RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6885
(301 letters)
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 466 bits (1201), Expect = e-165
Identities = 192/263 (73%), Positives = 230/263 (87%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA 94
+NG +I V S+RDP +IPW GAEYVVES+GVFTT+EKASAHL GGAKKV+ISAPSADA
Sbjct: 152 INGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADA 211
Query: 95 PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTV 154
PMFV GVN Y P+ ++SNASCTTNCLAPLAKV+H+ F I+EGLMTTVHATTATQKTV
Sbjct: 212 PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTV 271
Query: 155 DGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 214
DGPS K WR GRGA+QNIIP++TGAAKAVGKV+P LNGKLTGMAFRVP NVSVVDLT R
Sbjct: 272 DGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCR 331
Query: 215 LGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFV 274
L K A+Y+++KA +K A+EGPL GILGYT+++VVS+DF+GD+ SSIFDA+AGI L+ F+
Sbjct: 332 LEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFM 391
Query: 275 KLISWYDNEYGYSNRVVDLIKYI 297
KL+SWYDNE+GYSNRV+DLI+++
Sbjct: 392 KLVSWYDNEWGYSNRVLDLIEHM 414
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 337
Score = 415 bits (1068), Expect = e-147
Identities = 186/271 (68%), Positives = 212/271 (78%), Gaps = 3/271 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SA 92
++ K+ V E+DP IPW K+G + V ESTGVF T EKA AHL GGAKKVI+SAP
Sbjct: 67 MIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD 126
Query: 93 DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
D P++V GVN YD S +++SNASCTTNCLAPLAKV++D F IVEGLMTTVHA+TA Q
Sbjct: 127 DTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHASTANQL 186
Query: 153 TVDGPS--GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210
TVDGPS GK WR GR A NIIPA+TGAAKAVGKVIP LNGKLTGMAFRVPV +VSVVD
Sbjct: 187 TVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVPDVSVVD 246
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
LT +L K A Y+EI A VK AAEGPL GILGYT+DEVVSSDF+ D SSIFD +AGI LN
Sbjct: 247 LTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALN 306
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
FVKL+SWYDNE+GYSNR++DL YI K
Sbjct: 307 DTFVKLVSWYDNEWGYSNRLLDLAHYITQKY 337
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 335
Score = 411 bits (1060), Expect = e-145
Identities = 170/270 (62%), Positives = 194/270 (71%), Gaps = 3/270 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHL-AGGAKKVIISAPSA 92
VVNG I V +ERDP ++PWA G + VVE TG FT EKA HL AGGAKKV+ISAP
Sbjct: 66 VVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGK 125
Query: 93 DA-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
D V GVN + YD ++SNASCTTNCLAP+AKV++D F I +GLMTTVHA T Q
Sbjct: 126 DDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQ 185
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
K VDGP K R R AA NIIP +TGAAKAVG V+P L GKLTGMA RVP NVSVVDL
Sbjct: 186 KLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNVSVVDL 244
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
TV L K+ T +EI A +KAA+E L GILGYTED +VSSDF GD HSSIFDA A I L G
Sbjct: 245 TVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGG 304
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VKL++WYDNE+GYSNRVVDL+ +
Sbjct: 305 NLVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. This model represents glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), the enzyme responsible for the
interconversion of 1,3-diphosphoglycerate and
glyceraldehyde-3-phosphate, a central step in glycolysis
and gluconeogenesis. Forms exist which utilize NAD (EC
1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In
some species, NAD- and NADP- utilizing forms exist,
generally being responsible for reactions in the
anabolic and catabolic directions respectively. Two PFAM
models cover the two functional domains of this protein;
pfam00044 represents the N-terminal NAD(P)-binding
domain and pfam02800 represents the C-terminal catalytic
domain. An additional form of gap gene is found in gamma
proteobacteria and is responsible for the conversion of
erythrose-4-phosphate (E4P) to 4-phospho-erythronate in
the biosynthesis of pyridoxine. This pathway of
pyridoxine biosynthesis appears to be limited, however,
to a relatively small number of bacterial species
although it is prevalent among the gamma-proteobacteria.
