Query psy6886
Match_columns 146
No_of_seqs 211 out of 1366
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 20:59:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 7.2E-60 1.6E-64 401.0 7.8 144 2-146 4-264 (361)
2 COG0057 GapA Glyceraldehyde-3- 100.0 1.5E-56 3.2E-61 376.2 7.8 144 1-146 1-247 (335)
3 PLN02237 glyceraldehyde-3-phos 100.0 9.8E-55 2.1E-59 377.1 8.1 143 2-146 76-324 (442)
4 PRK07403 glyceraldehyde-3-phos 100.0 1.1E-51 2.4E-56 349.2 7.6 144 1-146 1-249 (337)
5 PRK15425 gapA glyceraldehyde-3 100.0 1.1E-50 2.3E-55 342.5 8.0 144 2-146 3-246 (331)
6 PRK07729 glyceraldehyde-3-phos 100.0 4.8E-50 1E-54 339.8 7.5 143 2-146 3-247 (343)
7 PTZ00023 glyceraldehyde-3-phos 100.0 1.7E-49 3.7E-54 335.9 8.6 144 2-146 3-250 (337)
8 KOG0657|consensus 100.0 3.1E-50 6.8E-55 330.0 1.8 99 47-146 132-230 (285)
9 PTZ00353 glycosomal glyceralde 100.0 1.4E-48 3.1E-53 330.7 7.2 143 2-146 3-250 (342)
10 PLN02272 glyceraldehyde-3-phos 100.0 3.7E-47 8E-52 328.8 8.7 145 1-146 85-331 (421)
11 PLN03096 glyceraldehyde-3-phos 100.0 4.5E-47 9.8E-52 326.4 8.2 143 2-146 61-307 (395)
12 PRK08289 glyceraldehyde-3-phos 100.0 1.1E-46 2.4E-51 328.4 7.5 143 2-146 128-384 (477)
13 PRK13535 erythrose 4-phosphate 100.0 4.3E-46 9.3E-51 315.1 6.6 144 1-146 1-249 (336)
14 PLN02358 glyceraldehyde-3-phos 100.0 5.6E-45 1.2E-49 308.5 8.4 145 1-146 5-252 (338)
15 PRK08955 glyceraldehyde-3-phos 100.0 1.8E-44 4E-49 305.0 9.1 143 2-146 3-247 (334)
16 TIGR01534 GAPDH-I glyceraldehy 100.0 2.4E-44 5.2E-49 303.6 8.1 142 3-146 1-247 (327)
17 TIGR01532 E4PD_g-proteo D-eryt 100.0 2.3E-44 4.9E-49 303.4 6.3 142 3-146 1-247 (325)
18 PF02800 Gp_dh_C: Glyceraldehy 100.0 4.1E-36 8.8E-41 230.4 5.8 91 55-146 1-91 (157)
19 TIGR01546 GAPDH-II_archae glyc 100.0 1.8E-35 3.8E-40 250.2 6.1 128 4-146 1-224 (333)
20 PRK04207 glyceraldehyde-3-phos 99.9 4.7E-25 1E-29 186.7 5.5 88 46-146 136-227 (341)
21 PF00044 Gp_dh_N: Glyceraldehy 99.8 1.5E-22 3.4E-27 154.6 -2.0 121 2-138 1-125 (151)
22 smart00846 Gp_dh_N Glyceraldeh 99.7 6.9E-18 1.5E-22 128.5 1.4 121 2-138 1-124 (149)
23 PRK14874 aspartate-semialdehyd 99.3 9.2E-13 2E-17 111.2 3.7 98 46-145 125-250 (334)
24 TIGR01296 asd_B aspartate-semi 99.3 7.7E-13 1.7E-17 112.2 3.2 100 46-145 123-253 (339)
25 PRK08664 aspartate-semialdehyd 98.9 1.6E-09 3.4E-14 92.0 4.6 91 46-145 146-248 (349)
26 TIGR00978 asd_EA aspartate-sem 98.2 1.2E-06 2.5E-11 74.3 4.7 92 46-145 142-245 (341)
27 PRK06901 aspartate-semialdehyd 95.9 0.0088 1.9E-07 51.1 3.6 94 47-144 127-234 (322)
28 COG0136 Asd Aspartate-semialde 94.3 0.061 1.3E-06 46.2 4.3 97 46-143 129-248 (334)
29 PF01113 DapB_N: Dihydrodipico 94.3 0.012 2.6E-07 42.9 -0.0 30 2-32 1-34 (124)
30 PTZ00434 cytosolic glyceraldeh 93.3 0.03 6.5E-07 48.6 0.6 46 89-137 95-140 (361)
31 TIGR00036 dapB dihydrodipicoli 93.1 0.033 7.2E-07 45.8 0.6 31 1-32 1-35 (266)
32 KOG0657|consensus 91.2 0.25 5.4E-06 41.6 3.6 109 12-137 1-110 (285)
33 PRK13303 L-aspartate dehydroge 90.8 0.083 1.8E-06 43.3 0.4 29 1-30 1-32 (265)
34 PRK00048 dihydrodipicolinate r 90.6 0.095 2.1E-06 42.7 0.6 31 1-32 1-35 (257)
35 TIGR01745 asd_gamma aspartate- 89.4 0.39 8.5E-06 41.8 3.5 35 47-81 131-165 (366)
36 COG0289 DapB Dihydrodipicolina 88.9 0.15 3.3E-06 42.6 0.5 27 1-27 2-32 (266)
37 PTZ00353 glycosomal glyceralde 88.2 0.27 5.9E-06 42.4 1.6 84 51-139 38-130 (342)
38 PRK06728 aspartate-semialdehyd 87.7 0.79 1.7E-05 39.6 4.2 96 47-144 129-257 (347)
39 TIGR01921 DAP-DH diaminopimela 83.3 0.43 9.4E-06 40.9 0.5 31 1-32 3-36 (324)
40 PRK13304 L-aspartate dehydroge 81.6 0.57 1.2E-05 38.3 0.6 31 1-32 1-35 (265)
41 PF01408 GFO_IDH_MocA: Oxidore 80.6 0.61 1.3E-05 32.5 0.4 30 2-32 1-34 (120)
42 PRK08289 glyceraldehyde-3-phos 79.7 1.2 2.7E-05 40.1 2.1 107 25-137 129-263 (477)
43 PRK13302 putative L-aspartate 79.6 0.68 1.5E-05 38.2 0.4 30 2-32 7-40 (271)
44 PF02826 2-Hacid_dh_C: D-isome 73.9 1.1 2.3E-05 34.4 0.1 27 3-31 38-67 (178)
45 PRK06598 aspartate-semialdehyd 73.6 5.5 0.00012 34.7 4.4 35 47-81 132-166 (369)
46 PRK13301 putative L-aspartate 72.0 1.5 3.2E-05 36.8 0.4 30 2-32 3-37 (267)
47 PLN02272 glyceraldehyde-3-phos 69.5 3.1 6.8E-05 36.9 2.0 107 26-139 88-212 (421)
48 KOG0068|consensus 69.3 2.1 4.6E-05 37.5 0.9 27 4-32 149-177 (406)
49 cd01076 NAD_bind_1_Glu_DH NAD( 69.0 1.7 3.8E-05 35.0 0.3 30 2-32 32-63 (227)
50 PRK11579 putative oxidoreducta 68.3 2.2 4.8E-05 35.8 0.7 30 2-32 5-38 (346)
51 PRK10206 putative oxidoreducta 67.6 3.8 8.2E-05 34.6 2.1 31 1-32 1-36 (344)
52 PRK08040 putative semialdehyde 66.8 9 0.00019 32.9 4.2 96 47-144 129-248 (336)
53 PRK08410 2-hydroxyacid dehydro 65.5 2.2 4.8E-05 35.8 0.3 26 3-30 147-175 (311)
54 PRK06270 homoserine dehydrogen 64.8 1.7 3.6E-05 37.0 -0.7 30 1-31 2-43 (341)
55 PRK06487 glycerate dehydrogena 64.6 2.6 5.6E-05 35.5 0.5 27 3-31 150-179 (317)
56 PRK07729 glyceraldehyde-3-phos 62.7 2.9 6.2E-05 36.2 0.4 46 89-137 80-125 (343)
57 cd05211 NAD_bind_Glu_Leu_Phe_V 60.8 2.9 6.3E-05 33.5 0.1 30 2-32 24-55 (217)
58 TIGR01534 GAPDH-I glyceraldehy 59.6 4.6 9.9E-05 34.6 1.1 46 89-137 81-126 (327)
59 PRK06932 glycerate dehydrogena 57.4 3.9 8.4E-05 34.4 0.3 26 3-30 149-177 (314)
60 COG0111 SerA Phosphoglycerate 57.0 3.8 8.2E-05 34.9 0.2 25 3-27 144-170 (324)
61 PRK07403 glyceraldehyde-3-phos 54.7 7.9 0.00017 33.4 1.7 46 89-137 81-126 (337)
62 PLN02237 glyceraldehyde-3-phos 52.9 6 0.00013 35.4 0.7 46 89-137 156-201 (442)
63 PRK15409 bifunctional glyoxyla 52.0 3.3 7.2E-05 35.1 -1.0 25 3-27 147-174 (323)
64 cd05313 NAD_bind_2_Glu_DH NAD( 51.4 5.2 0.00011 33.1 0.1 29 2-31 39-69 (254)
65 COG1052 LdhA Lactate dehydroge 49.9 3.8 8.2E-05 34.9 -0.9 25 3-27 148-174 (324)
66 PRK07574 formate dehydrogenase 49.7 5.8 0.00013 34.6 0.2 27 3-30 194-222 (385)
67 PRK11790 D-3-phosphoglycerate 48.5 6.2 0.00013 34.5 0.2 24 3-27 153-179 (409)
68 PRK06392 homoserine dehydrogen 47.9 6.2 0.00013 33.7 0.0 30 2-32 1-40 (326)
69 PLN02928 oxidoreductase family 46.5 7.1 0.00015 33.3 0.2 26 3-30 161-189 (347)
70 PLN02306 hydroxypyruvate reduc 46.3 4.7 0.0001 35.1 -0.9 25 3-27 167-194 (386)
71 PRK06436 glycerate dehydrogena 45.7 7.2 0.00016 32.8 0.1 27 3-30 124-152 (303)
72 PRK13243 glyoxylate reductase; 45.4 7.3 0.00016 33.0 0.1 26 3-30 152-180 (333)
73 PLN02477 glutamate dehydrogena 44.0 8.2 0.00018 34.1 0.2 30 2-32 207-238 (410)
74 PRK08300 acetaldehyde dehydrog 43.6 9.4 0.0002 32.4 0.5 31 1-32 4-37 (302)
75 PF03446 NAD_binding_2: NAD bi 43.4 7.1 0.00015 29.2 -0.2 27 1-27 1-29 (163)
76 PRK08664 aspartate-semialdehyd 41.6 11 0.00023 32.1 0.5 28 1-29 3-34 (349)
77 TIGR03215 ac_ald_DH_ac acetald 40.9 11 0.00024 31.6 0.5 31 1-32 1-34 (285)
78 PLN02383 aspartate semialdehyd 40.8 20 0.00042 30.8 2.0 36 46-81 135-170 (344)
79 PLN03139 formate dehydrogenase 40.1 9.4 0.0002 33.4 -0.0 25 3-27 201-227 (386)
80 COG1614 CdhC CO dehydrogenase/ 39.2 25 0.00054 31.0 2.4 35 104-138 274-309 (470)
81 PRK09414 glutamate dehydrogena 37.8 11 0.00024 33.7 0.0 29 2-31 233-263 (445)
82 PRK08374 homoserine dehydrogen 37.4 8.7 0.00019 32.7 -0.6 30 1-31 2-43 (336)
83 PRK06349 homoserine dehydrogen 37.3 9.4 0.0002 33.4 -0.4 30 2-32 4-45 (426)
84 KOG0069|consensus 35.3 9 0.00019 33.1 -0.9 17 3-19 164-180 (336)
85 PRK15438 erythronate-4-phospha 34.3 13 0.00029 32.4 0.0 24 3-27 118-144 (378)
86 PRK00436 argC N-acetyl-gamma-g 33.7 17 0.00037 30.9 0.6 30 1-31 2-35 (343)
87 smart00517 PolyA C-terminal do 33.5 14 0.00031 24.5 0.0 20 116-135 18-37 (64)
88 COG1712 Predicted dinucleotide 33.4 16 0.00035 30.3 0.4 41 2-43 1-47 (255)
89 PRK08955 glyceraldehyde-3-phos 33.4 14 0.0003 31.8 -0.0 43 89-136 81-123 (334)
90 PF01118 Semialdhyde_dh: Semia 33.2 16 0.00034 26.0 0.2 26 3-29 1-30 (121)
91 PF11491 DUF3213: Protein of u 32.3 22 0.00048 25.0 0.8 15 3-17 28-42 (88)
92 COG0460 ThrA Homoserine dehydr 32.1 18 0.00038 31.3 0.4 31 1-32 3-45 (333)
93 TIGR01327 PGDH D-3-phosphoglyc 31.9 17 0.00036 32.8 0.2 27 3-30 140-168 (525)
94 PRK15469 ghrA bifunctional gly 30.4 17 0.00037 30.6 0.1 26 3-30 138-166 (312)
95 PF00208 ELFV_dehydrog: Glutam 29.3 15 0.00032 30.0 -0.5 29 2-31 33-63 (244)
96 PRK13581 D-3-phosphoglycerate 29.2 20 0.00043 32.4 0.2 26 3-30 142-170 (526)
97 cd01075 NAD_bind_Leu_Phe_Val_D 29.0 19 0.0004 28.2 0.0 25 3-27 30-56 (200)
98 PRK12480 D-lactate dehydrogena 29.0 19 0.00042 30.5 0.1 27 3-30 148-176 (330)
99 PRK00257 erythronate-4-phospha 27.3 22 0.00049 31.0 0.2 25 3-27 118-144 (381)
100 PRK06813 homoserine dehydrogen 27.3 24 0.00052 30.4 0.4 30 1-31 2-43 (346)
101 PRK14030 glutamate dehydrogena 24.8 26 0.00057 31.4 0.2 30 2-32 229-260 (445)
102 PF03447 NAD_binding_3: Homose 24.7 10 0.00022 26.6 -2.0 23 8-31 1-29 (117)
103 PRK13403 ketol-acid reductoiso 24.7 24 0.00053 30.5 -0.0 29 3-32 18-48 (335)
104 PF05132 RNA_pol_Rpc4: RNA pol 24.4 63 0.0014 23.6 2.2 18 10-27 67-84 (131)
105 PRK03659 glutathione-regulated 21.8 29 0.00062 31.8 -0.2 29 3-32 402-433 (601)
106 PF03969 AFG1_ATPase: AFG1-lik 21.5 66 0.0014 27.8 2.0 73 55-144 182-265 (362)
107 PRK03562 glutathione-regulated 21.5 30 0.00065 31.9 -0.1 26 3-29 402-429 (621)
108 PLN02358 glyceraldehyde-3-phos 20.9 46 0.00099 28.6 0.9 48 88-138 85-132 (338)
109 PRK08605 D-lactate dehydrogena 20.0 24 0.00053 29.8 -0.9 25 3-27 148-175 (332)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.2e-60 Score=400.96 Aligned_cols=144 Identities=53% Similarity=0.769 Sum_probs=134.3
Q ss_pred cceeEeccCceeeeeeec---C----CCceEEEEecCC-cchhhhhhhcc------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---Q----PCLRLVSMVSDV-LDVLYSELLLP------------------------------ 43 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~----~~~~vva~Ind~-~d~~y~~~~~~------------------------------ 43 (146)
+||||||||||||+|+|+ . +++|||| |||| +|++||+||||
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVA-INd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVA-VVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEE-EeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 699999999999999998 2 5799999 9997 99999999811
Q ss_pred -----------------------------------------------------------------------c-------c
Q psy6886 44 -----------------------------------------------------------------------R-------E 45 (146)
Q Consensus 44 -----------------------------------------------------------------------~-------~ 45 (146)
| .
