 368 (370)
T 3pzr_A 346 TVGDQLLWGAAEPLRRTLRIILA 368 (370)
T ss_dssp EEEETTTTTTHHHHHHHHHHHHH
T ss_pred EEehhhhHhHHHHHHHHHHHHHh
Confidence 55788 46888888888877754
No 35
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=100.00 E-value=6.6e-34 Score=271.68 Aligned_cols=255 Identities=20% Similarity=0.256 Sum_probs=187.0
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gV 101 (301)
++.|+++.++|+.+.+. +.++ ..|. ++|+||+|+|.+.+++.++.|+++|+ +||++++ +|+|++||||
T Consensus 38 ~~aG~~~~~~~~~~~~~-~~~~--~~~~--~~Dvvf~a~~~~~s~~~a~~~~~~G~--~vID~Sa~~R~~~~~p~~vpev 110 (344)
T 3tz6_A 38 RSQGRKLAFRGQEIEVE-DAET--ADPS--GLDIALFSAGSAMSKVQAPRFAAAGV--TVIDNSSAWRKDPDVPLVVSEV 110 (344)
T ss_dssp TTSSCEEEETTEEEEEE-ETTT--SCCT--TCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTT
T ss_pred ccCCCceeecCCceEEE-eCCH--HHhc--cCCEEEECCChHHHHHHHHHHHhCCC--EEEECCCccccCCCccEEEccC
Confidence 35678888999888773 2333 3454 89999999999999999999999999 5666665 3689999999
Q ss_pred Cc-CCCCCC-ccEEecCCcchhhccchhhhhhhccCeeEEEEeeeecccccccc--------------------ccCCCC
Q psy6885 102 NL-DAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT--------------------VDGPSG 159 (301)
Q Consensus 102 N~-~~~~~~-~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~--------------------lD~~~~ 159 (301)
|+ +.++.. .+|||||+|+|+|++|+|+||+++|||+++.|||+|++||+++- +++...
T Consensus 111 N~~~~i~~~~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (344)
T 3tz6_A 111 NFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGAL 190 (344)
T ss_dssp SHHHHTTCCTTSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTSS
T ss_pred CCHHHhhhcCCCEEECCCcHHHHHHHHHHHHHHhCCCceEEEEeccCCCccChhhhHHHHHHHHhhhccccccccccccc
Confidence 99 988763 68999999999999999999999999999999999999998652 222110
Q ss_pred ---CCcccccccccccccCCC-----ch--hhhh-------hhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHH
Q psy6885 160 ---KLWRDGRGAAQNIIPAAT-----GA--AKAV-------GKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYD 222 (301)
Q Consensus 160 ---~d~r~~r~~a~NIIP~~t-----G~--ak~~-------~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~e 222 (301)
+...+++++++|++|++. |+ ++|+ +|++.....+++++|+|||+++||+..++++++++++.+
T Consensus 191 ~~~~~~~~~~~~aynv~p~i~~~~~~ghrHt~EE~k~~~e~~kilg~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~e 270 (344)
T 3tz6_A 191 EFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPE 270 (344)
T ss_dssp CCCCCSSSSSCCTTCCBCCCSCBCSSSSCCBHHHHHHHHHHHHHHTCTTCEEEEECCBCSCSSCEEEEEEEEESSCCCHH
T ss_pred cccccccccccccccccccccccccCCCcCCHHHHHHHHHHHHhcCCCCCceEEEEEEeceeceEEEEEEEEECCCCCHH
Confidence 123567789999999853 44 4443 356543345899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccccccceeeecCCCCccceEeeCCCCeeee-----CCeEEEEEEecCC-chhhhhHHHHHHH
Q psy6885 223 EIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN-----GKFVKLISWYDNE-YGYSNRVVDLIKY 296 (301)
Q Consensus 223 ei~~~l~~a~~~~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~-----~~~~kl~~WyDNE-~gy~~r~~d~~~~ 296 (301)
|++++|++++ +--++.|.. |. +..|..+-.|- + ...+ ++.+.+++=-||= +|=|-.-|-.|..
T Consensus 271 ei~~~l~~~p---~V~v~~~P~-p~---~v~gtn~~~Vg--r--ir~d~~~~~~~~l~~~~~~DNL~KGAAg~AVQ~anl 339 (344)
T 3tz6_A 271 RARELLDGAT---GVQLVDVPT-PL---AAAGVDESLVG--R--IRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAEL 339 (344)
T ss_dssp HHHHHHHHCT---TEEECSSCC-HH---HHTTCSSEEEE--E--EEECTTSGGGCEEEEEEEECTTTTTTHHHHHHHHHH
T ss_pred HHHHHHhcCC---CeEEECCCC-hH---HhCCCceEEEE--E--EEecCCCCCCCEEEEEEEEcchhHhHHHHHHHHHHH
Confidence 9999999543 222333221 11 22333222110 0 1111 2357777778994 6777777777776
Q ss_pred Hhh
Q psy6885 297 IQT 299 (301)
Q Consensus 297 ~~~ 299 (301)
|.+
T Consensus 340 l~~ 342 (344)
T 3tz6_A 340 LTA 342 (344)
T ss_dssp HTC
T ss_pred HHh
Confidence 643
No 36
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=100.00 E-value=4.3e-33 Score=267.42 Aligned_cols=232 Identities=14% Similarity=0.185 Sum_probs=176.1
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC---CCCCeEEecCCcCCCCC--C--------ccEEecCCcchhhc
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS---ADAPMFVCGVNLDAYDP--S--------FKVISNASCTTNCL 123 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps---~d~plvV~gVN~~~~~~--~--------~~IVsn~sCtT~~L 123 (301)
++|+||+|+|.+.+++.++.|+++|++.|.+|++. +++|++|||||++.++. . .+|||||+|+|+|+
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~ 158 (359)
T 4dpk_A 79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGA 158 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHH
Confidence 89999999999999999999999999666666664 36899999999999853 2 25999999999999
Q ss_pred cchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccccccccCCCch-hh---hhhhhccccCC-------
Q psy6885 124 APLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA-AK---AVGKVIPALNG------- 192 (301)
Q Consensus 124 ap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~-ak---~~~kvlpel~g------- 192 (301)
+++|+||+++|||+++.|+|+|++||+|+. +.+ .+.+++|++|+++|. .| |+.|+|+++++
T Consensus 159 ~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~--~~~------~~~~~~N~ipy~~~~e~k~~~Ei~kil~~l~g~~~~~~~ 230 (359)
T 4dpk_A 159 AIPLGAIFKDYKMDGAFITTIQSLSGAGYP--GIP------SLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKL 230 (359)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEECSGGGCSS--CSB------GGGTTTCCEECCHHHHHHHHHHHHHHHHTSCCSCCCSCG
T ss_pred HHHHHHHHHhcCCcEEEEEEEeccccCCCc--Ccc------ChHHhCCeEeecCcHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999875 221 246899999999876 44 57889998765
Q ss_pred ---ceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCC-CCccccccccceeee-----------cCCCC--
Q psy6885 193 ---KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGP-LAGILGYTEDEVVSS-----------DFIGD-- 255 (301)
Q Consensus 193 ---kv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~-lkgil~~~e~~~VS~-----------D~~~~-- 255 (301)
+++++|+|||+++||+++++++++++++.||++++|+++.+.+ ..++.+.+ +|+|-. +-..+
T Consensus 231 ~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p-~~fV~v~~~~~~P~~~~~~g~~~~ 309 (359)
T 4dpk_A 231 EDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAP-SKPIIVMNEDTRPQVYFDRWAGDI 309 (359)
T ss_dssp GGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCC-SCSEEECCSTTCCCHHHHTTCTTT
T ss_pred cCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCC-CccEEEcCCCCCCCHHHhhccCCC
Confidence 8999999999999999999999999999999999999986541 12222222 222211 10000
Q ss_pred -ccceEeeCCCCeeeeCCeEEEEEEecCC-chhhhhHHHHHHHHhh
Q psy6885 256 -THSSIFDAQAGIPLNGKFVKLISWYDNE-YGYSNRVVDLIKYIQT 299 (301)
Q Consensus 256 -~~s~i~d~~~~~~~~~~~~kl~~WyDNE-~gy~~r~~d~~~~~~~ 299 (301)
...+.+ ++. ...+++.+.+++=-||= +|=|-.-+-.++.|.+
T Consensus 310 ~~~~~~V-gr~-r~~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~ 353 (359)
