RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6885
(301 letters)
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 579 bits (1495), Expect = 0.0
Identities = 184/267 (68%), Positives = 223/267 (83%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
++ + V R+P +IPWA++GAEYVVESTGVFT EKA+AHL GGAKKV+ISAPS D
Sbjct: 70 LLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKD 129
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 153
APMFVCGVN D Y ++SNASCTTNCLAPLAKVIHDNF I+EGLMTTVHA TATQKT
Sbjct: 130 APMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKT 189
Query: 154 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 213
VDGPS K WR GR A+ NIIP++TGAAKAVGKV+P LNGKLTGM+FRVP +VSVVDLTV
Sbjct: 190 VDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTV 249
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
R+ K A+YD IK+ +K+A+EG L GI+GY E+++VS+DF+GD+ SSIFDA+AGI LN F
Sbjct: 250 RIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNF 309
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTK 300
VKL++WYDNE+GYSNRV+DLI+++
Sbjct: 310 VKLVAWYDNEWGYSNRVIDLIRHMAKT 336
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 578 bits (1493), Expect = 0.0
Identities = 190/269 (70%), Positives = 226/269 (84%), Gaps = 1/269 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+ ++I+V+ ++PK IPW G+ YVVESTGV+ +I+ AS H++ GA++V+ISAPS D
Sbjct: 71 VVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPD 130
Query: 94 APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
APMFV GVN + Y+P S ++SNASCTTNCLAPLAKVIH+ F IVEGLMTTVH+ TATQK
Sbjct: 131 APMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQK 190
Query: 153 TVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 212
TVDGPS K WRDGRGA QNIIPA+TGAAKAV KVIP L GKLTGMAFRVP +VSVVDLT
Sbjct: 191 TVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLT 250
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
RL + A Y IK VKAAA+GP+AGIL YTEDEVVS+DF+GDTHSSIFDA+AGI LN
Sbjct: 251 CRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDN 310
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
FVKLISWYDNEYGYS+RVVDL++Y+ ++D
Sbjct: 311 FVKLISWYDNEYGYSHRVVDLLRYMFSRD 339
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 576 bits (1488), Expect = 0.0
Identities = 180/264 (68%), Positives = 215/264 (81%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G KIA + ERDP ++PW S + ++STGVF ++ A H+ GAKKV+I+APS+
Sbjct: 66 IVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSST 125
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 153
APMFV GVN + Y K++SNASCTTNCLAPLAKVI+D F I EGLMTTVH+ TATQKT
Sbjct: 126 APMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQKT 185
Query: 154 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 213
VDGPS K WR GR A+ NIIP++TGAAKAVGKV+P L GKLTGMAFRVP +VSVVDLTV
Sbjct: 186 VDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTV 245
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
+L K+ TYDEIK VKAAAEG L G+LGYTED VVSSDF+GD+HSSIFDA AGI L+ KF
Sbjct: 246 KLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKF 305
Query: 274 VKLISWYDNEYGYSNRVVDLIKYI 297
VKL+SWYDNEYGYS RVVDL++++
Sbjct: 306 VKLVSWYDNEYGYSTRVVDLVEHV 329
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 574 bits (1481), Expect = 0.0
Identities = 212/268 (79%), Positives = 229/268 (85%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V+NGN I + ERDP I W +GAEYVVESTGVFTT+EKA AHL GGAK+VIISAPSAD
Sbjct: 68 VINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD 127
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 153
APMFV GVN + YD S K+ISNASCTTNCLAPLAKVIHDNF IVEGLMTTVHA TATQKT
Sbjct: 128 APMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKT 187
Query: 154 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 213
VDGPSGKLWRDGRGA QNIIPA+TGAAKAVGKVIP LNGKLTGMAFRVP ANVSVVDLT
Sbjct: 188 VDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTC 247
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
RL K A YD+IK VK A+EGPL GILGYTE +VVSSDF DTHSS FDA AGI LN F
Sbjct: 248 RLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHF 307
