RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6886
(146 letters)
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 182 bits (464), Expect = 5e-57
Identities = 75/95 (78%), Positives = 83/95 (87%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L LAKV+H+ F I+EGLMTTVHATTATQKTVDGPS K WR GRGA+QNIIP++TGA
Sbjct: 237 TNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGA 296
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AKAVGKV+P LNGKLTGMAFRVP NVSVVDLT R
Sbjct: 297 AKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCR 331
Score = 29.8 bits (67), Expect = 0.50
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 2 SKIGINGFGRIG 13
+KIGINGFGRIG
Sbjct: 86 TKIGINGFGRIG 97
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 157
Score = 157 bits (399), Expect = 3e-50
Identities = 65/89 (73%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 58 LAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGK 117
LAKV++DNF I +GLMTTVHA TA QK VD PS K R GR AA NIIP +TGAAKAVG
Sbjct: 4 LAKVLNDNFGIEKGLMTTVHAYTADQKLVD-PSHKDLRRGRAAAPNIIPTSTGAAKAVGL 62
Query: 118 VIPALNGKLTGMAFRVPVANVSVVDLTVR 146
V+P L GKLTGMAFRVP NVSVVDLTV
Sbjct: 63 VLPELKGKLTGMAFRVPTPNVSVVDLTVE 91
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 337
Score = 162 bits (411), Expect = 5e-50
Identities = 76/110 (69%), Positives = 84/110 (76%), Gaps = 8/110 (7%)
Query: 45 EPSFVTVSNS------LLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRD 96
+ S VSN+ L LAKV++D F IVEGLMTTVHA+TA Q TVDGPS GK WR
Sbjct: 141 DKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRA 200
Query: 97 GRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
GR A NIIPA+TGAAKAVGKVIP LNGKLTGMAFRVPV +VSVVDLT +
Sbjct: 201 GRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVPDVSVVDLTCK 250
Score = 28.6 bits (64), Expect = 1.2
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 4 KLGINGFGRIG 14
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 331
Score = 155 bits (393), Expect = 2e-47
Identities = 78/95 (82%), Positives = 85/95 (89%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L LAKVI+DNF I+EGLMTTVHATTATQKTVDGPS K WR GRGA+QNIIP++TGA
Sbjct: 152 TNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGA 211
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AKAVGKV+P LNGKLTGMAFRVP NVSVVDLTVR
Sbjct: 212 AKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVR 246
Score = 26.6 bits (58), Expect = 5.9
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 3 KIGINGFGRIG---LNNLNSQPCLRLVSMVSDVLDVLYSELLL 42
K+GINGFGRIG + + +V+ ++D+LD Y +L
Sbjct: 4 KVGINGFGRIGRIVFRAAQKRSDIEIVA-INDLLDADYMAYML 45
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 335
Score = 155 bits (393), Expect = 4e-47
Identities = 62/94 (65%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L +AKV++D F I +GLMTTVHA T QK VDGP K R R AA NIIP +TGAA
Sbjct: 155 NCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAA 213
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAVG V+P L GKLTGMA RVP NVSVVDLTV
Sbjct: 214 KAVGLVLPELKGKLTGMAIRVPTPNVSVVDLTVE 247
Score = 32.5 bits (75), Expect = 0.047
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 1 MSKIGINGFGRIGLN 15
M K+ INGFGRIG
Sbjct: 1 MIKVAINGFGRIGRL 15
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. This model represents glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), the enzyme responsible for the
interconversion of 1,3-diphosphoglycerate and
glyceraldehyde-3-phosphate, a central step in glycolysis
and gluconeogenesis. Forms exist which utilize NAD (EC
1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In
some species, NAD- and NADP- utilizing forms exist,
generally being responsible for reactions in the
anabolic and catabolic directions respectively. Two PFAM
models cover the two functional domains of this protein;
pfam00044 represents the N-terminal NAD(P)-binding
domain and pfam02800 represents the C-terminal catalytic
domain. An additional form of gap gene is found in gamma
proteobacteria and is responsible for the conversion of
erythrose-4-phosphate (E4P) to 4-phospho-erythronate in
the biosynthesis of pyridoxine. This pathway of
pyridoxine biosynthesis appears to be limited, however,
to a relatively small number of bacterial species
although it is prevalent among the gamma-proteobacteria.
