BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6887
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 37/47 (78%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
N VVAINDPFI VDY Y+FKYDSTHGK+ GEV DG+ L++NG K
Sbjct: 38 NIDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVSHDGSNLIINGKK 84
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVV 27
Y+FKYDSTHGK+ GEV DG+ L++
Sbjct: 56 YMFKYDSTHGKYKGEVSHDGSNLII 80
>pdb|1SZJ|G Chain G, Structure Of
Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From
Palinurus Versicolor Refined 2.0 Angstrom Resolution
pdb|1SZJ|R Chain R, Structure Of
Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From
Palinurus Versicolor Refined 2.0 Angstrom Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI ++YMVY+FKYDSTHG F GEVKA+ LVV+G K
Sbjct: 26 VVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKK 69
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG F GEVKA+ LVV
Sbjct: 39 MVYMFKYDSTHGMFKGEVKAEDGALVV 65
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI ++YMVY+FKYDSTHG F GEVKA+ LVV+G K
Sbjct: 26 VVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKK 69
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG F GEVKA+ LVV
Sbjct: 39 MVYMFKYDSTHGMFKGEVKAEDGALVV 65
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 10 THGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGN 68
T FN G +VAINDPFI ++YMVY+F+YDSTHGKF+G VKA+ LV+NGN
Sbjct: 19 TRAAFN-----SGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGN 72
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+F+YDSTHGKF+G VKA+ LV+
Sbjct: 43 MVYMFQYDSTHGKFHGTVKAENGKLVI 69
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 10 THGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGN 68
T FN G +VAINDPFI ++YMVY+F+YDSTHGKF+G VKA+ LV+NGN
Sbjct: 22 TRAAFN-----SGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGN 75
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+F+YDSTHGKF+G VKA+ LV+
Sbjct: 46 MVYMFQYDSTHGKFHGTVKAENGKLVI 72
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI ++YMVY+FKYDSTHG F GEVK + LVV+G K
Sbjct: 26 VVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKVEDGALVVDGKK 69
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG F GEVK + LVV
Sbjct: 39 MVYMFKYDSTHGMFKGEVKVEDGALVV 65
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure
Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure
Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI ++YMVY+FKYDSTHG F GEVK + LVV+G K
Sbjct: 27 VVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKMEDGALVVDGKK 70
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG F GEVK + LVV
Sbjct: 40 MVYMFKYDSTHGVFKGEVKMEDGALVV 66
>pdb|4GPD|1 Chain 1, The Structure Of Lobster
Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0
Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster
Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0
Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster
Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0
Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster
Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0
Angstroms Resolution
Length = 333
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI ++YMVY+FKYDSTHG F GEVK + LVV+G K
Sbjct: 26 VVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKMEDGALVVDGKK 69
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG F GEVK + LVV
Sbjct: 39 MVYMFKYDSTHGVFKGEVKMEDGALVV 65
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 10 THGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
T FN G VVAINDPFI + YMVY+F+YDSTHGKF+G VKA+ LV+NG
Sbjct: 16 TRAAFN-----SGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVING 68
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+F+YDSTHGKF+G VKA+ LV+
Sbjct: 40 MVYMFQYDSTHGKFHGTVKAENGKLVI 66
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 10 THGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
T FN G +VAINDPFI + YMVY+F+YDSTHGKF+G VKA+ LV++G
Sbjct: 18 TRAAFN-----SGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAEDGKLVIDG 70
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+F+YDSTHGKF+G VKA+ LV+
Sbjct: 42 MVYMFQYDSTHGKFHGTVKAEDGKLVI 68
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
N VVA+NDPFI DY Y+FKYDSTHG++ GEV D ++V+G K
Sbjct: 33 NVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKK 79
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVV 27
Y+FKYDSTHG++ GEV D ++V
Sbjct: 51 YMFKYDSTHGRYAGEVSHDDKHIIV 75
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A
Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A
Resolution
Length = 332
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
N VVA+NDPFI DY Y+FKYDSTHG++ GEV D ++V+G K
Sbjct: 25 NVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKK 71
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVV 27
Y+FKYDSTHG++ GEV D ++V