This enzyme is described by TIGR001532. These sequences
generally score between trusted and noise to this GAPDH
model due to the close evolutionary relationship. There
exists the possiblity that some forms of GAPDH may be
bifunctional and act on E4P in species which make
pyridoxine and via hydroxythreonine and lack a separate
E4PDH enzyme (for instance, the GAPDH from Bacillus
stearothermophilus has been shown to posess a limited
E4PD activity as well as a robust GAPDH activity). There
are a great number of sequences in the databases which
score between trusted and noise to this model, nearly
all of them due to fragmentary sequences. It seems that
study of this gene has been carried out in many species
utilizing PCR probes which exclude the extreme ends of
the consenses used to define this model. The noise level
is set relative not to E4PD, but the next closest
outliers, the class II GAPDH's (found in archaea,
TIGR01546) and aspartate semialdehyde dehydrogenase
(ASADH, TIGR01296) both of which have highest-scoring
hits around -225 to the prior model [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 326
Score = 408 bits (1051), Expect = e-144
Identities = 161/263 (61%), Positives = 187/263 (71%), Gaps = 5/263 (1%)
Query: 34 VVNGNK-IAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA 92
VVNG + I+V SERDP D+PW G + V+E TG F EK HL GAKKV+ISAPS
Sbjct: 65 VVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSK 124
Query: 93 -DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
D V GVN D YDPS +++SNASCTTNCLAPLAKV+ + F IV GLMTTVH+ T Q
Sbjct: 125 GDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQ 184
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
VDGP R R AA NIIP +TGAAKA+GKV+P L GKLTGMA RVP NVS+VDL
Sbjct: 185 NLVDGPHKD-LRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPNVSLVDL 243
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGI--PL 269
V L KD T +E+ A +K AAEG L G+LGYTEDE+VSSDFIG +SSI DA A L
Sbjct: 244 VVNLEKDVTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGL 303
Query: 270 NGKFVKLISWYDNEYGYSNRVVD 292
VK+++WYDNE+GYSNRVVD
Sbjct: 304 GDSLVKVVAWYDNEWGYSNRVVD 326
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
Length = 338
Score = 371 bits (954), Expect = e-129
Identities = 184/258 (71%), Positives = 217/258 (84%)
Query: 40 IAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVC 99
+ V R+P+DIPW ++GA++VVESTGVFT +KA+AHL GGAKKV+ISAPS DAPMFV
Sbjct: 78 VTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVV 137
Query: 100 GVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSG 159
GVN Y ++SNASCTTNCLAPLAKVI+D F IVEGLMTTVH+ TATQKTVDGPS
Sbjct: 138 GVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSM 197
Query: 160 KLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDA 219
K WR GR A+ NIIP++TGAAKAVGKV+P+LNGKLTGM+FRVP +VSVVDLTVRL K A
Sbjct: 198 KDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAA 257
Query: 220 TYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISW 279
TYDEIK +K +EG L GILGYTED+VVS+DF+GD SSIFDA+AGI L+ KFVKL+SW
Sbjct: 258 TYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSW 317
Query: 280 YDNEYGYSNRVVDLIKYI 297
YDNE+GYS+RVVDLI ++
Sbjct: 318 YDNEWGYSSRVVDLIVHM 335
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 331
Score = 350 bits (900), Expect = e-121
Identities = 181/265 (68%), Positives = 215/265 (81%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+++ PS D
Sbjct: 66 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD 125
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
PMFV G N D Y ++SNASCTTNCLAPLAKVI+DNF I+EGLMTTVHATTATQK
Sbjct: 126 NTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQK 184
Query: 153 TVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 212
TVDGPS K WR GRGA+QNIIP++TGAAKAVGKV+P LNGKLTGMAFRVP NVSVVDLT
Sbjct: 185 TVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLT 244
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
VRL K ATY++IKA VKAAAEG + G+LGYTED+VVS+DF G+ +S+FDA+AGI LN
Sbjct: 245 VRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDN 304
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
FVKL+SWYDNE GYSN+V+DLI +I
Sbjct: 305 FVKLVSWYDNETGYSNKVLDLIAHI 329
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 343
Score = 320 bits (821), Expect = e-109
Identities = 135/266 (50%), Positives = 178/266 (66%), Gaps = 3/266 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G KI + + RDPK++PW G + V+E+TG F + EKA H+ GAKKVI++AP +
Sbjct: 66 LVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKN 125
Query: 94 APM-FVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
+ V GVN D D +ISNASCTTNCLAP+ KV+ + F I GLMTTVHA T Q
Sbjct: 126 EDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQ 185
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
K +D P L R R Q+IIP TGAAKA+ KV+P LNGKL GMA RVP NVS+VDL
Sbjct: 186 KNIDNPHKDL-RRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDL 244
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
V + +D T +EI K AA G L GIL ++E+ +VS DF +THS+I D + + +
Sbjct: 245 VVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGD 304
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYI 297
+ VK+++WYDNE+GYS RVVDL+ +
Sbjct: 305 RKVKVLAWYDNEWGYSCRVVDLVTLV 330
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate
dehydrogenase; Provisional.
