RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6885
(301 letters)
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 267 bits (684), Expect = 1e-91
Identities = 139/164 (84%), Positives = 143/164 (87%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAAT 177
CTTNCLAPLAKVIHDNF IVEGLMTTVHA TATQKTVDGPSGKLWRDGRGA QNIIPA+T
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 178 GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLA 237
GAAKAVGKVIP LNGKLTGMAFRVP ANVSVVDLT RL K A YD+IK VK A+EGPL
Sbjct: 61 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120
Query: 238 GILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYD 281
GILGYTE +VVSSDF DTHSS FDA AGI LN FVKLISWYD
Sbjct: 121 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 261 bits (668), Expect = 3e-89
Identities = 93/164 (56%), Positives = 116/164 (70%), Gaps = 1/164 (0%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAAT 177
CTTNCLAP AKV+H+ F IV G+MTTVH+ T Q+ +D P L R R AA++IIP T
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRA-RAAAESIIPTTT 59
Query: 178 GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLA 237
GAAKAV V+P L GKL GMA RVP NVSVVDL L K+ T +E+ A +KAAAEG L
Sbjct: 60 GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELK 119
Query: 238 GILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYD 281
GIL Y+E+ +VS D+ G T SS DA + + ++GK VK++SWYD
Sbjct: 120 GILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 251 bits (642), Expect = 2e-85
Identities = 73/164 (44%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAAT 177
CTTNCLAP KV+ F I++G MTT H+ T Q+ +D + R R A NI+P +T
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTST 59
Query: 178 GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLA 237
GAAKAV V+P L GKL G+A RVP NVSVVDL V++ K +E+ A + +A+ L
Sbjct: 60 GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 119
Query: 238 GILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYD 281
GIL ++ +VS DF SS D+ + + VK+I+WYD
Sbjct: 120 GILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 242 bits (618), Expect = 8e-82
Identities = 79/164 (48%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Query: 117 SCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAA 176
SCTTNCLAPL K ++D + +GLMTTVHA T Q D L R R A ++IP
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYHEDLRR-ARSATMSMIPTK 59
Query: 177 TGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPL 236
TGAA AVG V+P L+GKL G A RVP NVS+VDL+ ++ T +E+ +KAA+EG L
Sbjct: 60 TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGEL 119
Query: 237 AGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWY 280
GIL Y + +VS D+ D SS DA ++G+ VK+ SWY
Sbjct: 120 KGILDYNTEPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWY 162
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 230 bits (587), Expect = 4e-77
Identities = 85/164 (51%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAAT 177
CTTN LAP+ KV+ + F + + LMTTVH+ T Q+ +D P L R R AA NIIP T
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRA-RAAAINIIPTTT 59
Query: 178 GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLA 237
GAAKA V+P+L G+ GMA RVP A S+ D+T L ++ T +E+ A +KAAAEGPL
Sbjct: 60 GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLK 119
Query: 238 GILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYD 281
GIL YTEDE+V D + D HSSI DA+ L G VK+ +WYD
Sbjct: 120 GILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL-GNMVKVFAWYD 162
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 220 bits (562), Expect = 3e-73
Identities = 96/169 (56%), Positives = 123/169 (72%), Gaps = 5/169 (2%)
Query: 117 SCTTNCLAPLAKV-IHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPA 175
SCTTNCLAP+ V + + F + GLMTT+H+ TATQKTVDG S K WR GR AA NIIP+
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 176 ATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGP 235
TGAAKAVG VIP+ GKLTGM+FRVP +VSVVDLT +D + EI A +K A++
Sbjct: 61 TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTY 120
Query: 236 LAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN----GKFVKLISWY 280
+ GILGYT++E+VS+DFI D SSI+D++A + N +F K++SWY
Sbjct: 121 MKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWY 169
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 141 bits (357), Expect = 2e-42
Identities = 61/97 (62%), Positives = 71/97 (73%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
V+NGN I + ERDP I W +GAEYVVESTGVFTT+EKA AHL GGAK+VIISAPSAD
Sbjct: 66 VINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD 125
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVI 130
APMFV GVN + YD S K+ISNAS + ++
Sbjct: 126 APMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162
Score = 30.3 bits (68), Expect = 0.19
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 272 KFVKLISWYDNEYGYSNRVVDLIKYIQTK 300
+K+IS NE+GYSNRVVDL+ ++ +K
Sbjct: 140 NSLKIISNASNEFGYSNRVVDLMAHMASK 168
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 141 bits (356), Expect = 4e-42
Identities = 64/103 (62%), Positives = 77/103 (74%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
VV+G KI V +E P++IPW+K+GAEY+VESTGVFTTIEKASAH GGAKKVIISAPSAD
Sbjct: 64 VVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD 123
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEI 136