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~Ii 162 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVV 162 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCcEE
Confidence 1 1
Q ss_pred CCCCccccchhHHHHHh-hhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCC
Q psy6886 46 PSFVTVSNSLLTLAKVI-HDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNG 124 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi-~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~G 124 (146)
+++|||||||||++|+| ||+|||++|+|||||+||++|+++|+|+++||||+|+|+|||||+|||||||++||+|||+|
T Consensus 163 SnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~G 242 (361)
T PTZ00434 163 SNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKG 242 (361)
T ss_pred ECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccccCC
Confidence 34569999999999999 89999999999999999999999999987999999999999999999999999999999999
Q ss_pred CcceEEEeeecCCeeEEEeEEC
Q psy6886 125 KLTGMAFRVPVANVSVVDLTVR 146 (146)
Q Consensus 125 k~~g~a~~VP~~~~s~~dlt~~ 146 (146)
|++|++||||++|||++||||+
T Consensus 243 Kl~G~a~RVPt~nvS~vDLt~~ 264 (361)
T PTZ00434 243 KLTGMSFRVPTPDVSVVDLTFR 264 (361)
T ss_pred ceeeEEEecccCcEeEEEEEEE
Confidence 9999999999999999999984
No 2
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-56 Score=376.22 Aligned_cols=144 Identities=53% Similarity=0.723 Sum_probs=135.4
Q ss_pred CcceeEeccCceeeeeeec---CC-CceEEEEecCCcchhhhhhh-----------------------------------
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QP-CLRLVSMVSDVLDVLYSELL----------------------------------- 41 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~-~~~vva~Ind~~d~~y~~~~----------------------------------- 41 (146)
|+||+|||||||||+|+|+ ++ ++|||| |||+.|++|++||
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVa-Ind~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVA-INDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEE-EecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 7899999999999999999 56 799999 9999999999998
Q ss_pred ----------------------------------------------------------------ccccCCCCccccchhH
Q psy6886 42 ----------------------------------------------------------------LPREPSFVTVSNSLLT 57 (146)
Q Consensus 42 ----------------------------------------------------------------~~~~~s~~cttnclaP 57 (146)
-++-+++|||||||+|
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap 159 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAP 159 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhHH
Confidence 1111467899999999
Q ss_pred HHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 58 LAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 58 l~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
++|+|+|+|||++|+|||||++|++|++.|+|| +||||+|+|++||||+|||+|+++++|+|+|+||++|+||||||++
T Consensus 160 ~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~~ 238 (335)
T COG0057 160 VAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPN 238 (335)
T ss_pred HHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCCC
Confidence 999999999999999999999999999999997 4699999999999999999999999999999999999999999999
Q ss_pred eeEEEeEEC
Q psy6886 138 VSVVDLTVR 146 (146)
Q Consensus 138 ~s~~dlt~~ 146 (146)
+|++||++.
T Consensus 239 vs~~dl~v~ 247 (335)
T COG0057 239 VSVVDLTVE 247 (335)
T ss_pred cEEEEEEEE
Confidence 999999873
No 3
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=9.8e-55 Score=377.11 Aligned_cols=143 Identities=45% Similarity=0.637 Sum_probs=134.0
Q ss_pred cceeEeccCceeeeeeec---C--CCceEEEEecCCcchhhhhhh-----------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---Q--PCLRLVSMVSDVLDVLYSELL----------------------------------- 41 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~--~~~~vva~Ind~~d~~y~~~~----------------------------------- 41 (146)
+||||||||||||+|+|+ . +++|||| |||+.|++||+||
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVa-INd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~ 154 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV-VNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNR 154 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEE-ECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcC
Confidence 799999999999999998 3 6899999 9999999999998
Q ss_pred -------------------------------------------------------------cc-----ccCCCCccccch
Q psy6886 42 -------------------------------------------------------------LP-----REPSFVTVSNSL 55 (146)
Q Consensus 42 -------------------------------------------------------------~~-----~~~s~~cttncl 55 (146)
+. .-.+++||||||
T Consensus 155 dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNcL 234 (442)
T PLN02237 155 DPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCL 234 (442)
T ss_pred CchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHHHH
Confidence 10 013567999999
Q ss_pred hHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeec
Q psy6886 56 LTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPV 135 (146)
Q Consensus 56 aPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~ 135 (146)
||++|+||++|||++|+|||+|++|++|+++|+|+ +||||+|+|++||||+|||||||+++|+|||+||++|++||||+
T Consensus 235 APvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RVPt 313 (442)
T PLN02237 235 APFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPT 313 (442)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEEEeccc
Confidence 99999999999999999999999999999999995 79999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeEEC
Q psy6886 136 ANVSVVDLTVR 146 (146)
Q Consensus 136 ~~~s~~dlt~~ 146 (146)
+|||++||||+
T Consensus 314 ~nvS~vDLt~~ 324 (442)
T PLN02237 314 PNVSVVDLVVN 324 (442)
T ss_pred CCceEEEEEEE
Confidence 99999999984
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-51 Score=349.18 Aligned_cols=144 Identities=48% Similarity=0.696 Sum_probs=134.9
Q ss_pred CcceeEeccCceeeeeeec---C--CCceEEEEecCCcchhhhhhh----------------------------------
Q psy6886 1 MSKIGINGFGRIGLNNLNS---Q--PCLRLVSMVSDVLDVLYSELL---------------------------------- 41 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~--~~~~vva~Ind~~d~~y~~~~---------------------------------- 41 (146)
|+||||||||||||+++|+ . ++++||| |||+.|++||+||
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vva-ind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVA-INDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEE-ecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 8999999999999999997 3 5899999 9999999999998
Q ss_pred -------------------------------------------------------------cc-----ccCCCCccccch
Q psy6886 42 -------------------------------------------------------------LP-----REPSFVTVSNSL 55 (146)
Q Consensus 42 -------------------------------------------------------------~~-----~~~s~~cttncl 55 (146)
+. .-.+++||||||
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~L 159 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCL 159 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHH
Confidence 11 013567999999
Q ss_pred hHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeec
Q psy6886 56 LTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPV 135 (146)
Q Consensus 56 aPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~ 135 (146)
+|++|+||++|||++|+|||+|++|++|+++|+|+ +|||++|+|++||||++||++|++++++|+|+||++|++||||+
T Consensus 160 ap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt 238 (337)
T PRK07403 160 APIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPT 238 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEecc
Confidence 99999999999999999999999999999999996 79999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeEEC
Q psy6886 136 ANVSVVDLTVR 146 (146)
Q Consensus 136 ~~~s~~dlt~~ 146 (146)
+++|++||+++
T Consensus 239 ~~vs~~dl~v~ 249 (337)
T PRK07403 239 PNVSVVDLVVQ 249 (337)
T ss_pred CCcEEEEEEEE
Confidence 99999999974
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.1e-50 Score=342.50 Aligned_cols=144 Identities=65% Similarity=0.953 Sum_probs=135.7
Q ss_pred cceeEeccCceeeeeeec---CCCceEEEEecCCcchhhhhhhcc-----------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---QPCLRLVSMVSDVLDVLYSELLLP----------------------------------- 43 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~~~~~vva~Ind~~d~~y~~~~~~----------------------------------- 43 (146)
+||||||||||||+++|+ .+++|||| |||+.|++||+||||
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vva-iNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVA-INDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEE-EecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 799999999999999998 67899999 999999999999911
Q ss_pred --------------------------------------------------------------ccCCCCccccchhHHHHH
Q psy6886 44 --------------------------------------------------------------REPSFVTVSNSLLTLAKV 61 (146)
Q Consensus 44 --------------------------------------------------------------~~~s~~cttnclaPl~kv 61 (146)
.-.+++||||||+|++|+
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~IISnaSCtTn~Lapvlk~ 161 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKV 161 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCCCCEEECCCcHHHHHHHHHHH
Confidence 113567999999999999
Q ss_pred hhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCeeEE
Q psy6886 62 IHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVV 141 (146)
Q Consensus 62 i~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~s~~ 141 (146)
||++|||++|+|||+|++|++|+++|+|++++||++|++++||||++||++++++|++|+|+||++|+++|||++++|++
T Consensus 162 L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~gs~~ 241 (331)
T PRK15425 162 INDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 241 (331)
T ss_pred HHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccCeEEE
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EeEEC
Q psy6886 142 DLTVR 146 (146)
Q Consensus 142 dlt~~ 146 (146)
||+++
T Consensus 242 dltv~ 246 (331)
T PRK15425 242 DLTVR 246 (331)
T ss_pred EEEEE
Confidence 99974
No 6
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.8e-50 Score=339.78 Aligned_cols=143 Identities=45% Similarity=0.663 Sum_probs=133.8
Q ss_pred cceeEeccCceeeeeeec---CCCceEEEEecCCcchhhhhhhcc-----------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---QPCLRLVSMVSDVLDVLYSELLLP----------------------------------- 43 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~~~~~vva~Ind~~d~~y~~~~~~----------------------------------- 43 (146)
+||||||||||||+++|+ .+++|+|| |||+.|++||+||||
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vva-INd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVA-INASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEE-ecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 699999999999999998 67899999 999999999999911
Q ss_pred ---------------------------------------------------------c-------cCCCCccccchhHHH
Q psy6886 44 ---------------------------------------------------------R-------EPSFVTVSNSLLTLA 59 (146)
Q Consensus 44 ---------------------------------------------------------~-------~~s~~cttnclaPl~ 59 (146)
| -++++||||||+|++
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~Lap~l 161 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVV 161 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHHHHH
Confidence 0 034579999999999
Q ss_pred HHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCee
Q psy6886 60 KVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVS 139 (146)
Q Consensus 60 kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~s 139 (146)
|+||++|||++|+|||+|++|++|+++|+|+ +|||++|++++||||++||+++++++|+|+|+||++|++||||++++|
T Consensus 162 k~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~~~s 240 (343)
T PRK07729 162 KVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVS 240 (343)
T ss_pred HHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeecCeE
Confidence 9999999999999999999999999999995 799999999999999999999999999999999999999999999999
Q ss_pred EEEeEEC
Q psy6886 140 VVDLTVR 146 (146)
Q Consensus 140 ~~dlt~~ 146 (146)
++||+++
T Consensus 241 ~~dltv~ 247 (343)
T PRK07729 241 LVDLVVD 247 (343)
T ss_pred EEEEEEE
Confidence 9999974
No 7
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-49 Score=335.91 Aligned_cols=144 Identities=61% Similarity=0.883 Sum_probs=134.6
Q ss_pred cceeEeccCceeeeeeec---CCCceEEEEecCC-cchhhhhhhccc---------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV-LDVLYSELLLPR--------------------------------- 44 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~~~~~vva~Ind~-~d~~y~~~~~~~--------------------------------- 44 (146)
+||||||||||||+|+|+ .+++++|| |||+ .|++||+|||||
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vva-iNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp 81 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVA-INDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP 81 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEE-ecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence 699999999999999998 67899999 9997 899999999110
Q ss_pred -----------------------------------------------------------------cCCCCccccchhHHH
Q psy6886 45 -----------------------------------------------------------------EPSFVTVSNSLLTLA 59 (146)
Q Consensus 45 -----------------------------------------------------------------~~s~~cttnclaPl~ 59 (146)
-.+++||||||+|++
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap~l 161 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLA 161 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHHHH
Confidence 146779999999999
Q ss_pred HHhhhceeeeeeeeeeeeccCccccccCCCC--CCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 60 KVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 60 kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~--~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
|+||++|||++|+|||+|++|++|.++|+|+ ++|||++|++++||||++||++++++|++|+|+||++++++|||+++
T Consensus 162 k~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt~~ 241 (337)
T PTZ00023 162 KVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVPD 241 (337)
T ss_pred HHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecccC
Confidence 9999999999999999999999999999986 58999999999999999999999999999999999999999999999
Q ss_pred eeEEEeEEC
Q psy6886 138 VSVVDLTVR 146 (146)
Q Consensus 138 ~s~~dlt~~ 146 (146)
+|++||+++
T Consensus 242 ~s~~dltv~ 250 (337)
T PTZ00023 242 VSVVDLTCK 250 (337)
T ss_pred eEEEEEEEE
Confidence 999999974
No 8
>KOG0657|consensus
Probab=100.00 E-value=3.1e-50 Score=330.03 Aligned_cols=99 Identities=80% Similarity=1.112 Sum_probs=96.3
