Query psy6887
Match_columns 70
No_of_seqs 132 out of 1081
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:00:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00023 glyceraldehyde-3-phos 99.5 2.6E-14 5.6E-19 99.5 4.2 48 22-69 25-72 (337)
2 PTZ00434 cytosolic glyceraldeh 99.5 6.2E-14 1.3E-18 98.3 5.8 48 22-69 30-85 (361)
3 PRK07403 glyceraldehyde-3-phos 99.4 1.8E-13 3.9E-18 95.3 2.6 47 22-69 26-72 (337)
4 PF00044 Gp_dh_N: Glyceraldehy 99.4 1.4E-13 3.1E-18 86.7 1.7 49 21-69 22-70 (151)
5 PRK15425 gapA glyceraldehyde-3 99.4 2E-13 4.4E-18 94.9 2.5 47 22-69 25-71 (331)
6 PRK07729 glyceraldehyde-3-phos 99.4 2.3E-13 5E-18 94.9 2.3 47 22-69 25-71 (343)
7 PTZ00353 glycosomal glyceralde 99.4 2.2E-13 4.8E-18 95.0 2.1 48 22-69 25-74 (342)
8 TIGR01534 GAPDH-I glyceraldehy 99.3 7.8E-13 1.7E-17 91.8 2.8 46 22-68 24-70 (327)
9 PLN02272 glyceraldehyde-3-phos 99.3 8E-13 1.7E-17 94.2 2.7 48 22-69 108-156 (421)
10 PLN02237 glyceraldehyde-3-phos 99.3 1.1E-12 2.3E-17 94.0 2.9 47 22-69 100-147 (442)
11 PRK08955 glyceraldehyde-3-phos 99.3 1.7E-12 3.7E-17 90.3 2.5 48 22-69 25-72 (334)
12 PRK13535 erythrose 4-phosphate 99.3 2.6E-12 5.6E-17 89.5 3.0 47 22-69 27-73 (336)
13 PLN02358 glyceraldehyde-3-phos 99.3 4.8E-12 1E-16 88.2 3.9 48 22-69 28-77 (338)
14 smart00846 Gp_dh_N Glyceraldeh 99.3 3.7E-12 8E-17 79.9 2.8 48 21-69 22-69 (149)
15 PTZ00434 cytosolic glyceraldeh 99.2 3.8E-12 8.2E-17 89.4 2.7 54 1-56 47-119 (361)
16 PF00044 Gp_dh_N: Glyceraldehy 99.1 3.8E-12 8.2E-17 80.2 -0.8 54 1-56 40-103 (151)
17 PTZ00023 glyceraldehyde-3-phos 99.1 2.5E-11 5.4E-16 84.6 2.9 53 1-55 42-104 (337)
18 smart00846 Gp_dh_N Glyceraldeh 99.1 2E-11 4.4E-16 76.6 2.1 54 1-56 39-102 (149)
19 PRK08289 glyceraldehyde-3-phos 99.1 2.4E-11 5.1E-16 87.7 1.2 54 1-56 174-241 (477)
20 TIGR01532 E4PD_g-proteo D-eryt 99.1 5.6E-11 1.2E-15 82.5 2.8 47 22-69 25-71 (325)
21 COG0057 GapA Glyceraldehyde-3- 99.1 4E-11 8.7E-16 83.4 1.4 46 23-69 26-71 (335)
22 PRK08289 glyceraldehyde-3-phos 99.1 7.8E-11 1.7E-15 85.1 2.9 47 22-69 154-206 (477)
23 PLN03096 glyceraldehyde-3-phos 99.1 9.6E-11 2.1E-15 83.2 2.7 47 22-69 85-132 (395)
24 PRK07729 glyceraldehyde-3-phos 99.0 8.5E-11 1.8E-15 82.2 2.4 53 1-55 41-103 (343)
25 PRK07403 glyceraldehyde-3-phos 99.0 6.4E-11 1.4E-15 82.6 1.7 53 1-55 42-104 (337)
26 PRK15425 gapA glyceraldehyde-3 99.0 8.5E-11 1.8E-15 81.8 2.2 53 1-55 41-103 (331)
27 PRK08955 glyceraldehyde-3-phos 99.0 2.5E-10 5.4E-15 79.6 2.4 53 1-55 42-102 (334)
28 KOG0657|consensus 99.0 2.4E-10 5.1E-15 77.9 2.2 47 23-69 10-56 (285)
29 PLN02358 glyceraldehyde-3-phos 99.0 3.9E-10 8.5E-15 78.7 3.0 54 1-56 45-110 (338)
30 PLN02237 glyceraldehyde-3-phos 98.9 4E-10 8.6E-15 80.9 2.5 52 1-54 116-178 (442)
31 PTZ00353 glycosomal glyceralde 98.9 6.4E-10 1.4E-14 77.8 2.7 51 1-53 42-104 (342)
32 PLN02272 glyceraldehyde-3-phos 98.9 7.3E-10 1.6E-14 79.2 2.9 53 1-55 125-188 (421)
33 PRK13535 erythrose 4-phosphate 98.9 1.1E-09 2.3E-14 76.5 2.7 52 1-54 43-104 (336)
34 COG0057 GapA Glyceraldehyde-3- 98.9 4.6E-10 9.9E-15 78.2 0.8 56 1-58 41-106 (335)
35 TIGR01534 GAPDH-I glyceraldehy 98.8 1.8E-09 4E-14 75.1 2.5 53 1-55 40-104 (327)
36 TIGR01532 E4PD_g-proteo D-eryt 98.8 4.3E-09 9.2E-14 73.1 2.5 52 1-54 41-102 (325)
37 PLN03096 glyceraldehyde-3-phos 98.7 5.5E-09 1.2E-13 74.3 2.2 53 1-55 101-164 (395)
38 KOG0657|consensus 98.6 9.2E-08 2E-12 65.4 4.2 55 1-57 26-90 (285)
39 TIGR01546 GAPDH-II_archae glyc 96.4 0.0011 2.5E-08 46.5 0.6 45 22-68 21-68 (333)
40 COG1003 GcvP Glycine cleavage 77.0 1.8 3.8E-05 32.2 1.8 62 6-67 162-241 (496)
41 PRK04207 glyceraldehyde-3-phos 66.3 2.1 4.5E-05 30.0 0.2 44 21-67 23-70 (341)
42 PF14444 S1-like: S1-like 63.2 13 0.00029 20.0 2.9 32 7-41 26-57 (58)
43 COG4506 Uncharacterized protei 48.8 32 0.0007 21.7 3.3 26 6-32 88-113 (143)
44 PF09272 Hepsin-SRCR: Hepsin, 43.5 26 0.00057 21.2 2.2 15 40-54 12-26 (110)
45 PF10974 DUF2804: Protein of u 42.4 1E+02 0.0022 21.5 5.4 53 15-67 266-322 (333)
46 KOG1880|consensus 39.6 26 0.00056 25.0 2.1 23 39-61 73-95 (337)
47 KOG1120|consensus 38.0 63 0.0014 20.2 3.4 34 35-68 61-94 (134)
48 PF00969 MHC_II_beta: Class II 36.1 24 0.00052 19.5 1.2 13 42-54 25-37 (75)
49 PRK10377 PTS system glucitol/s 35.6 62 0.0013 19.7 3.1 41 23-69 24-64 (120)
50 TIGR00849 gutA PTS system, glu 32.2 72 0.0016 19.4 3.0 42 23-70 24-65 (121)
51 PF06394 Pepsin-I3: Pepsin inh 30.9 28 0.00062 19.6 1.0 22 46-68 14-35 (76)
52 cd06476 ACD_HspB2_like Alpha c 29.6 96 0.0021 17.2 3.1 29 40-69 8-38 (83)
53 PF12519 DUF3722: Protein of u 28.6 1.5E+02 0.0034 20.4 4.4 34 23-58 111-147 (260)
54 PHA00010 G major spike protein 28.6 1.7E+02 0.0038 19.1 4.5 46 9-54 52-104 (179)
55 cd06478 ACD_HspB4-5-6 Alpha-cr 24.7 1.3E+02 0.0029 16.5 3.3 28 40-68 8-37 (83)
56 PF03829 PTSIIA_gutA: PTS syst 24.0 52 0.0011 19.9 1.3 41 23-69 24-64 (117)
57 PF01324 Diphtheria_R: Diphthe 23.2 1.1E+02 0.0023 18.9 2.6 14 23-37 37-50 (154)
58 PF04571 Lipin_N: lipin, N-ter 22.9 1.9E+02 0.004 17.5 4.8 16 18-33 22-37 (110)
59 cd06526 metazoan_ACD Alpha-cry 22.6 1.4E+02 0.0031 16.1 2.9 29 40-69 8-38 (83)
60 PF06097 DUF945: Bacterial pro 22.3 92 0.002 22.0 2.5 20 50-69 435-454 (460)
61 cd06480 ACD_HspB8_like Alpha-c 21.8 1.4E+02 0.0029 17.1 2.8 29 40-69 16-46 (91)
62 PF06475 Glycolipid_bind: Puta 21.6 84 0.0018 20.3 2.0 44 23-66 120-171 (179)
63 TIGR03118 PEPCTERM_chp_1 conse 20.4 74 0.0016 22.8 1.7 24 44-67 275-299 (336)
No 1
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.49 E-value=2.6e-14 Score=99.49 Aligned_cols=48 Identities=50% Similarity=0.897 Sum_probs=45.0
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++|||.+++++++|||||||+||+|++.++++++.|+|||++
T Consensus 25 ~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~ 72 (337)
T PTZ00023 25 EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKK 72 (337)
T ss_pred CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeE
Confidence 469999999976799999999999999999999999999999999985
No 2
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=99.48 E-value=6.2e-14 Score=98.30 Aligned_cols=48 Identities=35% Similarity=0.587 Sum_probs=44.5
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe--------eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA--------DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~--------~~~~l~v~~~~ 69 (70)