Length = 361
Score = 320 bits (821), Expect = e-109
Identities = 158/276 (57%), Positives = 200/276 (72%), Gaps = 8/276 (2%)
Query: 34 VVNGNKI-AVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
VVNG++I V ++R+P D+PW K G +YV+ESTG+FT A HL GGAKKV+ISAP S
Sbjct: 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPAS 139
Query: 92 ADAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVI-HDNFEIVEGLMTTVHATTA 149
A V GVN Y P V+SNASCTTNCLAP+ V+ + F I GLMTT+H+ TA
Sbjct: 140 GGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTA 199
Query: 150 TQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVV 209
TQKTVDG S K WR GR AA NIIP+ TGAAKAVG VIP+ GKLTGM+FRVP +VSVV
Sbjct: 200 TQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVV 259
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQA---- 265
DLT R +D + EI A +K A++ + GILG+T+DE+VS+DFI D SSI+D++A
Sbjct: 260 DLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQN 319
Query: 266 GIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
+P +F K++SWYDNE+GYS+RVVDL++Y+ KD
Sbjct: 320 NLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD 355
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 337
Score = 284 bits (729), Expect = 2e-95
Identities = 139/270 (51%), Positives = 180/270 (66%), Gaps = 4/270 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP--S 91
VNG I S+R+P ++PW + G + ++ESTGVF T E AS H+ GAKKV+I+AP
Sbjct: 67 TVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKG 126
Query: 92 ADAPMFVCGVNLDAYD-PSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT 150
D +V GVN YD +ISNASCTTNCLAP+AKV+HDNF I++G MTT H+ T
Sbjct: 127 EDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGD 186
Query: 151 QKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210
Q+ +D L R R AA NI+P +TGAAKAV VIP L GKL G+A RVP NVSVVD
Sbjct: 187 QRILDASHRDL-RRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVD 245
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
L V++ K +++ +K A+EGPL GIL Y++ +VSSD+ G SSI DA + +
Sbjct: 246 LVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMG 305
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
G VK+I+WYDNE+GYS RVVDL + + K
Sbjct: 306 GDMVKVIAWYDNEWGYSQRVVDLAELVARK 335
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 157
Score = 270 bits (692), Expect = 3e-92
Identities = 110/158 (69%), Positives = 125/158 (79%), Gaps = 1/158 (0%)
Query: 123 LAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKA 182
LAPLAKV++DNF I +GLMTTVHA TA QK VD PS K R GR AA NIIP +TGAAKA
Sbjct: 1 LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVD-PSHKDLRRGRAAAPNIIPTSTGAAKA 59
Query: 183 VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGY 242
VG V+P L GKLTGMAFRVP NVSVVDLTV L K T +E+ A +K AAEG L GILGY
Sbjct: 60 VGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGY 119
Query: 243 TEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWY 280
TE+ +VSSDF+GD HSSIFDA+A I LNG FVK+++WY
Sbjct: 120 TEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 157
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 395
Score = 261 bits (667), Expect = 2e-85
Identities = 128/267 (47%), Positives = 167/267 (62%), Gaps = 2/267 (0%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-AD 93
V+G I V S+R+P ++PW + G + V+E TGVF E A H+ GAKKV+I+AP D
Sbjct: 128 VDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD 187
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 153
P +V GVN D Y S +ISNASCTTNCLAP KV+ F I++G MTT H+ T Q+
Sbjct: 188 IPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL 247
Query: 154 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 213
+D L R R AA NI+P +TGAAKAV V+P L GKL G+A RVP NVSVVDL V