Q ss_pred CCCccccchhHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCc
Q psy6886 47 SFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKL 126 (146)
Q Consensus 47 s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~ 126 (146)
+++||||||||++|+|||+|||+||+|||+|++|++|+++|+|+.++||++|+|.|||||+|||++||++|||||||||+
T Consensus 132 nascttnclaPlaKVi~d~fgI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKL 211 (285)
T KOG0657|consen 132 NASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKL 211 (285)
T ss_pred chhhhhccccchhheeccccccccccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCcc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeecCCeeEEEeEEC
Q psy6886 127 TGMAFRVPVANVSVVDLTVR 146 (146)
Q Consensus 127 ~g~a~~VP~~~~s~~dlt~~ 146 (146)
+||+||||++ +|++||+|+
T Consensus 212 tGMAf~Vpt~-vsVvdl~~~ 230 (285)
T KOG0657|consen 212 TGMAFRVPTP-VSVVDLTCH 230 (285)
T ss_pred ccceecCCcc-eEeeeeecc
Confidence 9999999999 999999984
No 9
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-48 Score=330.66 Aligned_cols=143 Identities=30% Similarity=0.547 Sum_probs=132.3
Q ss_pred cceeEeccCceeeeeeec---CCCceEEEEecCC-cchhhhhhhcccc--------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV-LDVLYSELLLPRE-------------------------------- 45 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~~~~~vva~Ind~-~d~~y~~~~~~~~-------------------------------- 45 (146)
+||||||||||||+|+|+ .+++|||| |||+ .|++||+|||||+
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~iva-iNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~ 81 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVA-VNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKH 81 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEE-ecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecC
Confidence 699999999999999998 67899999 9997 8999999992211
Q ss_pred -------------------------------------------------------------------CCCCccccchhHH
Q psy6886 46 -------------------------------------------------------------------PSFVTVSNSLLTL 58 (146)
Q Consensus 46 -------------------------------------------------------------------~s~~cttnclaPl 58 (146)
.+++||||||+|+
T Consensus 82 dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lapv 161 (342)
T PTZ00353 82 DLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPV 161 (342)
T ss_pred CcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHHH
Confidence 3567999999999
Q ss_pred HHHhhhceeeeeeeeeeeeccCccccccCCCC--CCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecC
Q psy6886 59 AKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVA 136 (146)
Q Consensus 59 ~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~--~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~ 136 (146)
+|+||++|||++|+|||+|+|+ .|...|+|+ ++|||++|+|++||||++||++++++|++|+|+||++|+++|||++
T Consensus 162 lkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt~ 240 (342)
T PTZ00353 162 IRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVK 240 (342)
T ss_pred HHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEcccc
Confidence 9999999999999999999998 788888876 4899999999999999999999999999999999999999999999
Q ss_pred CeeEEEeEEC
Q psy6886 137 NVSVVDLTVR 146 (146)
Q Consensus 137 ~~s~~dlt~~ 146 (146)
++|++||+++
T Consensus 241 ~vs~vdltv~ 250 (342)
T PTZ00353 241 KGCAIDMLVR 250 (342)
T ss_pred CeEEEEEEEE
Confidence 9999999984
No 10
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.7e-47 Score=328.79 Aligned_cols=145 Identities=63% Similarity=0.919 Sum_probs=135.5
Q ss_pred CcceeEeccCceeeeeeec---CCCceEEEEecCC-cchhhhhhhccc--------------------------------
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV-LDVLYSELLLPR-------------------------------- 44 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~~~~vva~Ind~-~d~~y~~~~~~~-------------------------------- 44 (146)
|+||||||||||||+|+|+ .++++||| |||| .|++||+|||||
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vva-INdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSRDDIEVVA-VNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhcCCcEEEE-ecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 5799999999999999998 46899999 9998 999999999221
Q ss_pred ------------------------------------------------------------------cCCCCccccchhHH
Q psy6886 45 ------------------------------------------------------------------EPSFVTVSNSLLTL 58 (146)
Q Consensus 45 ------------------------------------------------------------------~~s~~cttnclaPl 58 (146)
-.+++||||||+|+
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~ 243 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 243 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHH
Confidence 13566999999999
Q ss_pred HHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCe
Q psy6886 59 AKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANV 138 (146)
Q Consensus 59 ~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~ 138 (146)
+|+||++|||++|+|||+|++|++|+++|++++++||++|++++||||++||++++++|++|+|+||++++++|||++++
T Consensus 244 lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~g 323 (421)
T PLN02272 244 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 323 (421)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCce
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred eEEEeEEC
Q psy6886 139 SVVDLTVR 146 (146)
Q Consensus 139 s~~dlt~~ 146 (146)
|++||+++
T Consensus 324 s~~dltv~ 331 (421)
T PLN02272 324 SVVDLTCR 331 (421)
T ss_pred EEEEEEEE
Confidence 99999974
No 11
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.5e-47 Score=326.36 Aligned_cols=143 Identities=45% Similarity=0.663 Sum_probs=133.4
Q ss_pred cceeEeccCceeeeeeec---C--CCceEEEEecCCcchhhhhhhcccc-------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---Q--PCLRLVSMVSDVLDVLYSELLLPRE------------------------------- 45 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~--~~~~vva~Ind~~d~~y~~~~~~~~------------------------------- 45 (146)
+||+|||||||||.++|+ . +.+++|| |||+.|++|++|||+|+
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evva-INd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~ 139 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVA-INDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDR 139 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEE-EcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcC
Confidence 699999999999999998 3 6899999 99999999999983321
Q ss_pred --------------------------------------------------------------------CCCCccccchhH
Q psy6886 46 --------------------------------------------------------------------PSFVTVSNSLLT 57 (146)
Q Consensus 46 --------------------------------------------------------------------~s~~cttnclaP 57 (146)
.+++||||||||
T Consensus 140 dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LAp 219 (395)
T PLN03096 140 NPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAP 219 (395)
T ss_pred CcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHHHH
Confidence 245699999999
Q ss_pred HHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 58 LAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 58 l~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
++|+||++|||++|+|||+|++|++|+++|+|+ +|||++|++++||||++||++++++|++|+|+||++++++|||+++
T Consensus 220 ~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~ 298 (395)
T PLN03096 220 FVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPN 298 (395)
T ss_pred HHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccccc
Confidence 999999999999999999999999999999985 7999999999999999999999999999999999999999999999
Q ss_pred eeEEEeEEC
Q psy6886 138 VSVVDLTVR 146 (146)
Q Consensus 138 ~s~~dlt~~ 146 (146)
+|++||+++
T Consensus 299 gs~~dltv~ 307 (395)
T PLN03096 299 VSVVDLVVQ 307 (395)
T ss_pred eEEEEEEEE
Confidence 999999974
No 12
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-46 Score=328.43 Aligned_cols=143 Identities=38% Similarity=0.509 Sum_probs=132.1
Q ss_pred cceeEeccCceeeeeeec---C----CCceEEEEec----CCcchhhhhhhcccc-------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---Q----PCLRLVSMVS----DVLDVLYSELLLPRE------------------------- 45 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~----~~~~vva~In----d~~d~~y~~~~~~~~------------------------- 45 (146)
.||+|||||||||+++|+ . +++++|| || |..|+++++|||||+
T Consensus 128 ~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvA-In~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~ 206 (477)
T PRK08289 128 RDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRA-IVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNY 206 (477)
T ss_pred ceEEEECCCHHHHHHHHHHHhccCCCCCeEEEE-EecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEE
Confidence 389999999999999998 3 5899999 94 679999999983321
Q ss_pred ------------------------------------------------------------------------------CC
Q psy6886 46 ------------------------------------------------------------------------------PS 47 (146)
Q Consensus 46 ------------------------------------------------------------------------------~s 47 (146)
++
T Consensus 207 I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IISn 286 (477)
T PRK08289 207 IQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSA 286 (477)
T ss_pred EEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEEC
Confidence 24
Q ss_pred CCccccchhHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcc
Q psy6886 48 FVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLT 127 (146)
Q Consensus 48 ~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~ 127 (146)
+|||||||+|++|+||++|||++|+|||+|++|++|+++|+++ ++||++|+|++||||++||++++++|++|+|+||++
T Consensus 287 ASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKlt 365 (477)
T PRK08289 287 ASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLT 365 (477)
T ss_pred CccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCcEE
Confidence 6799999999999999999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred eEEEeeecCCeeEEEeEEC
Q psy6886 128 GMAFRVPVANVSVVDLTVR 146 (146)
Q Consensus 128 g~a~~VP~~~~s~~dlt~~ 146 (146)
|++||||++++|++||+++
T Consensus 366 g~avRVPt~nvS~vdLtv~ 384 (477)
T PRK08289 366 GNAIRVPTPNVSMAILNLN 384 (477)
T ss_pred EEEEEeccccEEEEEEEEE
Confidence 9999999999999999974
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-46 Score=315.14 Aligned_cols=144 Identities=31% Similarity=0.533 Sum_probs=134.1
Q ss_pred CcceeEeccCceeeeeeec---C---CCceEEEEecCCcchhhhhhhcccc-----------------------------
Q psy6886 1 MSKIGINGFGRIGLNNLNS---Q---PCLRLVSMVSDVLDVLYSELLLPRE----------------------------- 45 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~---~~~~vva~Ind~~d~~y~~~~~~~~----------------------------- 45 (146)
|+||||||||||||.++|+ + +++++|| |||+.|++||+|||||+
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vva-ind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVA-INELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEE-ecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 7899999999999999998 2 4799999 99999999999994321
Q ss_pred ----------------------------------------------------------------------CCCCccccch
Q psy6886 46 ----------------------------------------------------------------------PSFVTVSNSL 55 (146)
Q Consensus 46 ----------------------------------------------------------------------~s~~cttncl 55 (146)
.+++||||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~L 159 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCI 159 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHH
Confidence 2345999999
Q ss_pred hHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeec
Q psy6886 56 LTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPV 135 (146)
Q Consensus 56 aPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~ 135 (146)
+|++|+||++|||++|+|||+|++|++|+++|+++ ++||++|++++||||++||++++++|++|+|+||++++++|||+
T Consensus 160 ap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv 238 (336)
T PRK13535 160 IPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPT 238 (336)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCc
Confidence 99999999999999999999999999999999985 79999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeEEC
Q psy6886 136 ANVSVVDLTVR 146 (146)
Q Consensus 136 ~~~s~~dlt~~ 146 (146)
+++|++||+++
T Consensus 239 ~~gs~~dl~v~ 249 (336)
T PRK13535 239 INVTAIDLSVT 249 (336)
T ss_pred cCcEEEEEEEE
Confidence 99999999974
No 14
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=5.6e-45 Score=308.55 Aligned_cols=145 Identities=60% Similarity=0.866 Sum_probs=135.8
Q ss_pred CcceeEeccCceeeeeeec---CCCceEEEEecCC-cchhhhhhhcccc-------------------------------
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV-LDVLYSELLLPRE------------------------------- 45 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~~~~vva~Ind~-~d~~y~~~~~~~~------------------------------- 45 (146)
++||||||||||||+++|+ .+++++|| |||+ .|++|++|||||+
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velva-I~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVA-VNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEE-EeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 3799999999999999998 68999999 9998 9999999992211
Q ss_pred --------------------------------------------------------------------CCCCccccchhH
Q psy6886 46 --------------------------------------------------------------------PSFVTVSNSLLT 57 (146)
Q Consensus 46 --------------------------------------------------------------------~s~~cttnclaP 57 (146)
.+++||||||+|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 345699999999
Q ss_pred HHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 58 LAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 58 l~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
++|+||++|||++|+|||+|++|++|+++|+|++++||++|++++||||++||++++++|++|+|+||++|+++|||+++
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~ 243 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVD 243 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcC
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred eeEEEeEEC
Q psy6886 138 VSVVDLTVR 146 (146)
Q Consensus 138 ~s~~dlt~~ 146 (146)
+|++||+++
T Consensus 244 gs~~dl~v~ 252 (338)
T PLN02358 244 VSVVDLTVR 252 (338)
T ss_pred eeEEEEEEE
Confidence 999999974
No 15
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.8e-44 Score=305.00 Aligned_cols=143 Identities=40% Similarity=0.599 Sum_probs=133.9
Q ss_pred cceeEeccCceeeeeeec---CCCceEEEEecCC-cchhhhhhh------------------------------------
Q psy6886 2 SKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV-LDVLYSELL------------------------------------ 41 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~~~~~vva~Ind~-~d~~y~~~~------------------------------------ 41 (146)