T 4dpk_A 310 PGMSVVV-GRL-KQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVE 353 (359)
T ss_dssp TTCSEEE-EEE-EEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred cCCeEEE-EEE-EEcCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence 011111 000 00345667788889994 5766666666666643
No 37
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=100.00 E-value=4.3e-33 Score=267.42 Aligned_cols=232 Identities=13% Similarity=0.179 Sum_probs=176.3
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC---CCCCeEEecCCcCCCCC--C--------ccEEecCCcchhhc
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS---ADAPMFVCGVNLDAYDP--S--------FKVISNASCTTNCL 123 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps---~d~plvV~gVN~~~~~~--~--------~~IVsn~sCtT~~L 123 (301)
++|+||+|+|.+.+++.++.|+++|++.|.+|++. +++|++|||||++.++. . .+|||||+|+|+|+
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~ 158 (359)
T 4dpl_A 79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGA 158 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHH
Confidence 89999999999999999999999999666666664 36899999999999853 2 25999999999999
Q ss_pred cchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccccccccCCCch-hh---hhhhhccccCC-------
Q psy6885 124 APLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA-AK---AVGKVIPALNG------- 192 (301)
Q Consensus 124 ap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~-ak---~~~kvlpel~g------- 192 (301)
+++|+||+++|||+++.|+|+|++||+|+. +.+ .+.+++|++|+++|. .| |+.|+|+++++
T Consensus 159 ~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~--~~~------~~~~~~N~ipy~~~~e~k~~~Ei~kil~~l~g~~~~~~~ 230 (359)
T 4dpl_A 159 AIPLGAIFKDYKMDGAFITTIQSLSGAGYP--GIP------SLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKL 230 (359)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEBCGGGGCSS--CSB------HHHHTTCCEECCHHHHHHHHHHHHHHHTTSCCSSCCSCG
T ss_pred HHHHHHHHHhcCCcEEEEEEEeccccCCCc--Ccc------ChHHhCCeEeecCcHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999875 221 257899999999876 44 57889998766
Q ss_pred ---ceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCC-CCccccccccceeee-cC---------C-CC--
Q psy6885 193 ---KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGP-LAGILGYTEDEVVSS-DF---------I-GD-- 255 (301)
Q Consensus 193 ---kv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~-lkgil~~~e~~~VS~-D~---------~-~~-- 255 (301)
+++++|+|||+++||+++++++++++++.||++++|+++.+.+ ..++.+.++ |+|-. +- . .+
T Consensus 231 ~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~-~fV~v~~~~~~P~~~~~~g~~~~ 309 (359)
T 4dpl_A 231 EDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPS-KPIIVMNEDTRPQVYFDRWAGDI 309 (359)
T ss_dssp GGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCCS-CSEEEECSTTCCCHHHHTTCTTT
T ss_pred cCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCCC-ccEEEcCCCCCCCHHHhhccCCC
Confidence 8999999999999999999999999999999999999986541 122222222 22211 10 0 00
Q ss_pred -ccceEeeCCCCeeeeCCeEEEEEEecCC-chhhhhHHHHHHHHhh
Q psy6885 256 -THSSIFDAQAGIPLNGKFVKLISWYDNE-YGYSNRVVDLIKYIQT 299 (301)
Q Consensus 256 -~~s~i~d~~~~~~~~~~~~kl~~WyDNE-~gy~~r~~d~~~~~~~ 299 (301)
...+.+ ++. ...+++.+.+++=-||= +|=|-.-+-.++.|.+
T Consensus 310 ~~~~~~V-gr~-r~~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~ 353 (359)
T 4dpl_A 310 PGMSVVV-GRL-KQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVE 353 (359)
T ss_dssp TTCSEEE-EEE-EEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred cCCeEEE-EEE-EEcCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence 011111 000 00345667788889994 5766666666666643
No 38
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A
Probab=100.00 E-value=8.4e-34 Score=272.92 Aligned_cols=258 Identities=16% Similarity=0.179 Sum_probs=187.0
Q ss_pred EecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecC
Q psy6885 27 FSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGV 101 (301)
Q Consensus 27 ~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gV 101 (301)
+++|+.+.+.|+.+.+. +.+++ .|. ++|+||+|+|.+.+++.++.|+++|++ ||++++ +++|++||||
T Consensus 39 ~saG~~~~~~~~~~~~~-~~~~~--~~~--~~Dvvf~a~~~~~s~~~a~~~~~~G~~--vIDlSa~~R~~~~~p~~vpev 111 (366)
T 3pwk_A 39 RSAGKSLKFKDQDITIE-ETTET--AFE--GVDIALFSAGSSTSAKYAPYAVKAGVV--VVDNTSYFRQNPDVPLVVPEV 111 (366)
T ss_dssp TTTTCEEEETTEEEEEE-ECCTT--TTT--TCSEEEECSCHHHHHHHHHHHHHTTCE--EEECSSTTTTCTTSCBCCHHH
T ss_pred ccCCCcceecCCCceEe-eCCHH--Hhc--CCCEEEECCChHhHHHHHHHHHHCCCE--EEEcCCccccCCCceEEEccC
Confidence 45678888999887773 33333 344 899999999999999999999999994 555544 3689999999
Q ss_pred CcCCCCCCccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccc-ccc-----------C------CCCCC--
Q psy6885 102 NLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK-TVD-----------G------PSGKL-- 161 (301)
Q Consensus 102 N~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~-~lD-----------~------~~~~d-- 161 (301)
|++.++...+|||||+|+|+|++|+|+||+++|||+++.|||+|++||+++ .++ + ...+.
T Consensus 112 N~~~i~~~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~ 191 (366)
T 3pwk_A 112 NAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILP 191 (366)
T ss_dssp HGGGGTTCCSEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSS
T ss_pred CHHHHcCCCCeEECCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEeccccCcchhhHHHHHHHHHhcccccccccCcccCC
Confidence 999998657899999999999999999999999999999999999999865 221 1 00011
Q ss_pred ---cccccccccccccCC-----Cchhhhhhh-------hccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHH
Q psy6885 162 ---WRDGRGAAQNIIPAA-----TGAAKAVGK-------VIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKA 226 (301)
Q Consensus 162 ---~r~~r~~a~NIIP~~-----tG~ak~~~k-------vlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~ 226 (301)
-++-+++++|++|++ +|+++|+.| ++.....+++++|+|||+++||++.++++++++++.+|+++
T Consensus 192 ~~~~HrH~~ia~NviP~I~~~~~~g~t~EE~k~~~E~~kil~~~~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~ 271 (366)
T 3pwk_A 192 SGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKA 271 (366)
T ss_dssp CTTSSCCCCCTTCCBCCSSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHH
T ss_pred cccccccchhhccccceecccccCCCcHHHHHHHHHHHHHhcCCCCCeEEEEEEechhccEEEEEEEEECCCCCHHHHHH
Confidence 012278999999997 477777654 45555568999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccccccc---cceeeecCCCCccceEeeCCCCeee---eCCeEEEEEEecCC-chhhhhHHHHHHHHhh
Q psy6885 227 KVKAAAEGPLAGILGYTE---DEVVSSDFIGDTHSSIFDAQAGIPL---NGKFVKLISWYDNE-YGYSNRVVDLIKYIQT 299 (301)
Q Consensus 227 ~l~~a~~~~lkgil~~~e---~~~VS~D~~~~~~s~i~d~~~~~~~---~~~~~kl~~WyDNE-~gy~~r~~d~~~~~~~ 299 (301)
++++++ +--++...+ -|.. .+..|..+-.| +- ... .++.+.+++=-||= +|=|-+-|-.|..|-.