+++++++||||.+++++++|||||||+||+|+++++. +++.|+|||++
T Consensus 30 ~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ing~~ 85 (361)
T PTZ00434 30 TEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVNGHR 85 (361)
T ss_pred CCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEECCEE
Confidence 4699999999767999999999999999999999998 88999999986
No 3
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.38 E-value=1.8e-13 Score=95.30 Aligned_cols=47 Identities=40% Similarity=0.552 Sum_probs=44.2
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+++++++|||+. ++++++|||||||+||+|+++++.+++.|++||++
T Consensus 26 ~~~~vvaind~~-~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 26 SQLELVAINDTS-DPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred CCeEEEEecCCC-CHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 469999999985 99999999999999999999999999999999985
No 4
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.38 E-value=1.4e-13 Score=86.71 Aligned_cols=49 Identities=51% Similarity=0.881 Sum_probs=45.5
Q ss_pred cceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 21 ~~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.++++++++||+..++++++|||+|||+||+|+..++++++.|.|||++
T Consensus 22 ~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~ 70 (151)
T PF00044_consen 22 QPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKK 70 (151)
T ss_dssp STTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEE
T ss_pred cceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeeccc
Confidence 3479999999996699999999999999999999999999999999974
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.38 E-value=2e-13 Score=94.86 Aligned_cols=47 Identities=51% Similarity=0.952 Sum_probs=44.1
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||+ +++++++|||||||+||+|+++++++++.|++||++
T Consensus 25 ~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~ 71 (331)
T PRK15425 25 SDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 71 (331)
T ss_pred CCCEEEEEecC-CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeE
Confidence 46999999998 599999999999999999999999999999999975
No 6
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.37 E-value=2.3e-13 Score=94.94 Aligned_cols=47 Identities=43% Similarity=0.742 Sum_probs=44.2
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+++++++|||+. ++++++|||||||+||+|+++++++++.|+|||++
T Consensus 25 ~~~~vvaINd~~-~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~ 71 (343)
T PRK07729 25 SAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKK 71 (343)
T ss_pred CCcEEEEecCCC-CHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEE
Confidence 469999999984 99999999999999999999999999999999985
No 7
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.36 E-value=2.2e-13 Score=95.02 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=43.5
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCcccc-ceEEeeCCeEEECC-EE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFN-GEVKADGNFLVVNG-NK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~-~~~~~~~~~l~v~~-~~ 69 (70)
++++++++|||.+++++++|||+|||+||+|+ .+++++++.|+||| ++
T Consensus 25 ~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~ 74 (342)
T PTZ00353 25 PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQK 74 (342)
T ss_pred CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeE
Confidence 46999999997569999999999999999996 68999999999998 54
No 8
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=99.32 E-value=7.8e-13 Score=91.80 Aligned_cols=46 Identities=57% Similarity=0.905 Sum_probs=43.3
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCC-eEEECCE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN-FLVVNGN 68 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~-~l~v~~~ 68 (70)
+.++++++||+ +++++++|||+|||+||+|+++++++++ .|.+||+
T Consensus 24 ~~~~ivaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~ 70 (327)
T TIGR01534 24 LDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGK 70 (327)
T ss_pred CceEEEEEecC-CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCe
Confidence 46999999999 5999999999999999999999999999 7999998
No 9
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.32 E-value=8e-13 Score=94.25 Aligned_cols=48 Identities=52% Similarity=0.998 Sum_probs=44.2
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~-~~~~l~v~~~~ 69 (70)
.++++++||||..++++++|||||||+||+|++.+++ +++.|.+||++
T Consensus 108 ~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~ 156 (421)
T PLN02272 108 DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQ 156 (421)
T ss_pred CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEE
Confidence 3699999999877999999999999999999999997 88999999975
No 10
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=99.31 E-value=1.1e-12 Score=93.99 Aligned_cols=47 Identities=38% Similarity=0.566 Sum_probs=43.3
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~-~~~~l~v~~~~ 69 (70)
+++++++|||+ .++++++|||||||+||+|++.++. +++.|++||++
T Consensus 100 ~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~ 147 (442)
T PLN02237 100 SPLDVVVVNDS-GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKP 147 (442)
T ss_pred CCeEEEEECCC-CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEE
Confidence 46999999998 4999999999999999999999986 88999999975
No 11
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.28 E-value=1.7e-12 Score=90.29 Aligned_cols=48 Identities=35% Similarity=0.650 Sum_probs=44.8
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++|||.+++++++|||||||+||+|+++++.+++.|.+||++
T Consensus 25 ~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~ 72 (334)
T PRK08955 25 PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKR 72 (334)
T ss_pred CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEE
Confidence 469999999976799999999999999999999999999999999975
No 12
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=99.27 E-value=2.6e-12 Score=89.50 Aligned_cols=47 Identities=34% Similarity=0.566 Sum_probs=44.3
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||+. ++++++|||||||+||+|+++++.+++.|++||++
T Consensus 27 ~~l~vvaind~~-~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~ 73 (336)