Sbjct: 43 YMFKYDSTHGRYAGEVSHDDKHIIV 67
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
+ VVAINDPF+ V+YM YL KYDS HG FNG V+ G L +NG
Sbjct: 46 DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCING 90
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M YL KYDS HG FNG V+ G L +
Sbjct: 62 MAYLLKYDSVHGNFNGTVEVSGKDLCI 88
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
+ VVAINDPF+ V+YM YL KYDS HG FNG V+ G L +NG
Sbjct: 46 DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCING 90
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M YL KYDS HG FNG V+ G L +
Sbjct: 62 MAYLLKYDSVHGNFNGTVEVSGKDLCI 88
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
+ VVAINDPF+ V+YM YL KYDS HG FNG V+ G L +NG
Sbjct: 41 DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCING 85
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M YL KYDS HG FNG V+ G L +
Sbjct: 57 MAYLLKYDSVHGNFNGTVEVSGKDLCI 83
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds)
Complex With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds)
Complex With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
Length = 346
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI +YMVY+FKYDSTHG++ G V+ LVV+ ++
Sbjct: 33 VVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHE 76
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG++ G V+ LVV
Sbjct: 46 MVYMFKYDSTHGRYKGSVEFRNGQLVV 72
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 12 GKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVN 66
G+ V + VVA+NDPFI +YMVY+FKYDSTHG++ G V+ LVV+
Sbjct: 13 GRLVLRVCMEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEHKNGRLVVD 67
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG++ G V+ LVV
Sbjct: 40 MVYMFKYDSTHGRYKGTVEHKNGRLVV 66
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
G+ V+AINDPF+ +DYMVYL +YDS HG + GEV L+V G
Sbjct: 46 GDVEVLAINDPFMSLDYMVYLLRYDSVHGHYPGEVSHKDGKLIVGG 91
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
MVYL +YDS HG + GEV DG +V
Sbjct: 63 MVYLLRYDSVHGHYPGEVSHKDGKLIV 89
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 28 IVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 70
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 1 MVYLFKYDSTHGKFNGEVKA-DGNFL-------VVAINDPF------IGVDYMVY---LF 43
M Y+ KYDSTHG+F+G V+ DG+ + V A DP +GVD + LF
Sbjct: 40 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLF 99
Query: 44 KYDSTHGK 51
D T K
Sbjct: 100 LTDETARK 107
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 29 IVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 71
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 1 MVYLFKYDSTHGKFNGEVKA-DGNFL-------VVAINDPF------IGVDYMVY---LF 43
M Y+ KYDSTHG+F+G V+ DG+ + V A DP +GVD + LF
Sbjct: 41 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLF 100
Query: 44 KYDSTHGK 51
D T K
Sbjct: 101 LTDETARK 108
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 29 IVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 71
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 1 MVYLFKYDSTHGKFNGEVKA-DGNFL-------VVAINDPF------IGVDYMVY---LF 43
M Y+ KYDSTHG+F+G V+ DG+ + V A DP +GVD + LF
Sbjct: 41 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLF 100
Query: 44 KYDSTHGK 51
D T K
Sbjct: 101 LTDETARK 108
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor-Induced
Conformational Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor-Induced
Conformational Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor- Induced
Conformational Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor- Induced
Conformational Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor- Induced
Conformational Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor- Induced
Conformational Changes
Length = 330
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 28 IVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 70
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 1 MVYLFKYDSTHGKFNGEVKA-DGNFL-------VVAINDPF------IGVDYMVY---LF 43
M Y+ KYDSTHG+F+G V+ DG+ + V A DP +GVD + LF
Sbjct: 40 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLF 99
Query: 44 KYDSTHGK 51
D T K
Sbjct: 100 LTDETARK 107
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAINDPF+ ++++ YL KYDS HG+F EV FL++ K
Sbjct: 38 VVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKK 81
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ YL KYDS HG+F EV ADG L+
Sbjct: 51 LCYLLKYDSVHGQFPCEVTHADGFLLI 77
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum
Length = 337
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAINDPF+ ++++ YL KYDS HG+F EV FL++ K
Sbjct: 30 VVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKK 73
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ YL KYDS HG+F EV ADG L+
Sbjct: 43 LCYLLKYDSVHGQFPCEVTHADGFLLI 69
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor-Induced