APMFVCGVNL+ Y KV+SNAS + +I ++
Sbjct: 124 APMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 134 bits (338), Expect = 2e-39
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 33 PVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-S 91
V+G I V S+R+P ++PW G + V+E TGVF + A HL GAKKV+I+AP
Sbjct: 66 ISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK 125
Query: 92 ADAPMFVCGVNLDAYDPSFKVISNASCT---TNCLAPLAKVIHDNFE 135
D P +V GVN + Y + +ISNAS + + LA ++ + ++
Sbjct: 126 GDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKWQ 172
Score = 27.2 bits (60), Expect = 2.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 275 KLISWYDNEYGYSNRVVDLIKYIQTK 300
+IS NE+GYS RVVDL + K
Sbjct: 145 TIISNASNEWGYSQRVVDLADIVANK 170
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 126 bits (319), Expect = 1e-36
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+V+G +I V +E DP +PW G ++V+ESTGVF EKA HL GAKKVII+AP+
Sbjct: 66 IVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKG 125
Query: 94 APMFVC-GVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEI 136
+ V G N D P +IS AS + + ++
Sbjct: 126 EDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169
Score = 25.2 bits (55), Expect = 6.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 275 KLISWYDNEYGYSNRVVDLIKYI 297
+IS NEYGYSNRVVD ++ +
Sbjct: 144 TIISCASNEYGYSNRVVDTLELL 166
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 125 bits (316), Expect = 3e-36
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 29/184 (15%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAAT 177
C T L ++ ++ + T V ++ + G + PA
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKE---------VKKGPINSLVPDPATV 51
Query: 178 GAA--KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGP 235
+ K V VI L + MA P + + + + L +I + ++
Sbjct: 52 PSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIV 109
Query: 236 LAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDL-I 294
L D +++ + D S V D +
Sbjct: 110 LIS---------SKYDAEATAELVEVARDLKRD-RNDIPEVMIFSD-----SIYVKDDEV 154
Query: 295 KYIQ 298
+
Sbjct: 155 MLMY 158
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 123 bits (310), Expect = 2e-35
Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 22/171 (12%)
Query: 117 SCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAA 176
SC T L K +HD+F I + V + +G IIP
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPA-----------QVSKGPINAIIPNP 49
Query: 177 TGAAKAVGK-VIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGP 235
G V L+ + MA VP + ++ V + + T D+I +
Sbjct: 50 PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVI 109
Query: 236 LAGI---LGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNE 283
L L T + + + +G + + +F+ + + I+ DNE
Sbjct: 110 LISAEDGLTSTAEIMEYAKELGRSRNDLFE-------IPVWRESITVVDNE 153
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 121 bits (305), Expect = 1e-34
Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
+VNG KI V +ERDP ++ W + G + V E+TG+F T E A H+ GAKKV+++ PS D
Sbjct: 65 IVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD 124
Query: 94 -APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIH 131
PMFV G N D Y ++SNAS T + +I
Sbjct: 125 NTPMFVKGANFDKYAGQ-DIVSNASNETGYSNKVLDLIA 162
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 116 bits (292), Expect = 2e-32
Identities = 45/105 (42%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 35 VNGNKIAVHS-ERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP-SA 92
VNG++I +R+P D+PW K G EYV+ESTG+FT A HL GGA+KV+ISAP S
Sbjct: 80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASG 139
Query: 93 DAPMFVCGVNLDAYDPSF-KVISNASCTTNCLAPLAKVIHDNFEI 136
A V GVN Y+PS V+SNA + ++
Sbjct: 140 GAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHMASK 184
Score = 28.1 bits (62), Expect = 1.0
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 269 LNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD 301
N ++S DNE+GYS+RVVDL++++ +KD
Sbjct: 153 YNPSEHHVVSNADNEWGYSHRVVDLVRHMASKD 185
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 115 bits (288), Expect = 4e-32
Identities = 9/116 (7%), Positives = 33/116 (28%), Gaps = 6/116 (5%)
Query: 34 VVNGNKIAVHSERDPK---DIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90
V ++ + + + + A+ V++ T + + G K +
Sbjct: 52 VAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE 111
Query: 91 SADAP--MFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTT 143
+ F N + + + + + + ++ D ++ +
Sbjct: 112 KHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKA 167
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 114 bits (286), Expect = 7e-32
Identities = 51/109 (46%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS-A 92
VVNG +I V +ERDP+++ W + G + VVESTG FT E A+ HL GAKKVIISAP+
Sbjct: 65 VVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN 124
Query: 93 DAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGL 140
+ V GVN D YDP + VISNAS T + + + +GL
Sbjct: 125 EDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 106 bits (266), Expect = 7e-29
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 26 FFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKV 85
++ K++V +E+DP IPW K + V ESTGVF T E AS+HL GGAKKV