T PRK13535 27 AEITVVAINELA-DAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDA 73 (336)
T ss_pred CceEEEEecCCC-CHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEE
Confidence 469999999985 99999999999999999999999999999999985
No 13
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.26 E-value=4.8e-12 Score=88.18 Aligned_cols=48 Identities=44% Similarity=0.843 Sum_probs=42.8
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccc-eEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNG-EVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~-~~~~-~~~~l~v~~~~ 69 (70)
++++++++|||..++++++|||||||+||+|++ +++. +++.|.+||++
T Consensus 28 ~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~ 77 (338)
T PLN02358 28 DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 77 (338)
T ss_pred CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEE
Confidence 469999999977799999999999999999996 8998 55679999975
No 14
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.25 E-value=3.7e-12 Score=79.92 Aligned_cols=48 Identities=48% Similarity=0.716 Sum_probs=44.4
Q ss_pred cceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 21 ~~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.+.+++++++|+ .++++++|||+|||+||+|+.+++.+++.|+|||++
T Consensus 22 ~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~ 69 (149)
T smart00846 22 RPDIEVVAINDL-TDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKK 69 (149)
T ss_pred CCCCEEEEeecC-CCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEE
Confidence 357999999998 599999999999999999999999999999999975
No 15
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=99.24 E-value=3.8e-12 Score=89.37 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=45.2
Q ss_pred CeeeecccCCcccCCCcEEe--------cc--------eEEEE-EEcCCcccccceeeeE--EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA--------DG--------NFLVV-AINDPFIGVDYMVYLF--KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~--------~~--------~i~vv-ainDp~~~~~~~~~ll--~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++|+. ++ +|.++ +..||. +++|-.+.. ..||| |+|....
T Consensus 47 ~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ing~~I~~~~~~~dP~-~ipW~~~gvD~ViE~T-G~f~t~~ 119 (361)
T PTZ00434 47 FAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPA-DLPWGKLGVDYVIEST-GLFTDKL 119 (361)
T ss_pred eeeeeeeecCCCCcCCceeecccccccccCCEEEECCEEEEEEEecCChh-hCchhhcCCCEEEeCc-eeeccHH
Confidence 69999999999999999986 32 57876 889996 999998875 56999 9996543
No 16
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.15 E-value=3.8e-12 Score=80.22 Aligned_cols=54 Identities=35% Similarity=0.599 Sum_probs=46.0
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeE--EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++++.++ .|+++...||. +++|-.+.+ ..||| |+|....
T Consensus 40 ~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~-~i~W~~~gvDiVvEcT-G~f~~~~ 103 (151)
T PF00044_consen 40 LAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPE-EIPWGELGVDIVVECT-GKFRTRE 103 (151)
T ss_dssp HHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGG-GSTHHHHTESEEEETS-SSTHSHH
T ss_pred hhhhhhccccccceecccccccceeEeecccccchhhhhhc-ccccccccccEEEecc-ccceecc
Confidence 5899999999999999998764 58888999996 999988775 67999 9996543
No 17
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.14 E-value=2.5e-11 Score=84.64 Aligned_cols=53 Identities=34% Similarity=0.480 Sum_probs=45.2
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .|++++..||. +++|.... +..+|+ |.|...
T Consensus 42 ~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~-~lpW~~~gvDiVle~t-G~~~s~ 104 (337)
T PTZ00023 42 MCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPA-AIPWGKNGVDVVCEST-GVFLTK 104 (337)
T ss_pred hhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChh-hCCccccCCCEEEEec-chhcCH
Confidence 6899999999999999998754 69999999996 99998765 477999 888543
No 18
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.14 E-value=2e-11 Score=76.58 Aligned_cols=54 Identities=37% Similarity=0.586 Sum_probs=45.0
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeE--EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++++.++ .++++...+|. +++|-.+.. ..||| |.|....
T Consensus 39 ~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~-~~~w~~~gvDiVie~t-G~f~~~~ 102 (149)
T smart00846 39 LAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA-NLPWKELGVDIVVECT-GKFTTRE 102 (149)
T ss_pred HHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH-HCcccccCCeEEEecc-ccccchH
Confidence 5899999999999999887654 58889999995 999988864 66998 9986543
No 19
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.10 E-value=2.4e-11 Score=87.71 Aligned_cols=54 Identities=39% Similarity=0.601 Sum_probs=46.5
Q ss_pred CeeeecccCCcccCCCcEEec--c--------eEEEEEEcCCcccccceeeeE----EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKAD--G--------NFLVVAINDPFIGVDYMVYLF----KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~--~--------~i~vvainDp~~~~~~~~~ll----~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++|+.+ + .|+++..+||. +++|-.+.+ ..||| |.|..+.
T Consensus 174 ~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~-~i~W~~~Gvd~aiVID~T-G~f~~~~ 241 (477)
T PRK08289 174 RASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPE-EVDYTAYGINNALVVDNT-GKWRDEE 241 (477)
T ss_pred HHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChH-HCCchhcCCCeEEEEeCc-cccCCHH
Confidence 589999999999999999886 2 69999999996 999998874 56999 9997553
No 20
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=99.09 E-value=5.6e-11 Score=82.46 Aligned_cols=47 Identities=45% Similarity=0.689 Sum_probs=43.7
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||.. ++++++|||+|||+||+|+++++.+++.|++||++
T Consensus 25 ~~~~vvaInd~~-~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 71 (325)
T TIGR01532 25 LGIEVVALNELA-DQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDC 71 (325)
T ss_pred CCeEEEEEecCC-CHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeE
Confidence 359999999984 99999999999999999999999999999999975
No 21
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=4e-11 Score=83.44 Aligned_cols=46 Identities=52% Similarity=0.836 Sum_probs=43.4
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+++++++||+ .+++++|||++|||+||+|++.++.+++.+.+||+.