Sbjct: 248 LDASHRDL-RRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVV 306
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
++ K +E+ A + AAE L GIL ++ +VS DF SS D+ + +
Sbjct: 307 QVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDM 366
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+++WYDNE+GYS RVVDL + K
Sbjct: 367 VKVVAWYDNEWGYSQRVVDLADIVANK 393
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 256 bits (656), Expect = 5e-83
Identities = 133/270 (49%), Positives = 169/270 (62%), Gaps = 5/270 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS--A 92
V+G I V S RDP +PWA+ G + V+E TGVF A H+ GAKKVII+AP+ A
Sbjct: 143 VDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGA 202
Query: 93 DAPMFVCGVNLDAYDPSF-KVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
D P +V GVN D YD ++SNASCTTNCLAP KV+ + F IV+G MTT H+ T Q
Sbjct: 203 DIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ 262
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
+ +D L R R AA NI+P +TGAAKAV V+P L GKL G+A RVP NVSVVDL
Sbjct: 263 RLLDASHRDL-RRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDL 321
Query: 212 TVRLGKDA-TYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
V + K T +++ A + AA+GPL GIL + +VS DF SS DA + +
Sbjct: 322 VVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMG 381
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+++WYDNE+GYS RVVDL + K
Sbjct: 382 DDMVKVVAWYDNEWGYSQRVVDLAHLVAAK 411
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 334
Score = 239 bits (612), Expect = 9e-78
Identities = 115/271 (42%), Positives = 162/271 (59%), Gaps = 6/271 (2%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V+NG +I + D W SG + V+E++GV T A+L G K+V+++AP +
Sbjct: 67 VINGKRIRTTQNKAIADTDW--SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKE 124
Query: 94 APMF--VCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT 150
+ V GVN +DP+ +++ ASCTTNCLAP+ KVIH+ I G MTT+H T T
Sbjct: 125 EGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNT 184
Query: 151 QKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210
Q +D P L R R ++IP TG+A A+ ++ P L GKL G A RVP+AN S+ D
Sbjct: 185 QTILDAPHKDL-RRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLANASLTD 243
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
+ +D T +E+ A +K AAEG L GILGY E +VS D+ D SSI DA + + +N
Sbjct: 244 CVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVN 303
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
G VKL +WYDNE+GY+NR +L + + D
Sbjct: 304 GTQVKLYAWYDNEWGYANRTAELARKVGLAD 334
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 477
Score = 228 bits (583), Expect = 1e-71
Identities = 107/270 (39%), Positives = 154/270 (57%), Gaps = 8/270 (2%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAE--YVVESTGVFTTIEKASAHL-AGGAKKVIISAP 90
+ NGN I V P+++ + G VV++TG + E S HL + G KV+++AP
Sbjct: 201 IANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAP 260
Query: 91 S-ADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTA 149
D V GVN K++S ASCTTN + P+ K ++D + IV G + TVH+ T
Sbjct: 261 GKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTN 320
Query: 150 TQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVV 209
Q +D K R GR A N++ TGAAKAV K +P L GKLTG A RVP NVS+
Sbjct: 321 DQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNAIRVPTPNVSMA 379
Query: 210 DLTVRLGKDATYDEIKAKVKAAA-EGPLAGILGYTED-EVVSSDFIGDTHSSIFDAQAGI 267
L + L K+ + +E+ ++ + PL + YT+ EVVSSDF+G H+ + D+QA I
Sbjct: 380 ILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATI 439
Query: 268 PLNGKFVKLISWYDNEYGYSNRVVDLIKYI 297
+NG L WYDNE+GYS +VV +++ +
Sbjct: 440 -VNGNRAVLYVWYDNEFGYSCQVVRVMEQM 468
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase.