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
VKLISWYDNE+GYSNRVVDL+ ++ +K+
Sbjct: 308 VKLISWYDNEFGYSNRVVDLMAHMASKE 335
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 573 bits (1480), Expect = 0.0
Identities = 181/265 (68%), Positives = 215/265 (81%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+++ PS D
Sbjct: 65 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD 124
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
PMFV G N D Y ++SNASCTTNCLAPLAKVI+DNF I+EGLMTTVHATTATQK
Sbjct: 125 NTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQK 183
Query: 153 TVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 212
TVDGPS K WR GRGA+QNIIP++TGAAKAVGKV+P LNGKLTGMAFRVP NVSVVDLT
Sbjct: 184 TVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLT 243
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
VRL K ATY++IKA VKAAAEG + G+LGYTED+VVS+DF G+ +S+FDA+AGI LN
Sbjct: 244 VRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDN 303
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
FVKL+SWYDNE GYSN+V+DLI +I
Sbjct: 304 FVKLVSWYDNETGYSNKVLDLIAHI 328
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 572 bits (1478), Expect = 0.0
Identities = 184/272 (67%), Positives = 208/272 (76%), Gaps = 4/272 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+NG + V +DP +IPW SGA+ V ESTGVFTT EKAS HL GGAKKVIISAP D
Sbjct: 82 CINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKD 141
Query: 94 -APMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
PM+V GVN YDPS F VISNASCTTNCLAPLAK+I+D F IVEGLMTTVH+ TA Q
Sbjct: 142 NVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQ 201
Query: 152 KTVDGPS--GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVV 209
TVDGPS GK WR GR A NIIPA+TGAAKAVGKVIPALNGKLTGMA RVP +VSVV
Sbjct: 202 LTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVV 261
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPL 269
DLT +L K A+ +EI VK A+ GP+ GI+GYT D+VVS+DFIG +SSIFD A I L
Sbjct: 262 DLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIAL 321
Query: 270 NGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
N FVKLISWYDNE GYSNR+VDL Y+ ++
Sbjct: 322 NDSFVKLISWYDNESGYSNRLVDLAVYVASRG 353
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 566 bits (1460), Expect = 0.0
Identities = 174/269 (64%), Positives = 205/269 (76%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
++ K++V +E+DP IPW K + V ESTGVF T E AS+HL GGAKKVI+SAP D
Sbjct: 76 LIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKD 135
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
P++V G+N YD ++SNASCTTNCLAPLAKVI+D F IVEGLMTTVHA+TA Q
Sbjct: 136 DTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQL 195
Query: 153 TVDGPS--GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210
VDGPS GK WR GR A NIIPA+TGAAKAVGKV+P LNGKLTG+AFRVP+ VSVVD
Sbjct: 196 VVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVD 255
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
L RL K A Y+E+ ++K AAEGPL GILGYTEDEVVS DF+ D SSIFD +AG+ LN
Sbjct: 256 LVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLALN 315
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQT 299
F KL+SWYDNE+GYSNRV+DL +I T
Sbjct: 316 DNFFKLVSWYDNEWGYSNRVLDLAVHITT 344
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 561 bits (1447), Expect = 0.0
Identities = 156/276 (56%), Positives = 202/276 (73%), Gaps = 8/276 (2%)
Query: 34 VVNGNKI-AVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
VVNG++I V ++R+P D+PW K G EYV+ESTG+FT A HL GGA+KV+ISAP S
Sbjct: 79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS 138
Query: 92 ADAPMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKV-IHDNFEIVEGLMTTVHATTA 149
A V GVN Y+PS V+SNASCTTNCLAP+ V + + F + GLMTT+H+ TA
Sbjct: 139 GGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTA 198
Query: 150 TQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVV 209
TQKTVDG S K WR GR AA NIIP+ TGAAKAVG VIP+ GKLTGM+FRVP +VSVV
Sbjct: 199 TQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVV 258
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPL 269