T Consensus 26 dieVVaInd~-t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~ 71 (335)
T COG0057 26 DIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKG 71 (335)
T ss_pred CeEEEEEecC-CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCce
Confidence 6999999998 599999999999999999999999999999999964
No 22
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.07 E-value=7.8e-11 Score=85.05 Aligned_cols=47 Identities=32% Similarity=0.499 Sum_probs=41.9
Q ss_pred ceEEEEEEc----CCcccccceeeeEEEecCCccccceEEee--CCeEEECCEE
Q psy6887 22 GNFLVVAIN----DPFIGVDYMVYLFKYDSTHGKFNGEVKAD--GNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvain----Dp~~~~~~~~~ll~yDSthG~~~~~~~~~--~~~l~v~~~~ 69 (70)
+.+++++|| |. .+++.++|||+|||+||+|++.++++ ++.|+|||++
T Consensus 154 ~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~ 206 (477)
T PRK08289 154 NGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNY 206 (477)
T ss_pred CCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEE
Confidence 369999994 66 59999999999999999999999987 7899999975
No 23
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.05 E-value=9.6e-11 Score=83.17 Aligned_cols=47 Identities=43% Similarity=0.587 Sum_probs=42.5
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~-~~~~l~v~~~~ 69 (70)
+.+++++|||+. ++++++|||+|||+||+|+++++. +++.|+|||++
T Consensus 85 ~~~evvaINd~~-~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~ 132 (395)
T PLN03096 85 SPLDVVAINDTG-GVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKV 132 (395)
T ss_pred CCeEEEEEcCCC-CHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEE
Confidence 358999999985 999999999999999999999976 67889999975
No 24
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.05 E-value=8.5e-11 Score=82.18 Aligned_cols=53 Identities=34% Similarity=0.561 Sum_probs=43.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .|++.+..||. +++|-... +..+|+ |.|...
T Consensus 41 ~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~-~~~W~~~gvDiVle~t-G~f~s~ 103 (343)
T PRK07729 41 LAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK-ELPWTDLGIDIVIEAT-GKFNSK 103 (343)
T ss_pred HHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh-hCcccccCCCEEEEcc-chhhhH
Confidence 6899999999999999998754 68888889995 99995544 577999 988543
No 25
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.05 E-value=6.4e-11 Score=82.62 Aligned_cols=53 Identities=30% Similarity=0.479 Sum_probs=44.4
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ +|++....||. .++|..+. +.++|+ |.|...
T Consensus 42 ~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~-~~~W~~~gvDiV~e~t-G~f~s~ 104 (337)
T PRK07403 42 NAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRNPL-NLPWKEWGIDLIIEST-GVFVTK 104 (337)
T ss_pred HHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCCcc-cCChhhcCCCEEEecc-chhhhH
Confidence 6899999999999999998754 68888888996 99998655 477999 988543
No 26
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.05 E-value=8.5e-11 Score=81.85 Aligned_cols=53 Identities=36% Similarity=0.602 Sum_probs=43.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .|++.+..||. ..+|..+. +..+|| |.|...
T Consensus 41 ~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~-~~~w~~~gvDiVle~t-G~f~s~ 103 (331)
T PRK15425 41 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA-NLKWDEVGVDVVAEAT-GLFLTD 103 (331)
T ss_pred HHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh-hCcccccCCCEEEEec-chhhcH
Confidence 6899999999999999998754 57888888996 99998554 577999 998643
No 27
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=98.98 E-value=2.5e-10 Score=79.57 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=44.4
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeEEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+..+ .+++.+..+|. +.+|.---+..+|+ |.|...
T Consensus 42 ~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~-~~~w~gvDiVle~t-G~~~s~ 102 (334)
T PRK08955 42 LAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA-DTDWSGCDVVIEAS-GVMKTK 102 (334)
T ss_pred HHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh-hCCccCCCEEEEcc-chhhcH
Confidence 5899999999999999998754 57778888996 99998667788999 988543
No 28
>KOG0657|consensus
Probab=98.98 E-value=2.4e-10 Score=77.95 Aligned_cols=47 Identities=60% Similarity=1.028 Sum_probs=44.1
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.++++++|||..+.++++|+++|||+||+|++.+++++.+++++|+.
T Consensus 10 ~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~~~~~~i~~G~~ 56 (285)
T KOG0657|consen 10 SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAENFKLIINGNP 56 (285)
T ss_pred CcccccccCcccccccccccccccccCCccccceeecCCceeecCce
Confidence 38999999999999999999999999999999999999999998864
No 29
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=98.96 E-value=3.9e-10 Score=78.68 Aligned_cols=54 Identities=37% Similarity=0.617 Sum_probs=43.4
Q ss_pred CeeeecccCCcccCCC-cEEe-cc--------eEEEEEEcCCccccccee--eeEEEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNG-EVKA-DG--------NFLVVAINDPFIGVDYMV--YLFKYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~-~v~~-~~--------~i~vvainDp~~~~~~~~--~ll~yDSthG~~~~~~ 56 (70)
|||||||||+||+|++ +++. .+ ++++....||. ..+|.. --+..+|| |.|....
T Consensus 45 ~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~~p~-~~~w~~~gvDiVie~t-G~~~s~~ 110 (338)
T PLN02358 45 MTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIRNPE-DIPWGEAGADFVVEST-GVFTDKD 110 (338)
T ss_pred HHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcCCcc-cCcccccCCCEEEEcc-cchhhHH
Confidence 6899999999999996 8877 22 68889999996 999954 44678999 9886543
No 30
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=98.94 E-value=4e-10 Score=80.93 Aligned_cols=52 Identities=33% Similarity=0.479 Sum_probs=42.4
Q ss_pred CeeeecccCCcccCCCcEEe-cc--------eEEEEEEcCCcccccceeee--EEEecCCccccc
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA-DG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNG 54 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~-~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~ 54 (70)
|||||||||+||+|+++|+. ++ .|++....||. +.+|..+. +..+|+ |.|..
T Consensus 116 ~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~-~l~W~~~gVDiViE~T-G~f~s 178 (442)
T PLN02237 116 ASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPL-KLPWAELGIDIVIEGT-GVFVD 178 (442)
T ss_pred HHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCch-hCChhhcCCCEEEEcc-Chhhh
Confidence 68999999999999999976 32 68888888995 99995444 577999 99854
No 31
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.92 E-value=6.4e-10 Score=77.80 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=42.4
Q ss_pred CeeeecccCCcccCC-CcEEecc---------eEEEEEEcCCcccccceeee--EEEecCCcccc
Q psy6887 1 MVYLFKYDSTHGKFN-GEVKADG---------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFN 53 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~-~~v~~~~---------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~ 53 (70)
|||||||||+||+|+ ++|+.++ .|++++..||. +.+|..+. +..+|| |.|.