Sbjct: 57 VTHADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKV 116
Query: 86 IISAPSAD-APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEI 136
I+SAP D P++V G+N YD ++SNAS +V+ I
Sbjct: 117 IMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 103 bits (257), Expect = 1e-27
Identities = 12/132 (9%), Positives = 34/132 (25%), Gaps = 3/132 (2%)
Query: 14 SSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEK 73
D + ++ + + + +V++T +
Sbjct: 36 KPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKN 95
Query: 74 ASAHLAGGAKKVIISAPSADA--PMFVCGVNLDAYDPS-FKVISNASCTTNCLAPLAKVI 130
+ G K + AD FV N +A + + + + + ++
Sbjct: 96 KPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELA 155
Query: 131 HDNFEIVEGLMT 142
I + +
Sbjct: 156 DKWDSIKKTNKS 167
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 102 bits (255), Expect = 2e-27
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 13 FSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIE 72
D + P V+G I + +DPK+IPWA++G V+ESTGVFT +
Sbjct: 42 LKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDAD 101
Query: 73 KASAHLAGGAKKVIISAPSADAPM-FVCGVNLDAYDPS-FKVISNASCT---TNCLAPLA 127
KA AHL GGAKKVII+AP+ + V GVN +AYDPS +ISNAS N +A L
Sbjct: 102 KAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLV 161
Query: 128 KVIHD 132
+++
Sbjct: 162 ELVLR 166
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 101 bits (253), Expect = 6e-27
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 31 WPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAP 90
VVNG+KI V + R+P +PW + V+E TG FTT EKA AH+ GGAKKVIISAP
Sbjct: 65 SYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAP 124
Query: 91 SAD--APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATT 148
V GVN + VISNA + + ++ T A
Sbjct: 125 GGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLDTTVALM 170
Query: 149 A 149
+
Sbjct: 171 S 171
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 88.9 bits (220), Expect = 4e-22
Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 18/112 (16%)
Query: 47 DPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA---PMFVCGVNL 103
+ ++ VV++T + +L + I F N
Sbjct: 67 VAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGEKAEVADISFSALCNY 125
Query: 104 DAYDP--SFKVISNASCTTNCLAPL------------AKVIHDNFEIVEGLM 141
+ +V+S + + + ++ +++ I++G +
Sbjct: 126 NEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRITNESLGILKGYL 177
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 48.3 bits (115), Expect = 1e-07
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 13/115 (11%)
Query: 117 SCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAA 176
SC T L I + + V + + RG I P
Sbjct: 1 SCNTTGLVRTLSAIREYADYVYA-------------VMIRRAADPNDTKRGPINAIKPTV 47
Query: 177 TGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAA 231
+ V + + MAF VP + V + V L K T D++ +
Sbjct: 48 EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENT 102
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 27.7 bits (61), Expect = 0.97
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 53 WAKSGAEYVVESTGVFTTIEKASAHLAGGAKK-VIISAPSADAPMFVCGVNLDA--YDPS 109
+ ++V ++T ++ + +I P+A P V VNL+ +
Sbjct: 67 PEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLN 126
Query: 110 FKVISNASCTT----NCLAPLAKV 129
+++ A LA ++
Sbjct: 127 VNMVTYAGNLDIMTSAALATAERM 150
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 27.5 bits (60), Expect = 1.8
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT 150
C+T + + + + + +++T A +
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGA 33
>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 154
Score = 26.4 bits (57), Expect = 2.7
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEI 136
P+ V VN A D +I+ + N + +A+ +H+ +
Sbjct: 103 VPLVVPEVNAHALDAHNGIIACPNAAWNSV-QIAETLHERGLV 144
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 26.6 bits (58), Expect = 3.7
Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 16/139 (11%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTAT-QKTVDGPSGKLWRDGRGAAQNIIPAA 176
CT + + + N + + T A + + + +L ++
Sbjct: 2 CTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMR----ELLTQMGHLYGHVADEL 57
Query: 177 TGAAKAVGKVIPAL-----NGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAA 231
+ A+ + + +G+L F VP+A + + +L + +E K + +
Sbjct: 58 ATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAE-- 115
Query: 232 AEGPLAGILGYTEDEVVSS 250
IL + V
Sbjct: 116 ----TNKILNTSSVIPVDG 130
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 26.2 bits (57), Expect = 4.6
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATT-ATQKTVDGPSGKLWRDGRGAAQNIIPAA 176
CT + + +++ + T A + A + + +L +
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMR----ELISQMGVINDAVSSEL 57
Query: 177 TGAAKAVGKVIPAL-----NGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIK 225
A ++ + + +G F VP+A + + V+ + +E K
Sbjct: 58 ANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWK 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,117,763
Number of extensions: 49916
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 38
Length of query: 301
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,240,546
Effective search space: 267957936
Effective search space used: 267957936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)