RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6887
(70 letters)
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3;
NAD(P)-binding rossmann-fold domain, alpha and beta
protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 90.3 bits (225), Expect = 7e-24
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 20 ADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ N VVA+NDPFI DY Y+FKYDSTHG++ GEV D ++V+G K
Sbjct: 22 SRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKK 71
Score = 57.9 bits (141), Expect = 4e-12
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
Y+FKYDSTHG++ GEV D ++V DP VD + D
Sbjct: 41 AAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAI-----D 95
Query: 47 STHGKFNGEVKA 58
ST G F A
Sbjct: 96 ST-GVFKELDTA 106
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 90.0 bits (224), Expect = 8e-24
Identities = 31/50 (62%), Positives = 39/50 (78%)
Query: 20 ADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
G +VAINDPFI ++YMVY+F+YDSTHGKF+G VKA+ LV+NGN
Sbjct: 24 NSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNP 73
Score = 58.0 bits (141), Expect = 5e-12
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
MVY+F+YDSTHGKF+G VKA+ LV+ DP G +Y+V +
Sbjct: 43 MVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVV-----E 97
Query: 47 STHGKFNGEVKA 58
ST G F KA
Sbjct: 98 ST-GVFTTMEKA 108
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 90.0 bits (224), Expect = 9e-24
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 20 ADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ VVAINDPF+ ++++ YL KYDS HG+F EV FL++ K
Sbjct: 32 GRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKK 81
Score = 58.4 bits (142), Expect = 3e-12
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ YL KYDS HG+F EV FL++ A DP VD + +
Sbjct: 51 LCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVC-----E 105
Query: 47 STHGKFNGEVKA 58
ST G F + A
Sbjct: 106 ST-GVFLTKELA 116
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 89.9 bits (224), Expect = 9e-24
Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 20 ADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ VVAINDPF+ V+YM YL KYDS HG FNG V+ G L +NG
Sbjct: 38 ERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKV 87
Score = 58.3 bits (142), Expect = 3e-12
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
M YL KYDS HG FNG V+ G L + DP G + +
Sbjct: 57 MAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVC-----E 111
Query: 47 STHGKFNGEVKA 58
ST G F E KA
Sbjct: 112 ST-GVFTTEEKA 122
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-;
oxidoreductase, structural genomics, structural
genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A
{Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 89.9 bits (224), Expect = 1e-23
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI +YMVY+FKYDSTHG++ G V+ LVV+ ++
Sbjct: 33 VVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHE 76
Score = 58.3 bits (142), Expect = 3e-12
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
MVY+FKYDSTHG++ G V+ LVV +P +G Y+V +
Sbjct: 46 MVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVV-----E 100
Query: 47 STHGKFNGEVKA 58
ST G + A
Sbjct: 101 ST-GVYLSIQAA 111
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A
1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 82.9 bits (206), Expect = 3e-21
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 20 ADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ +VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 22 KRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 70
Score = 58.3 bits (142), Expect = 3e-12
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
M Y+ KYDSTHG+F+G V+ L+V A DP +GVD + +
Sbjct: 40 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVA-----E 94
Query: 47 STHGKFNGEVKA 58
+T G F + A
Sbjct: 95 AT-GLFLTDETA 105
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 81.8 bits (203), Expect = 8e-21
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 20 ADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNG-EVKA-DGNFLVVNGNK 69
+ +VA+NDPFI DYM Y+FKYD+ HG++ ++K D L++
Sbjct: 24 QSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKP 75
Score = 50.3 bits (121), Expect = 2e-09
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 22/74 (29%)