T Consensus 42 ~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~dp~-~~~w~~~gvDiVie~T-G~f~ 104 (342)
T PTZ00353 42 IAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKHDLV-EIAWRDYGVQYVVECT-GLYS 104 (342)
T ss_pred HHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecCCcc-cCcccccCCCEEEEcc-cccc
Confidence 589999999999996 5887632 58899999996 99998654 577999 9994
No 32
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=98.91 E-value=7.3e-10 Score=79.23 Aligned_cols=53 Identities=36% Similarity=0.688 Sum_probs=43.3
Q ss_pred CeeeecccCCcccCCCcEEe-cc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA-DG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~-~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+. ++ .|++.+..||. +.+|..+. +..+|+ |.|...
T Consensus 125 ~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~dp~-~~~w~~~gVDiVlesT-G~f~s~ 188 (421)
T PLN02272 125 MAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPA-EIPWGDFGAEYVVESS-GVFTTV 188 (421)
T ss_pred HHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCCcc-cCcccccCCCEEEEcC-chhccH
Confidence 68999999999999999986 33 58888888996 99998544 577999 888653
No 33
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=1.1e-09 Score=76.48 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=42.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceee--eEEEecCCccccc
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVY--LFKYDSTHGKFNG 54 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~--ll~yDSthG~~~~ 54 (70)
|||||||||+||+|+++|+..+ .|++.+..||. +.+|... -+..+|+ |.|..
T Consensus 43 ~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~-~~~w~~~gvDiVle~t-G~~~s 104 (336)
T PRK13535 43 MAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERDIA-SLPWRELGVDVVLDCT-GVYGS 104 (336)
T ss_pred HHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCcc-cCcccccCCCEEEEcc-chhhh
Confidence 6899999999999999998754 68888888996 9999544 4677999 88744
No 34
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=4.6e-10 Score=78.22 Aligned_cols=56 Identities=39% Similarity=0.644 Sum_probs=47.5
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceEEe
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVKA 58 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~~ 58 (70)
+||||||||+||+|+++++.++ .|++.+..||. .++|..+. +..||| |.|.+....
T Consensus 41 ~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~-~l~w~d~gvdiVve~T-g~f~~~e~~ 106 (335)
T COG0057 41 LAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPA-NLPWADLGVDIVVECT-GKFTGREKA 106 (335)
T ss_pred HHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCChH-HCCccccCccEEEECC-CCccchhhH
Confidence 5899999999999999986643 69999999995 99999976 477999 999865543
No 35
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=98.83 E-value=1.8e-09 Score=75.07 Aligned_cols=53 Identities=40% Similarity=0.704 Sum_probs=41.3
Q ss_pred CeeeecccCCcccCCCcEEecc----------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG----------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~----------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .+.+.+..||. ..+|..+. +..+|+ |.|...
T Consensus 40 ~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~dp~-~~~w~~~gvDiVle~t-G~~~s~ 104 (327)
T TIGR01534 40 LAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERDPS-DLPWKALGVDIVIECT-GKFRDK 104 (327)
T ss_pred HHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCCcc-cCchhhcCCCEEEEcc-chhhcH
Confidence 6899999999999999887632 35566667996 99998544 577999 988643
No 36
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=98.76 E-value=4.3e-09 Score=73.12 Aligned_cols=52 Identities=35% Similarity=0.615 Sum_probs=42.8
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCccccccee--eeEEEecCCccccc
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMV--YLFKYDSTHGKFNG 54 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~--~ll~yDSthG~~~~ 54 (70)
|||||||||+||+|+++|+..+ .+++.+..||. +.+|.. --+..+|+ |.|..
T Consensus 41 ~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~-~~~w~~~gvDiVie~t-G~~~s 102 (325)
T TIGR01532 41 MAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTPE-ALPWRALGVDLVLDCT-GVYGN 102 (325)
T ss_pred HHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCChh-hccccccCCCEEEEcc-chhcc
Confidence 5899999999999999998754 68888888996 999954 44678999 88744
No 37
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=98.73 E-value=5.5e-09 Score=74.29 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=42.9
Q ss_pred CeeeecccCCcccCCCcEEe-cc--------eEEEEEEcCCcccccceee--eEEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA-DG--------NFLVVAINDPFIGVDYMVY--LFKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~-~~--------~i~vvainDp~~~~~~~~~--ll~yDSthG~~~~~ 55 (70)
|||||+|||+||+|+++|+. .+ .|++....||. +.+|..+ -+..||| |.|...
T Consensus 101 ~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~-~~~w~~~gvDiVie~T-G~f~s~ 164 (395)
T PLN03096 101 ASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPL-NLPWGELGIDLVIEGT-GVFVDR 164 (395)
T ss_pred HHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcc-cccccccCCCEEEECc-chhhhH
Confidence 58999999999999998875 22 68888888996 9999544 4678999 998543
No 38
>KOG0657|consensus
Probab=98.55 E-value=9.2e-08 Score=65.42 Aligned_cols=55 Identities=38% Similarity=0.606 Sum_probs=46.1
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeE--EEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~~ 57 (70)
|+|+|||||+||+|+++++..+ .+.++...||. .++|..... ..+|+ |.|.....
T Consensus 26 ~~y~~kydsthG~f~g~~k~~~~~~i~~G~~i~~~~~~~p~-~i~w~~~g~~~v~e~t-g~f~t~e~ 90 (285)
T KOG0657|consen 26 LAYMLKYDSTHGKFHGTVKAENFKLIINGNPITIFQFRDPA-KIPWGAKGADIVVEST-GVFTTMEK 90 (285)
T ss_pred ccccccccccCCccccceeecCCceeecCceEEeecccCcc-cCccccccceeEeecc-cccccccc
Confidence 6899999999999999999876 57888889995 999999876 55998 98865443
No 39
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.39 E-value=0.0011 Score=46.47 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=35.5
Q ss_pred ceEEEEEEcCCccccc---ceeeeEEEecCCccccceEEeeCCeEEECCE
Q psy6887 22 GNFLVVAINDPFIGVD---YMVYLFKYDSTHGKFNGEVKADGNFLVVNGN 68 (70)
Q Consensus 22 ~~i~vvainDp~~~~~---~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~ 68 (70)
++++++++||+ +++ +++++++|||+|+.+...++.+++.+.++|+
T Consensus 21 ~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~ 68 (333)
T TIGR01546 21 DDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGT 68 (333)
T ss_pred CCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCC
Confidence 57899999994 677 7778889999995444467788888888774
No 40
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=77.04 E-value=1.8 Score=32.18 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=39.3
Q ss_pred cccCCcccCCCcEEecc-eEEEEEEcCCc----------ccccceeeeEEEecCCccccceEEe-------eCCeEEECC
Q psy6887 6 KYDSTHGKFNGEVKADG-NFLVVAINDPF----------IGVDYMVYLFKYDSTHGKFNGEVKA-------DGNFLVVNG 67 (70)
Q Consensus 6 ~~Ds~~g~~~~~v~~~~-~i~vvainDp~----------~~~~~~~~ll~yDSthG~~~~~~~~-------~~~~l~v~~ 67 (70)
-=||.||+=|.+....+ ++.+|..++-- ++-+..+.|+.|=||||.|...|.- .++.+-.||
T Consensus 162 IP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DG 241 (496)
T COG1003 162 IPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDG 241 (496)
T ss_pred eeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecC
Confidence 34899999887776654 33334443321 2334556889999999999875531 345555555
No 41
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=66.29 E-value=2.1 Score=29.98 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=29.5
Q ss_pred cceEEEEEEcCCcccccceeeeEE---EecCCccccceEE-eeCCeEEECC
Q psy6887 21 DGNFLVVAINDPFIGVDYMVYLFK---YDSTHGKFNGEVK-ADGNFLVVNG 67 (70)
Q Consensus 21 ~~~i~vvainDp~~~~~~~~~ll~---yDSthG~~~~~~~-~~~~~l~v~~ 67 (70)
.+.+++++++|+ ++++.+|+++ || .||.++...+ .++..+.+.+
T Consensus 23 ~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~ 70 (341)
T PRK04207 23 QPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAG 70 (341)
T ss_pred CCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcC
Confidence 357999999995 5688888776 45 5677665554 4444555544
No 42
>PF14444 S1-like: S1-like
Probab=63.17 E-value=13 Score=20.00 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=21.1
Q ss_pred ccCCcccCCCcEEecceEEEEEEcCCcccccceee
Q psy6887 7 YDSTHGKFNGEVKADGNFLVVAINDPFIGVDYMVY 41 (70)
Q Consensus 7 ~Ds~~g~~~~~v~~~~~i~vvainDp~~~~~~~~~ 41 (70)
-|.+-|+.| +..+++.+.|+-+|.+...|.|.