This enzyme is described by TIGR001532. These sequences
generally score between trusted and noise to this GAPDH
model due to the close evolutionary relationship. There
exists the possiblity that some forms of GAPDH may be
bifunctional and act on E4P in species which make
pyridoxine and via hydroxythreonine and lack a separate
E4PDH enzyme (for instance, the GAPDH from Bacillus
stearothermophilus has been shown to posess a limited
E4PD activity as well as a robust GAPDH activity). There
are a great number of sequences in the databases which
score between trusted and noise to this model, nearly
all of them due to fragmentary sequences. It seems that
study of this gene has been carried out in many species
utilizing PCR probes which exclude the extreme ends of
the consenses used to define this model. The noise level
is set relative not to E4PD, but the next closest
outliers, the class II GAPDH's (found in archaea,
TIGR01546) and aspartate semialdehyde dehydrogenase
(ASADH, TIGR01296) both of which have highest-scoring
hits around -225 to the prior model [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 326
Score = 153 bits (390), Expect = 8e-47
Identities = 58/94 (61%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKV+ + F IV GLMTTVH+ T Q VDGP R R AA NIIP +TGAA
Sbjct: 154 NCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPHKD-LRRARAAALNIIPTSTGAA 212
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KA+GKV+P L GKLTGMA RVP NVS+VDL V
Sbjct: 213 KAIGKVLPELAGKLTGMAIRVPTPNVSLVDLVVN 246
Score = 31.5 bits (72), Expect = 0.12
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 3 KIGINGFGRIGLNNL----NSQPCLRLVSMVSDVLDVLYSELLLPRE------PSFVTVS 52
K+GINGFGRIG L V ++D+ D+ Y LL + VT
Sbjct: 1 KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTAD 60
Query: 53 NSLLTLAKVIHDNFEIV 69
L V++ I
Sbjct: 61 EDGL----VVNGKEVIS 73
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
Length = 338
Score = 145 bits (366), Expect = 2e-43
Identities = 72/95 (75%), Positives = 82/95 (86%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L LAKVI+D F IVEGLMTTVH+ TATQKTVDGPS K WR GR A+ NIIP++TGA
Sbjct: 158 TNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA 217
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AKAVGKV+P+LNGKLTGM+FRVP +VSVVDLTVR
Sbjct: 218 AKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVR 252
Score = 25.8 bits (56), Expect = 9.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
+IGINGFGRIG
Sbjct: 7 RIGINGFGRIG 17
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate
dehydrogenase; Provisional.
Length = 361
Score = 125 bits (315), Expect = 1e-35
Identities = 65/103 (63%), Positives = 75/103 (72%), Gaps = 7/103 (6%)
Query: 51 VSNSLLT---LAKVIH----DNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQN 103
VSN+ T LA ++H + F I GLMTT+H+ TATQKTVDG S K WR GR AA N
Sbjct: 162 VSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVN 221
Query: 104 IIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
IIP+ TGAAKAVG VIP+ GKLTGM+FRVP +VSVVDLT R
Sbjct: 222 IIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFR 264
Score = 27.3 bits (60), Expect = 3.2
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 5 KVGINGFGRIG 15
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 343
Score = 118 bits (298), Expect = 4e-33
Identities = 53/94 (56%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L + KV+ + F I GLMTTVHA T QK +D P L R R Q+IIP TGA
Sbjct: 154 TNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDL-RRARACGQSIIPTTTGA 212
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 145
AKA+ KV+P LNGKL GMA RVP NVS+VDL V
Sbjct: 213 AKALAKVLPHLNGKLHGMALRVPTPNVSLVDLVV 246
Score = 27.4 bits (61), Expect = 2.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 1 MSKIGINGFGRIG 13
+K+ INGFGRIG
Sbjct: 2 KTKVAINGFGRIG 14
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 337
Score = 106 bits (265), Expect = 2e-28
Identities = 53/95 (55%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L +AKV+HDNF I++G MTT H+ T Q+ +D L R R AA NI+P +TGA
Sbjct: 156 TNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDL-RRARAAAVNIVPTSTGA 214
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AKAV VIP L GKL G+A RVP NVSVVDL V+
Sbjct: 215 AKAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQ 249
Score = 27.6 bits (61), Expect = 2.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 1 MSKIGINGFGRIGLNNL 17
M ++ INGFGRIG N L
Sbjct: 1 MIRVAINGFGRIGRNFL 17
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 395
Score = 98.5 bits (245), Expect = 3e-25
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L KV+ F I++G MTT H+ T Q+ +D L R R AA NI+P +TGA
Sbjct: 214 TNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALNIVPTSTGA 272
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AKAV V+P L GKL G+A RVP NVSVVDL V+