Conformational Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence
For Substrate Binding And Cofactor-Induced
Conformational Changes
Length = 330
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + DY Y KYDSTHG+F+G V+ L+VNG K
Sbjct: 28 IVAIND-LLDADYXAYXLKYDSTHGRFDGTVEVKDGHLIVNGKK 70
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 17/67 (25%)
Query: 2 VYLFKYDSTHGKFNGEVKA-DGNFL-------VVAINDPF------IGVDYMVY---LFK 44
Y KYDSTHG+F+G V+ DG+ + V A DP +GVD + LF
Sbjct: 41 AYXLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFL 100
Query: 45 YDSTHGK 51
D T K
Sbjct: 101 TDETARK 107
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKF 52
+VA+NDPFI DYM Y+FKYD+ HG++
Sbjct: 30 LVAVNDPFITTDYMTYMFKYDTVHGQW 56
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 1 MVYLFKYDSTHGKF 14
M Y+FKYD+ HG++
Sbjct: 43 MTYMFKYDTVHGQW 56
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKF 52
+VA+NDPFI DYM Y+FKYD+ HG++
Sbjct: 29 LVAVNDPFITTDYMTYMFKYDTVHGQW 55
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 1 MVYLFKYDSTHGKF 14
M Y+FKYD+ HG++
Sbjct: 42 MTYMFKYDTVHGQW 55
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+ND G + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 28 VVAVNDTG-GANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP------FIGVDYMV 40
+ +L KYDS HG+ + EV +GN LVV A DP IGVD +V
Sbjct: 40 LAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVV 93
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+ND + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 28 VVAVND-LTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP------FIGVDYMV 40
+ +L KYDS HG+ + EV +GN LVV A DP IGVD +V
Sbjct: 40 LAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVV 93
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+ND + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 28 VVAVND-LTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP------FIGVDYMV 40
+ +L KYDS HG+ + EV +GN LVV A DP IGVD +V
Sbjct: 40 LAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVV 93
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Stearothermophilus At 1.8
Angstroms Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Stearothermophilus At 1.8
Angstroms Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Stearothermophilus At 1.8
Angstroms Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Stearothermophilus At 1.8
Angstroms Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus
Stearothermophilus Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus
Stearothermophilus Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus
Stearothermophilus Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus
Stearothermophilus Phosphorylating Gapdh
Length = 334
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+ND + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 28 VVAVND-LTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYDS HG+ + EV +GN LVV
Sbjct: 40 LAHLLKYDSVHGRLDAEVSVNGNNLVV 66
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND +L +YD+ HGKF GEV DG++LVVNG++
Sbjct: 40 IVAIND-LGDAKTNAHLTQYDTAHGKFPGEVSVDGDYLVVNGDR 82
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 2 VYLFKYDSTHGKFNGEVKADGNFLVV 27
+L +YD+ HGKF GEV DG++LVV
Sbjct: 53 AHLTQYDTAHGKFPGEVSVDGDYLVV 78
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro
188 Replaced By Ser Complexed With Nadp+
Length = 334
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+N + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 28 VVAVNG-LTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYDS HG+ + EV +GN LVV
Sbjct: 40 LAHLLKYDSVHGRLDAEVSVNGNNLVV 66
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND ++ +L KYDS HG F G V+A + +VV+G +
Sbjct: 29 IVAIND-LTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKE 71
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYDS HG F G V+A + +VV
Sbjct: 41 LAHLLKYDSVHGIFKGSVEAKDDSIVV 67
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND +L +YD+ HGKF G V +G+++VVNG+K
Sbjct: 31 IVAIND-LGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDK 73
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVV 27
+L +YD+ HGKF G V +G+++VV
Sbjct: 45 HLTRYDTAHGKFPGTVSVNGSYMVV 69
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAIND + +L KYDS H KF G+V+ N L+V+G +
Sbjct: 29 VVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYDS H KF G+V+ N L+V
Sbjct: 41 LAHLLKYDSVHKKFPGKVEYTENSLIV 67
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 24 FLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
F +VAIN + + + +L KYD+ HGKF+G V+A + L+V+G
Sbjct: 29 FEIVAINASYPS-ETLAHLIKYDTVHGKFDGTVEAFEDHLLVDG 71
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYD+ HGKF+G V+A + L+V
Sbjct: 43 LAHLIKYDTVHGKFDGTVEAFEDHLLV 69