DLT +D + EI A +K A++ + GILGYT++E+VS+DFI D SSI+D++A +
Sbjct: 259 DLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQN 318
Query: 270 N----GKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
N +F K++SWYDNE+GYS+RVVDL++++ +KD
Sbjct: 319 NLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASKD 354
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 496 bits (1280), Expect = e-179
Identities = 154/269 (57%), Positives = 189/269 (70%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG +I V +ERDP+++ W + G + VVESTG FT E A+ HL GAKKVIISAP+ +
Sbjct: 65 VVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 124
Query: 94 A-PMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
V GVN D YDP VISNASCTTNCLAP AKV+H+ F IV G+MTTVH+ T Q
Sbjct: 125 EDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 184
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
+ +D P K R R AA++IIP TGAAKAV V+P L GKL GMA RVP NVSVVDL
Sbjct: 185 RILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDL 243
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
L K+ T +E+ A +KAAAEG L GIL Y+E+ +VS D+ G T SS DA + + ++G
Sbjct: 244 VAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDG 303
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
K VK++SWYDNE GYS+RVVDL YI +K
Sbjct: 304 KMVKVVSWYDNETGYSHRVVDLAAYIASK 332
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 480 bits (1237), Expect = e-172
Identities = 127/270 (47%), Positives = 170/270 (62%), Gaps = 10/270 (3%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-A 92
VNG ++ SE D +PW + V+E TG +T +KA AH+ GAKKV+ISAP+
Sbjct: 68 RVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATG 127
Query: 93 DAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
D V N D S V+S ASCTTN LAP+AKV++D+F +VEGLMTT+HA T Q
Sbjct: 128 DLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQN 187
Query: 153 TVDGPSGKL-WRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
T D P K R R AA+NIIP +TGAAKA+GKVIP ++GKL G A RVPVA S+ +L
Sbjct: 188 TQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTEL 247
Query: 212 TVRLGK-DATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPL- 269
TV L K D T +++ +K A+ GYTEDE+VSSD +G T+ S+FDA +
Sbjct: 248 TVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMS 303
Query: 270 --NGKFVKLISWYDNEYGYSNRVVDLIKYI 297
+ + VK+ +WYDNE Y+ ++V + Y+
Sbjct: 304 VGDRQLVKVAAWYDNEMSYTAQLVRTLAYL 333
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 473 bits (1220), Expect = e-170
Identities = 122/268 (45%), Positives = 164/268 (61%), Gaps = 2/268 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V+G I V S+R+P ++PW G + V+E TGVF + A HL GAKKV+I+AP
Sbjct: 68 SVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKG 127
Query: 94 A-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
P +V GVN + Y + +ISNASCTTNCLAP KV+ F I++G MTT H+ T Q+
Sbjct: 128 DIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR 187
Query: 153 TVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 212
+D + R R A NI+P +TGAAKAV V+P L GKL G+A RVP NVSVVDL
Sbjct: 188 LLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLV 246
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
V++ K +E+ A + +A+ L GIL ++ +VS DF SS D+ + +
Sbjct: 247 VQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDD 306
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+I+WYDNE+GYS RVVDL + K
Sbjct: 307 MVKVIAWYDNEWGYSQRVVDLADIVANK 334
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 472 bits (1218), Expect = e-170
Identities = 142/269 (52%), Positives = 182/269 (67%), Gaps = 4/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V+G I + +DPK+IPWA++G V+ESTGVFT +KA AHL GGAKKVII+AP+
Sbjct: 63 YVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKG 122
Query: 94 A-PMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
V GVN +AYDPS +ISNASCTTN LAP+ KV+ + F + + LMTTVH+ T Q
Sbjct: 123 EDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQ 182
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
+ +D P K R R AA NIIP TGAAKA V+P+L G+ GMA RVP A S+ D+
