RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6886
(146 letters)
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 149 bits (377), Expect = 1e-47
Identities = 84/94 (89%), Positives = 85/94 (90%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L LAKVIHDNF IVEGLMTTVHA TATQKTVDGPSGKLWRDGRGA QNIIPA+TGAA
Sbjct: 4 NCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAA 63
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAVGKVIP LNGKLTGMAFRVP ANVSVVDLT R
Sbjct: 64 KAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCR 97
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 144 bits (364), Expect = 1e-45
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L KV+ F I++G MTT H+ T Q+ +D + R R A NI+P +TGAA
Sbjct: 4 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAA 62
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV V+P L GKL G+A RVP NVSVVDL V+
Sbjct: 63 KAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQ 96
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 141 bits (357), Expect = 1e-44
Identities = 53/94 (56%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L AKV+H+ F IV G+MTTVH+ T Q+ +D P L R R AA++IIP TGAA
Sbjct: 4 NCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRA-RAAAESIIPTTTGAA 62
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KAV V+P L GKL GMA RVP NVSVVDL
Sbjct: 63 KAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAE 96
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 128 bits (322), Expect = 3e-39
Identities = 58/92 (63%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 53 NSLLTLAKV-IHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGA 111
N L + V + + F + GLMTT+H+ TATQKTVDG S K WR GR AA NIIP+ TGA
Sbjct: 5 NCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGA 64
Query: 112 AKAVGKVIPALNGKLTGMAFRVPVANVSVVDL 143
AKAVG VIP+ GKLTGM+FRVP +VSVVDL
Sbjct: 65 AKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDL 96
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 122 bits (306), Expect = 6e-37
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
NSL + KV+ + F + + LMTTVH+ T Q+ +D P L R R AA NIIP TGAA
Sbjct: 4 NSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRA-RAAAINIIPTTTGAA 62
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
KA V+P+L G+ GMA RVP A S+ D+T
Sbjct: 63 KATALVLPSLKGRFDGMALRVPTATGSISDITAL 96
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 119 bits (300), Expect = 5e-36
Identities = 46/94 (48%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
N L L K ++D + +GLMTTVHA T Q D L R R A ++IP TGAA
Sbjct: 5 NCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYHEDLRR-ARSATMSMIPTKTGAA 63
Query: 113 KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
AVG V+P L+GKL G A RVP NVS+VDL+
Sbjct: 64 AAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFV 97
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 88.4 bits (219), Expect = 1e-23
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
+LL ++ ++ + T V ++ + G + PA +
Sbjct: 4 TALLRTICTVNKVSKVEKVRATIVRRAADQKE---------VKKGPINSLVPDPATVPSH 54
Query: 113 --KAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 146
K V VI L + MA P + + + +
Sbjct: 55 HAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINIT 88
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 85.7 bits (212), Expect = 9e-23
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAA 112
L K +HD+F I + V + +G IIP
Sbjct: 5 TGLCRTLKPLHDSFGIKKVRAVIVRRGADPA-----------QVSKGPINAIIPNPPKLP 53
Query: 113 KAVGK-VIPALNGKLTGMAFRVPVANVSVVDLTVR 146
G V L+ + MA VP + ++ V
Sbjct: 54 SHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVE 88
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 37.4 bits (86), Expect = 2e-04
Identities = 2/18 (11%), Positives = 7/18 (38%)
Query: 64 DNFEIVEGLMTTVHATTA 81
+ + ++ T A +
Sbjct: 154 NEWGFSNRMLDTTVALMS 171
Score = 34.3 bits (78), Expect = 0.002
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
++ ING+GRIG
Sbjct: 3 RVAINGYGRIG 13
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 35.7 bits (82), Expect = 7e-04
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 2 SKIGINGFGRIG 13
SKIGINGFGRIG
Sbjct: 1 SKIGINGFGRIG 12
Score = 26.0 bits (57), Expect = 1.4
Identities = 1/16 (6%), Positives = 5/16 (31%)
Query: 53 NSLLTLAKVIHDNFEI 68
+ +I ++
Sbjct: 151 GYSQRVIDLIKHMQKV 166
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 35.6 bits (82), Expect = 7e-04
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 3 KIGINGFGRIGLNNL-----NSQPCLRLVSMVSDVLDVLYSELLLPRE 45
++ INGFGRIG P + +V+ ++D+ D LL +
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVA-INDLTDTKTLAHLLKYD 48
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 35.5 bits (81), Expect = 9e-04
