RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6886
(146 letters)
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 217 bits (556), Expect = 5e-72
Identities = 78/94 (82%), Positives = 84/94 (89%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKVI+DNF I+EGLMTTVHATTATQKTVDGPS K WR GRGA+QNIIP++TGAA
Sbjct: 152 NCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAA 211
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAVGKV+P LNGKLTGMAFRVP NVSVVDLTVR
Sbjct: 212 KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVR 245
Score = 34.0 bits (79), Expect = 0.009
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 3 KVGINGFGRIG 13
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 215 bits (551), Expect = 4e-71
Identities = 75/94 (79%), Positives = 79/94 (84%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKVIH+ F IVEGLMTTVH+ TATQKTVDGPS K WRDGRGA QNIIPA+TGAA
Sbjct: 159 NCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAA 218
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV KVIP L GKLTGMAFRVP +VSVVDLT R
Sbjct: 219 KAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCR 252
Score = 34.5 bits (80), Expect = 0.008
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
+GINGFGRIG
Sbjct: 9 TVGINGFGRIG 19
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 215 bits (550), Expect = 5e-71
Identities = 70/94 (74%), Positives = 78/94 (82%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKVI+D F I EGLMTTVH+ TATQKTVDGPS K WR GR A+ NIIP++TGAA
Sbjct: 153 NCLAPLAKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAA 212
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAVGKV+P L GKLTGMAFRVP +VSVVDLTV+
Sbjct: 213 KAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVK 246
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 1 MSKIGINGFGRIG 13
M ++ INGFGRIG
Sbjct: 1 MVRVAINGFGRIG 13
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 215 bits (549), Expect = 7e-71
Identities = 74/94 (78%), Positives = 81/94 (86%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKVIHDNF I+EGLMTTVHA TATQKTVDGPS K WR GR A+ NIIP++TGAA
Sbjct: 157 NCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAA 216
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAVGKV+P LNGKLTGM+FRVP +VSVVDLTVR
Sbjct: 217 KAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVR 250
Score = 34.5 bits (80), Expect = 0.007
Identities = 12/15 (80%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
Query: 1 MS--KIGINGFGRIG 13
M KIGINGFGRIG
Sbjct: 1 MGKIKIGINGFGRIG 15
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 213 bits (544), Expect = 7e-70
Identities = 71/96 (73%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGRGAAQNIIPAATG 110
N L LAK+I+D F IVEGLMTTVH+ TA Q TVDGPS GK WR GR A NIIPA+TG
Sbjct: 171 NCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTG 230
Query: 111 AAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AAKAVGKVIPALNGKLTGMA RVP +VSVVDLT +
Sbjct: 231 AAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCK 266
Score = 34.1 bits (79), Expect = 0.009
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
+GINGFGRIG
Sbjct: 19 TLGINGFGRIG 29
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 212 bits (542), Expect = 2e-69
Identities = 59/95 (62%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 53 NSLLTLAKV-IHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
N L + V + + F + GLMTT+H+ TATQKTVDG S K WR GR AA NIIP+ TGA
Sbjct: 169 NCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGA 228
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AKAVG VIP+ GKLTGM+FRVP +VSVVDLT
Sbjct: 229 AKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFT 263
Score = 34.5 bits (80), Expect = 0.007
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 4 KVGINGFGRIG 14
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 210 bits (538), Expect = 3e-69
Identities = 84/94 (89%), Positives = 85/94 (90%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKVIHDNF IVEGLMTTVHA TATQKTVDGPSGKLWRDGRGA QNIIPA+TGAA
Sbjct: 155 NCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAA 214
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAVGKVIP LNGKLTGMAFRVP ANVSVVDLT R
Sbjct: 215 KAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCR 248
Score = 34.9 bits (81), Expect = 0.005