Sbjct: 183 RLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDI 241
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
T L ++ T +E+ A +KAAAEGPL GIL YTEDE+V D + D HSSI DA+ G
Sbjct: 242 TALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTK-ALG 300
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
VK+ +WYDNE+GY+NRV DL++ + K
Sbjct: 301 NMVKVFAWYDNEWGYANRVADLVELVLRK 329
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 471 bits (1214), Expect = e-169
Identities = 133/269 (49%), Positives = 176/269 (65%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G I + + RDPK++PW G E V+E+TG F + EKA H+ GAKKVI++AP +
Sbjct: 68 LVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKN 127
Query: 94 A-PMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
V GVN D D + VISNASCTTNCLAP+ KV+ + F I GLMTTVHA T Q
Sbjct: 128 EDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQ 187
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
K +D P K R R Q+IIP TGAAKA+ KV+P LNGKL GMA RVP NVS+VDL
Sbjct: 188 KNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVSLVDL 246
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
V + +D T + I K A G L GI+ ++E+ +VS DF +THS+I D + + +
Sbjct: 247 VVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGD 306
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
+ VK+++WYDNE+GYS RVVDL+ + +
Sbjct: 307 RKVKVLAWYDNEWGYSRRVVDLVTLVVDE 335
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 471 bits (1214), Expect = e-168
Identities = 130/271 (47%), Positives = 175/271 (64%), Gaps = 4/271 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-- 91
VNG + + +R+P ++PW + + V+ESTGVF T E AS H+ GAKKV+I+AP
Sbjct: 68 TVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKA 127
Query: 92 ADAPMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT 150
+V GVN Y F VISNASCTTNCLAP+AKV+HDNF I++G MTT H+ T
Sbjct: 128 EGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLD 187
Query: 151 QKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210
Q+ +D + R R AA NI+P TGAAKAV VIP L GKL G+A RVP NVSVVD
Sbjct: 188 QRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVD 246
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
L V++ K +++ ++ A++ + GI+ Y++ +VSSDF G SSI D+ + ++
Sbjct: 247 LVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMD 306
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
G VK+I+WYDNE+GYS RVVDL + K
Sbjct: 307 GDLVKVIAWYDNEWGYSQRVVDLAELAARKS 337
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 469 bits (1209), Expect = e-168
Identities = 143/272 (52%), Positives = 185/272 (68%), Gaps = 9/272 (3%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASA----HLA-GGAKKVIIS 88
VV+G +I + +ERDPK++PWAK G + V+ESTGVF++ H+ GAKKVI++
Sbjct: 84 VVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILT 143
Query: 89 APSADA-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHAT 147
P+ D V GVN + K +SNASCTTNCLAPLAKV+H++F I +GLMTTVHA
Sbjct: 144 VPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAY 203
Query: 148 TATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVS 207
T Q+ +D P R R AA +IIP +TGAAKAVG V+P L GKL G + RVPV S
Sbjct: 204 TNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVPTGS 262
Query: 208 VVDLTVRLGK-DATYDEIKAKVKAAAEGP-LAGILGYTEDEVVSSDFIGDTHSSIFDAQA 265
+VDLTV+L K D T +EI + ++ A+E P L GILGYTED +VSSD G++HSSI D
Sbjct: 263 IVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGLE 322
Query: 266 GIPLNGKFVKLISWYDNEYGYSNRVVDLIKYI 297
+ L F K++SWYDNE+GYS RVVDL + +
Sbjct: 323 TMVLENGFAKILSWYDNEFGYSTRVVDLAQKL 354
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 466 bits (1202), Expect = e-167
Identities = 130/270 (48%), Positives = 175/270 (64%), Gaps = 4/270 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-- 91
VNG + + +R+P ++PW + + V+ESTGVF T E AS H+ GAKKV+I+AP
Sbjct: 68 TVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKG 127
Query: 92 ADAPMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT 150
+V GVN Y F VISNASCTTNCLAP+AKV+HDNF I++G MTT H+ T
Sbjct: 128 EGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLD 187