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 2 KVGINGFGRIG 12
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 35.4 bits (81), Expect = 0.001
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 2 KLGINGFGRIG 12
Score = 29.3 bits (65), Expect = 0.13
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 52 SNSLLTLAKVIHDNFEI 68
SN +V+ I
Sbjct: 149 SNEWGYSNRVLDLAVHI 165
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 34.9 bits (80), Expect = 0.001
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
K+ INGFGRIG
Sbjct: 2 KVAINGFGRIG 12
Score = 27.2 bits (60), Expect = 0.52
Identities = 3/16 (18%), Positives = 10/16 (62%)
Query: 52 SNSLLTLAKVIHDNFE 67
S ++ LA ++ + ++
Sbjct: 157 SQRVVDLADIVANKWQ 172
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 34.6 bits (79), Expect = 0.002
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 1 MSKIGINGFGRIG 13
M + ING+G +G
Sbjct: 1 MKAVAINGYGTVG 13
Score = 28.8 bits (64), Expect = 0.18
Identities = 1/23 (4%), Positives = 10/23 (43%)
Query: 53 NSLLTLAKVIHDNFEIVEGLMTT 75
+++ + ++ D ++ +
Sbjct: 145 DAVRAILEMEEDKYKSINKTNKA 167
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 34.7 bits (79), Expect = 0.002
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+GINGFGRIG
Sbjct: 4 KVGINGFGRIG 14
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 34.6 bits (79), Expect = 0.002
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 3 KIGINGFGRIG---LNNLNSQPCLRLVSMVSDVLDVLYSELLLPRE 45
K+GINGFGRIG P + +V+ V+D+ D LL +
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPDIEVVA-VNDLTDANTLAHLLKYD 47
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 34.1 bits (78), Expect = 0.002
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 3 KIGINGFGRIG 13
K+G+NGFGRIG
Sbjct: 3 KVGVNGFGRIG 13
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 33.7 bits (77), Expect = 0.003
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 3 KIGINGFGRIG---LNNLNSQPCLRLV 26
K+GINGFGRIG + + +V
Sbjct: 3 KVGINGFGRIGRIVFRAAQKRSDIEIV 29
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 33.8 bits (77), Expect = 0.003
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 1 MSKIGINGFGRIG---LNNLNSQPCLRLV 26
M + +NG+G IG + + QP ++LV
Sbjct: 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLV 29
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 31.5 bits (71), Expect = 0.023
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 3 KIGINGFGRIG 13
K+G+NG+G IG
Sbjct: 4 KVGVNGYGTIG 14
Score = 24.9 bits (54), Expect = 3.7
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 26 VSMVSDVLDVLYSELLLPREPSFVTVS---NSLLTLAKVIHDNFEIVEGLMT 74
V+ VS V Y L V + +++ + ++ I + +
Sbjct: 116 VAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 26.3 bits (58), Expect = 1.1
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 13/87 (14%)
Query: 60 KVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVI 119
I + + V + + RG I P + V
Sbjct: 12 SAIREYADYVYA-------------VMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQ 58
Query: 120 PALNGKLTGMAFRVPVANVSVVDLTVR 146
+ + MAF VP + V + V
Sbjct: 59 TVIPINIETMAFVVPTTLMHVHSVMVE 85
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 26.0 bits (56), Expect = 1.4
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 3 KIGINGFGRIG---LNNLNSQPCLRLVSMVSDV 32
+ + G GR G L +L ++++ V
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFV 41
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 26.1 bits (56), Expect = 1.6
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 3 KIGINGFGRIG---LNNLNSQPCLRLVSMVS 30
+IG+ G I ++ P + + S
Sbjct: 3 RIGVMGCADIARKVSRAIHLAPNATISGVAS 33
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 25.3 bits (54), Expect = 2.4
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 3 KIGINGFGRIG----LNNLNSQPCLRLVSMVS 30
+IG+ G G I L L + L S
Sbjct: 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWS 34
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 25.8 bits (55), Expect = 2.4
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 3 KIGINGFGRIG----LNNLNSQPCLRLVSMVS 30
I G G+ L R+ ++VS
Sbjct: 35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVS 66
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase
VCA1048 {Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 24.8 bits (53), Expect = 4.2
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 3 KIGINGFGRIG----LNNLNSQPCLRLVSMVSD 31
KI + G G I L L P + LV +
Sbjct: 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRN 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,101
Number of extensions: 19822
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 37
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.3 bits)