This model represents the small clade of dehydrogenases
in gamma-proteobacteria which utilize NAD+ to oxidize
erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a
precursor for the de novo synthesis of pyridoxine via
4-hydroxythreonine and D-1-deoxyxylulose. This enzyme
activity appears to have evolved from
glyceraldehyde-3-phosphate dehydrogenase, whose
substrate differs only in the lack of one carbon
relative to E4P. Accordingly, this model is very close
to the corresponding models for GAPDH, and those
sequences which hit above trusted here invariably hit
between trusted and noise to the GAPDH model
(TIGR01534). Similarly, it may be found that there are
species outside of the gamma proteobacteria which
synthesize pyridoxine and have more than one aparrent
GAPDH gene of which one may have E4PD activity - this
may necessitate a readjustment of these models.
Alternatively, some of the GAPDH enzymes may prove to be
bifunctional in certain species [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 325
Score = 212 bits (540), Expect = 4e-67
Identities = 101/261 (38%), Positives = 150/261 (57%), Gaps = 5/261 (1%)
Query: 35 VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA-- 92
V + I V ER + +PW + G + V++ TGV+ + E AH+A GAKKV+ S P A
Sbjct: 67 VGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGASD 126
Query: 93 -DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
DA + V GVN D +++SNASCTTNC+ P+ K++ D + I G +TT+H+ Q
Sbjct: 127 LDATI-VYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAYGIESGTITTIHSAMNDQ 185
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
+ +D L R R A+Q+IIP T A + + P N + +A RVP NV+ +DL
Sbjct: 186 QVIDAYHPDL-RRTRAASQSIIPVDTKLAAGIERFFPQFNDRFEAIAVRVPTVNVTAIDL 244
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
+V + K +E+ ++ AA+G L GI+ YTE +VS DF D HS+I D
Sbjct: 245 SVTVKKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGA 304
Query: 272 KFVKLISWYDNEYGYSNRVVD 292
VK + W DNE+G++NR++D
Sbjct: 305 HLVKTLVWCDNEWGFANRMLD 325
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 204 bits (520), Expect = 6e-64
Identities = 97/256 (37%), Positives = 148/256 (57%), Gaps = 5/256 (1%)
Query: 40 IAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA---DAPM 96
I + ERD +PW + G + V++ TGV+ + E AH+A GAKKV+ S P + DA +
Sbjct: 74 IRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATV 133
Query: 97 FVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDG 156
V GVN D +++SNASCTTNC+ P+ K++ D F I G +TT+H+ Q+ +D
Sbjct: 134 -VYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDA 192
Query: 157 PSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLG 216
L R R A+Q+IIP T A + ++ P N + ++ RVP NV+ +DL+V +
Sbjct: 193 YHPDL-RRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVK 251
Query: 217 KDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKL 276
K +E+ ++ AA+G GI+ YTE +VS DF D HS+I D +K
Sbjct: 252 KPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKT 311
Query: 277 ISWYDNEYGYSNRVVD 292
+ W DNE+G++NR++D
Sbjct: 312 LVWCDNEWGFANRMLD 327
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 342
Score = 151 bits (383), Expect = 1e-43
Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 3/262 (1%)
Query: 36 NGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAP 95
KI V ++ D +I W G +YVVE TG+++T + H+ GGAK V ++ SADAP
Sbjct: 71 GTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAP 130
Query: 96 MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT-V 154
+ G N + S V + LAP+ + +H+ + + E T +H +
Sbjct: 131 TVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQPQEPIAA 190
Query: 155 DGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 214
+ + WR R A I P A+ V K++P L G+++G AF+VPV +D+ VR
Sbjct: 191 RSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVKKGCAIDMLVR 250
Query: 215 LGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPL-NGKF 273
+ + + + + + AA L G+L ++ +++S D I + +DA + G+