Query: 151 QKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210
Q+ +D + R R AA NI+P TGAAKAV VIP L GKL G+A RVP NVSVVD
Sbjct: 188 QRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTPNVSVVD 246
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
L V++ K +++ ++ A++ + GI+ Y++ +VSSDF G SSI D+ + ++
Sbjct: 247 LVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMD 306
Query: 271 GKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
G VK+I+WYDNE+GYS RVVDL + K
Sbjct: 307 GDLVKVIAWYDNEWGYSQRVVDLAELAARK 336
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 465 bits (1200), Expect = e-167
Identities = 131/277 (47%), Positives = 179/277 (64%), Gaps = 12/277 (4%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G +I V +++DP IPW G + V+E+TGVF E AS HL GGAKKVII+AP+ +
Sbjct: 66 VVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKN 125
Query: 94 A-PMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
V GVN + Y+P +ISNASCTTNCLAP KV+++ F + +G M TVHA T Q
Sbjct: 126 PDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQ 185
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
+ +D P K +R R AA NI+P TGAAKA+G+VIP L GKL G A RVPV + S++DL
Sbjct: 186 RLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPDGSLIDL 244
Query: 212 TVRLGK-DATYDEIKAKVKAAAEG-------PLAGILGYTEDEVVSSDFIGDTHSSIFDA 263
TV + K ++ +E+ K + AA+ L IL Y ED +VS+D +G+ HS+IFDA
Sbjct: 245 TVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFDA 304
Query: 264 QAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
+ V + +WYDNE+GYS R+ DL+ Y+ +
Sbjct: 305 PLTQ-VIDNLVHIAAWYDNEWGYSCRLRDLVIYLAER 340
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 459 bits (1183), Expect = e-164
Identities = 137/265 (51%), Positives = 175/265 (66%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G +I V +E DP +PW G ++V+ESTGVF EKA HL GAKKVII+AP+
Sbjct: 66 IVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKG 125
Query: 94 A-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
V G N D P +IS ASCTTN +AP+ KV+H+ F IV G++TTVH+ T Q+
Sbjct: 126 EDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQR 185
Query: 153 TVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 212
+D P K R R AA NIIP TGAAKAV V+P + GKL GMA RVP + S+ DLT
Sbjct: 186 VLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLT 244
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
V + K+ T +E+ A +K A EG L GI+GY ++ +VSSD IG T S IFDA + GK
Sbjct: 245 VLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGK 304
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
VK+ SWYDNEYGYSNRVVD ++ +
Sbjct: 305 LVKVASWYDNEYGYSNRVVDTLELL 329
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 436 bits (1123), Expect = e-155
Identities = 124/265 (46%), Positives = 173/265 (65%), Gaps = 2/265 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V I VH+ R+P ++PW + + +E TG+FT+ +KA+ HL GAK+VI+SAP+
Sbjct: 68 DVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADG 127
Query: 94 A-PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQK 152
A V GVN D VISNASCTTNCLAP+A+V++D I +G MTT+H+ T Q
Sbjct: 128 ADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIHSYTGDQP 187
Query: 153 TVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 212
T+D K R AA ++IP +TGAAKAVG V+P L GKL G+A RVP NVSVVDLT
Sbjct: 188 TLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPNVSVVDLT 246
Query: 213 VRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGK 272
++ T +E+ ++ AA G L GILGYT++++VS DF D+HSS+F ++G
Sbjct: 247 FIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQTKVMDGT 306
Query: 273 FVKLISWYDNEYGYSNRVVDLIKYI 297
V+++SWYDNE+G+S+R+ D +
Sbjct: 307 MVRILSWYDNEWGFSSRMSDTAVAL 331
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 417 bits (1075), Expect = e-148
Identities = 97/269 (36%), Positives = 149/269 (55%), Gaps = 3/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V + I V ER + +PW + G + V++ TGV+ + E AH+A GAKKV+ S P ++
Sbjct: 69 FVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSN 128
Query: 94 A--PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
V GVN D +++SNASCTTNC+ P+ K++ D + I G +TT+H+ Q