T Consensus 26 ~~vv~G~~P---~vGdrV~v~A~~n~~~~~kW~A~ 57 (58)
T PF14444_consen 26 TDVVKGNVP---KVGDRVLVEAIYNPNMPFKWNAT 57 (58)
T ss_pred cccEecCCC---ccCCEEEEEEEeCCCCCccceee
Confidence 344445555 34457888888888777788773
No 43
>COG4506 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.78 E-value=32 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=18.6
Q ss_pred cccCCcccCCCcEEecceEEEEEEcCC
Q psy6887 6 KYDSTHGKFNGEVKADGNFLVVAINDP 32 (70)
Q Consensus 6 ~~Ds~~g~~~~~v~~~~~i~vvainDp 32 (70)
+||+++|+|+=.++.. .|.+..-+++
T Consensus 88 ~Y~t~~G~leLe~~T~-si~~~~~~e~ 113 (143)
T COG4506 88 RYDTPAGSLELEATTK-SIIVDVSQEG 113 (143)
T ss_pred EEecCCceEEEEEEEE-EEEEEecCCC
Confidence 6999999998555554 3666666666
No 44
>PF09272 Hepsin-SRCR: Hepsin, SRCR; InterPro: IPR015352 This entry represents the extracellular domain of the serine protease hepsin. The domain is formed primarily by three elements of regular secondary structure: a 12-residue alpha helix, a twisted five-stranded antiparallel beta sheet, and a second, two-stranded, antiparallel sheet. The two beta-sheets lie at roughly right angles to each other, with the helix nestled between the two, adopting an SRCR fold. The exact function of this domain has not been identified, though it probably may serve to orient the protease domain or place it in the vicinity of its substrate []. ; GO: 0004252 serine-type endopeptidase activity, 0070008 serine-type exopeptidase activity; PDB: 3T2N_B 1Z8G_A 1P57_A 1O5E_L 1O5F_L.
Probab=43.49 E-value=26 Score=21.16 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.0
Q ss_pred eeeEEEecCCccccc
Q psy6887 40 VYLFKYDSTHGKFNG 54 (70)
Q Consensus 40 ~~ll~yDSthG~~~~ 54 (70)
.-|..||++.|+|+-
T Consensus 12 ~rL~vfD~te~~WRl 26 (110)
T PF09272_consen 12 QRLMVFDSTEGTWRL 26 (110)
T ss_dssp -BEEEEETTTTEEEE
T ss_pred ceEEEEeccCCEEEE
Confidence 567899999999964
No 45
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=42.39 E-value=1e+02 Score=21.50 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=31.5
Q ss_pred CCcEEecc---eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeC-CeEEECC
Q psy6887 15 NGEVKADG---NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADG-NFLVVNG 67 (70)
Q Consensus 15 ~~~v~~~~---~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~-~~l~v~~ 67 (70)
|+.|...+ ++....+.+-....+-..---.+.-..|+|.+.+..++ ..|.+++
T Consensus 266 pW~i~s~dg~vdL~FtP~~~r~~~~nl~~i~s~~~Q~fG~f~G~~~~~dG~~i~l~~ 322 (333)
T PF10974_consen 266 PWRITSDDGRVDLTFTPIFDRKEKTNLGVIASNFHQVFGRFSGTLRLDDGEKIELDD 322 (333)
T ss_pred CeEEEcCCCeEEEEEEEeeeeecccceEEEEeeeEEEEEEEEEEEEcCCCCEEEECC
Confidence 33455533 35555555432232222222378889999999999854 5677866
No 46
>KOG1880|consensus
Probab=39.64 E-value=26 Score=24.98 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=17.4
Q ss_pred eeeeEEEecCCccccceEEeeCC
Q psy6887 39 MVYLFKYDSTHGKFNGEVKADGN 61 (70)
Q Consensus 39 ~~~ll~yDSthG~~~~~~~~~~~ 61 (70)
..+++-.||+||.|-+.+..+..
T Consensus 73 ~~~lidl~s~hgtf~g~~rL~~~ 95 (337)
T KOG1880|consen 73 RIFLIDLGSTHGTFLGNERLEPH 95 (337)
T ss_pred eEEEEEccCCcceeeeeeeeccC
Confidence 35677889999999887766443
No 47
>KOG1120|consensus
Probab=38.02 E-value=63 Score=20.20 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=23.1
Q ss_pred cccceeeeEEEecCCccccceEEeeCCeEEECCE
Q psy6887 35 GVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGN 68 (70)
Q Consensus 35 ~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~ 68 (70)
.=+-+.|-+.|-.+-|+|+..++.++=.|+|+-|
T Consensus 61 GCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~K 94 (134)
T KOG1120|consen 61 GCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPK 94 (134)
T ss_pred CcCcceeeeeeeccCCCCcceeeecCcEEEEccc
Confidence 3345678888877778887767766666666543
No 48
>PF00969 MHC_II_beta: Class II histocompatibility antigen, beta domain; InterPro: IPR000353 Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups on the basis of structure and function: class I molecules present intracellular antigen peptide fragments (~10 amino acids) on the surface of the host cells to cytotoxic T cells; class II molecules present exogenously derived antigenic peptides (~15 amino acids) to helper T cells. MHC class I and II molecules are assembled and loaded with their peptide ligands via different mechanisms. However, both present peptide fragments rather than entire proteins to T cells, and are required to mount an immune response. Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) []. MHC class II molecules are comprised of two membrane-spanning chains, alpha and beta, of similar size. Both chains consist of two globular domains (N- and C-terminal), and a transmembrane segment to anchor them to the membrane []. A groove in the structure acts as the peptide-binding site. This entry represents the N-terminal domain (also called beta-1 domain) of the beta chain. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane, 0042613 MHC class II protein complex; PDB: 2WBJ_B 1BX2_E 1YMM_B 2Q6W_E 3C5J_B 2P24_B 2PXY_D 1K2D_B 1U3H_H 2Z31_D ....