+||||||||||||+++|+ ++++++|+ +||+ .|++||+||
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~iva-ind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~ 81 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQ-INDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI 81 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEE-ecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence 799999999999999998 78899999 9997 899999998
Q ss_pred ---------------------------------------------------------ccc-----cCCCCccccchhHHH
Q psy6886 42 ---------------------------------------------------------LPR-----EPSFVTVSNSLLTLA 59 (146)
Q Consensus 42 ---------------------------------------------------------~~~-----~~s~~cttnclaPl~ 59 (146)
+.. -.+++||||||+|++
T Consensus 82 ~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~Lap~l 161 (334)
T PRK08955 82 ADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVV 161 (334)
T ss_pred hhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHHHHHH
Confidence 110 035679999999999
Q ss_pred HHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCee
Q psy6886 60 KVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVS 139 (146)
Q Consensus 60 kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~s 139 (146)
|+||++|||++++|||+|++|.+|+++|+|+ +|||++|++++||||++||++++++|++|+|+||++++++|||++++|
T Consensus 162 k~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv~~gs 240 (334)
T PRK08955 162 KVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLANAS 240 (334)
T ss_pred HHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEeccCCeE
Confidence 9999999999999999999999999999986 699999999999999999999999999999999999999999999999
Q ss_pred EEEeEEC
Q psy6886 140 VVDLTVR 146 (146)
Q Consensus 140 ~~dlt~~ 146 (146)
++||+++
T Consensus 241 ~~dl~v~ 247 (334)
T PRK08955 241 LTDCVFE 247 (334)
T ss_pred EEEEEEE
Confidence 9999974
No 16
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.4e-44 Score=303.55 Aligned_cols=142 Identities=54% Similarity=0.788 Sum_probs=132.4
Q ss_pred ceeEeccCceeeeeeec---C--CCceEEEEecCCcchhhhhhhcccc--------------------------------
Q psy6886 3 KIGINGFGRIGLNNLNS---Q--PCLRLVSMVSDVLDVLYSELLLPRE-------------------------------- 45 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~--~~~~vva~Ind~~d~~y~~~~~~~~-------------------------------- 45 (146)
||||||||||||+++|+ . ++++||| |||+.|++||+|||||+
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~iva-ind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVA-INDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEE-EecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 79999999999999998 3 5799999 99999999999992211
Q ss_pred --------------------------------------------------------------------CCCCccccchhH
Q psy6886 46 --------------------------------------------------------------------PSFVTVSNSLLT 57 (146)
Q Consensus 46 --------------------------------------------------------------------~s~~cttnclaP 57 (146)
.+++||||||+|
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap 159 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAP 159 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHH
Confidence 346799999999
Q ss_pred HHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 58 LAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 58 l~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
++|+||++|||++++|||+|++|++|+++|+|+ ++||++|++++||||++||++++++|++|+|+||++++++|||+++
T Consensus 160 ~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~ 238 (327)
T TIGR01534 160 LAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 238 (327)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccC
Confidence 999999999999999999999999999999986 7999999999999999999999999999999999999999999999
Q ss_pred eeEEEeEEC
Q psy6886 138 VSVVDLTVR 146 (146)
Q Consensus 138 ~s~~dlt~~ 146 (146)
+|++||+++
T Consensus 239 gs~~dl~v~ 247 (327)
T TIGR01534 239 VSLVDLVLN 247 (327)
T ss_pred eEEEEEEEE
Confidence 999999974
No 17
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=2.3e-44 Score=303.42 Aligned_cols=142 Identities=32% Similarity=0.552 Sum_probs=131.9
Q ss_pred ceeEeccCceeeeeeec---C---CCceEEEEecCCcchhhhhhhcccc-------------------------------
Q psy6886 3 KIGINGFGRIGLNNLNS---Q---PCLRLVSMVSDVLDVLYSELLLPRE------------------------------- 45 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~---~~~~vva~Ind~~d~~y~~~~~~~~------------------------------- 45 (146)
||||||||||||+++|+ + ++++||+ |||+.+.+|++|||||+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vva-Ind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVA-LNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEE-EecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 79999999999999998 3 3599999 99999999999996633
Q ss_pred --------------------------------------------------------------------CCCCccccchhH
Q psy6886 46 --------------------------------------------------------------------PSFVTVSNSLLT 57 (146)
Q Consensus 46 --------------------------------------------------------------------~s~~cttnclaP 57 (146)
.+++||||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap 159 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVP 159 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHH
Confidence 123599999999
Q ss_pred HHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 58 LAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 58 l~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
++|+||++|||++++|||+|++|++|+.+|+|+ ++||++|+|++||||++||++++++|++|+|+||++++++|||+++
T Consensus 160 ~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~~ 238 (325)
T TIGR01532 160 LIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTVN 238 (325)
T ss_pred HHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecccC
Confidence 999999999999999999999999999999995 7999999999999999999999999999999999999999999999
Q ss_pred eeEEEeEEC
Q psy6886 138 VSVVDLTVR 146 (146)
Q Consensus 138 ~s~~dlt~~ 146 (146)
+|++||+++
T Consensus 239 ~s~~dl~v~ 247 (325)
T TIGR01532 239 VTALDLSVT 247 (325)
T ss_pred cEEEEEEEE
Confidence 999999974
No 18
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=4.1e-36 Score=230.37 Aligned_cols=91 Identities=67% Similarity=0.969 Sum_probs=87.4
Q ss_pred hhHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeee
Q psy6886 55 LLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVP 134 (146)
Q Consensus 55 laPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP 134 (146)
|||++|+|+++|||++|+|||||++|++|+++|+|+ +|||++|+++|||||++||+++++++|+|||+||++|++||||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 799999999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEeEEC
Q psy6886 135 VANVSVVDLTVR 146 (146)
Q Consensus 135 ~~~~s~~dlt~~ 146 (146)
++++|++||+++
T Consensus 80 t~~~s~~dl~~~ 91 (157)
T PF02800_consen 80 TPNVSLHDLTVE 91 (157)
T ss_dssp SSSEEEEEEEEE
T ss_pred ecccCceEEEEe
Confidence 999999999974
No 19
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.8e-35 Score=250.21 Aligned_cols=128 Identities=27% Similarity=0.362 Sum_probs=112.2
Q ss_pred eeEeccCceeeeeeec---CCCceEEEEecCCcchh---hhhhhc-----------------------------------
Q psy6886 4 IGINGFGRIGLNNLNS---QPCLRLVSMVSDVLDVL---YSELLL----------------------------------- 42 (146)
Q Consensus 4 v~ingfgriGr~v~r~---~~~~~vva~Ind~~d~~---y~~~~~----------------------------------- 42 (146)
|||||||||||.++|+ .+++++|+ ||| .+++ |++|++
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVa-VnD-~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVG-VTK-TSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEE-Eec-CChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 6999999999999998 68899999 999 6666 344310
Q ss_pred ---------------------------------------------------cccCCCCccccchhHHHHHhhhceeeeee
Q psy6886 43 ---------------------------------------------------PREPSFVTVSNSLLTLAKVIHDNFEIVEG 71 (146)
Q Consensus 43 ---------------------------------------------------~~~~s~~cttnclaPl~kvi~~~fgI~~g 71 (146)
++-.++|||||||+|++|+|+++|||++|
T Consensus 79 Vve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~~vs~aSCtTn~Lap~~~~L~~~fGI~~~ 158 (333)
T TIGR01546 79 VVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKDYVRVVSCNTTGLVRTLNAINDYSKVDKV 158 (333)
T ss_pred EEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCceEEecCchHhhHHHHHHHHHHhcCeEEE
Confidence 12245789999999999999999999999
Q ss_pred eeeeeeccCccccccCCCCCCCCcCcccccceeeec-cc---CccceeeeeecCCCCCcceEEEeeecCCeeEEEeEEC
Q psy6886 72 LMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPA-AT---GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146 (146)
Q Consensus 72 ~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~-sT---gaakav~kviP~L~Gk~~g~a~~VP~~~~s~~dlt~~ 146 (146)
.|||+|. |++|+ |||++| ++||||+ +| +.++++++|+|+|+ ++|+++|||++++|++||++.
T Consensus 159 ~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVPt~~vs~~dl~v~ 224 (333)
T TIGR01546 159 RAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVPTTLMHVHSIMVE 224 (333)
T ss_pred EEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeCCCCcEEEEEEEE
Confidence 9999996 99995 799999 5899999 56 77999999999998 999999999999999999974
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=4.7e-25 Score=186.69 Aligned_cols=88 Identities=24% Similarity=0.360 Sum_probs=76.3
Q ss_pred CCCCccccchhHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecc----cCccceeeeeecC
Q psy6886 46 PSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAA----TGAAKAVGKVIPA 121 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~s----Tgaakav~kviP~ 121 (146)
.+.|||||||+|++|.|+++|||+++.|||+|+++ | | ++|+ |++.+||+|.+ +...+++.|++|+
T Consensus 136 ~~~sCtT~~l~~~l~~L~~~fgI~~~~vTtv~a~t------d-~--~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~ 204 (341)
T PRK04207 136 RVVSCNTTGLCRTLCALDRAFGVKKVRATLVRRAA------D-P--KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPD 204 (341)
T ss_pred EccChHHHHHHHHHHHHHHhcCceEEEEEEEEcCC------C-c--chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCC
Confidence 36789999999999999999999999999999988 2 3 3564 67889999752 3446889999999
Q ss_pred CCCCcceEEEeeecCCeeEEEeEEC
Q psy6886 122 LNGKLTGMAFRVPVANVSVVDLTVR 146 (146)
Q Consensus 122 L~Gk~~g~a~~VP~~~~s~~dlt~~ 146 (146)
|+ ++++++|||+.++++.|+++.
T Consensus 205 l~--i~~~avrVPv~~gh~~~v~v~ 227 (341)
T PRK04207 205 LD--ITTMAVKVPTTLMHMHSVNVE 227 (341)
T ss_pred Cc--eEEEEEEcCCCCceEEEEEEE
Confidence 98 999999999999999999873
No 21
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.83 E-value=1.5e-22 Score=154.64 Aligned_cols=121 Identities=26% Similarity=0.349 Sum_probs=95.6
Q ss_pred cceeEeccCceeeeeeec---CCCceEEEEecCC-cchhhhhhhccccCCCCccccchhHHHHHhhhceeeeeeeeeeee
Q psy6886 2 SKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV-LDVLYSELLLPREPSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVH 77 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~~~~~vva~Ind~-~d~~y~~~~~~~~~s~~cttnclaPl~kvi~~~fgI~~g~mTtvh 77 (146)
+||||||||||||+|+|+ .+++++|+ |||+ .|++|++|||| |||.+.+... -++...+.+-+... .++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evva-Ind~~~~~~~~a~Llk-yDs~~G~~~~---~v~~~~~~l~v~G~---~I~ 72 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVA-INDPAPDPEYLAYLLK-YDSVHGRFPG---DVEVDDDGLIVNGK---KIK 72 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEE-EEESSSSHHHHHHHHH-EETTTESGSS---HEEEETTEEEETTE---EEE
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEE-Eecccccchhhhhhhh-ccccccceec---ccccccceeEeecc---ccc
Confidence 699999999999999999 89999999 9999 59999999999 8898887654 23344555555332 222
Q ss_pred ccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCe
Q psy6886 78 ATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANV 138 (146)
Q Consensus 78 a~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~ 138 (146)
+ +|. .| |...+|+.. .-.++-++||.+++.++.-+||+++++...++.|..+.
T Consensus 73 -~--~~~-~d-p~~i~W~~~---gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~ 125 (151)
T PF00044_consen 73 -V--TEE-RD-PEEIPWGEL---GVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDD 125 (151)
T ss_dssp -E--EHT-SS-GGGSTHHHH---TESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSS
T ss_pred -c--hhh-hh-hcccccccc---cccEEEeccccceecccccccccccccceeeccccccc
Confidence 2 222 12 666789754 34799999999999999999999999999999999875
No 22
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.68 E-value=6.9e-18 Score=128.47 Aligned_cols=121 Identities=24% Similarity=0.327 Sum_probs=94.8
Q ss_pred cceeEeccCceeeeeeec---CCCceEEEEecCCcchhhhhhhccccCCCCccccchhHHHHHhhhceeeeeeeeeeeec
Q psy6886 2 SKIGINGFGRIGLNNLNS---QPCLRLVSMVSDVLDVLYSELLLPREPSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHA 78 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~~~~~vva~Ind~~d~~y~~~~~~~~~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha 78 (146)
+||+|||||||||.++|+ .+++++|+ |||+.+++|++|||| |||.+..... -++...+.+-+....
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lva-i~d~~~~~~~a~ll~-~Ds~hg~~~~---~v~~~~~~l~i~g~~------ 69 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVA-INDLTDPETLAHLLK-YDSVHGRFPG---EVEVDEDGLIVNGKK------ 69 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEE-eecCCCHHHHHHHhc-ccCCCCCCCC---cEEEeCCEEEECCEE------
Confidence 589999999999999998 68999999 999999999999999 8898876654 233344445443322
Q ss_pred cCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCe
Q psy6886 79 TTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANV 138 (146)
Q Consensus 79 ~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~ 138 (146)
+.-.|+. | |...+|+.. .-.|+-++||.+++..+..+||+++.+...++.|..+.
T Consensus 70 i~~~~~~-~-p~~~~w~~~---gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~ 124 (149)
T smart00846 70 IKVLAER-D-PANLPWKEL---GVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDA 124 (149)
T ss_pred EEEEecC-C-hHHCccccc---CCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCC
Confidence 2223331 2 666678753 34899999999999999999999999999999998764
No 23
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.32 E-value=9.2e-13 Score=111.20 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=86.1
Q ss_pred CCCCccccchhHHHHHhhhceeeeeeeeeeeeccC------------ccccccCCCC--CCCCcCcccccceeeecc---
Q psy6886 46 PSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATT------------ATQKTVDGPS--GKLWRDGRGAAQNIIPAA--- 108 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t------------~~Q~~~D~p~--~~~~r~~r~a~~niIP~s--- 108 (146)
.+++|+++|++|.++.|+++|+|+...+||+|+++ .+|+.+|+|+ .+++|++|+++.|++|..