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 1 MSKIGINGFGRIG 13
K+G+NGFGRIG
Sbjct: 3 KVKVGVNGFGRIG 15
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 210 bits (537), Expect = 7e-69
Identities = 70/96 (72%), Positives = 76/96 (79%), Gaps = 2/96 (2%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPS--GKLWRDGRGAAQNIIPAATG 110
N L LAKVI+D F IVEGLMTTVHA+TA Q VDGPS GK WR GR A NIIPA+TG
Sbjct: 164 NCLAPLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTG 223
Query: 111 AAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AAKAVGKV+P LNGKLTG+AFRVP+ VSVVDL R
Sbjct: 224 AAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCR 259
Score = 34.1 bits (79), Expect = 0.010
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 13 KLGINGFGRIG 23
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 180 bits (458), Expect = 4e-57
Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKL-WRDGRGAAQNIIPAATGA 111
NSL +AKV++D+F +VEGLMTT+HA T Q T D P K R R AA+NIIP +TGA
Sbjct: 156 NSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGA 215
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AKA+GKVIP ++GKL G A RVPVA S+ +LTV
Sbjct: 216 AKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVV 250
Score = 33.7 bits (78), Expect = 0.012
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
K+ INGFGRIG
Sbjct: 6 KVAINGFGRIG 16
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 177 bits (451), Expect = 5e-56
Identities = 53/94 (56%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L AKV+H+ F IV G+MTTVH+ T Q+ +D P K R R AA++IIP TGAA
Sbjct: 154 NCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAA 212
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV V+P L GKL GMA RVP NVSVVDL
Sbjct: 213 KAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAE 246
Score = 33.6 bits (78), Expect = 0.012
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 3 KVGINGFGRIG 13
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 172 bits (438), Expect = 5e-54
Identities = 53/94 (56%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKV+H++F I +GLMTTVHA T Q+ +D P R R AA +IIP +TGAA
Sbjct: 177 NCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAA 235
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAVG V+P L GKL G + RVPV S+VDLTV+
Sbjct: 236 KAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQ 269
Score = 33.7 bits (78), Expect = 0.014
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
K+ INGFGRIG
Sbjct: 23 KLAINGFGRIG 33
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 169 bits (432), Expect = 4e-53
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L KV+++ F + +G M TVHA T Q+ +D P K +R R AA NI+P TGAA
Sbjct: 155 NCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAA 213
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KA+G+VIP L GKL G A RVPV + S++DLTV
Sbjct: 214 KAIGEVIPELKGKLDGTARRVPVPDGSLIDLTVV 247
Score = 33.6 bits (78), Expect = 0.013
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 4 KVGINGFGRIG 14
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 168 bits (428), Expect = 1e-52
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
NSL + KV+ + F + + LMTTVH+ T Q+ +D P K R R AA NIIP TGAA
Sbjct: 152 NSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAA 210
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KA V+P+L G+ GMA RVP A S+ D+T
Sbjct: 211 KATALVLPSLKGRFDGMALRVPTATGSISDITAL 244
Score = 33.6 bits (78), Expect = 0.013
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 2 KVGINGFGRIG 12
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 165 bits (420), Expect = 3e-51
Identities = 53/94 (56%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L + KV+ + F I GLMTTVHA T QK +D P K R R Q+IIP TGAA
Sbjct: 157 NCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAA 215
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KA+ KV+P LNGKL GMA RVP NVS+VDL V
Sbjct: 216 KALAKVLPHLNGKLHGMALRVPTPNVSLVDLVVD 249
Score = 34.4 bits (80), Expect = 0.008
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 1 MSKIGINGFGRIG 13
M+++ INGFGRIG
Sbjct: 4 MTRVAINGFGRIG 16
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 163 bits (416), Expect = 7e-51
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L KV+ F I++G MTT H+ T Q+ +D + R R A NI+P +TGAA
Sbjct: 156 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAA 214