Sbjct: 273 AKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQ 307
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 3 KIGINGFGRIGLNNL 17
K+ INGFGRIG N L
Sbjct: 62 KVAINGFGRIGRNFL 76
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 98.0 bits (244), Expect = 7e-25
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L KV+ + F IV+G MTT H+ T Q+ +D L R R AA NI+P +TGA
Sbjct: 231 TNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALNIVPTSTGA 289
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 145
AKAV V+P L GKL G+A RVP NVSVVDL V
Sbjct: 290 AKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVV 323
Score = 27.2 bits (60), Expect = 3.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 3 KIGINGFGRIGLNNL 17
K+ INGFGRIG N L
Sbjct: 77 KVAINGFGRIGRNFL 91
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 477
Score = 85.0 bits (211), Expect = 4e-20
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 60 KVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVI 119
K ++D + IV G + TVH+ T Q +D K R GR A N++ TGAAKAV K +
Sbjct: 299 KAVNDKYGIVNGHVETVHSYTNDQNLIDN-YHKGDRRGRSAPLNMVITETGAAKAVAKAL 357
Query: 120 PALNGKLTGMAFRVPVANVSV 140
P L GKLTG A RVP NVS+
Sbjct: 358 PELAGKLTGNAIRVPTPNVSM 378
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 334
Score = 83.6 bits (207), Expect = 5e-20
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N L + KVIH+ I G MTT+H T TQ +D P L R R ++IP TG+
Sbjct: 154 TNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDL-RRARACGMSLIPTTTGS 212
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVD 142
A A+ ++ P L GKL G A RVP+AN S+ D
Sbjct: 213 ATAITEIFPELKGKLNGHAVRVPLANASLTD 243
Score = 30.5 bits (69), Expect = 0.23
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 4 KVGINGFGRIG 14
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase.
This model represents the small clade of dehydrogenases
in gamma-proteobacteria which utilize NAD+ to oxidize
erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a
precursor for the de novo synthesis of pyridoxine via
4-hydroxythreonine and D-1-deoxyxylulose. This enzyme
activity appears to have evolved from
glyceraldehyde-3-phosphate dehydrogenase, whose
substrate differs only in the lack of one carbon
relative to E4P. Accordingly, this model is very close
to the corresponding models for GAPDH, and those
sequences which hit above trusted here invariably hit
between trusted and noise to the GAPDH model
(TIGR01534). Similarly, it may be found that there are
species outside of the gamma proteobacteria which
synthesize pyridoxine and have more than one aparrent
GAPDH gene of which one may have E4PD activity - this
may necessitate a readjustment of these models.
Alternatively, some of the GAPDH enzymes may prove to be
bifunctional in certain species [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 325
Score = 69.5 bits (170), Expect = 6e-15
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N ++ + K++ D + I G +TT+H+ Q+ +D L R R A+Q+IIP T
Sbjct: 154 TNCIVPVIKLLDDAYGIESGTITTIHSAMNDQQVIDAYHPDL-RRTRAASQSIIPVDTKL 212
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 145
A + + P N + +A RVP NV+ +DL+V
Sbjct: 213 AAGIERFFPQFNDRFEAIAVRVPTVNVTAIDLSV 246
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 65.1 bits (159), Expect = 3e-13
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+N ++ + K++ D F I G +TT+H+ Q+ +D L R R A+Q+IIP T
Sbjct: 156 TNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDL-RRTRAASQSIIPVDTKL 214
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 145
A + ++ P N + ++ RVP NV+ +DL+V
Sbjct: 215 AAGITRIFPQFNDRFEAISVRVPTINVTAIDLSV 248
Score = 30.0 bits (68), Expect = 0.43
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 1 MSKIGINGFGRIGLNNL 17
++ INGFGRIG N L
Sbjct: 1 TIRVAINGFGRIGRNVL 17
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 342
Score = 51.0 bits (122), Expect = 2e-08
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 51 VSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKT-VDGPSGKLWRDGRGAAQNIIPAAT 109
++ +L + + +H+ + + E T +H + + + WR R A I P
Sbjct: 154 IAVALAPVIRALHEVYGVEECSYTAIHGMQPQEPIAARSKNSQDWRQTRVAIDAIAPYRD 213
Query: 110 GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
A+ V K++P L G+++G AF+VPV +D+ VR
Sbjct: 214 NGAETVCKLLPHLVGRISGSAFQVPVKKGCAIDMLVR 250
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase,
NAD binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 149
Score = 33.7 bits (78), Expect = 0.013
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 3 KIGINGFGRIGLN 15
K+GINGFGRIG
Sbjct: 2 KVGINGFGRIGRL 14
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 148
Score = 33.2 bits (77), Expect = 0.016
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 2 KVGINGFGRIG 12
>gnl|CDD|237861 PRK14947, PRK14947, DNA polymerase III subunit beta; Provisional.