Probab=36.12 E-value=24 Score=19.52 Aligned_cols=13 Identities=46% Similarity=0.922 Sum_probs=10.6
Q ss_pred eEEEecCCccccc
Q psy6887 42 LFKYDSTHGKFNG 54 (70)
Q Consensus 42 ll~yDSthG~~~~ 54 (70)
++.|||+-|+|.+
T Consensus 25 ~v~fdS~vG~~vg 37 (75)
T PF00969_consen 25 FVRFDSDVGKFVG 37 (75)
T ss_dssp EEEEETTTTSEEE
T ss_pred eeeeeccceEeec
Confidence 4689999999864
No 49
>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional
Probab=35.56 E-value=62 Score=19.65 Aligned_cols=41 Identities=7% Similarity=0.233 Sum_probs=22.2
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.+-++..+.|. +.....++.+.+ ...+.+ ..++.|.|+++.
T Consensus 24 mlIlF~e~Ap~-~L~d~cvih~~~----~~~~~i-~~Gd~l~i~~~~ 64 (120)
T PRK10377 24 MLITFREGAPA-DIEEYCFIHCHG----ELKGAL-QPGLQFELGQHR 64 (120)
T ss_pred EEEEeCCCCCh-HHheeEEEEEcC----cccCcc-CCCCEEEECCEE
Confidence 34444445442 444444444443 334444 367889999875
No 50
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=32.18 E-value=72 Score=19.41 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=22.2
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEEC
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNKT 70 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~~ 70 (70)
.+-++..+.|. +.....++.+.+.. .+.+ ..++.|.|+++.+
T Consensus 24 mlIlFge~Ap~-~L~d~cvih~~~~~----~~~i-~~Gd~l~i~~~~Y 65 (121)
T TIGR00849 24 MIITFGEGAPD-DLAEYCFIHNIKEV----KGTL-KPGQVFMIGGIAY 65 (121)
T ss_pred EEEEeCCCCCh-HHheeEEEEEcCcc----cCCc-CCCCEEEECCEEE
Confidence 34444444442 44444444444433 3333 4688899998753
No 51
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=30.94 E-value=28 Score=19.63 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=15.1
Q ss_pred ecCCccccceEEeeCCeEEECCE
Q psy6887 46 DSTHGKFNGEVKADGNFLVVNGN 68 (70)
Q Consensus 46 DSthG~~~~~~~~~~~~l~v~~~ 68 (70)
|++.|-| ..+.+.+|+|.|||+
T Consensus 14 ~t~~~~~-~GC~V~~nklyvng~ 35 (76)
T PF06394_consen 14 DTTQYGF-DGCVVQNNKLYVNGK 35 (76)
T ss_dssp T-EEEEE-TTEEEETTEEEETTC
T ss_pred cceeEee-eeeEEECCEEEECCE
Confidence 3444444 367889999999985
No 52
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=29.63 E-value=96 Score=17.24 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=19.4
Q ss_pred eeeEEEecCCccccceE--EeeCCeEEECCEE
Q psy6887 40 VYLFKYDSTHGKFNGEV--KADGNFLVVNGNK 69 (70)
Q Consensus 40 ~~ll~yDSthG~~~~~~--~~~~~~l~v~~~~ 69 (70)
+|.+.-|-. |.-+..+ +++++.|+|.|++
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARH 38 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEE
Confidence 566667766 6656544 4578888887753
No 53
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=28.61 E-value=1.5e+02 Score=20.41 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred eEEEEEEcCCc---ccccceeeeEEEecCCccccceEEe
Q psy6887 23 NFLVVAINDPF---IGVDYMVYLFKYDSTHGKFNGEVKA 58 (70)
Q Consensus 23 ~i~vvainDp~---~~~~~~~~ll~yDSthG~~~~~~~~ 58 (70)
++.+.+++++. .....+...+|+|+ |||-.+..+
T Consensus 111 Ql~~~~vS~~~~~~~~~~~ll~~lQ~dt--gk~~~E~ly 147 (260)
T PF12519_consen 111 QLLLKAVSSPHSGLPNGGTLLGYLQHDT--GKYSQEYLY 147 (260)
T ss_pred heeeeeeecccccCCCCCeEEEEEEecC--CCCceEEEE
Confidence 57777887773 25566667789998 999876654
No 54
>PHA00010 G major spike protein
Probab=28.56 E-value=1.7e+02 Score=19.10 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=28.1
Q ss_pred CCcccCCCcEEecc----eEEEEEE--cCC-cccccceeeeEEEecCCccccc
Q psy6887 9 STHGKFNGEVKADG----NFLVVAI--NDP-FIGVDYMVYLFKYDSTHGKFNG 54 (70)
Q Consensus 9 s~~g~~~~~v~~~~----~i~vvai--nDp-~~~~~~~~~ll~yDSthG~~~~ 54 (70)
|.+|-|.--++.+. .-+++.+ +-. ..++++++.+++|||+-|.-+.