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV V+P L GKL G+A RVP NVSVVDL V+
Sbjct: 215 KAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQ 248
Score = 33.6 bits (78), Expect = 0.013
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
K+ INGFGRIG
Sbjct: 3 KVAINGFGRIG 13
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 164 bits (417), Expect = 1e-50
Identities = 52/94 (55%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L +AKV+HDNF I++G MTT H+ T Q+ +D + R R AA NI+P TGAA
Sbjct: 158 NCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAA 216
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV VIP L GKL G+A RVP NVSVVDL V+
Sbjct: 217 KAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQ 250
Score = 33.7 bits (78), Expect = 0.012
Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 1 MS-KIGINGFGRIG 13
M+ ++ INGFGRIG
Sbjct: 1 MTIRVAINGFGRIG 14
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 162 bits (413), Expect = 2e-50
Identities = 52/94 (55%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L +AKV+HDNF I++G MTT H+ T Q+ +D + R R AA NI+P TGAA
Sbjct: 158 NCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAA 216
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV VIP L GKL G+A RVP NVSVVDL V+
Sbjct: 217 KAVALVIPELKGKLNGIALRVPTPNVSVVDLVVQ 250
Score = 33.6 bits (78), Expect = 0.014
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
++ INGFGRIG
Sbjct: 4 RVAINGFGRIG 14
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 158 bits (403), Expect = 7e-49
Identities = 49/94 (52%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
NS+ + KV+H+ F IV G++TTVH+ T Q+ +D P K R R AA NIIP TGAA
Sbjct: 154 NSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAA 212
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV V+P + GKL GMA RVP + S+ DLTV
Sbjct: 213 KAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVL 246
Score = 34.4 bits (80), Expect = 0.008
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 2 SKIGINGFGRIG 13
+++ INGFGRIG
Sbjct: 1 ARVAINGFGRIG 12
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 148 bits (376), Expect = 7e-45
Identities = 48/93 (51%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L +A+V++D I +G MTT+H+ T Q T+D K R AA ++IP +TGAA
Sbjct: 156 NCLAPVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAA 214
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 145
KAVG V+P L GKL G+A RVP NVSVVDLT
Sbjct: 215 KAVGLVLPELKGKLDGVAIRVPTPNVSVVDLTF 247
Score = 33.6 bits (78), Expect = 0.014
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
++ INGFGRIG
Sbjct: 4 RVAINGFGRIG 14
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 141 bits (358), Expect = 4e-42
Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L L K ++D + +GLMTTVHA T Q D L R R A ++IP TGAA
Sbjct: 157 NCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYHEDLRR-ARSATMSMIPTKTGAA 215
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 145
AVG V+P L+GKL G A RVP NVS+VDL+
Sbjct: 216 AAVGDVLPELDGKLNGYAIRVPTINVSIVDLSF 248
Score = 33.2 bits (77), Expect = 0.017
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
++ ING+GRIG
Sbjct: 3 RVAINGYGRIG 13
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 141 bits (358), Expect = 4e-42
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N ++ + K++ D + I G +TT+H+ Q+ +D L R R A+Q+IIP T A
Sbjct: 158 NCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRR-TRAASQSIIPVDTKLA 216
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 145
+ + P N + +A RVP NV+ +DL+V
Sbjct: 217 AGITRFFPQFNDRFEAIAVRVPTINVTAIDLSV 249
Score = 33.6 bits (78), Expect = 0.012
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1 MSKIGINGFGRIG 13
++ INGFGRIG
Sbjct: 2 TVRVAINGFGRIG 14
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 118 bits (298), Expect = 2e-33
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
L + I+ +I + + V GP N + +
Sbjct: 147 TGLCRILYAINSIADIKKARIVLVRRAADPNDDKTGPV-------NAITPNPVTVPSHHG 199
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
V V+P GK+ A VP + + L V
Sbjct: 200 PDVVSVVPEFEGKILTSAVIVPTTLMHMHTLMVE 233
Score = 34.7 bits (80), Expect = 0.005
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 1 MSKIGINGFGRIG 13
+K+ ING+G IG
Sbjct: 2 PAKVLINGYGSIG 14
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 113 bits (285), Expect = 2e-31
Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
L K +HD+F I + V + GP IIP
Sbjct: 143 TGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVSKGPI-----------NAIIPNPPKLP 191
Query: 113 KAVG-KVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
G V L+ + MA VP + ++ V
Sbjct: 192 SHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVE 226
Score = 37.0 bits (86), Expect = 0.001
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 1 MSKIGINGFGRIG 13
M + ING+G +G
Sbjct: 1 MKAVAINGYGTVG 13
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 93.7 bits (233), Expect = 5e-24
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
L+ I + + V +M A K R A + + +
Sbjct: 144 TGLVRTLSAIREYADYVYAVMIRRAADPNDTK----------RGPINAIKPTVEVPSHHG 193
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
V VIP + MAF VP + V + V
Sbjct: 194 PDVQTVIP---INIETMAFVVPTTLMHVHSVMVE 224
Score = 34.3 bits (79), Expect = 0.007
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 1 MSKIGINGFGRIG 13
K+G+NG+G IG
Sbjct: 2 KVKVGVNGYGTIG 14
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 72.1 bits (176), Expect = 5e-16
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 52 SNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
+ +LL ++ ++ + T V ++ GP + +P+
Sbjct: 141 TTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKGPI-----NSLVPDPATVPSHH-- 193
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AK V VI N + MA P + + + +
Sbjct: 194 AKDVNSVIR--NLDIATMAVIAPTTLMHMHFINIT 226
Score = 36.6 bits (84), Expect = 0.001
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 1 MSKIGINGFGRIG 13
M + +NG+G IG
Sbjct: 1 MVNVAVNGYGTIG 13
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-06
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 39/137 (28%)
Query: 18 NSQPCLRLVSMVSDVLDVLYSELLLPREPSF-----------VTVSNSLLTLAKVIHDNF 66
+QP L L+ + L S+ L+P + +F ++++ +++
Sbjct: 1731 FTQPALTLMEKA--AFEDLKSKGLIPADATFAGHSLGEYAALASLADV-MSIE----SLV 1783
Query: 67 EIVE--GLMTTVHATTATQKTVDGPSGKLWRDGRG-AAQNIIP---AATGAAKAVGKVIP 120
E+V G+ Q V P +L R G A N P AA+ + +A+ V+
Sbjct: 1784 EVVFYRGM--------TMQVAV--PRDELGRSNYGMIAIN--PGRVAASFSQEALQYVVE 1831
Query: 121 ALNGKLTGMAFRVPVAN 137
+ GK TG + V + N
Sbjct: 1832 RV-GKRTG--WLVEIVN 1845
Score = 26.2 bits (57), Expect = 4.9
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 14/80 (17%)
Query: 45 EPSFVTVSNSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGK--LWRDGR--G- 99
E V + +A + + F + T D P+ L G+ G
Sbjct: 17 EHVL-LVPTASFFIASQLQEQFN------KILPEPTEGFAADDEPTTPAELV--GKFLGY 67
Query: 100 AAQNIIPAATGAAKAVGKVI 119
+ + P+ G V +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLC 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.44
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 20/91 (21%)
Query: 18 NSQPCLRLVSMVS--DVL--DV-LYSELLLPREPSFVTVSNSLLTL--AKVIHDNFEIVE 70
QP + + D L D ++++ + R ++ + +LL L AK + +++
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-----LID 156
Query: 71 GLM-----TTVHATTATQKTVDG--PSGKLW 94
G + T V V W
Sbjct: 157 G-VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 27.6 bits (62), Expect = 1.5
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 1 MSKIGINGFGRIG---LNNLNSQPCLRLVSMVSDV 32
+IG+ G GRIG NL L + +SDV
Sbjct: 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYA-ISDV 35
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 27.6 bits (61), Expect = 1.6
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 3 KIGINGFGRIG---LNNLNSQPCLRLVSMVSDVLDVLYSELLLPREPSFVTVSNSLLTLA 59
+ I G+G IG L L P + +V + +P E V + + L
Sbjct: 11 RAAIVGYGNIGRYALQALREAPDFEIAGIVRR------NPAEVPFELQPFRVVSDIEQLE 64
Query: 60 KV 61
V
Sbjct: 65 SV 66
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 26.9 bits (60), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 1 MSK---IGINGFGRIG---LNNLNSQPCLRLVSMVSDV 32
MS I + G GRIG N+ + P L LV ++D
Sbjct: 1 MSLTLRIALFGAGRIGHVHAANIAANPDLELVV-IADP 37
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3
PDB: 1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 25.3 bits (55), Expect = 8.3
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 1 MSKIGINGFGRIG 13
++ I G+G +G
Sbjct: 3 NIRVAIVGYGNLG 15
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,145,035
Number of extensions: 119737
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 73
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)