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.2 Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.2 Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.2 Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.2 Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 29 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 67
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 41 LAHLLKYDTMQGRFTGEVEVVDGGFRV 67
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A
Hexagonal Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A
Hexagonal Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A
Hexagonal Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A
Hexagonal Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A
Hexagonal Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A
Hexagonal Space Group
Length = 344
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 37 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 75
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 49 LAHLLKYDTMQGRFTGEVEVVDGGFRV 75
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom
Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom
Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom
Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom
Resolution
Length = 338
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 31 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 69
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 43 LAHLLKYDTMQGRFTGEVEVVDGGFRV 69
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252
At 2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252
At 2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252
At 2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252
At 2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh
1)from Methicillin Resistant Staphylococcus Aureus
Mrsa252 Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh
1)from Methicillin Resistant Staphylococcus Aureus
Mrsa252 Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh
1)from Methicillin Resistant Staphylococcus Aureus
Mrsa252 Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh
1)from Methicillin Resistant Staphylococcus Aureus
Mrsa252 Complexed With Nad And G3p
Length = 336
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 29 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 67
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 41 LAHLLKYDTMQGRFTGEVEVVDGGFRV 67
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 29 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 67
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 41 LAHLLKYDTMQGRFTGEVEVVDGGFRV 67
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
At 2.0 Angstrom Resolution
Length = 336
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 29 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 67
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 41 LAHLLKYDTMQGRFTGEVEVVDGGFRV 67
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 29 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 67
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 41 LAHLLKYDTMQGRFTGEVEVVDGGFRV 67
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK-ADGNFLV 64
VVA+ND D + +L KYD+ G+F GEV+ DG F V
Sbjct: 32 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRV 70
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVK-ADGNFLV 26
+ +L KYD+ G+F GEV+ DG F V
Sbjct: 44 LAHLLKYDTMQGRFTGEVEVVDGGFRV 70
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK--------ADGNFLVVNGNK 69
VVA+ D +Y Y +YD+ HGKF EV A + LVVNG++
Sbjct: 33 VVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHR 84
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVVAINDPFI 34
Y +YD+ HGKF EV + VA +D +
Sbjct: 48 YQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV 79
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
Length = 359
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK--------ADGNFLVVNGNK 69
VVA+ D +Y Y +YD+ HGKF EV A + LVVNG++
Sbjct: 33 VVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHR 84
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVVAINDPFI 34
Y +YD+ HGKF EV + VA +D +
Sbjct: 48 YQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV 79
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 26 VVAINDPFIG-VDYMVYLFKYDSTHGKFNGEVKADGNFLVV 65
VVAIND +G V+ +L +YDS HG+F EV+ G+ + V
Sbjct: 31 VVAIND--LGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDV 69
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVVA 28
+L +YDS HG+F EV+ G+ + V
Sbjct: 45 HLLRYDSVHGRFPKEVEVAGDTIDVG 70
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp.
Complexed With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp.
Complexed With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp.
Complexed With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp.
Complexed With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp.
Complexed With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp.