T Consensus 272 ~l~~~~---~V~v~~~~~~~~~P~~-~~v~gtn~~~V---gr-~r~d~~~~~~l~~~~~~DNL~KGAAg~AVQn~nlm~~ 343 (366)
T 3pwk_A 272 AIAAFP---GAVLEDDVAHQIYPQA-INAVGSRDTFV---GR-IRKDLDAEKGIHMWVVSDNLLKGAAWNSVQIAETLHE 343 (366)
T ss_dssp HHHHST---TEEECCBGGGTBCCCH-HHHTTCSSEEE---EE-EEECSSCTTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred HHHhCC---CcEEecCcccCCCCch-hHcCCCCEEEE---EE-EEecCCCCCEEEEEEEEccHHHhHHHHHHHHHHHHHH
Confidence 999873 111121110 1111 12233322211 00 011 23556777778995 5666666666666643
No 39
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4e-34 Score=273.51 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=162.5
Q ss_pred eeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-
Q psy6885 14 SSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA- 92 (301)
Q Consensus 14 ~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~- 92 (301)
++|++||.+..+ .+..+++.+.+ .+.++++ |.+.++|+||+|+|.+.+++.++.|+++|+ .|||+|++
T Consensus 49 ~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~--~~~~~~DvV~~atp~~~~~~~a~~~~~aG~--~VId~s~~~ 117 (354)
T 1ys4_A 49 KYKDACYWFQDR------DIPENIKDMVV-IPTDPKH--EEFEDVDIVFSALPSDLAKKFEPEFAKEGK--LIFSNASAY 117 (354)
T ss_dssp BHHHHSCCCCSS------CCCHHHHTCBC-EESCTTS--GGGTTCCEEEECCCHHHHHHHHHHHHHTTC--EEEECCSTT
T ss_pred cHHHhccccccc------ccccCceeeEE-EeCCHHH--HhcCCCCEEEECCCchHHHHHHHHHHHCCC--EEEECCchh
Confidence 466777765211 11122333334 2234544 644589999999999999999999999998 58998874
Q ss_pred ----CCCeEEecCCcCCCCC----------CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCC
Q psy6885 93 ----DAPMFVCGVNLDAYDP----------SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS 158 (301)
Q Consensus 93 ----d~plvV~gVN~~~~~~----------~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~ 158 (301)
+.|++|||||++.|+. ..+|||||+|+|+|++|+|+||+++|||+++.|+|+|++||+|+. +.
T Consensus 118 R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~tt~~~l~l~pL~~~~gi~~~~v~t~~~~SGaG~~--~~- 194 (354)
T 1ys4_A 118 RMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYN--GV- 194 (354)
T ss_dssp TTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSSEEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEBCSGGGCTT--TS-
T ss_pred cCCCCCCccCcccCHHHhcChhhhhhhcccCCeEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcCcCCcc--cc-
Confidence 5899999999998873 235999999999999999999999999999999999999999876 22
Q ss_pred CCCcccccccccccccCCCch-hh---hhhhhccccCC--------ceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHH
Q psy6885 159 GKLWRDGRGAAQNIIPAATGA-AK---AVGKVIPALNG--------KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKA 226 (301)
Q Consensus 159 ~~d~r~~r~~a~NIIP~~tG~-ak---~~~kvlpel~g--------kv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~ 226 (301)
. .+.+++|++|+++|. .| |+.++|+++.| +++++|+|||+++||+++++++++++++.|||++
T Consensus 195 --~---~~~~~~ni~py~~~~~~k~~~Ei~~~l~~~~g~~~~~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~ 269 (354)
T 1ys4_A 195 --P---SMAILDNLIPFIKNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKE 269 (354)
T ss_dssp --C---HHHHTTCCBSCCTTHHHHHHHHHHHHTSEEETTEEECCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHH
T ss_pred --c---chHHhCCEEeccCchhhHHHHHHHHHHhccccccccCCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHH
Confidence 1 357899999999885 43 45567777654 8999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy6885 227 KVKAAAE 233 (301)
Q Consensus 227 ~l~~a~~ 233 (301)
+|+++..
T Consensus 270 ~~~~~~~ 276 (354)
T 1ys4_A 270 VMDKFDP 276 (354)
T ss_dssp HHHHCCT
T ss_pred HHHHhhc
Confidence 9999874
No 40
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=99.97 E-value=1.6e-33 Score=268.95 Aligned_cols=252 Identities=10% Similarity=-0.018 Sum_probs=183.5
Q ss_pred CccceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecC
Q psy6885 10 PARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISA 89 (301)
Q Consensus 10 ~~~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsa 89 (301)
.+-.+|+++|+.|.|. +.+.+ .+++ +|. ++|+||+|+|.+.+++.+++|+++|++ ||+.
T Consensus 40 ~~g~~~~~~~~~~~g~------------~~~~~---~~~~--~~~--~vDvV~~a~g~~~s~~~a~~~~~aG~~--VId~ 98 (345)
T 2ozp_A 40 FAGEPVHFVHPNLRGR------------TNLKF---VPPE--KLE--PADILVLALPHGVFAREFDRYSALAPV--LVDL 98 (345)
T ss_dssp TTTSBGGGTCGGGTTT------------CCCBC---BCGG--GCC--CCSEEEECCCTTHHHHTHHHHHTTCSE--EEEC
T ss_pred hhCchhHHhCchhcCc------------ccccc---cchh--Hhc--CCCEEEEcCCcHHHHHHHHHHHHCCCE--EEEc
Confidence 3457899999988764 12233 1222 373 899999999999999999999999995 4544
Q ss_pred CCC-----------------------CCCeEEecCCcCCCCCCccEEecCCcchhhccchhhhhhhccCee--EEEEeee
Q psy6885 90 PSA-----------------------DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIV--EGLMTTV 144 (301)
Q Consensus 90 ps~-----------------------d~plvV~gVN~~~~~~~~~IVsn~sCtT~~Lap~lk~L~~~fgI~--~~~~TT~ 144 (301)
+++ +.|+.|||+|++.++. .+|||||||+|+|++|+|+||+++|+|+ +++|+|+
T Consensus 99 Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~~i~~-~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~i~v~t~ 177 (345)
T 2ozp_A 99 SADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYREALKG-ADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLL 177 (345)
T ss_dssp SSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCSSCEEEEEE
T ss_pred CccccCCChHHHHhhhccccchhhhccCcEeccccCHHHhhc-CCEEeCCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 432 2455666669999885 6899999999999999999999999999 9999999
Q ss_pred ecccccccc-ccCCCCCCcccccccccccccCCCchhhhhhhhccccC-----C-ceeEEEEeeeeeeeeEeEEEEEecC
Q psy6885 145 HATTATQKT-VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALN-----G-KLTGMAFRVPVANVSVVDLTVRLGK 217 (301)
Q Consensus 145 ha~s~~q~~-lD~~~~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~-----g-kv~~~~vRVPv~~gs~~dl~~~~~k 217 (301)
|++||+|+. +|+++ .+ .+..|++|+.+|. .+++||++ + +++++|+|||+++||++++++++++
T Consensus 178 ~~~SGaG~~~~~~~~-~~-----~~~~n~~py~~~~----h~~~pei~~~l~~~~~v~~~~~rvP~~~g~~~~i~~~l~~ 247 (345)
T 2ozp_A 178 ISTSAGGAEASPASH-HP-----ERAGSIRVYKPTG----HRHTAEVVENLPGRPEVHLTAIATDRVRGILMTAQCFVQD 247 (345)
T ss_dssp ECSGGGCSSCCGGGC-HH-----HHTTCCEEEECSC----CTHHHHHHHTSSSCCCEEEEEEECSCSSCEEEEEEEEBCT
T ss_pred EEccccCcccccccc-ch-----hhccccccCCCCC----ccChHhHHHHhCCCCCeEEEEEEeccccEEEEEEEEEeCC
Confidence 999999864 55543 22 3678999998874 56667765 5 8999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcC-CCCccccc--cc--cceeeecCCCCccceEeeCCCCeeee--CCeEEEEEEecCC-chhhhh
Q psy6885 218 DATYDEIKAKVKAAAEG-PLAGILGY--TE--DEVVSSDFIGDTHSSIFDAQAGIPLN--GKFVKLISWYDNE-YGYSNR 289 (301)
Q Consensus 218 ~~~~eei~~~l~~a~~~-~lkgil~~--~e--~~~VS~D~~~~~~s~i~d~~~~~~~~--~~~~kl~~WyDNE-~gy~~r 289 (301)
+++.|||+++|+++.++ ++--+++- .+ -|..- +..|..+-.| + ...+ ++.+.+++=-||= +|=|-+
T Consensus 248 ~~t~eei~~~~~~~y~~~~~v~v~~~~~~~~~~p~~~-~~~g~~~~~i---g--~~~d~~~~~~~~~~~~DNl~kGAAg~ 321 (345)
T 2ozp_A 248 GWSERDVWQAYREAYAGEPFIRLVKQKKGVHRYPDPR-FVQGTNYADI---G--FELEEDTGRLVVMTAIDNLVKGTAGH 321 (345)
T ss_dssp TCCHHHHHHHHHHHHTTCTTEEECCCSSSSCCSCCHH-HHTTSCCEEE---E--EEEETTTTEEEEEEEECTTTTTTHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEeCCCCcCCCCCHH-HhcCCceEEE---E--EEEeCCCCEEEEEEEeccHHHHHHHH
Confidence 99999999999998753 32222210 11 12111 2233222211 1 1122 2556676778995 577777
Q ss_pred HHHHHHHHhh
Q psy6885 290 VVDLIKYIQT 299 (301)
Q Consensus 290 ~~d~~~~~~~ 299 (301)
-|-.|+.|-.