Query: 1 MVYLFKYDSTHGKFNG-EVKA-DGNFLVV--------AINDPF------IGVDYMVYLFK 44
M Y+FKYD+ HG++ ++K D L++ I +P G +Y+V
Sbjct: 43 MTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVV---- 98
Query: 45 YDSTHGKFNGEVKA 58
+ST G F + KA
Sbjct: 99 -EST-GVFTDKEKA 110
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 81.1 bits (201), Expect = 2e-20
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK--------ADGNFLVVNGNK 69
VVA+ D +Y Y +YD+ HGKF EV A + LVVNG++
Sbjct: 33 VVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHR 84
Score = 49.9 bits (120), Expect = 3e-09
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 29/81 (35%)
Query: 1 MVYLFKYDSTHGKFNGEVK--------ADGNFLVV---------AINDPF------IGVD 37
Y +YD+ HGKF EV A + LVV A +P +GV+
Sbjct: 46 FAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVE 105
Query: 38 YMVYLFKYDSTHGKFNGEVKA 58
Y++ +ST G F + A
Sbjct: 106 YVI-----EST-GLFTAKAAA 120
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 72.5 bits (179), Expect = 2e-17
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+ND + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 28 VVAVND-LTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Score = 54.8 bits (133), Expect = 6e-11
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ +L KYDS HG+ + EV +GN LVV A DP IGVD +V +
Sbjct: 40 LAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVV-----E 94
Query: 47 STHGKFNGEVKA 58
ST G+F A
Sbjct: 95 ST-GRFTKREDA 105
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q
3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q*
3ksd_Q* 3ksz_O*
Length = 338
Score = 72.6 bits (179), Expect = 2e-17
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+ND D + +L KYD+ G+F GEV+ VNG +
Sbjct: 31 VVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKE 73
Score = 54.1 bits (131), Expect = 1e-10
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ +L KYD+ G+F GEV+ V + D + +D ++ +
Sbjct: 43 LAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVL-----E 97
Query: 47 STHGKFNGEVKA 58
T G + + KA
Sbjct: 98 CT-GFYTDKDKA 108
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 72.2 bits (178), Expect = 4e-17
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + +L KYDST G +N +V++ +VV+G +
Sbjct: 47 IVAIND-LTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGRE 89
Score = 54.1 bits (131), Expect = 9e-11
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ +L KYDST G +N +V++ +VV A DP +G+D ++ +
Sbjct: 59 LAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVI-----E 113
Query: 47 STHGKFNGEVKA 58
ST G F+
Sbjct: 114 ST-GVFSSATSD 124
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 70.6 bits (174), Expect = 1e-16
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND ++ +L KYDS HG F G V+A + +VV+G +
Sbjct: 29 IVAIND-LTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKE 71
Score = 53.3 bits (129), Expect = 2e-10
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ +L KYDS HG F G V+A + +VV A DP +GVD ++ +
Sbjct: 41 LAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVI-----E 95
Query: 47 STHGKFNGEVKA 58
+T G F A
Sbjct: 96 AT-GVFRDRENA 106
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH,
glycolysis, oxidoreductase, NAD, rossmann fold; HET:
NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3
d.81.1.1 PDB: 1cer_O* 1vc2_A*
Length = 331
Score = 69.8 bits (172), Expect = 2e-16
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
V IND + +L KYDS + +F GEV D +L V+G
Sbjct: 26 VALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKA 68
Score = 52.9 bits (128), Expect = 3e-10
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ +L KYDS + +F GEV D +L V A+ DP GV ++ +
Sbjct: 38 LAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVI-----E 92
Query: 47 STHGKFNGEVKA 58
ST G F KA
Sbjct: 93 ST-GVFTDADKA 103
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid,
structural genomics, national institute of allergy AN
infectious diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 69.5 bits (171), Expect = 3e-16
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ F +VAIN + + + +L KYD+ HGKF+G V+A + L+V+G
Sbjct: 26 ESAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKM 73
Score = 52.5 bits (127), Expect = 4e-10