Sbjct: 129 DLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQ 188
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
+ +D L R R A+Q+IIP T A + + P N + +A RVP NV+ +DL
Sbjct: 189 QVIDAYHPDLRR-TRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVPTINVTAIDL 247
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
+V + K +E+ ++ AA+G GI+ YTE +VS DF D HS+I D
Sbjct: 248 SVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGA 307
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
+K + W DNE+G++NR++D + T
Sbjct: 308 HLIKTLVWCDNEWGFANRMLDTTLAMATV 336
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 413 bits (1063), Expect = e-146
Identities = 130/269 (48%), Positives = 167/269 (62%), Gaps = 4/269 (1%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VVNG+KI V + R+P +PW + V+E TG FTT EKA AH+ GGAKKVIISAP
Sbjct: 68 VVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGA 127
Query: 94 A--PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
V GVN + VISNASCTTNCLAPL K ++D + +GLMTTVHA T Q
Sbjct: 128 DVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQ 187
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 211
D L R R A ++IP TGAA AVG V+P L+GKL G A RVP NVS+VDL
Sbjct: 188 VLTDVYHEDLRR-ARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDL 246
Query: 212 TVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNG 271
+ ++ T +E+ +KAA+EG L GIL Y + +VS D+ D SS DA ++G
Sbjct: 247 SFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTK-VSG 305
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
+ VK+ SWYDNE+G+SNR++D + +
Sbjct: 306 RLVKVSSWYDNEWGFSNRMLDTTVALMSA 334
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 302 bits (775), Expect = e-102
Identities = 50/277 (18%), Positives = 84/277 (30%), Gaps = 34/277 (12%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+ I V D A+ V++ T + + G K + +
Sbjct: 60 LFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEKHE 114
Query: 94 AP--MFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQ 151
F N + SC T L K +HD+F I + V
Sbjct: 115 DIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPA 173
Query: 152 KTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVG-KVIPALNGKLTGMAFRVPVANVSVVD 210
+ GP IIP G V L+ + MA VP + +
Sbjct: 174 QVSKGPI-----------NAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHN 222
Query: 211 LTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN 270
+ V + + T D+I + IL ED + S+ I + + ++ +
Sbjct: 223 VMVEVEETPTVDDIIDVFEDTPR----VILISAEDGLTSTAEIMEYAKELGRSRNDLFEI 278
Query: 271 GKFVKLISWYDNEYGY----------SNRVVDLIKYI 297
+ + I+ DNE Y VD ++ I
Sbjct: 279 PVWRESITVVDNEIYYMQAVHQESDIVPENVDAVRAI 315
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 248 bits (635), Expect = 2e-81
Identities = 40/260 (15%), Positives = 73/260 (28%), Gaps = 22/260 (8%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V + E DI A+ VV+ + K I+
Sbjct: 61 VKLFEDAGIPVEGTILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGEKA 117
Query: 94 A---PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT 150
F + + + SC T L + I+ +I + + V
Sbjct: 118 KDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCRILYAINSIADIKKARIVLVRRAADP 176
Query: 151 QKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVD 210
GP N + + V V+P GK+ A VP + +
Sbjct: 177 NDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTTLMHMHT 229
Query: 211 LTVRLGKDATYDEIKAKVKAAAE-GPLAGILGYTEDEVV---SSDF---IGDTHSSIFDA 263
L V + D + D+I +K + G++ + D D + +
Sbjct: 230 LMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDLGRLRYDINELVVWE 289
Query: 264 QAGIPLNGKFVKLISWYDNE 283
+ I + + L+ E
Sbjct: 290 E-SINVLENEIFLMQAVHQE 308
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 217 bits (555), Expect = 2e-69
Identities = 43/245 (17%), Positives = 76/245 (31%), Gaps = 24/245 (9%)
Query: 48 PKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAP--MFVCGVNLDA 105
+ + +V++T + + G K + AD FV N +A
Sbjct: 70 AGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEA 129
Query: 106 YDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDG 165