Complexed With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
VVAIN+ +L +YDS G+FN ++ D N + VNG
Sbjct: 31 VVAINNT-SDARTAAHLLEYDSVLGRFNADISYDENSITVNG 71
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVV 27
+L +YDS G+FN ++ D N + V
Sbjct: 45 HLLEYDSVLGRFNADISYDENSITV 69
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK--------ADGNFLVVNGNK 69
VVA+ D Y Y KYDS HGKF V A + LVVNG++
Sbjct: 33 VVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHR 84
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVVAINDPFI 34
Y KYDS HGKF V + VA +D +
Sbjct: 48 YQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLV 79
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed
With Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed
With Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed
With Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed
With Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed
With Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed
With Nad
Length = 339
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
VVAIN+ +L +YDS G+FN ++ D N + VNG
Sbjct: 31 VVAINNT-SDARTAAHLLEYDSVLGRFNADISYDENSITVNG 71
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVV 27
+L +YDS G+FN ++ D N + V
Sbjct: 45 HLLEYDSVLGRFNADISYDENSITV 69
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed
With Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh)
With Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh)
With Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh)
With Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh)
With Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh)
With Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh)
With Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From
Arabidopsis Thaliana
Length = 337
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADG 60
+ D ++AIND GV +L KYDST G F+ +VK G
Sbjct: 24 RKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDADVKPSG 64
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 3 YLFKYDSTHGKFNGEVKADG 22
+L KYDST G F+ +VK G
Sbjct: 45 HLLKYDSTLGIFDADVKPSG 64
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 32.7 bits (73), Expect = 0.060, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVV 65
VVAIN+ M +L KYD++HG+F EV+ + + L V
Sbjct: 31 VVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQLFV 69
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVA 28
M +L KYD++HG+F EV+ + + L V
Sbjct: 43 MAHLLKYDTSHGRFAWEVRQERDQLFVG 70
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 32.7 bits (73), Expect = 0.060, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVV 65
VVAIN+ M +L KYD++HG+F EV+ + + L V
Sbjct: 32 VVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQLFV 70
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVA 28
M +L KYD++HG+F EV+ + + L V
Sbjct: 44 MAHLLKYDTSHGRFAWEVRQERDQLFVG 71
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 32.7 bits (73), Expect = 0.060, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVV 65
VVAIN+ M +L KYD++HG+F EV+ + + L V
Sbjct: 32 VVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQLFV 70
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVA 28
M +L KYD++HG+F EV+ + + L V
Sbjct: 44 MAHLLKYDTSHGRFAWEVRQERDQLFVG 71
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + +L KYDST G +N +V++ +VV+G +
Sbjct: 47 IVAIND-LTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGRE 89
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYDST G +N +V++ +VV
Sbjct: 59 LAHLLKYDSTFGVYNKKVESRDGAIVV 85
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 39 MVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
+ +L KYDS + +F GEV D +L V+G
Sbjct: 38 LAHLLKYDSIYHRFPGEVAYDDQYLYVDG 66
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP 32
+ +L KYDS + +F GEV D +L V A+ DP
Sbjct: 38 LAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDP 77
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of
220's Loop Motion In Catalysis
Length = 331
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 39 MVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
+ +L KYDS + +F GEV D +L V+G
Sbjct: 38 LAHLLKYDSIYHRFPGEVAYDDQYLYVDG 66
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP 32
+ +L KYDS + +F GEV D +L V A+ DP
Sbjct: 38 LAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDP 77
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 32.0 bits (71), Expect = 0.100, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 39 MVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
+ +L KYDST+G+F G V D L V+G
Sbjct: 38 LAHLLKYDSTYGRFPGAVGYDEENLYVDG 66
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP 32
+ +L KYDST+G+F G V D L V AI DP
Sbjct: 38 LAHLLKYDSTYGRFPGAVGYDEENLYVDGKAIRATAIKDP 77
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN 61
+ D VV IND GV +L KYDS G F+ +VK G+
Sbjct: 23 RKDSPLDVVVINDAG-GVKQASHLLKYDSILGTFDADVKTAGD 64
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN 61
VVA+ND V+ +L +YDS HG F G V+ G+