T Consensus 322 Avq~~nl~~g 331 (345)
T 2ozp_A 322 ALQALNVRMG 331 (345)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 7777776643
No 41
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}
Probab=99.97 E-value=6.2e-31 Score=254.20 Aligned_cols=171 Identities=19% Similarity=0.267 Sum_probs=144.5
Q ss_pred CcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC-----CCCCeEEecCCcCCCC---------------CCcc
Q psy6885 52 PWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDAYD---------------PSFK 111 (301)
Q Consensus 52 ~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps-----~d~plvV~gVN~~~~~---------------~~~~ 111 (301)
.|. ++|+||+|+|.+.+++.++.++++|++ ||++++ +|+|++|++||++.|. ...+
T Consensus 90 ~~~--~~Dvvf~alp~~~s~~~~~~~~~~G~~--VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~~~~i~~~~ 165 (381)
T 3hsk_A 90 NFL--ECDVVFSGLDADVAGDIEKSFVEAGLA--VVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGF 165 (381)
T ss_dssp TGG--GCSEEEECCCHHHHHHHHHHHHHTTCE--EEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHHTTCCCCCE
T ss_pred hcc--cCCEEEECCChhHHHHHHHHHHhCCCE--EEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhcccccccCCc
Confidence 454 899999999999999999999999994 555544 3689999999999885 2356
Q ss_pred EEecCCcchhhccchhhhhhhccC-eeEEEEeeeeccccccccccCCCCCCcccccccccccccCCCch-h---hhhhhh
Q psy6885 112 VISNASCTTNCLAPLAKVIHDNFE-IVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA-A---KAVGKV 186 (301)
Q Consensus 112 IVsn~sCtT~~Lap~lk~L~~~fg-I~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~-a---k~~~kv 186 (301)
|||||+|+|+|++++|+||+++|| |+++.|+|+|++||+|+... . ..+.+++|++|++++. . .|+.|+
T Consensus 166 iIaNPgC~tt~~~laL~PL~~~~glI~~v~v~t~~gvSGAG~~~~----~---~~~~~~~N~~Py~~~~e~k~~~Ei~ki 238 (381)
T 3hsk_A 166 IICISNCSTAGLVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPG----V---SGMDILDNIVPYISGEEDKLEWETKKI 238 (381)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHCCEEEEEEEEEBCCCC----------C---CHHHHTTCCBCCCTTHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHHHhcCCceEEEEEEeeccCCCCccCC----c---chhhhhcChhhcccchHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999986211 1 1347899999999876 3 356788
Q ss_pred ccccCC-------------ceeEEEEeeeeeeeeEeEEEEEecC--CCCHHHHHHHHHHhhc
Q psy6885 187 IPALNG-------------KLTGMAFRVPVANVSVVDLTVRLGK--DATYDEIKAKVKAAAE 233 (301)
Q Consensus 187 lpel~g-------------kv~~~~vRVPv~~gs~~dl~~~~~k--~~~~eei~~~l~~a~~ 233 (301)
|+.+++ +++++|+|||+++||++++++++++ +++.||++++|+++..
T Consensus 239 L~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l~~~y~ 300 (381)
T 3hsk_A 239 LGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLREYEC 300 (381)
T ss_dssp TCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHHHHCBC
T ss_pred hhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 887665 8999999999999999999999999 9999999999999764
No 42
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=99.97 E-value=2.6e-31 Score=253.12 Aligned_cols=223 Identities=13% Similarity=0.104 Sum_probs=171.6
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC--CC--CC------------------eEEecCCcCCCCCCccEEe
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS--AD--AP------------------MFVCGVNLDAYDPSFKVIS 114 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps--~d--~p------------------lvV~gVN~~~~~~~~~IVs 114 (301)
++|+||+|+|.+.+++.++.|+++|++.|.+|++. +| +| ..+||+|++.++. .+|||
T Consensus 75 ~~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~~-~~iIa 153 (337)
T 3dr3_A 75 GVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKE-ANLIA 153 (337)
T ss_dssp TCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHHT-CSEEE
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHhCC-CCEEe
Confidence 79999999999999999999999999655555553 12 22 2467779999874 68999
Q ss_pred cCCcchhhccchhhhhhh--ccCeeEE-EEeeeeccccccc-cccCCCCCCcccccccccccccCCCchhhhhhhhcccc
Q psy6885 115 NASCTTNCLAPLAKVIHD--NFEIVEG-LMTTVHATTATQK-TVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPAL 190 (301)
Q Consensus 115 n~sCtT~~Lap~lk~L~~--~fgI~~~-~~TT~ha~s~~q~-~lD~~~~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel 190 (301)
||+|+|+|++++|+||++ .|+++++ .|+|+|++||+|+ .+|+.+ .+.| |++|+.++. .+.+||+
T Consensus 154 nPgC~tt~~~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG~~~~~~~~-~~~~-------n~~py~~~~----h~h~Pei 221 (337)
T 3dr3_A 154 VPGCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAISNS-FCEV-------SLQPYGVFT----HRHQPEI 221 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTTS-GGGC-------SEEECSTTT----CTHHHHH
T ss_pred cCChHHHHHHHHHHHHHHcCccCCCceEEEEEeeccccCCcccccccc-cccc-------ceEccCccc----ceechhH
Confidence 999999999999999999 6999999 9999999999974 555443 3332 999998775 4567777
Q ss_pred CC----ceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhc-CCCCccccccccceeeecCCCCccceEeeCCC
Q psy6885 191 NG----KLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAE-GPLAGILGYTEDEVVSSDFIGDTHSSIFDAQA 265 (301)
Q Consensus 191 ~g----kv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~-~~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~ 265 (301)
.. +++++|+|||+++||+++++++++++++.||++++|+++-+ .++--++.-.+ |.. .+..|..+-.|-
T Consensus 222 ~~~l~~~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l~~~Y~~~p~V~v~~~~~-P~~-~~v~gtn~~~ig---- 295 (337)
T 3dr3_A 222 ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKGV-PAL-KNVVGLPFCDIG---- 295 (337)
T ss_dssp HHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSSC-CCG-GGTTTSSCEEEE----
T ss_pred HhhhcCCEEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHHhCCCCCEEECCCCC-CCH-HHhCCCCcEEEE----
Confidence 65 89999999999999999999999999999999999998733 34443432211 322 244554433221
Q ss_pred CeeeeCCeEEEEEEecC-CchhhhhHHHHHHHHhh
Q psy6885 266 GIPLNGKFVKLISWYDN-EYGYSNRVVDLIKYIQT 299 (301)
Q Consensus 266 ~~~~~~~~~kl~~WyDN-E~gy~~r~~d~~~~~~~ 299 (301)
...+++.+.+++..|| -+|=|-+-+-.|..|-.