Sbjct: 251 TKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEV 309
Query: 274 VKLISWYDNEYGYSNRVVDLIK 295
K++ W+D E Y+ R++ L+K
Sbjct: 310 HKMVLWFDVECYYAARLLSLVK 331
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 148
Score = 139 bits (353), Expect = 3e-41
Identities = 57/109 (52%), Positives = 67/109 (61%), Gaps = 14/109 (12%)
Query: 10 PARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFT 69
DED L +VNG KI V +ERDP ++PW + G + VVESTGVFT
Sbjct: 53 DGEVEVDEDGL-------------IVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFT 99
Query: 70 TIEKASAHLAGGAKKVIISAPSAD-APMFVCGVNLDAYDPSFKVISNAS 117
T EKA AHL GAKKVIISAP+ D P FV GVN + YDP ++SNAS
Sbjct: 100 TAEKAEAHLKAGAKKVIISAPAKDDDPTFVYGVNHEDYDPEDDIVSNAS 148
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 149
Score = 133 bits (337), Expect = 9e-39
Identities = 56/86 (65%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG I V +ERDP ++PW + G + VVE TG FTT EKASAHL GAKKVIISAPS D
Sbjct: 64 VVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVIISAPSKD 123
Query: 94 A-PMFVCGVNLDAYDPSFKVISNASC 118
A P FV GVN D YD +ISNASC
Sbjct: 124 ADPTFVYGVNHDEYDGEDHIISNASC 149
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 41.8 bits (99), Expect = 2e-04
Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 40/188 (21%)
Query: 82 AKKVIISAPSA-----DAPMFVCGVNLDA---YDPSFKVISNASCTTNCLAPLAKVIHDN 133
A V+I SA D P+ V VN + Y +I+N +C+T L K +HD
Sbjct: 89 AGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDA 148
Query: 134 FEIVEGLMTTVHATT------ATQKTVD---------GPSGKLWRDGRGAAQNIIPAATG 178
F I V +T A + + G A N+IP G
Sbjct: 149 FGIK-----RVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDG 203
Query: 179 AAKA------------VGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKA 226
K++ + K++ RVPV +TV KD +EI+
Sbjct: 204 FLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIRE 263
Query: 227 KVKAAAEG 234
++ +A G
Sbjct: 264 ELLPSAPG 271
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 31.9 bits (73), Expect = 0.36
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 43 HSERDPKDIPWAKS--GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPM 96
+ E D ++ GA+ V+++ G T+ +A L G + V++ S P+
Sbjct: 185 YKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPL 240
>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978 [Amino
acid biosynthesis, Aspartate family].
Length = 338
Score = 31.3 bits (71), Expect = 0.50
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 93 DAPMFVCGVNL--DAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHA 146
D P+ V VN +I+N +C+T + + K +HD +I +++T A
Sbjct: 100 DVPLVVPEVNFEDLKEFNPKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQA 155
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 30.8 bits (70), Expect = 0.89
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 28/131 (21%)
Query: 125 PLAKVIHD-NFEIVEGLMTTVHATTATQKTV---------DGPSGKLWRDGRGAAQNI-I 173
P +++ +F I G + + K+ D SG + DG Q+I
Sbjct: 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDG----QDIRD 329
Query: 174 PAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAE 233
+A+G V + N ++ DAT +E+ A +AA
Sbjct: 330 VTQQSLRRAIGIV-----------PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQI 378
Query: 234 GPLAGIL--GY 242
L GY
Sbjct: 379 HDFIQSLPEGY 389
>gnl|CDD|233220 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase
(non-peptidoglycan organisms). Two closely related
families of aspartate-semialdehyde dehydrogenase are
found. They differ by a deep split in phylogenetic and
percent identity trees and in gap patterns. Separate
models are built for the two types in order to exclude
the USG-1 protein, found in several species, which is
specifically related to the Bacillus subtilis type of
aspartate-semialdehyde dehydrogenase. Members of this
type are found primarily in organisms that lack
peptidoglycan [Amino acid biosynthesis, Aspartate
family].