T Consensus 125 anp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~ 204 (334)
T PRK14874 125 ANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVF 204 (334)
T ss_pred ECccHHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCcc
Confidence 47889999999999999999999999999999999 4888888664 368899999999999997
Q ss_pred --cCccce-------eeeee--cCCCCCcceEEEeeecCCeeEEEeEE
Q psy6886 109 --TGAAKA-------VGKVI--PALNGKLTGMAFRVPVANVSVVDLTV 145 (146)
Q Consensus 109 --Tgaaka-------v~kvi--P~L~Gk~~g~a~~VP~~~~s~~dlt~ 145 (146)
||.... +.|++ |++ ++...++|||+..+++.++++
T Consensus 205 ~~~gh~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v 250 (334)
T PRK14874 205 MDDGYTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNI 250 (334)
T ss_pred ccCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEE
Confidence 776555 56776 888 599999999999999999986
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.32 E-value=7.7e-13 Score=112.19 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=87.0
Q ss_pred CCCCccccchhHHHHHhhhceeeeeeeeeeeeccCcc------------ccccCCCCCCC-------CcCcccccceeee
Q psy6886 46 PSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTAT------------QKTVDGPSGKL-------WRDGRGAAQNIIP 106 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~------------Q~~~D~p~~~~-------~r~~r~a~~niIP 106 (146)
.+++|+++|+++.++.|+++|+|++..+||+|+++.. |++.+++.... .+++|++++|+||
T Consensus 123 anp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp 202 (339)
T TIGR01296 123 ANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIP 202 (339)
T ss_pred ECCCcHHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccC
Confidence 4788999999999999999999999999999999995 66666654322 6788999999999
Q ss_pred cc-----cCccceeeeeecCCC-------CCcceEEEeeecCCeeEEEeEE
Q psy6886 107 AA-----TGAAKAVGKVIPALN-------GKLTGMAFRVPVANVSVVDLTV 145 (146)
Q Consensus 107 ~s-----Tgaakav~kviP~L~-------Gk~~g~a~~VP~~~~s~~dlt~ 145 (146)
.. +|......|+.|||+ .+++..++|||+..+++.++++
T Consensus 203 ~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v 253 (339)
T TIGR01296 203 HIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNI 253 (339)
T ss_pred cCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEE
Confidence 94 788888889999986 3688999999999999999986
No 25
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.89 E-value=1.6e-09 Score=92.02 Aligned_cols=91 Identities=23% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCCccccchhHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCc--------cceeee
Q psy6886 46 PSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA--------AKAVGK 117 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTga--------akav~k 117 (146)
.+++|+++|+.+.++.|++ ||+++..+|++|+++..++. +.+.+..+.|++|..++. .+.+++
T Consensus 146 a~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~--------~~~~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~ 216 (349)
T PRK08664 146 TNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYP--------GVPSMDIVDNVIPYIGGEEEKIEKETLKILGK 216 (349)
T ss_pred EccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcc--------cchhhhhhcCcccccCchhhhhhHHHHHHhhh
Confidence 5678999999999999999 99999999999999987652 223455788999999886 577776
Q ss_pred e----ecCCCCCcceEEEeeecCCeeEEEeEE
Q psy6886 118 V----IPALNGKLTGMAFRVPVANVSVVDLTV 145 (146)
Q Consensus 118 v----iP~L~Gk~~g~a~~VP~~~~s~~dlt~ 145 (146)
. +|+++.+++..+++||+..+.+.++++
T Consensus 217 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~ 248 (349)
T PRK08664 217 FEGGKIVPADFPISATCHRVPVIDGHTEAVFV 248 (349)
T ss_pred cccccccCCCceEEEEeEEccccccEEEEEEE
Confidence 6 788899999999999999999999886
No 26
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=98.25 E-value=1.2e-06 Score=74.34 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=74.2
Q ss_pred CCCCccccchhHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccceeeecccCccc----eeeeeecC
Q psy6886 46 PSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAK----AVGKVIPA 121 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaak----av~kviP~ 121 (146)
.++.|+++|+.+.++-|+++++|++..+++.++++..++... + .+..+.|++|...+... -+.+++++
T Consensus 142 anPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-~-------~~~~~~Ni~py~~~~ehrh~~Ei~~il~~ 213 (341)
T TIGR00978 142 TNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-P-------SMDILDNIIPHIGGEEEKIERETRKILGK 213 (341)
T ss_pred eCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-c-------cchhhCCeEecCcHHHHHHHHHHHHHhCc
Confidence 378899999999999999999999999999999999886421 1 12357899999987522 24677777
Q ss_pred CCC--------CcceEEEeeecCCeeEEEeEE
Q psy6886 122 LNG--------KLTGMAFRVPVANVSVVDLTV 145 (146)
Q Consensus 122 L~G--------k~~g~a~~VP~~~~s~~dlt~ 145 (146)
++| +++.++++||+..+.+.++++
T Consensus 214 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v 245 (341)
T TIGR00978 214 LENGKIEPAPFSVSATTTRVPVLDGHTESVHV 245 (341)
T ss_pred cccCcccCCCceEEEEEEEcCccccEEEEEEE
Confidence 755 377789999999999999886
No 27
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.86 E-value=0.0088 Score=51.14 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=66.8
Q ss_pred CCCccccchhHHHHHhhhceeeeeeeeeeeeccCcc----------c--cccCC-CCCCCCcCcccccceeeeccc-Ccc
Q psy6886 47 SFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTAT----------Q--KTVDG-PSGKLWRDGRGAAQNIIPAAT-GAA 112 (146)
Q Consensus 47 s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~----------Q--~~~D~-p~~~~~r~~r~a~~niIP~sT-gaa 112 (146)
++.|+|-.+...+|-||+.|||++-.+||..+.... | ....+ |.. -. .+--+.|.||.-- +..
T Consensus 127 nPNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~--~~-~~~iAFNviP~ig~~m~ 203 (322)
T PRK06901 127 LPDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLD--EE-EQRLAFDVFPANAQNLE 203 (322)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCC--CC-ceeeeccccccCCccHH
Confidence 778999999999999999999999999999887662 1 11111 111 11 1345678888763 444
Q ss_pred ceeeeeecCCCCCcceEEEeeecCCeeEEEeE
Q psy6886 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 144 (146)
Q Consensus 113 kav~kviP~L~Gk~~g~a~~VP~~~~s~~dlt 144 (146)
.-..|++|+| .+++..++|||+.++.-.-++
T Consensus 204 ~EtrKIl~~l-~~VsaTcVRVPV~~GHs~sV~ 234 (322)
T PRK06901 204 LQLQKIFPQL-ENVTFHSIQVPVFYGLAQMVT 234 (322)
T ss_pred HHHHHHhCCc-ccEEEEEEEcceeccEEEEEE
Confidence 4556788777 467899999999988654443
No 28
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.34 E-value=0.061 Score=46.25 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCCCccccchhHHHHHhhhceeeeeeeeeeeeccCcccc-ccCC---------C-CCCCCcCcccccceeeecccC----
Q psy6886 46 PSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQK-TVDG---------P-SGKLWRDGRGAAQNIIPAATG---- 110 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~-~~D~---------p-~~~~~r~~r~a~~niIP~sTg---- 110 (146)
-++.|+|-.|.+.+|-|+++|+|+.-.++|..+....=. .++- + ...+-. ++--|.|.||.-.+
T Consensus 129 anpNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~-~~~iAfNviP~I~~~~~n 207 (334)
T COG0136 129 ANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPI-GYPLAFNVIPHIDGFLDN 207 (334)
T ss_pred ECCChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccc-cccccccccccCCccccC
Confidence 377899999999999999999999999999887765222 1110 0 001111 22234599998766
Q ss_pred --------ccceeeeeecCCCCCcceEEEeeecCCeeEEEe
Q psy6886 111 --------AAKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 143 (146)
Q Consensus 111 --------aakav~kviP~L~Gk~~g~a~~VP~~~~s~~dl 143 (146)
...-..|++..-.-++++.++|||+..+..--+
T Consensus 208 g~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v 248 (334)
T COG0136 208 GYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAV 248 (334)
T ss_pred CccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEE
Confidence 333445777766678999999999988765433
No 29
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.30 E-value=0.012 Score=42.92 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=26.5
Q ss_pred cceeEecc-Cceeeeeeec---CCCceEEEEecCC
Q psy6886 2 SKIGINGF-GRIGLNNLNS---QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingf-griGr~v~r~---~~~~~vva~Ind~ 32 (146)
+||+|+|+ ||+||.+.++ ++++++++ +-|.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~-~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVG-AVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEE-EEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEE-EEec
Confidence 58999999 9999999998 79999999 6544
No 30
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=93.28 E-value=0.03 Score=48.59 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=40.6
Q ss_pred CCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 89 PSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 89 p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
|...+|++- .-.|+-++||.++..++...||+++++.+.++.|..+
T Consensus 95 P~~ipW~~~---gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d 140 (361)
T PTZ00434 95 PADLPWGKL---GVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG 140 (361)
T ss_pred hhhCchhhc---CCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC
Confidence 777789764 3489999999999999999999999999999999665
No 31
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.11 E-value=0.033 Score=45.75 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=27.5
Q ss_pred CcceeEec-cCceeeeeeec---CCCceEEEEecCC
Q psy6886 1 MSKIGING-FGRIGLNNLNS---QPCLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ing-fgriGr~v~r~---~~~~~vva~Ind~ 32 (146)
|+||+|.| +||+|+.+.|. .+++++|+ +-|.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elva-v~d~ 35 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVA-AFER 35 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEE-EEec
Confidence 78999999 79999999998 68899999 7663
No 32
>KOG0657|consensus
Probab=91.16 E-value=0.25 Score=41.60 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=88.2
Q ss_pred eeeeeeecCCCceEEEEecCC-cchhhhhhhccccCCCCccccchhHHHHHhhhceeeeeeeeeeeeccCccccccCCCC
Q psy6886 12 IGLNNLNSQPCLRLVSMVSDV-LDVLYSELLLPREPSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS 90 (146)
Q Consensus 12 iGr~v~r~~~~~~vva~Ind~-~d~~y~~~~~~~~~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~ 90 (146)
|||+++. .++++||+ |||| +|++||+|||| |||++.+... ..|..+.+ +|.. -++++..|+. | |+
T Consensus 1 ig~~~~~-~~~v~vv~-indpfi~~~~~~y~~k-ydsthG~f~g---~~k~~~~~-~i~~-----G~~i~~~~~~-~-p~ 66 (285)
T KOG0657|consen 1 IGRLVLQ-RNSVDVVA-INDPFIDLNYLAYMLK-YDSTHGKFHG---TVKAENFK-LIIN-----GNPITIFQFR-D-PA 66 (285)
T ss_pred CCccccc-cCCccccc-ccCccccccccccccc-ccccCCcccc---ceeecCCc-eeec-----CceEEeeccc-C-cc
Confidence 6888884 55599999 9999 99999999999 8999998777 34433333 3332 4566777774 4 77
Q ss_pred CCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 91 GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 91 ~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
+..|.+. .+.++-++||.+.++++..-|+++..+...+.+|..+
T Consensus 67 ~i~w~~~---g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~d 110 (285)
T KOG0657|consen 67 KIPWGAK---GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSAD 110 (285)
T ss_pred cCccccc---cceeEeeccccccccccccccccccceEEEeccccCC
Confidence 7889865 4589999999999999999999999999999999887
No 33
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=90.82 E-value=0.083 Score=43.33 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=24.8
Q ss_pred CcceeEeccCceeeeeeec---CCCceEEEEec
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QPCLRLVSMVS 30 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~~~~vva~In 30 (146)
|+||+|-|+|+||+.+.+. .+++++++ +-
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~-v~ 32 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDW-VI 32 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEE-EE
Confidence 7899999999999999987 56788877 53
No 34
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=90.57 E-value=0.095 Score=42.74 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=26.6
Q ss_pred CcceeEecc-Cceeeeeeec---CCCceEEEEecCC
Q psy6886 1 MSKIGINGF-GRIGLNNLNS---QPCLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ingf-griGr~v~r~---~~~~~vva~Ind~ 32 (146)
|+||+|.|. |++|+.+.+. .+++++|+ +-|.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elva-v~d~ 35 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVA-AVDR 35 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEE-EEec
Confidence 689999998 9999998887 57899999 7664
No 35
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=89.43 E-value=0.39 Score=41.79 Aligned_cols=35 Identities=11% Similarity=-0.102 Sum_probs=32.0
Q ss_pred CCCccccchhHHHHHhhhceeeeeeeeeeeeccCc
Q psy6886 47 SFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTA 81 (146)
Q Consensus 47 s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~ 81 (146)
++.|+|..+...++-||+.|+|++-.++|..+...
T Consensus 131 nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSG 165 (366)
T TIGR01745 131 GGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASG 165 (366)
T ss_pred CcCHHHHHHHHHHHHHHhccCccEEEEEechhhhh
Confidence 57799999999999999999999999999988765
No 36
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=88.90 E-value=0.15 Score=42.58 Aligned_cols=27 Identities=37% Similarity=0.659 Sum_probs=23.9
Q ss_pred CcceeEecc-Cceeeeeeec---CCCceEEE
Q psy6886 1 MSKIGINGF-GRIGLNNLNS---QPCLRLVS 27 (146)
Q Consensus 1 ~~kv~ingf-griGr~v~r~---~~~~~vva 27 (146)
|+||+|+|. ||.||.+.|+ .+++++++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~a 32 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVA 32 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEE
Confidence 789999999 8999999998 67778777
No 37
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=88.15 E-value=0.27 Score=42.38 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=56.7
Q ss_pred cccchhHHHH--Hhhhce-e--e--eee-eeeee-eccCccccccCCCCCCCCcCcccccceeeecccCccceeeeeecC
Q psy6886 51 VSNSLLTLAK--VIHDNF-E--I--VEG-LMTTV-HATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPA 121 (146)
Q Consensus 51 ttnclaPl~k--vi~~~f-g--I--~~g-~mTtv-ha~t~~Q~~~D~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~ 121 (146)
...-+|-|+| ..|++| + + +++ +...- +.+.-+|+. | |...+|.+- .-.|+-++||.+++.++...|
T Consensus 38 ~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~-d-p~~~~w~~~---gvDiVie~TG~f~~~~~a~~h 112 (342)
T PTZ00353 38 SIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKH-D-LVEIAWRDY---GVQYVVECTGLYSTRSRCWGH 112 (342)
T ss_pred CHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecC-C-cccCccccc---CCCEEEEcccccccHhhhhhh
Confidence 3445566654 477888 3 3 222 32221 334444542 2 666789743 238999999999999999999
Q ss_pred CCCCcceEEEeeecCCee
Q psy6886 122 LNGKLTGMAFRVPVANVS 139 (146)
Q Consensus 122 L~Gk~~g~a~~VP~~~~s 139 (146)
|+++.++..+..|.+++.
T Consensus 113 l~~Gakkviisaps~d~p 130 (342)
T PTZ00353 113 VTGGAKGVFVAGQSADAP 130 (342)
T ss_pred hhcCCCcEEEeCCCCCCC
Confidence 998899999999987753
No 38
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=87.73 E-value=0.79 Score=39.56 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCCccccchhHHHHHhhhceeeeeeeeeeeeccCccc------------cccCC-C-CCCCCc-----Ccccccceeeec
Q psy6886 47 SFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQ------------KTVDG-P-SGKLWR-----DGRGAAQNIIPA 107 (146)
Q Consensus 47 s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q------------~~~D~-p-~~~~~r-----~~r~a~~niIP~ 107 (146)
++.|++.++...++-|+++++|++-.++|..+.+..= ...++ | ..+-+- ..+.-+.|+||.