T Consensus 296 -~~~~~~~l~~~~~~DNL~KGAAgqAVQ~~nlm~g 329 (337)
T 3dr3_A 296 -FAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFG 329 (337)
T ss_dssp -EEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHT
T ss_pred -EEEeCCEEEEEEEechHHHHHHHHHHHHHHHHhC
Confidence 1222667888888999 67888888888887754
No 43
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A
Probab=99.95 E-value=2.4e-28 Score=233.96 Aligned_cols=232 Identities=14% Similarity=0.068 Sum_probs=171.2
Q ss_pred cccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC--C-C--------------CeEEecC--CcCCCCCCccEE
Q psy6885 53 WAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA--D-A--------------PMFVCGV--NLDAYDPSFKVI 113 (301)
Q Consensus 53 w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~--d-~--------------plvV~gV--N~~~~~~~~~IV 113 (301)
|. ++|+||+|+|.+.+++.++.+ ++|++.|.+|++.. + . |+.|||+ |++.++ ..+||
T Consensus 78 ~~--~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~-~~~iI 153 (352)
T 2nqt_A 78 LG--GHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLR-GTRRI 153 (352)
T ss_dssp HT--TCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHT-TCSEE
T ss_pred hc--CCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHh-cCCEE
Confidence 54 899999999999999999999 99986555666642 2 2 8999999 999998 46899
Q ss_pred ecCCcchhhccchhhhhhhccCee-EEEEeeeeccccc-cccccCCCCCCccccccccccccc-CCC--chhhhhhhhcc
Q psy6885 114 SNASCTTNCLAPLAKVIHDNFEIV-EGLMTTVHATTAT-QKTVDGPSGKLWRDGRGAAQNIIP-AAT--GAAKAVGKVIP 188 (301)
Q Consensus 114 sn~sCtT~~Lap~lk~L~~~fgI~-~~~~TT~ha~s~~-q~~lD~~~~~d~r~~r~~a~NIIP-~~t--G~ak~~~kvlp 188 (301)
|||+|+|+|++++|+||+++++|+ ++.|+|+|++||+ ++..++.+ .++++.+..++|++| +.. --.++++|++.
T Consensus 154 anPgC~tt~~~lal~PL~~~~~i~~~i~v~t~~g~SGaG~~~~~~~~-~~~~~~~~~ay~~~~~h~h~pEi~~e~~ki~~ 232 (352)
T 2nqt_A 154 AVPGCYPTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTDLL-GAEVIGSARAYNIAGVHRHTPEIAQGLRAVTD 232 (352)
T ss_dssp ECCCHHHHHHHHHHHHHHHTTCSCSEEEEEEEECGGGGCSSCCGGGS-HHHHTTCCEECSTTTTSTTHHHHHHHHHTTCS
T ss_pred EcCCHHHHHHHHHHHHHHHcCCCcceEEEEEEeccccCCcccccccc-HHHHhhhcccccCCCcceecHHHHHHHHHHhC
Confidence 999999999999999999999999 9999999999999 45566443 556777778999998 531 11244566665
Q ss_pred ccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC-CCCccccccccceeeecCCCCccceEeeCCCCe
Q psy6885 189 ALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG-PLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGI 267 (301)
Q Consensus 189 el~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~-~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~ 267 (301)
.+++++++|+|||+++||+++++++++++ .||++++++++-++ ++--++.-.+-|.. .+..|..+-.| + .
T Consensus 233 -~~~~v~ft~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~~~y~~~~~V~v~~~~~~p~~-~~v~g~n~~~i---g--~ 303 (352)
T 2nqt_A 233 -RDVSVSFTPVLIPASRGILATCTARTRSP--LSQLRAAYEKAYHAEPFIYLMPEGQLPRT-GAVIGSNAAHI---A--V 303 (352)
T ss_dssp -SCCEEEEEEEECSCSSCEEEEEEEECCSC--HHHHHHHHHHHHTTCTTEEECCTTCCCCG-GGTTTSSCEEE---E--E
T ss_pred -CCCCEEEEEEEEccccEEEEEEEEEECCC--HHHHHHHHHHhhCCCCCEEEeCCCCCcCh-HHhcCCcEEEE---E--E
Confidence 36789999999999999999999999988 99999999986432 33223221111211 14444333222 1 1
Q ss_pred ee--eCCeEEEEEEecCC-chhhhhHHHHHHHHh
Q psy6885 268 PL--NGKFVKLISWYDNE-YGYSNRVVDLIKYIQ 298 (301)
Q Consensus 268 ~~--~~~~~kl~~WyDNE-~gy~~r~~d~~~~~~ 298 (301)
.. .++.+.+++=-||= +|=|-+-+-.|+.|-
T Consensus 304 ~~d~~~~~l~~~~~~DNL~KGAAg~AVQ~~nl~~ 337 (352)
T 2nqt_A 304 AVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLAL 337 (352)
T ss_dssp EEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred EEeCCCCEEEEEEEEcchhHhHHHHHHHHHHHHh
Confidence 12 23556677778995 566666666666664
No 44
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=99.88 E-value=4.2e-23 Score=197.41 Aligned_cols=223 Identities=13% Similarity=0.106 Sum_probs=159.4
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC----C-C------------------CeEEecCCcCCCCCCccEE
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA----D-A------------------PMFVCGVNLDAYDPSFKVI 113 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~----d-~------------------plvV~gVN~~~~~~~~~IV 113 (301)
++|+||+|+|...+++.++.+ +|+ +|||++++ | . |..+||+|.+.+.. .+||
T Consensus 78 ~~Dvvf~alp~~~s~~~~~~~--~g~--~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e~i~~-a~iI 152 (351)
T 1vkn_A 78 NCDVLFTALPAGASYDLVREL--KGV--KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKN-AQVV 152 (351)
T ss_dssp HCSEEEECCSTTHHHHHHTTC--CSC--EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHTT-CSEE
T ss_pred CCCEEEECCCcHHHHHHHHHh--CCC--EEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHHHhcc-CCEE
Confidence 799999999999999999987 788 78998873 2 2 78899999999875 5899
Q ss_pred ecCCcchhhccchhhhhhhccCee--EEEEeeeecccccccc-ccCCCCCCcccccccccccccCCCchh-------hhh
Q psy6885 114 SNASCTTNCLAPLAKVIHDNFEIV--EGLMTTVHATTATQKT-VDGPSGKLWRDGRGAAQNIIPAATGAA-------KAV 183 (301)
Q Consensus 114 sn~sCtT~~Lap~lk~L~~~fgI~--~~~~TT~ha~s~~q~~-lD~~~~~d~r~~r~~a~NIIP~~tG~a-------k~~ 183 (301)
+||+|+|++++++|+||+++++|+ ++.++|+|++||+++- .++.+ ...+..|+.|+..+.. +++
T Consensus 153 ANPgC~~t~~~laL~PL~~~~~i~~~~iiv~t~sgvSGAG~~~~~~~~------~~e~~~n~~~y~~~~h~h~pEi~~el 226 (351)
T 1vkn_A 153 GNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYL------FSEVNESLRPYNVAKHRHVPEMEQEL 226 (351)
T ss_dssp ECCCHHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGB------HHHHTTCCEECSCSCCTHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHcCCCCCCEEEEEEEeeccccCcccccccc------hhHHhcccccCCccccccHHHHHHHH
Confidence 999999999999999999999999 9999999999999863 33221 1245567777765532 344
Q ss_pred hhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcC-CCCccccccccceeeecCCCCccceEee
Q psy6885 184 GKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEG-PLAGILGYTEDEVVSSDFIGDTHSSIFD 262 (301)
Q Consensus 184 ~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~-~lkgil~~~e~~~VS~D~~~~~~s~i~d 262 (301)
+|++.. ..+++.+|+|||+++||++.++++++ ++.+|++++++++-++ |+--++.-.+-|..- +..|..+-.|
T Consensus 227 ~~i~~~-~~~v~ftp~rvPv~rG~~~tv~v~l~--~~~eei~~~l~~~Y~~~pfV~v~~~~~~P~~~-~v~gtn~~~I-- 300 (351)
T 1vkn_A 227 GKISGK-KVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKNEPFVHVLPMGIYPSTK-WCYGSNHVFI-- 300 (351)
T ss_dssp HHHHTS-CCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTTCTTEEECCTTCCCCGG-GGTTSSCEEE--
T ss_pred HHhhCC-CCCEEEEEEEeccccEEEEEEEEEEc--CCHHHHHHHHHHhhCCCCCEEEeCCCCCcChH-HhcCCceEEE--
Confidence 555542 45899999999999999999999998 8999999999985432 332232211112111 2233322222
Q ss_pred CCCCeeee--CCeEEEEEEecCC-chhhhhHHHHHHHHhh
Q psy6885 263 AQAGIPLN--GKFVKLISWYDNE-YGYSNRVVDLIKYIQT 299 (301)
Q Consensus 263 ~~~~~~~~--~~~~kl~~WyDNE-~gy~~r~~d~~~~~~~ 299 (301)
+ ...+ ++.+.+++=-||= +|=|-+-|-.|+.|-.