+ SC T L I + + V +M A K R
Sbjct: 130 ALGK-NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTK----------RGP 178
Query: 166 RGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIK 225
A + + + V VIP + MAF VP + V + V L K T D++
Sbjct: 179 INAIKPTVEVPSHHGPDVQTVIP---INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVI 235
Query: 226 AKVKAAAEGPL----AGILGYTEDEVVSSDFIGDTHSSIFD---AQAGIPLNGKFVKLIS 278
+ L G + + D + +++++ + I + G + I
Sbjct: 236 DIFENTTRVLLFEKEKGFDSTAQIIEFARD-LHREWNNLYEIAVWKESINIKGNRLFYIQ 294
Query: 279 WYDNE 283
E
Sbjct: 295 AVHQE 299
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 156 bits (395), Expect = 1e-45
Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 21/261 (8%)
Query: 34 VVNGNKIAVHSERDPK---DIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90
V I E + ++ VV++T + +L +
Sbjct: 51 YVPQQSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGE 110
Query: 91 SADAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTA 149
A+ + + K I SC T L ++ ++ + T V
Sbjct: 111 KAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRRAAD 170
Query: 150 TQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVV 209
++ GP + +P+ AK V VI N + MA P + +
Sbjct: 171 QKEVKKGPI-----NSLVPDPATVPSHH--AKDVNSVIR--NLDIATMAVIAPTTLMHMH 221
Query: 210 DLTVRLGKDATYDEIKAKVKAAAEGPLA----GILGYTEDEVVSSDF---IGDTHSSIFD 262
+ + L +I + ++ L E V+ D D +
Sbjct: 222 FINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEVMIF 281
Query: 263 AQAGIPLNGKFVKLISWYDNE 283
+ I + V L+ E
Sbjct: 282 SD-SIYVKDDEVMLMYAVHQE 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 5e-04
Identities = 45/255 (17%), Positives = 72/255 (28%), Gaps = 102/255 (40%)
Query: 89 APSADAPMF-VCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIH-------DNFEIV--- 137
PS PM + + + ++ TN P K + N +V
Sbjct: 334 VPS---PMLSISNLTQEQVQ---DYVN----KTNSHLPAGKQVEISLVNGAKNL-VVSGP 382
Query: 138 ----EGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAA----------------- 176
GL T+ A PSG D Q+ IP +
Sbjct: 383 PQSLYGLNLTLRKAKA-------PSGL---D-----QSRIPFSERKLKFSNRFLPVASPF 427
Query: 177 -----TGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKD--ATYDEIKAK-V 228
A+ + K + N ++PV D G D I + V
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFD-----GSDLRVLSGSISERIV 480
Query: 229 KAAAEGPLAGILGYTED-EVVSSDFIGDTHSSIFD----AQAGI-PL-----NGKFVKLI 277
P+ E ++ TH I D +G+ L +G V++I
Sbjct: 481 DCIIRLPV--------KWE--TTTQFKATH--ILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 278 ------SWYDNEYGY 286
D++YG+
Sbjct: 529 VAGTLDINPDDDYGF 543
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 32.5 bits (74), Expect = 0.20
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 99 CGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGL 140
C V L YD I + S CLAP+ + H VEG+
Sbjct: 51 CTVMLSKYDRLQDKIIHFSANA-CLAPICTLHHVAVTTVEGI 91
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 31.0 bits (71), Expect = 0.47
Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 41/177 (23%)
Query: 85 VIISAPSA-----DAPMFVCGVNLDAYDPSFK----------VISNASCTTNCLAPLAKV 129
+++S S D P+ +N + + ++ N +CT ++ K
Sbjct: 103 IVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKP 162
Query: 130 IHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATG--------AAK 181
+ + + ++TT+ A V G +G NIIP G K
Sbjct: 163 LIEIATKSKIIITTLQA-------VSG-AGYNGISFMAIEGNIIPYIKGEEDKIAKELTK 214
Query: 182 AVGKV----IPALNGKLTGMAFRVPVAN---VSVVDLTVRLGKDATYDEIKAKVKAA 231
GK+ I N T + RVP + + + +EIK +K
Sbjct: 215 LNGKLENNQIIPANLDSTVTSIRVPTRVGHMGVI---NIVTNERINIEEIKKTLKNF 268
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 30.3 bits (69), Expect = 0.71
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 33 PVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA 92
P G + D + + + +V G T E G + I A S+
Sbjct: 45 PSFGGTTGTLQDAFDLEAL----KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASS 100
Query: 93 -----DAPMFVCGVNLDAYDPSF----KVISNASCTTNCLAPLAKVIHDNFEI 136
DA + + VN D + +CT + + + N +
Sbjct: 101 LRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLV 153