T Consensus 129 nPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~ 208 (347)
T PRK06728 129 VPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQ 208 (347)
T ss_pred CCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCc
Confidence 6779999999999999999999887788887776511 01111 0 000000 013356799998
Q ss_pred cc-----C-------ccceeeeee--cCCCCCcceEEEeeecCCeeEEEeE
Q psy6886 108 AT-----G-------AAKAVGKVI--PALNGKLTGMAFRVPVANVSVVDLT 144 (146)
Q Consensus 108 sT-----g-------aakav~kvi--P~L~Gk~~g~a~~VP~~~~s~~dlt 144 (146)
-- | ...-..|++ |.| +++..++|||+..+.-.-++
T Consensus 209 i~~~~~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ 257 (347)
T PRK06728 209 VDIFTDNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVY 257 (347)
T ss_pred CCccccCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEE
Confidence 51 2 111234555 555 48899999999987654443
No 39
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=83.33 E-value=0.43 Score=40.86 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=26.6
Q ss_pred CcceeEeccCceeeeeeec---CCCceEEEEecCC
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~~~~vva~Ind~ 32 (146)
++||+|-|+|+||+.+.++ ++++++|+ +=|.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVg-V~dr 36 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVG-VFSR 36 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEE-EEcC
Confidence 3799999999999998887 78899999 7554
No 40
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=81.58 E-value=0.57 Score=38.34 Aligned_cols=31 Identities=32% Similarity=0.294 Sum_probs=25.8
Q ss_pred CcceeEeccCceeeeeeec---CC-CceEEEEecCC
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QP-CLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~-~~~vva~Ind~ 32 (146)
|+|+||-|+|+||+.+.++ .+ .+++++ +-|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~-v~d~ 35 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYA-FYDR 35 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEE-EECC
Confidence 7899999999999988887 32 688888 7665
No 41
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=80.61 E-value=0.61 Score=32.52 Aligned_cols=30 Identities=37% Similarity=0.639 Sum_probs=26.0
Q ss_pred cceeEeccCceeeeeeec----CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS----QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~----~~~~~vva~Ind~ 32 (146)
+|++|-|.|++|+..+++ .+++++++ |-|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~-v~d~ 34 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVA-VCDP 34 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEE-EECS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEE-EEeC
Confidence 589999999999988876 48899999 8777
No 42
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=79.72 E-value=1.2 Score=40.07 Aligned_cols=107 Identities=12% Similarity=0.154 Sum_probs=66.6
Q ss_pred EEEEecCC--cchhhhhhhccccC--------------CCCccccchhHHHH--Hhhhcee----ee---eeeeeeeecc
Q psy6886 25 LVSMVSDV--LDVLYSELLLPREP--------------SFVTVSNSLLTLAK--VIHDNFE----IV---EGLMTTVHAT 79 (146)
Q Consensus 25 vva~Ind~--~d~~y~~~~~~~~~--------------s~~cttnclaPl~k--vi~~~fg----I~---~g~mTtvha~ 79 (146)
=|+ ||.. |.-.-+..+++... +-.....-+|-|+| ..|++|. +. +.++..-..+
T Consensus 129 ~V~-InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I 207 (477)
T PRK08289 129 DVV-LYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYI 207 (477)
T ss_pred eEE-EECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEE
Confidence 477 8887 66555555554110 11233334556654 3667774 22 1232222223
Q ss_pred CccccccCCCCCCCCcCcccccce--eeecccCccceeeeeecCCC-CCcceEEEeeecCC
Q psy6886 80 TATQKTVDGPSGKLWRDGRGAAQN--IIPAATGAAKAVGKVIPALN-GKLTGMAFRVPVAN 137 (146)
Q Consensus 80 t~~Q~~~D~p~~~~~r~~r~a~~n--iIP~sTgaakav~kviP~L~-Gk~~g~a~~VP~~~ 137 (146)
.-.+. +.|...+|..- +-+ ++-++||+++.-++...||+ ++++.+.++.|..+
T Consensus 208 ~v~~~--~dP~~i~W~~~---Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~ 263 (477)
T PRK08289 208 QVIYA--NSPEEVDYTAY---GINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKG 263 (477)
T ss_pred EEEec--CChHHCCchhc---CCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCC
Confidence 33333 23777789753 336 99999999999999999999 88999999999765
No 43
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=79.64 E-value=0.68 Score=38.17 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=25.2
Q ss_pred cceeEeccCceeeeeeec----CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS----QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~----~~~~~vva~Ind~ 32 (146)
+||||-|+|+||+.+.+. .+.+++++ +-|+
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~a-V~dr 40 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSA-VAVR 40 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEE-EECC
Confidence 789999999999988876 25789988 8665
No 44
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=73.90 E-value=1.1 Score=34.35 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=21.6
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEecC
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVSD 31 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~Ind 31 (146)
+|||=|||+||+.+.|. .+ .+|++ .+-
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG-~~V~~-~d~ 67 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFG-MRVIG-YDR 67 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT--EEEE-EES
T ss_pred EEEEEEEcCCcCeEeeeeecCC-ceeEE-ecc
Confidence 69999999999999987 55 58777 643
No 45
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=73.60 E-value=5.5 Score=34.74 Aligned_cols=35 Identities=11% Similarity=-0.097 Sum_probs=30.4
Q ss_pred CCCccccchhHHHHHhhhceeeeeeeeeeeeccCc
Q psy6886 47 SFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTA 81 (146)
Q Consensus 47 s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~ 81 (146)
++.|+|.+++.-++-|+++++|++-.++|..+.+.
T Consensus 132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSG 166 (369)
T PRK06598 132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASG 166 (369)
T ss_pred cCChHHHHHHHHHHHHHhcCCceEEEEEeeecccc
Confidence 77899999998899999999999888888877765
No 46
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=71.97 E-value=1.5 Score=36.78 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.4
Q ss_pred cceeEeccCceeeeeeec-----CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS-----QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~-----~~~~~vva~Ind~ 32 (146)
.||||-|||.||+.|.++ .+.+++++ ++|.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~-V~~~ 37 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAA-LTRN 37 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEE-EecC
Confidence 589999999999999886 24489999 8876
No 47
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=69.48 E-value=3.1 Score=36.94 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=64.5
Q ss_pred EEEecCC--cchhhhhhhccc--------cCCCCccccchhHHHH--Hhhhcee--e---eee-eeeeeeccCccccccC
Q psy6886 26 VSMVSDV--LDVLYSELLLPR--------EPSFVTVSNSLLTLAK--VIHDNFE--I---VEG-LMTTVHATTATQKTVD 87 (146)
Q Consensus 26 va~Ind~--~d~~y~~~~~~~--------~~s~~cttnclaPl~k--vi~~~fg--I---~~g-~mTtvha~t~~Q~~~D 87 (146)
|+ ||.. |.-.....++.. .| .....+.++-|+| -.|++|. + +++ +.-.-..+.-.|+ .
T Consensus 88 vg-InGFGRIGR~v~R~~~~~~~i~vvaINd-p~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~--~ 163 (421)
T PLN02272 88 IG-INGFGRIGRLVLRIATSRDDIEVVAVND-PFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSK--R 163 (421)
T ss_pred EE-EECcCHHHHHHHHHHhhcCCcEEEEecC-CCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEec--C
Confidence 67 8887 554444433320 11 1233455666655 3667775 3 222 2111122222222 1
Q ss_pred CCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCee
Q psy6886 88 GPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVS 139 (146)
Q Consensus 88 ~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~s 139 (146)
.|...+|.+- .-.|+-++||.+.+.++...|++++.+...+..|.+++.
T Consensus 164 dp~~~~w~~~---gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvP 212 (421)
T PLN02272 164 DPAEIPWGDF---GAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAP 212 (421)
T ss_pred CcccCccccc---CCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCC
Confidence 2666689742 237999999999999999999999999999999977653
No 48
>KOG0068|consensus
Probab=69.27 E-value=2.1 Score=37.49 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=19.5
Q ss_pred eeEeccCceeeeeeec--CCCceEEEEecCC
Q psy6886 4 IGINGFGRIGLNNLNS--QPCLRLVSMVSDV 32 (146)
Q Consensus 4 v~ingfgriGr~v~r~--~~~~~vva~Ind~ 32 (146)
+||-||||||+.|.+. .....++. - ||
T Consensus 149 LgvlG~GrIGseVA~r~k~~gm~vI~-~-dp 177 (406)
T KOG0068|consen 149 LGVLGLGRIGSEVAVRAKAMGMHVIG-Y-DP 177 (406)
T ss_pred EEEeecccchHHHHHHHHhcCceEEe-e-cC
Confidence 6899999999999986 33344444 2 65
No 49
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=68.96 E-value=1.7 Score=34.99 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=25.9
Q ss_pred cceeEeccCceeeeeeec--CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS--QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~~~~~vva~Ind~ 32 (146)
.||.|-|||.+|+.+.+. ....+||+ |.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~-v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVA-VSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEE-EECC
Confidence 579999999999999987 55699999 8875
No 50
>PRK11579 putative oxidoreductase; Provisional
Probab=68.29 E-value=2.2 Score=35.77 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=24.2
Q ss_pred cceeEeccCceeee-eeec---CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLN-NLNS---QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~-v~r~---~~~~~vva~Ind~ 32 (146)
+||||=|.|+||+. ..++ .+.+++++ |.|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~a-v~d~ 38 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAA-VSSS 38 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEE-EECC
Confidence 79999999999973 4454 57799999 8775
No 51
>PRK10206 putative oxidoreductase; Provisional
Probab=67.64 E-value=3.8 Score=34.62 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=24.3
Q ss_pred CcceeEeccCceee-eeeec----CCCceEEEEecCC
Q psy6886 1 MSKIGINGFGRIGL-NNLNS----QPCLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ingfgriGr-~v~r~----~~~~~vva~Ind~ 32 (146)
|+|+||=|+|+|++ .-.++ .+.++++| |-|+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~a-v~d~ 36 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAH-IFRR 36 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEE-EEcC
Confidence 78999999999874 44453 36799999 8876
No 52
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=66.85 E-value=9 Score=32.85 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCccccchhHHHHHhhhceeeeeeeeeeeeccCcccc-ccCC--------CCCCC---CcCcccccceeeec------c
Q psy6886 47 SFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQK-TVDG--------PSGKL---WRDGRGAAQNIIPA------A 108 (146)
Q Consensus 47 s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~~Q~-~~D~--------p~~~~---~r~~r~a~~niIP~------s 108 (146)
++.|.+.++.--++-|+++++|++-.+++..+....=+ ..+. ..++. -.-.+-.+.|++|. .
T Consensus 129 nPgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~ 208 (336)
T PRK08040 129 VADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGS 208 (336)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCc
Confidence 56799999988889999999998866666655544211 0000 00000 00011135699998 4
Q ss_pred cCccce----eeeee--cCCCCCcceEEEeeecCCeeEEEeE
Q psy6886 109 TGAAKA----VGKVI--PALNGKLTGMAFRVPVANVSVVDLT 144 (146)
Q Consensus 109 Tgaaka----v~kvi--P~L~Gk~~g~a~~VP~~~~s~~dlt 144 (146)
+..=+- +.|++ |++ +++-...|||+..+-..-+.
T Consensus 209 ~~~erh~~~Ei~kiL~~~~~--~vs~t~~~vPv~rG~~~tv~ 248 (336)
T PRK08040 209 VREERRLVDQVRKILQDEGL--PISVSCVQSPVFYGHAQMVH 248 (336)
T ss_pred chHhhhhHHHHHHHhCCCCC--eEEEEeEEecchhcEEEEEE
Confidence 332211 23333 112 25667789999988765544
No 53
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=65.53 E-value=2.2 Score=35.80 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=20.9
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~In 30 (146)
++||=|||+||+.+.|. .+ .+|++ .+
T Consensus 147 tvGIiG~G~IG~~vA~~~~~fg-m~V~~-~d 175 (311)
T PRK08410 147 KWGIIGLGTIGKRVAKIAQAFG-AKVVY-YS 175 (311)
T ss_pred EEEEECCCHHHHHHHHHHhhcC-CEEEE-EC
Confidence 58999999999998876 44 57777 54
No 54
>PRK06270 homoserine dehydrogenase; Provisional
Probab=64.82 E-value=1.7 Score=36.99 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=24.7
Q ss_pred CcceeEeccCceeeeeeec---C--------C-CceEEEEecC
Q psy6886 1 MSKIGINGFGRIGLNNLNS---Q--------P-CLRLVSMVSD 31 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~--------~-~~~vva~Ind 31 (146)
++||+|-|||.+|+.+.|. . + ++++|+ |-|
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vva-i~d 43 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVA-IAD 43 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEE-EEe
Confidence 3689999999999988876 2 2 689999 865
No 55
>PRK06487 glycerate dehydrogenase; Provisional
Probab=64.59 E-value=2.6 Score=35.49 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=21.8
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEecC
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVSD 31 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~Ind 31 (146)
++||=|||+||+.|.|. .+ .+|++ .+.