T Consensus 301 -g--~~~d~~~~~l~~~s~~DNL~KGAAgqAVQn~nlm~G 337 (351)
T 1vkn_A 301 -G--MQMEERTNTLILMSAIDNLVKGASGQAVQNMNIMFG 337 (351)
T ss_dssp -E--EEEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHTT
T ss_pred -E--EEEcCCCCEEEEEEEcccHHHhHHHHHHHHHHHHhC
Confidence 1 1122 2445555558995 5666666666666643
No 45
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=97.08 E-value=0.00018 Score=67.23 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=96.3
Q ss_pred cccEEEEecCCcCCHHHHHHHHHC--CCCeEEec-CCCCCCCeEEecCCcCCCCC--CccEEecCCcchhhccchhhhhh
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAG--GAKKVIIS-APSADAPMFVCGVNLDAYDP--SFKVISNASCTTNCLAPLAKVIH 131 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~a--Gak~ViIs-aps~d~plvV~gVN~~~~~~--~~~IVsn~sCtT~~Lap~lk~L~ 131 (301)
++|+||+|||.....+.+..++++ |. .|++ .|..-.|..++++|.+.+.. ..++++++.|.+. |++..+.
T Consensus 71 ~iDvV~~atp~~~h~~~a~~al~a~~Gk--~Vi~ekp~~~g~~~~p~v~~~~~~~~~~~~lva~~g~~~i---pl~~a~~ 145 (312)
T 1nvm_B 71 DIDFVFDATSASAHVQNEALLRQAKPGI--RLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTCGGQATI---PMVAAVS 145 (312)
T ss_dssp GEEEEEECSCHHHHHHHHHHHHHHCTTC--EEEECSTTCSSCBCCHHHHTTTTTTCSEEECCCHHHHHHH---HHHHHHH
T ss_pred CCcEEEECCChHHHHHHHHHHHHhCCCC--EEEEcCcccccccccCccCHHHHHhccCCcEEEeCCcccc---hHHHHhh
Confidence 799999999999999999999999 86 4444 33323578888999888643 2468888888665 4445555
Q ss_pred hccCeeEE-EEeeeecccccc--cc-ccC-------------------------CCCCCcccccccccccccCCC--chh
Q psy6885 132 DNFEIVEG-LMTTVHATTATQ--KT-VDG-------------------------PSGKLWRDGRGAAQNIIPAAT--GAA 180 (301)
Q Consensus 132 ~~fgI~~~-~~TT~ha~s~~q--~~-lD~-------------------------~~~~d~r~~r~~a~NIIP~~t--G~a 180 (301)
+.+..... .+.++++.+... +. +|. |+ .....-|+.++|.+|..+ +..
T Consensus 146 ~~~~~~~~~iv~~i~sgs~G~~~~~~l~e~~~~~~~ai~~~gg~~~~k~il~~~p~-~~p~~~~~tv~~~~~~~~~~~~~ 224 (312)
T 1nvm_B 146 RVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPA-EPPLIMRDTVYVLSAAADQAAVA 224 (312)
T ss_dssp TTSCEEEEEEEEEEEGGGSCHHHHTCHHHHHHHHHHHHHHTTCCSSEEEEEEEECC-SSCCCEEEEEEEEESSCCHHHHH
T ss_pred hhccchhHhHhhhhhccccCCCcccchhhHHHHHHHHHHHhhhccCCCcEEEEecC-CCCcccceeEEEEeCCCCHHHHH
Confidence 55554322 567787766311 10 010 11 111124668888888322 222
Q ss_pred -------hhhhhhccccCCceeEE--------EEeeeee---eeeEeEEEEEecCCC
Q psy6885 181 -------KAVGKVIPALNGKLTGM--------AFRVPVA---NVSVVDLTVRLGKDA 219 (301)
Q Consensus 181 -------k~~~kvlpel~gkv~~~--------~vRVPv~---~gs~~dl~~~~~k~~ 219 (301)
.+++|++|....+..-. .+++|-+ .+..+.+.++++-.-
T Consensus 225 ~~~~~m~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (312)
T 1nvm_B 225 ASVAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAA 281 (312)
T ss_dssp HHHHHHHHHHHTTCTTEEESSCCEEEEECTTSCEEETTTEEECEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCcCCCceEEeccCCCcccccCccccCCCEEEEEEEEecCc
Confidence 44566777654443321 2456644 388888888888643
No 46
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=60.52 E-value=5.4 Score=29.52 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=27.7
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISA 89 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsa 89 (301)
++|+||.|+|.......+...++.|.+++.++.
T Consensus 69 ~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 69 GFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp TCSEEEECSCGGGHHHHHHHHHHTTCEEECCCS
T ss_pred CCCEEEECCCchhhHHHHHHHHHhCCCEEEecC
Confidence 789999999988888888888899997666553
No 47
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=45.32 E-value=9.3 Score=34.33 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 46 RDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 46 ~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
.|.+.+-. ..|+|+||++...-++++.+.|++|...|+.|
T Consensus 52 ~d~d~lla---~pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S 91 (253)
T 1j5p_A 52 LDEFQVPS---DVSTVVECASPEAVKEYSLQILKNPVNYIIIS 91 (253)
T ss_dssp CSSCCCCT---TCCEEEECSCHHHHHHHHHHHTTSSSEEEECC
T ss_pred CCHHHHhh---CCCEEEECCCHHHHHHHHHHHHHCCCCEEEcC
Confidence 45666652 68999999999887888999999998544443
No 48
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=43.13 E-value=17 Score=35.24 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=28.3
Q ss_pred cccccEEEEecCC-cCCHHHHHHHHHCCCCeEEecCC
Q psy6885 55 KSGAEYVVESTGV-FTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 55 ~~gvdiv~e~tG~-f~s~e~a~~hl~aGak~ViIsap 90 (301)
+..+|+|++||+. ....+.+..++++|. .|+..+|
T Consensus 76 d~diDvVve~tp~~~~h~~~~~~AL~aGK-hVvtenk 111 (444)
T 3mtj_A 76 DPEIDIVVELIGGLEPARELVMQAIANGK-HVVTANK 111 (444)
T ss_dssp CTTCCEEEECCCSSTTHHHHHHHHHHTTC-EEEECCH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHcCC-EEEECCc
Confidence 3478999999996 778899999999995 5666566
No 49
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=42.40 E-value=3.4 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=15.1
Q ss_pred CCCeeeeCCeEEEEEEecCCch
Q psy6885 264 QAGIPLNGKFVKLISWYDNEYG 285 (301)
Q Consensus 264 ~~~~~~~~~~~kl~~WyDNE~g 285 (301)
+++..+.+.--|+.--|||||-
T Consensus 12 gsttevedskpk~sihfdnewp 33 (36)
T 1o9a_B 12 GSTTEVEDSKPKLSIHFDNEWP 33 (36)
T ss_dssp -CCBCCCCSCCCCBCCCCCCCS
T ss_pred CCceeeecCCcceEEeccCcCC
Confidence 3445566666778888999993
No 50
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=35.49 E-value=25 Score=32.51 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.6
Q ss_pred cccEEEEecCCc-CCHHHHHHHHHCCCCeEEe
Q psy6885 57 GAEYVVESTGVF-TTIEKASAHLAGGAKKVII 87 (301)
Q Consensus 57 gvdiv~e~tG~f-~s~e~a~~hl~aGak~ViI 87 (301)
.+|+|++|||.. ...+.+.+++++|. .||.