Length = 384
Score = 27.4 bits (61), Expect = 2.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 96 DGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMA 130
DG A NIIPA TGAA + A +G L+ M+
Sbjct: 12 DGLQKAANIIPAKTGAAYLRTIWLKAEDGTLSIMS 46
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS
subfamily, TPP-binding module;
1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis. Terpeniods are plant
natural products with important pharmaceutical activity.
DXS catalyzes a transketolase-type condensation of
pyruvate with D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
The formation of DXP leads to the formation of the
terpene precursor IPP (isopentyl diphosphate) and to the
formation of thiamine (vitamin B1) and pyridoxal
(vitamin B6).
Length = 195
Score = 27.1 bits (61), Expect = 3.2
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 81 ATQKTVDGPSGKLWRD-------GRGAAQNIIPAATGAAKA------VGKVIPAL-NGKL 126
T + G SG R G G + I AA G A A KVI + +G L
Sbjct: 50 HTLRQYGGLSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGAL 109
Query: 127 T-GMAF 131
T GMAF
Sbjct: 110 TGGMAF 115
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase.
Length = 409
Score = 26.9 bits (59), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 70 EGLMTTVHATTAT-QKTVDGPSGKLWRDGRGAAQNI 104
++ VH T T +T +G K W+ G+G A+NI
Sbjct: 265 NAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNI 300
>gnl|CDD|197328 cd09094, INPP5c_INPP5J-like, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of inositol polyphosphate
5-phosphatase J and related proteins. INPP5c domain of
Inositol polyphosphate-5-phosphatase J (INPP5J), also
known as PIB5PA or PIPP, and related proteins. This
subfamily belongs to a family of Mg2+-dependent
inositol polyphosphate 5-phosphatases, which hydrolyze
the 5-phosphate from the inositol ring of various
5-position phosphorylated phosphoinositides (PIs) and
inositol phosphates (IPs), and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. INPP5J hydrolyzes PI(4,5)P2, I(1,4,5)P3, and
I(1,3,4,5)P4 at ruffling membranes. These proteins
contain a C-terminal, SKIP carboxyl homology domain
(SKICH), which may direct plasma membrane ruffle
localization.
Length = 300
Score = 26.9 bits (60), Expect = 4.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 12 IGLNNLNSQPCLRLVSMVS-DVLDVLYSELLLPREPSFVTVSN------SLLTLAKVIHD 64
IGL +NS+P + ++ D L+ ++L P+ +V VS+ LL K+ H
Sbjct: 37 IGLQEVNSKPVQFVSDLIFDDPWSDLFMDILSPKG--YVKVSSIRLQGLLLLVFVKIQHL 94
Query: 65 NF 66
F
Sbjct: 95 PF 96
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 26.6 bits (58), Expect = 6.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 16 NLNSQPCLRLVSMVSDVLDVLYSELLLP 43
+ P L LV D + V S+LLL
Sbjct: 244 DFKEDPVLGLVCSPQDGVTVSLSDLLLI 271
>gnl|CDD|222859 PHA02535, P, terminase ATPase subunit; Provisional.
Length = 581
Score = 26.2 bits (58), Expect = 8.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 90 SGKLWRDGRGAAQNIIPAATGAAKAVGKVIP 120
SG+L+ GR + I + A G++ P
Sbjct: 291 SGELFNRGRPKRERIEIDTSHEALDGGRLCP 321
>gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 341
Score = 25.9 bits (58), Expect = 8.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 1 MSKIGINGFGRIG 13
M K+G+NG+G IG
Sbjct: 1 MIKVGVNGYGTIG 13
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,137,411
Number of extensions: 623114
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 55
Length of query: 146
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 58
Effective length of database: 7,034,450
Effective search space: 407998100
Effective search space used: 407998100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)