T Consensus 150 tvgIiG~G~IG~~vA~~l~~fg-m~V~~-~~~ 179 (317)
T PRK06487 150 TLGLLGHGELGGAVARLAEAFG-MRVLI-GQL 179 (317)
T ss_pred EEEEECCCHHHHHHHHHHhhCC-CEEEE-ECC
Confidence 69999999999999887 44 57777 653
No 56
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=62.67 E-value=2.9 Score=36.18 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=37.8
Q ss_pred CCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 89 PSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 89 p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
|...+|.+. .-.|+-++||.+.+.++.-.||+++.+..-++.|..+
T Consensus 80 p~~~~W~~~---gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d 125 (343)
T PRK07729 80 PKELPWTDL---GIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKN 125 (343)
T ss_pred hhhCccccc---CCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCC
Confidence 767789753 3389999999999999999999998888888887443
No 57
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=60.77 E-value=2.9 Score=33.49 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=25.1
Q ss_pred cceeEeccCceeeeeeec--CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS--QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~~~~~vva~Ind~ 32 (146)
.+|.|-|||..|+.+.+. .....+|+ |.|.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~-vsD~ 55 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLA-VSDP 55 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEE-EEcC
Confidence 479999999999998887 34488899 8885
No 58
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=59.62 E-value=4.6 Score=34.59 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 89 PSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 89 p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
|...+|.+. .-.|+-++||.+.+-++.-.||+++.+..-++.|..+
T Consensus 81 p~~~~w~~~---gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d 126 (327)
T TIGR01534 81 PSDLPWKAL---GVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKG 126 (327)
T ss_pred cccCchhhc---CCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCC
Confidence 666689643 2389999999999999998999999999999988444
No 59
>PRK06932 glycerate dehydrogenase; Provisional
Probab=57.43 E-value=3.9 Score=34.42 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.0
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~In 30 (146)
+|||=|||+|||.|.|. .+ .+|++ .+
T Consensus 149 tvgIiG~G~IG~~va~~l~~fg-~~V~~-~~ 177 (314)
T PRK06932 149 TLGVFGKGCLGTEVGRLAQALG-MKVLY-AE 177 (314)
T ss_pred EEEEECCCHHHHHHHHHHhcCC-CEEEE-EC
Confidence 69999999999998876 44 57777 54
No 60
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=57.03 E-value=3.8 Score=34.91 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=19.6
Q ss_pred ceeEeccCceeeeeeec--CCCceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva 27 (146)
+|||=|||+||+.|.+. .=.++|++
T Consensus 144 TvGIiG~G~IG~~va~~l~afgm~v~~ 170 (324)
T COG0111 144 TVGIIGLGRIGRAVAKRLKAFGMKVIG 170 (324)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 58999999999999855 23367766
No 61
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=54.65 E-value=7.9 Score=33.39 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 89 PSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 89 p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
|...+|.+- .-.++-++||.+.+.++.-.||+++.+..-++.|..+
T Consensus 81 p~~~~W~~~---gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d 126 (337)
T PRK07403 81 PLNLPWKEW---GIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKG 126 (337)
T ss_pred cccCChhhc---CCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCC
Confidence 677789753 3389999999999999999999998888888888443
No 62
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=52.86 E-value=6 Score=35.44 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=37.9
Q ss_pred CCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCC
Q psy6886 89 PSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVAN 137 (146)
Q Consensus 89 p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~ 137 (146)
|...+|.+. .-.|+-++||.+.+.++.-.||+++.+..-++.|..+
T Consensus 156 p~~l~W~~~---gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d 201 (442)
T PLN02237 156 PLKLPWAEL---GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKG 201 (442)
T ss_pred chhCChhhc---CCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCC
Confidence 556689643 3489999999999999999999999999989888554
No 63
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=52.03 E-value=3.3 Score=35.07 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=19.1
Q ss_pred ceeEeccCceeeeeeec-C-C-CceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS-Q-P-CLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~-~-~-~~~vva 27 (146)
++||=|||+|||.|.|. . + .++|++
T Consensus 147 tvGIiG~G~IG~~va~~l~~~fgm~V~~ 174 (323)
T PRK15409 147 TLGIVGMGRIGMALAQRAHFGFNMPILY 174 (323)
T ss_pred EEEEEcccHHHHHHHHHHHhcCCCEEEE
Confidence 68999999999998875 2 2 256665
No 64
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=51.44 E-value=5.2 Score=33.14 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.7
Q ss_pred cceeEeccCceeeeeeec--CCCceEEEEecC
Q psy6886 2 SKIGINGFGRIGLNNLNS--QPCLRLVSMVSD 31 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~~~~~vva~Ind 31 (146)
.||.|-|||..|+.+.+. ....+||+ |+|
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~Gakvva-VsD 69 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVT-LSD 69 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEE-EEC
Confidence 479999999999988887 44589999 887
No 65
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=49.94 E-value=3.8 Score=34.94 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.1
Q ss_pred ceeEeccCceeeeeeec-CC-CceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS-QP-CLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~-~~-~~~vva 27 (146)
++||=|+||||+.|.|. .+ ..+|+.
T Consensus 148 tvGIiG~GrIG~avA~r~~~Fgm~v~y 174 (324)
T COG1052 148 TLGIIGLGRIGQAVARRLKGFGMKVLY 174 (324)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEE
Confidence 68999999999999987 22 255554
No 66
>PRK07574 formate dehydrogenase; Provisional
Probab=49.71 E-value=5.8 Score=34.62 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=20.8
Q ss_pred ceeEeccCceeeeeeec--CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva~In 30 (146)
+|||=|||+||+.+.|. .-..+|.+ .+
T Consensus 194 tVGIvG~G~IG~~vA~~l~~fG~~V~~-~d 222 (385)
T PRK07574 194 TVGIVGAGRIGLAVLRRLKPFDVKLHY-TD 222 (385)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEE-EC
Confidence 69999999999998886 22357766 54
No 67
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=48.46 E-value=6.2 Score=34.50 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.7
Q ss_pred ceeEeccCceeeeeeec---CCCceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva 27 (146)
++||=|||+||+.+.|. .+ .+|++
T Consensus 153 tvGIiG~G~IG~~vA~~~~~fG-m~V~~ 179 (409)
T PRK11790 153 TLGIVGYGHIGTQLSVLAESLG-MRVYF 179 (409)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEE
Confidence 69999999999998886 44 56666
No 68
>PRK06392 homoserine dehydrogenase; Provisional
Probab=47.93 E-value=6.2 Score=33.66 Aligned_cols=30 Identities=43% Similarity=0.627 Sum_probs=24.3
Q ss_pred cceeEeccCceeeeeeec--C--------CCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS--Q--------PCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~--------~~~~vva~Ind~ 32 (146)
+||+|-|||-+|+-+.|. . .++++|+ |.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVa-Vsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVS-VSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEE-EEEC
Confidence 389999999999998886 2 4688998 8663
No 69
>PLN02928 oxidoreductase family protein
Probab=46.52 E-value=7.1 Score=33.34 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.4
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~In 30 (146)
++||=|||+||+.+.|. .+ .+|++ .+
T Consensus 161 tvGIiG~G~IG~~vA~~l~afG-~~V~~-~d 189 (347)
T PLN02928 161 TVFILGYGAIGIELAKRLRPFG-VKLLA-TR 189 (347)
T ss_pred EEEEECCCHHHHHHHHHHhhCC-CEEEE-EC
Confidence 69999999999998876 45 58877 64
No 70
>PLN02306 hydroxypyruvate reductase
Probab=46.27 E-value=4.7 Score=35.15 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=19.7
Q ss_pred ceeEeccCceeeeeeec-C-C-CceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS-Q-P-CLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~-~-~-~~~vva 27 (146)
+|||=|||+||+.+.|. . + ..+|++
T Consensus 167 tvGIiG~G~IG~~vA~~l~~~fGm~V~~ 194 (386)
T PLN02306 167 TVGVIGAGRIGSAYARMMVEGFKMNLIY 194 (386)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 69999999999998875 1 2 467776
No 71
>PRK06436 glycerate dehydrogenase; Provisional
Probab=45.70 E-value=7.2 Score=32.81 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=21.1
Q ss_pred ceeEeccCceeeeeeec--CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva~In 30 (146)
++||=|||+||+.+.|. .-..+|++ .|
T Consensus 124 tvgIiG~G~IG~~vA~~l~afG~~V~~-~~ 152 (303)
T PRK06436 124 SLGILGYGGIGRRVALLAKAFGMNIYA-YT 152 (303)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEE-EC
Confidence 68999999999988776 22467877 65
No 72
>PRK13243 glyoxylate reductase; Reviewed
Probab=45.42 E-value=7.3 Score=33.02 Aligned_cols=26 Identities=42% Similarity=0.632 Sum_probs=20.7
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~In 30 (146)
+|||=|||+||+.+.|. .+ .+|++ .+
T Consensus 152 tvgIiG~G~IG~~vA~~l~~~G-~~V~~-~d 180 (333)
T PRK13243 152 TIGIIGFGRIGQAVARRAKGFG-MRILY-YS 180 (333)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CEEEE-EC
Confidence 69999999999998887 44 57766 53
No 73
>PLN02477 glutamate dehydrogenase
Probab=43.98 E-value=8.2 Score=34.09 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=25.2
Q ss_pred cceeEeccCceeeeeeec--CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS--QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~~~~~vva~Ind~ 32 (146)
.+|.|-|||..|+.+.+. .....||| |.|.
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVa-VsD~ 238 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVA-VSDI 238 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEE-EECC
Confidence 379999999999998887 45589999 8875
No 74
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=43.59 E-value=9.4 Score=32.44 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=24.9
Q ss_pred CcceeEeccCceeeeeeec---CCCceEEEEecCC
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~~~~vva~Ind~ 32 (146)
++|+||=|.|+||+..++. ++.+++++ +-|.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvA-Vvdi 37 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGA-MVGI 37 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEE-EEeC
Confidence 3689999999999875544 68899999 7655
No 75
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=43.43 E-value=7.1 Score=29.23 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=19.6
Q ss_pred CcceeEeccCceeeeeeec--CCCceEEE
Q psy6886 1 MSKIGINGFGRIGLNNLNS--QPCLRLVS 27 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~--~~~~~vva 27 (146)
|.|||+=|+|++|+...|. ....+|..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~ 29 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTV 29 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEe
Confidence 8899999999999888887 44577666
No 76
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=41.62 E-value=11 Score=32.12 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.8
Q ss_pred CcceeEec-cCceeeeeeec---CCCceEEEEe
Q psy6886 1 MSKIGING-FGRIGLNNLNS---QPCLRLVSMV 29 (146)
Q Consensus 1 ~~kv~ing-fgriGr~v~r~---~~~~~vva~I 29 (146)
|.||+|.| -|.+|+.+.|. ++.+++++ +
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~-~ 34 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTA-L 34 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEE-E
Confidence 47999998 89999999998 78889988 6
No 77
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=40.89 E-value=11 Score=31.65 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=24.9
Q ss_pred CcceeEeccCceeeeeeec---CCCceEEEEecCC
Q psy6886 1 MSKIGINGFGRIGLNNLNS---QPCLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~---~~~~~vva~Ind~ 32 (146)
++||||=|-|+||+..++. .+.+++++ +-|+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elva-V~d~ 34 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVA-MVGI 34 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEE-EEeC
Confidence 4689999999999866554 67899999 7664
No 78
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=40.80 E-value=20 Score=30.77 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=28.8
Q ss_pred CCCCccccchhHHHHHhhhceeeeeeeeeeeeccCc
Q psy6886 46 PSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTA 81 (146)
Q Consensus 46 ~s~~cttnclaPl~kvi~~~fgI~~g~mTtvha~t~ 81 (146)
.++.|++.++.--++-|+++++|++-.+++..+.+.
T Consensus 135 anPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSG 170 (344)
T PLN02383 135 ANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASG 170 (344)
T ss_pred ECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccc
Confidence 367799999988888899999997766777666554
No 79
>PLN03139 formate dehydrogenase; Provisional
Probab=40.06 E-value=9.4 Score=33.37 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.7
Q ss_pred ceeEeccCceeeeeeec--CCCceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva 27 (146)
+|||=|+|+||+.+.|. .-..+|++
T Consensus 201 tVGIVG~G~IG~~vA~~L~afG~~V~~ 227 (386)
T PLN03139 201 TVGTVGAGRIGRLLLQRLKPFNCNLLY 227 (386)
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence 68999999999988887 23366666
No 80
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=39.23 E-value=25 Score=31.02 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=22.5
Q ss_pred eeecccCccceeeeeecCCCCC-cceEEEeeecCCe
Q psy6886 104 IIPAATGAAKAVGKVIPALNGK-LTGMAFRVPVANV 138 (146)
Q Consensus 104 iIP~sTgaakav~kviP~L~Gk-~~g~a~~VP~~~~ 138 (146)
+-.+|.|.+.++.-.||++.|- +----++=++|++
T Consensus 274 ~PhTSCGCFeav~FYiPEvDG~G~v~R~y~getP~G 309 (470)
T COG1614 274 YPHTSCGCFEAVVFYIPEVDGIGIVHREYRGETPNG 309 (470)
T ss_pred CCCCccceeeEEEEeccccccceeeecCcCCCCCCC
Confidence 3457788888999899998772 2122345555554
No 81
>PRK09414 glutamate dehydrogenase; Provisional
Probab=37.76 E-value=11 Score=33.68 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=24.8
Q ss_pred cceeEeccCceeeeeeec--CCCceEEEEecC
Q psy6886 2 SKIGINGFGRIGLNNLNS--QPCLRLVSMVSD 31 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~~~~~vva~Ind 31 (146)
.+|.|-|||..|+.+.+. .-..+||+ |+|
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVa-vsD 263 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVT-CSD 263 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEE-EEc
Confidence 479999999999988887 44589999 988
No 82
>PRK08374 homoserine dehydrogenase; Provisional
Probab=37.36 E-value=8.7 Score=32.66 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=23.7
Q ss_pred CcceeEeccCceeeeeeec-C-----------CCceEEEEecC
Q psy6886 1 MSKIGINGFGRIGLNNLNS-Q-----------PCLRLVSMVSD 31 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~-~-----------~~~~vva~Ind 31 (146)
++||+|=|||-+|+-+.|. . -+++|++ |.|
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~Vva-V~d 43 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVS-ITD 43 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEE-EEe
Confidence 4789999999999987765 1 1488999 876
No 83
>PRK06349 homoserine dehydrogenase; Provisional
Probab=37.33 E-value=9.4 Score=33.45 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=23.5
Q ss_pred cceeEeccCceeeeeeec---C---------CCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS---Q---------PCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~---~---------~~~~vva~Ind~ 32 (146)
+||||=|||.+|+.+.+. + .++++++ |-|.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~-V~~~ 45 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKK-VAVR 45 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEE-EEeC
Confidence 789999999999987664 1 2688888 7553
No 84
>KOG0069|consensus
Probab=35.32 E-value=9 Score=33.12 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=15.1
Q ss_pred ceeEeccCceeeeeeec
Q psy6886 3 KIGINGFGRIGLNNLNS 19 (146)
Q Consensus 3 kv~ingfgriGr~v~r~ 19 (146)
+|||=||||||..+.+.