Sbjct: 52 VVALND-LGSVETNAHLLRYDSVHGCFPGTVQVVGD 86
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 3 YLFKYDSTHGKFNGEVKADGN 23
+L +YDS HG F G V+ G+
Sbjct: 66 HLLRYDSVHGCFPGTVQVVGD 86
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN 61
+ D VV IND GV +L KYDS G F+ +VK G+
Sbjct: 23 RKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGD 64
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN 61
+ D VV IND GV +L KYDS G F+ +VK G+
Sbjct: 23 RKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGD 64
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted
By The Crystal Structure Of A4 Isoform Complexed With
Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted
By The Crystal Structure Of A4 Isoform Complexed With
Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted
By The Crystal Structure Of A4 Isoform Complexed With
Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN 61
+ D VV IND GV +L KYDS G F+ +VK G+
Sbjct: 23 RKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGD 64
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 11 HGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN 61
HGK D VV IND GV +L KYDS G F+ +VK G+
Sbjct: 21 HGK-------DSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGD 63
>pdb|2J8A|A Chain A, X-Ray Structure Of The N-Terminus Rrm Domain Of Set1
Length = 136
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 28 AINDPFIGVDYMVYLFKYDSTHGKFNGEVKA 58
A NDP + VYL KY S+ GK N KA
Sbjct: 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKA 68
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal
Glyceraldehyde-3-Phosphate Dehydrogenase From
Leishmania Mexicana: Implications For Structure-Based
Drug Design And A New Position For The Inorganic
Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal
Glyceraldehyde-3-Phosphate Dehydrogenase From
Leishmania Mexicana: Implications For Structure-Based
Drug Design And A New Position For The Inorganic
Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal
Glyceraldehyde-3-Phosphate Dehydrogenase From
Leishmania Mexicana: Implications For Structure-Based
Drug Design And A New Position For The Inorganic
Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal
Glyceraldehyde-3-Phosphate Dehydrogenase From
Leishmania Mexicana: Implications For Structure-Based
Drug Design And A New Position For The Inorganic
Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA--------DGNFLVVNGNK 69
VVA+ D +Y Y K+D+ HG+ V+A + LVVNG++
Sbjct: 33 VVAVVDMSTNAEYFAYQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHR 84
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA--------DGNFLVVNGNK 69
VVA+ D +Y Y K+D+ HG+ V+A + LVVNG++
Sbjct: 33 VVAVVDMSTNAEYFAYQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHR 84
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK 57
+ D VV +ND GV +L KYDS G F +VK
Sbjct: 23 RKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKADVK 60
>pdb|1W2T|A Chain A, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|B Chain B, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|C Chain C, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|D Chain D, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|E Chain E, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|F Chain F, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
Length = 432
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 2 VYLFKYDSTHGKFNGE-VKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA 58
V L+ D THG F+G V+ DG ++VY + D TH K E +
Sbjct: 62 VALYPDDETHGVFSGSAVEKDGKM-------------FLVYTYYRDPTHNKGEKETQC 106
>pdb|1UYP|A Chain A, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|B Chain B, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|C Chain C, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|D Chain D, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|E Chain E, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|F Chain F, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
Length = 432
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 2 VYLFKYDSTHGKFNGE-VKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA 58
V L+ D THG F+G V+ DG ++VY + D TH K E +
Sbjct: 62 VALYPDDETHGVFSGSAVEKDGKM-------------FLVYTYYRDPTHNKGEKETQC 106
>pdb|2FFI|A Chain A, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23.
pdb|2FFI|B Chain B, Crystal Structure Of Putative 2-pyrone-4,6-dicarboxylic
Acid Hydrolase From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr23
Length = 288
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEV 56
Y YD+ G + G+++A G V + F+G D L + G+ G V
Sbjct: 34 YAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGVV 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.143 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,510,844
Number of Sequences: 62578
Number of extensions: 93096
Number of successful extensions: 287
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 141
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)