T Consensus 66 ~iDvVve~t~~~~~a~~~~~~AL~aGK-hVVt 96 (332)
T 2ejw_A 66 EADLVVEAMGGVEAPLRLVLPALEAGI-PLIT 96 (332)
T ss_dssp TCSEEEECCCCSHHHHHHHHHHHHTTC-CEEE
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCC-eEEE
Confidence 689999999976 45678888999995 4444
No 51
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=32.92 E-value=64 Score=25.20 Aligned_cols=41 Identities=27% Similarity=0.220 Sum_probs=30.0
Q ss_pred eeeeEeEEEEEecCCCCHHHHHH-HHHHhhcCCCCccccccccc
Q psy6885 204 ANVSVVDLTVRLGKDATYDEIKA-KVKAAAEGPLAGILGYTEDE 246 (301)
Q Consensus 204 ~~gs~~dl~~~~~k~~~~eei~~-~l~~a~~~~lkgil~~~e~~ 246 (301)
|||-. +.+++.+.++..+|++ +|++|.+-||-+.|.=..+-
T Consensus 27 PnGi~--i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y 68 (108)
T 2v1y_A 27 PNGMI--VTLECLREATLITIKHELFKEARKYPLHQLLQDESSY 68 (108)
T ss_dssp TTSCE--EEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGC
T ss_pred CcEEE--EEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccce
Confidence 56644 4555677899999988 88898888888877644443
No 52
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=29.66 E-value=38 Score=30.64 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=28.7
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps 91 (301)
++|+|++||......+.+..++++|. .||++.|.
T Consensus 58 ~~DvViiatp~~~h~~~~~~al~aG~-~Vv~ekp~ 91 (320)
T 1f06_A 58 DVDVLFLCMGSATDIPEQAPKFAQFA-CTVDTYDN 91 (320)
T ss_dssp TCSEEEECSCTTTHHHHHHHHHTTTS-EEECCCCC
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCC-EEEECCCC
Confidence 79999999999988899999999985 57776663
No 53
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=28.74 E-value=47 Score=29.75 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=27.8
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
++|+|+.||......+.+..++++| |.|++..|
T Consensus 71 ~~D~V~i~tp~~~h~~~~~~al~~G-~~v~~eKp 103 (346)
T 3cea_A 71 NIDAIFIVAPTPFHPEMTIYAMNAG-LNVFCEKP 103 (346)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSC
T ss_pred CCCEEEEeCChHhHHHHHHHHHHCC-CEEEEcCC
Confidence 6999999999999999999999998 45666444
No 54
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=27.30 E-value=39 Score=30.97 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.4
Q ss_pred ccccEEEEecCCc----CCHHHHHHHHHCCCCeEEe
Q psy6885 56 SGAEYVVESTGVF----TTIEKASAHLAGGAKKVII 87 (301)
Q Consensus 56 ~gvdiv~e~tG~f----~s~e~a~~hl~aGak~ViI 87 (301)
..+|+|++||+.. ...+.+..++++|. .||.
T Consensus 85 ~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGk-hVvt 119 (331)
T 3c8m_A 85 RDFDIVVDATPASADGKKELAFYKETFENGK-DVVT 119 (331)
T ss_dssp SSCSEEEECSCCCSSSHHHHHHHHHHHHTTC-EEEE
T ss_pred CCCCEEEECCCCCCccchHHHHHHHHHHCCC-eEEe
Confidence 4799999999986 55678889999985 4444
No 55
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=25.55 E-value=38 Score=28.91 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=46.9
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-CCCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhc
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-DAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDN 133 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~-d~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~ 133 (301)
.++|+|++|++.....+.+..++++|. .||+..|.. +.+-...++-. .... ...++-.+++... ...++....
T Consensus 49 ~~~DvVv~~~~~~~~~~~~~~~l~~G~-~vv~~~~~~~~~~~~~~~l~~-~a~~~g~~~~i~~~~~g~--~~~~~~~~~- 123 (236)
T 2dc1_A 49 REMDVAVEAASQQAVKDYAEKILKAGI-DLIVLSTGAFADRDFLSRVRE-VCRKTGRRVYIASGAIGG--LDAIFSASE- 123 (236)
T ss_dssp SCCSEEEECSCHHHHHHHHHHHHHTTC-EEEESCGGGGGSHHHHHHHHH-HHHHHCCCEEECCTTCSC--HHHHHHTGG-
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCC-cEEEECcccCChHHHHHHHHH-HHHhcCCeEEecCccccC--hHHHHHhhc-
Confidence 379999999999988899999999997 344433321 11100001100 0000 1223333333322 123444333
Q ss_pred cCeeEEEEeeeecc
Q psy6885 134 FEIVEGLMTTVHAT 147 (301)
Q Consensus 134 fgI~~~~~TT~ha~ 147 (301)
|+++..++++|+.
T Consensus 124 -~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 124 -LIEEIVLTTRKNW 136 (236)
T ss_dssp -GEEEEEEEEEEEG
T ss_pred -cccEEEEEEEcCh
Confidence 8999998888875
No 56
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=25.09 E-value=61 Score=29.51 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=29.8
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
..+|+|+.||......+.+..++++| |.|++--|
T Consensus 64 ~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP 97 (358)
T 3gdo_A 64 PAIELVIVTTPSGLHYEHTMACIQAG-KHVVMEKP 97 (358)
T ss_dssp TTCCEEEECSCTTTHHHHHHHHHHTT-CEEEEESS
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHcC-CeEEEecC
Confidence 47999999999999999999999999 57777655
No 57
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=24.88 E-value=37 Score=26.68 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=31.1
Q ss_pred CCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 46 RDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 46 ~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
.+.+++| . +|+|+-++......+..+...+.|+|.|+++
T Consensus 51 ~sl~dlp---~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~ 89 (122)
T 3ff4_A 51 NERPVIE---G-VDTVTLYINPQNQLSEYNYILSLKPKRVIFN 89 (122)
T ss_dssp CSCCCCT---T-CCEEEECSCHHHHGGGHHHHHHHCCSEEEEC
T ss_pred CChHHCC---C-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEEC
Confidence 5567776 2 8999998888777777888888999987775
No 58
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=24.39 E-value=27 Score=27.84 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcCCCCccccccccc
Q psy6885 221 YDEIKAKVKAAAEGPLAGILGYTEDE 246 (301)
Q Consensus 221 ~eei~~~l~~a~~~~lkgil~~~e~~ 246 (301)
.+|+.+.+++..+...+|++-|.+|.