T Consensus 52 s~~~Gf~~~~~~D~s~p~~nqV~Sv~a~lSf~vds~~iac~VRFEsa~~~~pt 104 (179)
T PHA00010 52 STHGGFAHVIRVDTSNPTDNQVFSVAASLSFDVDSKYIACLVRFESADGQVPT 104 (179)
T ss_pred ecCCcEEEEEEecCCCCCCceEEEEEeEeeccCCCCeEEEEEEEEeccCCCCc
Confidence 45555655555543 2233333 211 2589999999999999887543
No 55
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=24.67 E-value=1.3e+02 Score=16.47 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=17.8
Q ss_pred eeeEEEecCCccccceE--EeeCCeEEECCE
Q psy6887 40 VYLFKYDSTHGKFNGEV--KADGNFLVVNGN 68 (70)
Q Consensus 40 ~~ll~yDSthG~~~~~~--~~~~~~l~v~~~ 68 (70)
+|.+..|-. |.-+..+ +++++.|+|.|+
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGK 37 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEE
Confidence 556666665 6655544 457777877764
No 56
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=23.99 E-value=52 Score=19.86 Aligned_cols=41 Identities=17% Similarity=0.482 Sum_probs=19.5
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.+-++..+.|. +....+++.+.+. ..+.++ .++.|.|++++
T Consensus 24 mlIlF~~~Ap~-~L~d~~vih~~~~----~~~~i~-~Gd~l~i~~~~ 64 (117)
T PF03829_consen 24 MLILFGENAPD-ELADYCVIHTFNE----LKGDIK-PGDTLIIGGQE 64 (117)
T ss_dssp EEEEE-TTS-H-HHHTTCEEEE-TG----GG-----TT-EEEETTEE
T ss_pred eEEEECCCCCh-hHheEEEEEecCc----ccCCcC-CCCEEEECCeE
Confidence 45555555553 5555555555553 333333 67889998875
No 57
>PF01324 Diphtheria_R: Diphtheria toxin, R domain; InterPro: IPR022404 This entry represents the C-terminal receptor-binding domain, also known as the R domain. This domain has a beta-sandwich fold consisiting of nine strands in two sheet with greek-key topology; it is a subclass of immunoglobin-like fold []. The R domain binds to cell surface receptor, permitting the toxin to enter the cell by receptor mediated endocytosis [, ]. Diphtheria toxin (2.4.2.36 from EC) is a 58 kDa protein secreted by lysogenic strains of Corynebacterium diphtheriae. The toxin causes the disease diphtheria in humans by gaining entry into the cell cytoplasm and inhibiting protein synthesis []. The mechanism of inhibition involves transfer of the ADP-ribose group of NAD to elongation factor-2 (EF-2), rendering EF-2 inactive. The catalysed reaction is as follows: NAD+ + peptide diphthamide = nicotinamide + peptide N-(ADP-D-ribosyl)diphthamide The crystal structure of the diphtheria toxin homodimer has been determined to 2.5A resolution []. The structure reveals a Y-shaped molecule of 3 domains, a catalytic domain (fragment A), whose fold is of the alpha + beta type; a transmembrane (TM) domain, which consists of 9 alpha-helices, 2 pairs of which may participate in pH-triggered membrane insertion and translocation; and a receptor-binding domain, which forms a flattened beta-barrel with a jelly-roll-like topology []. The TM- and receptor binding-domains together constitute fragment B.; PDB: 1MDT_B 1SGK_A 1F0L_B 1DDT_A 1TOX_B 4AE0_A 1XDT_T 4AE1_A.
Probab=23.21 E-value=1.1e+02 Score=18.89 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=9.7
Q ss_pred eEEEEEEcCCccccc
Q psy6887 23 NFLVVAINDPFIGVD 37 (70)
Q Consensus 23 ~i~vvainDp~~~~~ 37 (70)
+|++.+.|.|. .+.
T Consensus 37 dikitaentpl-pia 50 (154)
T PF01324_consen 37 DIKITAENTPL-PIA 50 (154)
T ss_dssp EEEEEESSS-E-EE-
T ss_pred ceEEeecCCCc-cee
Confidence 69999999884 543
No 58
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=22.89 E-value=1.9e+02 Score=17.50 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=11.3
Q ss_pred EEecceEEEEEEcCCc
Q psy6887 18 VKADGNFLVVAINDPF 33 (70)
Q Consensus 18 v~~~~~i~vvainDp~ 33 (70)
.+..+.|.|+.+..|-
T Consensus 22 atlSGAiDVIVV~q~D 37 (110)
T PF04571_consen 22 ATLSGAIDVIVVEQPD 37 (110)
T ss_pred ccccCceeEEEEecCC
Confidence 4455678888887774
No 59
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=22.56 E-value=1.4e+02 Score=16.08 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=18.8
Q ss_pred eeeEEEecCCccccceE--EeeCCeEEECCEE
Q psy6887 40 VYLFKYDSTHGKFNGEV--KADGNFLVVNGNK 69 (70)
Q Consensus 40 ~~ll~yDSthG~~~~~~--~~~~~~l~v~~~~ 69 (70)
.|.+..|-. |.-+..+ +++++.|.|.|++
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~ 38 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKH 38 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEE
Confidence 566777766 6555543 4677888887753
No 60
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.26 E-value=92 Score=21.97 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.1
Q ss_pred ccccceEEeeCCeEEECCEE
Q psy6887 50 GKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 50 G~~~~~~~~~~~~l~v~~~~ 69 (70)
+.+...++.+++.+.+||++
T Consensus 435 ~~~~~~~~~~~g~l~lNG~~ 454 (460)
T PF06097_consen 435 DNYVLELQLKNGQLTLNGQP 454 (460)
T ss_pred CEEEEEEEEECCEEEECCeE
Confidence 55666778899999999986
No 61
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=21.78 E-value=1.4e+02 Score=17.14 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=20.3
Q ss_pred eeeEEEecCCccccceE--EeeCCeEEECCEE
Q psy6887 40 VYLFKYDSTHGKFNGEV--KADGNFLVVNGNK 69 (70)
Q Consensus 40 ~~ll~yDSthG~~~~~~--~~~~~~l~v~~~~ 69 (70)
.|-+..|-. |.-+.++ ++.++.|+|.|++
T Consensus 16 ~f~v~ldv~-gF~pEDL~Vkv~~~~L~V~Gkh 46 (91)
T cd06480 16 PWKVCVNVH-SFKPEELTVKTKDGFVEVSGKH 46 (91)
T ss_pred cEEEEEEeC-CCCHHHcEEEEECCEEEEEEEE
Confidence 567777865 6555544 5688899998864
No 62
>PF06475 Glycolipid_bind: Putative glycolipid-binding; InterPro: IPR009467 This family consists of several hypothetical bacterial proteins. The function of this family is unknown.; PDB: 2H1T_A.
Probab=21.60 E-value=84 Score=20.28 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=25.8
Q ss_pred eEEEEEEcCCccc--ccceee------eEEEecCCccccceEEeeCCeEEEC
Q psy6887 23 NFLVVAINDPFIG--VDYMVY------LFKYDSTHGKFNGEVKADGNFLVVN 66 (70)
Q Consensus 23 ~i~vvainDp~~~--~~~~~~------ll~yDSthG~~~~~~~~~~~~l~v~ 66 (70)
+|.++.++=|... +....| ..+|.|.-..|...++++++.|+++
T Consensus 120 ~i~vayv~~p~l~v~~~~Q~Yt~l~~~~y~y~s~~~~f~a~l~VD~~G~V~d 171 (179)
T PF06475_consen 120 EIPVAYVDLPDLTVTPAPQRYTRLAPGRYRYESPDFGFTADLTVDDDGFVVD 171 (179)
T ss_dssp EEEEEEEETTTT--EEEEEEEEEEETTEEEEEE-SSS-EEEEEE-TTS-EEE
T ss_pred EEEEEEEECCCceEEEeeEEEEECCCCEEEEECCCCCceEEEEECCCceEEe
Confidence 5777777666322 122222 3488887677889999999998874
No 63
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=20.41 E-value=74 Score=22.84 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=18.3
Q ss_pred EEecCCccccceEEe-eCCeEEECC
Q psy6887 44 KYDSTHGKFNGEVKA-DGNFLVVNG 67 (70)
Q Consensus 44 ~yDSthG~~~~~~~~-~~~~l~v~~ 67 (70)
.||.++|+|-+.++- .+.-|+|+|
T Consensus 275 aFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 275 AYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred EecCCCCceeeeecCCCCCeEEecC
Confidence 789888999888875 444477776
Done!