T Consensus 164 ~vgilG~G~IG~~ia~r 180 (336)
T KOG0069|consen 164 TVGILGLGRIGKAIAKR 180 (336)
T ss_pred EEEEecCcHHHHHHHHh
Confidence 69999999999888765
No 85
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=34.28 E-value=13 Score=32.35 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.0
Q ss_pred ceeEeccCceeeeeeec---CCCceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva 27 (146)
+|||=|+|+||+.+.|. .+ ++|++
T Consensus 118 tvGIIG~G~IG~~vA~~l~a~G-~~V~~ 144 (378)
T PRK15438 118 TVGIVGVGNVGRRLQARLEALG-IKTLL 144 (378)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CEEEE
Confidence 69999999999988876 44 67777
No 86
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=33.72 E-value=17 Score=30.86 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=24.4
Q ss_pred CcceeEecc-Cceeeeeeec---CCCceEEEEecC
Q psy6886 1 MSKIGINGF-GRIGLNNLNS---QPCLRLVSMVSD 31 (146)
Q Consensus 1 ~~kv~ingf-griGr~v~r~---~~~~~vva~Ind 31 (146)
|.||+|-|- |.+|+.+.|. .+.+++++ +-+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~-v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVA-VTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEE-EEC
Confidence 689999997 8999988887 67788877 543
No 87
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=33.54 E-value=14 Score=24.48 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=15.1
Q ss_pred eeeecCCCCCcceEEEeeec
Q psy6886 116 GKVIPALNGKLTGMAFRVPV 135 (146)
Q Consensus 116 ~kviP~L~Gk~~g~a~~VP~ 135 (146)
.+.-|++.||+|||-+-.+.
T Consensus 18 ~~~~p~~A~KITGMLLEmd~ 37 (64)
T smart00517 18 QALEPELAGKITGMLLEMDN 37 (64)
T ss_pred HhhCcccCCcCeeeeeCCCH
Confidence 34568999999999775543
No 88
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=33.43 E-value=16 Score=30.35 Aligned_cols=41 Identities=32% Similarity=0.262 Sum_probs=30.7
Q ss_pred cceeEeccCceeeeeeec--C--CCceEEEEecCC--cchhhhhhhcc
Q psy6886 2 SKIGINGFGRIGLNNLNS--Q--PCLRLVSMVSDV--LDVLYSELLLP 43 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~--~~~~vva~Ind~--~d~~y~~~~~~ 43 (146)
+||||=|.|.||..+++. + .++|.++ +-|- -...-..-++.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~-v~D~~~ek~~~~~~~~~ 47 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVA-VYDRDEEKAKELEASVG 47 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEE-EecCCHHHHHHHHhhcC
Confidence 589999999999999987 3 3699999 8765 34444444555
No 89
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=33.37 E-value=14 Score=31.77 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecC
Q psy6886 89 PSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVA 136 (146)
Q Consensus 89 p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~ 136 (146)
|...+|. .-.++-++||.+.+.++.-.|++++.+..-++.|..
T Consensus 81 ~~~~~w~-----gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~ 123 (334)
T PRK08955 81 IADTDWS-----GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVK 123 (334)
T ss_pred hhhCCcc-----CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCC
Confidence 6667896 238999999999999989899999888888888843
No 90
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=33.15 E-value=16 Score=26.00 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.2
Q ss_pred ceeEec-cCceeeeeeec---CCCceEEEEe
Q psy6886 3 KIGING-FGRIGLNNLNS---QPCLRLVSMV 29 (146)
Q Consensus 3 kv~ing-fgriGr~v~r~---~~~~~vva~I 29 (146)
||+|=| .|.+|+..+|. ++.++++. +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~-~ 30 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVA-L 30 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEE-E
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEE-e
Confidence 789999 99999998887 89999888 5
No 91
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=32.29 E-value=22 Score=24.98 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=6.0
Q ss_pred ceeEeccCceeeeee
Q psy6886 3 KIGINGFGRIGLNNL 17 (146)
Q Consensus 3 kv~ingfgriGr~v~ 17 (146)
+|-|||+.|.|+.||
T Consensus 28 RvFiNgYar~g~Vif 42 (88)
T PF11491_consen 28 RVFINGYARNGFVIF 42 (88)
T ss_dssp -----TTSS--EEE-
T ss_pred eeeecccccceEEEE
Confidence 678999999998765
No 92
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=32.13 E-value=18 Score=31.28 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=24.8
Q ss_pred CcceeEeccCceeeeeeec------------CCCceEEEEecCC
Q psy6886 1 MSKIGINGFGRIGLNNLNS------------QPCLRLVSMVSDV 32 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~------------~~~~~vva~Ind~ 32 (146)
++||+|-|||-+|+.+.|. .-++++++ |-|.
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~-v~~~ 45 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVA-VADR 45 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEE-EEec
Confidence 4799999999999998875 24788888 7553
No 93
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=31.86 E-value=17 Score=32.83 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=20.7
Q ss_pred ceeEeccCceeeeeeec--CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva~In 30 (146)
++||=|||+||+.+.|. .-..+|++ .+
T Consensus 140 tvgIiG~G~IG~~vA~~l~~fG~~V~~-~d 168 (525)
T TIGR01327 140 TLGVIGLGRIGSIVAKRAKAFGMKVLA-YD 168 (525)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEE-EC
Confidence 69999999999988876 22357777 54
No 94
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=30.42 E-value=17 Score=30.58 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=20.1
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~In 30 (146)
+|||=|||+||+.+.|. .+ .+|.+ .+
T Consensus 138 tvgIvG~G~IG~~vA~~l~afG-~~V~~-~~ 166 (312)
T PRK15469 138 TIGILGAGVLGSKVAQSLQTWG-FPLRC-WS 166 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEE-Ee
Confidence 69999999999988875 34 56666 54
No 95
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=29.27 E-value=15 Score=29.98 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=23.8
Q ss_pred cceeEeccCceeeeeeec--CCCceEEEEecC
Q psy6886 2 SKIGINGFGRIGLNNLNS--QPCLRLVSMVSD 31 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~~~~~vva~Ind 31 (146)
.+|.|-|||..|..+.+. .....+|+ |.|
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~-vsD 63 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVA-VSD 63 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEE-EEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEE-Eec
Confidence 378999999999999888 34588889 865
No 96
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=29.17 E-value=20 Score=32.39 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=20.7
Q ss_pred ceeEeccCceeeeeeec---CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS---QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~---~~~~~vva~In 30 (146)
++||=|||+||+.+.|. .+ .+|++ .+
T Consensus 142 tvgIiG~G~IG~~vA~~l~~fG-~~V~~-~d 170 (526)
T PRK13581 142 TLGIIGLGRIGSEVAKRAKAFG-MKVIA-YD 170 (526)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CEEEE-EC
Confidence 69999999999988776 44 57777 54
No 97
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=29.02 E-value=19 Score=28.23 Aligned_cols=25 Identities=16% Similarity=0.523 Sum_probs=20.2
Q ss_pred ceeEeccCceeeeeeec--CCCceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva 27 (146)
+++|=|||++|+.+.|. ....+|+.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 69999999999998887 34467775
No 98
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=28.98 E-value=19 Score=30.47 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=20.8
Q ss_pred ceeEeccCceeeeeeec--CCCceEEEEec
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVSMVS 30 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva~In 30 (146)
+|||=|+|+||+.+.+. .-..+|++ .+
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~-~d 176 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITA-YD 176 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEE-Ee
Confidence 69999999999988876 23367777 53
No 99
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=27.34 E-value=22 Score=30.97 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=19.8
Q ss_pred ceeEeccCceeeeeeec--CCCceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva 27 (146)
+|||=|+|+||+.+.|. .-.++|++
T Consensus 118 tvGIIG~G~IG~~va~~l~a~G~~V~~ 144 (381)
T PRK00257 118 TYGVVGAGHVGGRLVRVLRGLGWKVLV 144 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 69999999999988876 22367776
No 100
>PRK06813 homoserine dehydrogenase; Validated
Probab=27.25 E-value=24 Score=30.41 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.4
Q ss_pred CcceeEeccCceeeeeeec------------CCCceEEEEecC
Q psy6886 1 MSKIGINGFGRIGLNNLNS------------QPCLRLVSMVSD 31 (146)
Q Consensus 1 ~~kv~ingfgriGr~v~r~------------~~~~~vva~Ind 31 (146)
+++|+|-|||.+|+-+.|. .-+++|++ |-|
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~-i~~ 43 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSG-VLG 43 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEE-EEe
Confidence 4789999999999988875 13577887 744
No 101
>PRK14030 glutamate dehydrogenase; Provisional
Probab=24.79 E-value=26 Score=31.38 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=23.4
Q ss_pred cceeEeccCceeeeeeec--CCCceEEEEecCC
Q psy6886 2 SKIGINGFGRIGLNNLNS--QPCLRLVSMVSDV 32 (146)
Q Consensus 2 ~kv~ingfgriGr~v~r~--~~~~~vva~Ind~ 32 (146)
.+|.|-|||..|....+. .....||+ |+|.
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVa-vSD~ 260 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVT-ISGP 260 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEE-EEcC
Confidence 379999999999877776 44588888 7663
No 102
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=24.70 E-value=10 Score=26.63 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=16.5
Q ss_pred ccCceeeeeeec---CC---CceEEEEecC
Q psy6886 8 GFGRIGLNNLNS---QP---CLRLVSMVSD 31 (146)
Q Consensus 8 gfgriGr~v~r~---~~---~~~vva~Ind 31 (146)
|||.||+-+.+. .. ++++++ |-|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~-v~~ 29 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVG-VAD 29 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEE-EEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEE-EEE
Confidence 899999999987 22 789988 744
No 103
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=24.70 E-value=24 Score=30.51 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=22.6
Q ss_pred ceeEeccCceeeeeeec--CCCceEEEEecCC
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVSMVSDV 32 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva~Ind~ 32 (146)
+|||=|+|+||+.+.+. .-.++|+. .+++
T Consensus 18 tVGIIG~GsIG~amA~nL~d~G~~ViV-~~r~ 48 (335)
T PRK13403 18 TVAVIGYGSQGHAQAQNLRDSGVEVVV-GVRP 48 (335)
T ss_pred EEEEEeEcHHHHHHHHHHHHCcCEEEE-EECc
Confidence 68999999999988877 33478877 5554
No 104
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=24.39 E-value=63 Score=23.64 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=16.0
Q ss_pred CceeeeeeecCCCceEEE
Q psy6886 10 GRIGLNNLNSQPCLRLVS 27 (146)
Q Consensus 10 griGr~v~r~~~~~~vva 27 (146)
|+||.+..|.++++++.-
T Consensus 67 G~iGkL~V~kSGkv~l~i 84 (131)
T PF05132_consen 67 GQIGKLRVHKSGKVTLKI 84 (131)
T ss_pred CeeEEEEEEeCCcEEEEE
Confidence 799999999999999765
No 105
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.78 E-value=29 Score=31.81 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=23.6
Q ss_pred ceeEeccCceeeeeeec--CCCceEEEEe-cCC
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVSMV-SDV 32 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva~I-nd~ 32 (146)
+|-|=||||.|+.+.|. ..+.++++ | +|+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvv-ID~d~ 433 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITV-LERDI 433 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEE-EECCH
Confidence 57789999999999987 56688888 7 544
No 106
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=21.54 E-value=66 Score=27.79 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=41.9
Q ss_pred hhHHHHHhhhceeeeeeeeeeeeccCccccccCCCCCCCCcCcccccce--eeecccCccceeeeeecCCCC--------
Q psy6886 55 LLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQN--IIPAATGAAKAVGKVIPALNG-------- 124 (146)
Q Consensus 55 laPl~kvi~~~fgI~~g~mTtvha~t~~Q~~~D~p~~~~~r~~r~a~~n--iIP~sTgaakav~kviP~L~G-------- 124 (146)
..|.++.|.+++.+.+ +|++ .|||.......+ ..|....+.+.+.+.+..|.+
T Consensus 182 Flp~I~~l~~~~~vv~---------------ld~~--~DyR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (362)
T PF03969_consen 182 FLPFIDLLKRRCDVVE---------------LDGG--VDYRRRGAPPAPVYFYPLDEEADAALERLFQRLTGGEPEEPRT 244 (362)
T ss_pred HHHHHHHHHhceEEEE---------------ecCC--CchhhhcccccccccCcchHHHHHHHHHHHHHhccccCCCCce
Confidence 4577788887766544 4543 588876544333 445444444455554444433
Q ss_pred -CcceEEEeeecCCeeEEEeE
Q psy6886 125 -KLTGMAFRVPVANVSVVDLT 144 (146)
Q Consensus 125 -k~~g~a~~VP~~~~s~~dlt 144 (146)
.+.|-.+.||-....++.++
T Consensus 245 l~v~gR~i~v~~~~~~va~F~ 265 (362)
T PF03969_consen 245 LEVGGREIPVPRACGGVAWFD 265 (362)
T ss_pred eEEeeeEEeeecccCCEEEec
Confidence 23456777887777776654
No 107
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=21.48 E-value=30 Score=31.88 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.3
Q ss_pred ceeEeccCceeeeeeec--CCCceEEEEe
Q psy6886 3 KIGINGFGRIGLNNLNS--QPCLRLVSMV 29 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~~~~~vva~I 29 (146)
+|=|=||||+|+.+.|. ....+++. |
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvv-I 429 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTV-L 429 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEE-E
Confidence 46688999999999987 45578888 7
No 108
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=20.86 E-value=46 Score=28.65 Aligned_cols=48 Identities=17% Similarity=0.366 Sum_probs=39.5
Q ss_pred CCCCCCCcCcccccceeeecccCccceeeeeecCCCCCcceEEEeeecCCe
Q psy6886 88 GPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANV 138 (146)
Q Consensus 88 ~p~~~~~r~~r~a~~niIP~sTgaakav~kviP~L~Gk~~g~a~~VP~~~~ 138 (146)
.|...+|++. ...|+-++||.+.+.++.-.|++++.+...++.|.+++
T Consensus 85 ~p~~~~w~~~---gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dv 132 (338)
T PLN02358 85 NPEDIPWGEA---GADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDA 132 (338)
T ss_pred CcccCccccc---CCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCC
Confidence 3666689643 24799999999999999999999999999999887765
No 109
>PRK08605 D-lactate dehydrogenase; Validated
Probab=20.04 E-value=24 Score=29.77 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=19.4
Q ss_pred ceeEeccCceeeeeeec--C-CCceEEE
Q psy6886 3 KIGINGFGRIGLNNLNS--Q-PCLRLVS 27 (146)
Q Consensus 3 kv~ingfgriGr~v~r~--~-~~~~vva 27 (146)
||||=|+|+||+.+.+. . -..+|.+
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~~g~~V~~ 175 (332)
T PRK08605 148 KVAVIGTGRIGLAVAKIFAKGYGSDVVA 175 (332)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 79999999999987765 2 2467776
Done!