T Consensus 72 p~eVdkm~~k~~q~~~dGl~iYCDde 97 (126)
T 2rbg_A 72 KNEVDIFLKNLEKSEVDGLLVYCDDE 97 (126)
T ss_dssp GGGHHHHHHHHTTCCCCEEEEEECGG
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 37899999999999999999998775
No 59
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=24.09 E-value=69 Score=28.95 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=29.8
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
..+|+|+-||......+.+..++++| |.|++--|
T Consensus 66 ~~vD~V~i~tp~~~H~~~~~~al~aG-khV~~EKP 99 (352)
T 3kux_A 66 PSIDLIVIPTPNDTHFPLAQSALAAG-KHVVVDKP 99 (352)
T ss_dssp SSCCEEEECSCTTTHHHHHHHHHHTT-CEEEECSS
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEECC
Confidence 46999999999999999999999999 57888666
No 60
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=23.75 E-value=1e+02 Score=26.63 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=35.6
Q ss_pred cccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCCC-CCC--eEEecC
Q psy6885 55 KSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-DAP--MFVCGV 101 (301)
Q Consensus 55 ~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps~-d~p--lvV~gV 101 (301)
+.++|+++-|+......+-+....++|.+.++--+|.. .+| .+|-.|
T Consensus 146 ~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap~~l~vp~~v~v~~v 195 (212)
T 3keo_A 146 DSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYV 195 (212)
T ss_dssp CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECSSSCCCCCTTSEEEEC
T ss_pred HcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCCcccCCCCCcEEEEe
Confidence 45799999999888777888888999999888887743 344 444444
No 61
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=23.36 E-value=25 Score=21.92 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.9
Q ss_pred CCCCCCCCCcccee
Q psy6885 2 TGNFAKSPPARFSS 15 (301)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (301)
+.|||+|--.||+|
T Consensus 15 aNNFARSF~pML~Y 28 (35)
T 4dxr_B 15 SNNFARSFHPMLRY 28 (35)
T ss_dssp CCTGGGSSSCEEEE
T ss_pred hhhHHHHhHHHHhc
Confidence 56999999999999
No 62
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.75 E-value=67 Score=28.82 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=29.6
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
..+|+|+-||......+.+..++++| |.|++-.|
T Consensus 64 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP 97 (344)
T 3euw_A 64 DDIDGIVIGSPTSTHVDLITRAVERG-IPALCEKP 97 (344)
T ss_dssp SCCCEEEECSCGGGHHHHHHHHHHTT-CCEEECSC
T ss_pred CCCCEEEEeCCchhhHHHHHHHHHcC-CcEEEECC
Confidence 37899999999999999999999999 56887666
No 63
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=21.68 E-value=76 Score=28.68 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.5
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.++|+|+-||......+.+..++++| |.|++--|
T Consensus 64 ~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP 97 (349)
T 3i23_A 64 PEIELITICTPAHTHYDLAKQAILAG-KSVIVEKP 97 (349)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSC
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHcC-CEEEEECC
Confidence 46999999999999999999999999 57777555
No 64
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=21.31 E-value=79 Score=29.97 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.5
Q ss_pred ccEEEEecCCcCCHHHHHHHHHCCCCeEEec
Q psy6885 58 AEYVVESTGVFTTIEKASAHLAGGAKKVIIS 88 (301)
Q Consensus 58 vdiv~e~tG~f~s~e~a~~hl~aGak~ViIs 88 (301)
+|+|+++++.+.-.+.+-+++++| |.|+..
T Consensus 94 iDvVV~ai~G~aGl~ptlaAi~aG-K~VvlA 123 (388)
T 1r0k_A 94 ADWTMAAIIGCAGLKATLAAIRKG-KTVALA 123 (388)
T ss_dssp CSEEEECCCSGGGHHHHHHHHHTT-SEEEEC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHCC-CEEEEe
Confidence 799999995566778888899998 455553
No 65
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=21.10 E-value=80 Score=28.13 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=29.2
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.+|+|+-||......+.+..++++| |.|++-.|
T Consensus 63 ~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP 95 (331)
T 4hkt_A 63 DIDAVVICTPTDTHADLIERFARAG-KAIFCEKP 95 (331)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSC
T ss_pred CCCEEEEeCCchhHHHHHHHHHHcC-CcEEEecC
Confidence 7899999999999999999999999 56877666
No 66
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=20.74 E-value=83 Score=27.86 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=28.1
Q ss_pred cccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 57 gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
++|+|+.||......+.+..++++| |.|++..|
T Consensus 69 ~~D~V~i~tp~~~h~~~~~~al~~G-k~v~~eKP 101 (315)
T 3c1a_A 69 EVEAVIIATPPATHAEITLAAIASG-KAVLVEKP 101 (315)
T ss_dssp TCCEEEEESCGGGHHHHHHHHHHTT-CEEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCC-CcEEEcCC
Confidence 7899999999998899999999999 45776555
No 67
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=20.52 E-value=46 Score=30.14 Aligned_cols=28 Identities=29% Similarity=0.241 Sum_probs=20.7
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAK 83 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak 83 (301)
.|+|+||||+|...+.+.+-..++.|-+
T Consensus 251 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~ 278 (363)
T 3m6i_A 251 IEPAVALECTGVESSIAAAIWAVKFGGK 278 (363)
T ss_dssp CCCSEEEECSCCHHHHHHHHHHSCTTCE
T ss_pred CCCCEEEECCCChHHHHHHHHHhcCCCE
Confidence 3799999999976555666667776653
No 68
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=20.45 E-value=1e+02 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=25.5
Q ss_pred cccccEEEEecCCcCC----HHHHHHHHHCCCCeEEecCC
Q psy6885 55 KSGAEYVVESTGVFTT----IEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 55 ~~gvdiv~e~tG~f~s----~e~a~~hl~aGak~ViIsap 90 (301)
+..+|+|+|||+.... .+.+..++++|. .||..+.
T Consensus 80 ~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGk-hVVtaNK 118 (325)
T 3ing_A 80 GEAADLLVDCTPASRDGVREYSLYRMAFESGM-NVVTANK 118 (325)
T ss_dssp TSCCSEEEECCCCCSSSHHHHHHHHHHHHTTC-EEEECCC
T ss_pred CCCCCEEEECCCCccccchHHHHHHHHHHCCC-eEEEcCc
Confidence 3478999999987543 478889999996 4444444
No 69
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=20.34 E-value=79 Score=28.31 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=29.5
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
..+|+|+-||......+.+..++++| |.|++-.|
T Consensus 66 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP 99 (330)
T 3e9m_A 66 ETIDIIYIPTYNQGHYSAAKLALSQG-KPVLLEKP 99 (330)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHTT-CCEEECSS
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHCC-CeEEEeCC
Confidence 37899999999999999999999999 56888666
No 70
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=20.30 E-value=89 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=29.5
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
.++|+|+-||......+.+..++++| |.|++--|
T Consensus 65 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP 98 (354)
T 3db2_A 65 EDVEMVIITVPNDKHAEVIEQCARSG-KHIYVEKP 98 (354)
T ss_dssp SSCCEEEECSCTTSHHHHHHHHHHTT-CEEEEESS
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcC-CEEEEccC
Confidence 46999999999999999999999999 56777666
No 71
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=20.25 E-value=56 Score=22.81 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=21.9
Q ss_pred ceEEecC-CceEECCEEEEEEecCCCCCCCccc
Q psy6885 24 STFFSCK-WPPVVNGNKIAVHSERDPKDIPWAK 55 (301)
Q Consensus 24 ~~v~a~~-~~l~i~gk~I~v~~~~~~~~~~w~~ 55 (301)
||+..|+ ..|.||||+|+.. .+.-.-+|+.
T Consensus 11 gtidieddtsltingkeisyv--hdavknkwss 41 (73)
T 2jv8_A 11 GTIDIEDDTSLTINGKEISYV--HDAVKNKWSS 41 (73)
T ss_dssp EEEEEETTEEEEETTEECCCC--CCSSSCCCCC
T ss_pred CeeeeccCceeEECCEEeehH--HHHHhccccc
Confidence 6788875 6899999998774 4555566763
No 72
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=20.01 E-value=1.1e+02 Score=27.85 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=29.0
Q ss_pred ccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCC
Q psy6885 56 SGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90 (301)
Q Consensus 56 ~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsap 90 (301)
..+|+|+.||......+.+..++++| |.|++--|
T Consensus 82 ~~iD~V~i~tp~~~h~~~~~~al~~G-k~V~~EKP 115 (383)
T 3oqb_A 82 KNDTMFFDAATTQARPGLLTQAINAG-KHVYCEKP 115 (383)
T ss_dssp SSCCEEEECSCSSSSHHHHHHHHTTT-CEEEECSC
T ss_pred CCCCEEEECCCchHHHHHHHHHHHCC-CeEEEcCC
Confidence 46999999999999999999999999 56776544
Done!