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 30.2 bits (69), Expect = 0.71
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 33 PVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA 92
P + +H D + + + V+ G T + A G K I A S
Sbjct: 44 PNFGKDAGMLHDAFDIESL----KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAAST 99
Query: 93 -----DAPMFVCGVNLDAYDPSF----KVISNASCTTNCLAPLAKVIHDNFEI 136
+A + + VNL K +CT + + +++ +
Sbjct: 100 LRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTVSLMLMALGGLYERGLV 152
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 29.9 bits (68), Expect = 1.0
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 33 PVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSA 92
P N+ + D+ + ++ G T + A G I A S+
Sbjct: 48 PSFAKNETTLKDATSIDDL----KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASS 103
Query: 93 -----DAPMFVCGVNLDAYDPSF----KVISNASCTTNCLAPLAKVIHDNFEI 136
DA + + VNL+ + K +CT + + + +
Sbjct: 104 LRMKDDAVIILDPVNLNVIKDALVNGTKNFIGGNCTVSLMLMALGGLFRENLV 156
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 27.9 bits (63), Expect = 4.6
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA 94
G + +ESTG +++ L K ++ AP
Sbjct: 258 GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGT 295
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 27.6 bits (62), Expect = 5.3
Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 43/178 (24%)
Query: 85 VIISAPSA-----DAPMFVCGVNLDAYDPSFK----------VISNASCTTNCLAPLAKV 129
+I S SA D P+ + VN D + +I+N +C+T C K
Sbjct: 109 LIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKP 168
Query: 130 IHDNFEIVEGLMTTVHATT-ATQKTVDGPSGKLWRDGRGAAQNIIPAATG--------AA 180
I D F + + T+ A + A V + N+IP +
Sbjct: 169 IMDKFGLEAVFIATMQAVSGAGYNGVPSMA---------ILDNLIPFIKNEEEKMQTESL 219
Query: 181 KAVGKV----IPALNGKLTGMAFRVPVAN---VSVVDLTVRLGKDATYDEIKAKVKAA 231
K +G + + N K++ RV V + S+ V+ + A +EIK +
Sbjct: 220 KLLGTLKDGKVELANFKISASCNRVAVIDGHTESI---FVKTKEGAEPEEIKEVMDKF 274
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 26.9 bits (59), Expect = 8.2
Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 30/158 (18%)
Query: 83 KKVIISAPSADAPMFVCGVNLDA--YDPSFKVISNASCTT----NCLAPLAKVIHDNFEI 136
++I P+A P V VNL+ + +++ T ++ +AKV +
Sbjct: 98 IRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHY----- 152
Query: 137 VEGLMTTVHATTATQKTVDGPSGKLWRDG-RGAAQNIIPAATGAAKAVGKVIPALNGKLT 195
+ GP + D I GAAK GK I +N
Sbjct: 153 -------AEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAK--GKAIIIMNPAEP 203
Query: 196 GMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAE 233
+ R V L A + A V +
Sbjct: 204 PLIMRDTV---------YVLSAAADQAAVAASVAEMVQ 232
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like
barrel, cell cycle, metal BIND binding,DNA replication;
HET: DNA BGC; 2.31A {Homo sapiens}
Length = 268
Score = 26.9 bits (59), Expect = 8.8
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 218 DATYDEIKAKVKAAAEGPLAGILGYTEDEVVS-SDFIGD 255
D+TY+++ K++ + +TED ++ + F+ +
Sbjct: 189 DSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVE 227
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 26.8 bits (60), Expect = 9.0
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 57 GAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPM 96
G + V+E GV T+++++ G VI+ +
Sbjct: 253 GVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKV 292
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 26.9 bits (60), Expect = 9.7
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 44 SERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS 91
+ +D+P +++ E+TG ++ LA ++ PS
Sbjct: 229 RQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPS 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,698,887
Number of extensions: 287424
Number of successful extensions: 744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 48
Length of query: 301
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 208
Effective length of database: 4,105,140
Effective search space: 853869120
Effective search space used: 853869120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)