Length = 341
Score = 29.3 bits (66), Expect = 2.2
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 22/151 (14%)
Query: 111 KVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQ 170
+++N +CTT L K + D F I + +TT+ A + G G
Sbjct: 139 FIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGA-----GYPGV---PSMDILD 190
Query: 171 NIIPAATGAAKAV-------------GKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGK 217
NIIP G + + GK+ PA ++ RVPV + + V K
Sbjct: 191 NIIPHIGGEEEKIERETRKILGKLENGKIEPA-PFSVSATTTRVPVLDGHTESVHVEFDK 249
Query: 218 DATYDEIKAKVKAAAEGPLAGILGYTEDEVV 248
+EI+ +K+ P L ++ +
Sbjct: 250 KFDIEEIREALKSFRGLPQKLGLPSAPEKPI 280
>gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 334
Score = 27.8 bits (63), Expect = 6.5
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 22/101 (21%)
Query: 57 GAEYVVE--STGVFTTIE-----------KASAHLAGGAKKVIISAPSA-----DAPMFV 98
G E VE +T F+ ++ K A A A V+I SA D P+ V
Sbjct: 48 GKELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVV 107
Query: 99 CGVNLDAYDPSFK---VISNASCTTNCLAPLAKVIHDNFEI 136
VN +A + +I+N +C+T + K +HD I
Sbjct: 108 PEVNPEALA-EHRKKGIIANPNCSTIQMVVALKPLHDAAGI 147
>gnl|CDD|113491 pfam04723, GRDA, Glycine reductase complex selenoprotein A. Found
in clostridia, this protein contains one active site
selenocysteine and catalyzes the reductive deamination
of glycine, which is coupled to the esterification of
orthophosphate resulting in the formation of ATP. A
member of this family may also exist in Treponema
denticola.
Length = 150
Score = 27.2 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 234 GPLAGI-LGYTEDEVVSSDFIGDTHSSIFDAQAGI 267
GPLAG+ LG V +F + +I+D Q G+
Sbjct: 97 GPLAGVELGLRVYHAVEPEFKAEVDEAIYDDQCGM 131
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS
subfamily, TPP-binding module;
1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis. Terpeniods are plant
natural products with important pharmaceutical activity.
DXS catalyzes a transketolase-type condensation of
pyruvate with D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
The formation of DXP leads to the formation of the
terpene precursor IPP (isopentyl diphosphate) and to the
formation of thiamine (vitamin B1) and pyridoxal
(vitamin B6).
Length = 195
Score = 27.5 bits (62), Expect = 7.3
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 149 ATQKTVDGPSGKLWRD-------GRGAAQNIIPAATGAAKA------VGKVIPAL-NGKL 194
T + G SG R G G + I AA G A A KVI + +G L
Sbjct: 50 HTLRQYGGLSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGAL 109
Query: 195 T-GMAF 199
T GMAF
Sbjct: 110 TGGMAF 115
>gnl|CDD|201890 pfam01614, IclR, Bacterial transcriptional regulator. This family
of bacterial transcriptional regulators includes the
glycerol operon regulatory protein and acetate operon
repressor both of which are members of the iclR family.
These proteins have a Helix-Turn-Helix motif at the
N-terminus. However this family covers the C-terminal
region that may bind to the regulatory substrate
(unpublished observation, Bateman A.).
Length = 129
Score = 26.9 bits (60), Expect = 8.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 198 AFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAE 233
A VA +SV T RL ++ + A ++ AA
Sbjct: 89 AVGDVVAAISVSGPTARLTEEELDQALLALLREAAR 124
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and
metabolism].
Length = 859
Score = 27.8 bits (62), Expect = 8.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 16 DEDDLKSPST--FFSCKWPPVV-NGNKIAVHSERDPKDI 51
DE D+K+ T + K P ++ NGN I + D + I
Sbjct: 153 DEPDVKATFTLTIRADKGPKLISNGNLIDGGTLVDGRKI 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,231,872
Number of extensions: 1439891
Number of successful extensions: 1340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 43
Length of query: 301
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 205
Effective length of database: 6,679,618
Effective search space: 1369321690
Effective search space used: 1369321690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)