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ +L KYD+ HGKF+G V+A + L+V DP +GV+ ++ +
Sbjct: 43 LAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVI-----E 97
Query: 47 STHGKFNGEVKA 58
+T GKFN + KA
Sbjct: 98 AT-GKFNSKEKA 108
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 69.5 bits (171), Expect = 4e-16
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAIN+ +L +YDS G+FN ++ D N + VNG
Sbjct: 31 VVAINNTS-DARTAAHLLEYDSVLGRFNADISYDENSITVNGKT 73
Score = 52.6 bits (127), Expect = 3e-10
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+L +YDS G+FN ++ D N + V +P +D ++ +
Sbjct: 43 AAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVI-----E 97
Query: 47 STHGKFNGEVKA 58
ST G F A
Sbjct: 98 ST-GVFVTAEGA 108
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta
fold, oxidoreductase-protein binding complex; HET: NAD;
2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 68.3 bits (168), Expect = 8e-16
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAIN+ +L +YDS G+FN ++ D N + VNG
Sbjct: 31 VVAINNTS-DARTAAHLLEYDSVLGRFNADISYDENSITVNGKT 73
Score = 52.1 bits (126), Expect = 6e-10
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+L +YDS G+FN ++ D N + V +P +D ++ +
Sbjct: 43 AAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVI-----E 97
Query: 47 STHGKFNGEVKA 58
ST G F A
Sbjct: 98 ST-GVFVTAEGA 108
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 66.4 bits (163), Expect = 4e-15
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAIND + +L KYDS H KF G+V+ N L+V+G +
Sbjct: 29 VVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71
Score = 50.9 bits (123), Expect = 1e-09
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ +L KYDS H KF G+V+ N L+V A DP +GVD+++ +
Sbjct: 41 LAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVI-----E 95
Query: 47 STHGKFNGEVKA 58
ST G F KA
Sbjct: 96 ST-GVFRNREKA 106
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 64.4 bits (158), Expect = 2e-14
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADG-NFLVVNGNK 69
+ D VV IND GV +L KYDS G F+ +VK G + + V+G
Sbjct: 23 RKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKV 73
Score = 47.5 bits (114), Expect = 2e-08
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 21/73 (28%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGN---------FLVVAINDPF------IGVDYMVYLFKY 45
+L KYDS G F+ +VK G+ VV+ +P +G+D ++
Sbjct: 42 ASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVI----- 96
Query: 46 DSTHGKFNGEVKA 58
+ T G F A
Sbjct: 97 EGT-GVFVDRDGA 108
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1
PDB: 3gnq_A*
Length = 335
Score = 64.0 bits (157), Expect = 3e-14
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 17 EVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
E + +VAIND +L +YD+ HGKF G V +G+++VVNG+K
Sbjct: 22 EGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDK 73
Score = 49.0 bits (118), Expect = 5e-09
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+L +YD+ HGKF G V +G+++VV A +P + VD ++ +
Sbjct: 43 NAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVL-----E 97
Query: 47 STHGKFNGEVKA 58
T G F + KA
Sbjct: 98 CT-GFFTTKEKA 108
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 64.0 bits (157), Expect = 3e-14
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 17 EVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
E VVAIN+ M +L KYD++HG+F EV+ + + L V +
Sbjct: 23 ESGRRAEITVVAINELA-DAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDA 74
Score = 49.4 bits (119), Expect = 4e-09
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
M +L KYD++HG+F EV+ + + L V +GVD ++ D
Sbjct: 44 MAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVL-----D 98
Query: 47 STHGKFNGEVKA 58
T G +
Sbjct: 99 CT-GVYGSREHG 109
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 63.7 bits (156), Expect = 4e-14
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAIND V+ +L +YDS HG+F EV+ G+ + V
Sbjct: 31 VVAINDLG-PVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGP 73
Score = 50.2 bits (121), Expect = 2e-09
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 20/70 (28%)
Query: 3 YLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYDST 48
+L +YDS HG+F EV+ G+ + V A+ +P VD + + T
Sbjct: 45 HLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIAL-----ECT 99
Query: 49 HGKFNGEVKA 58
G F KA
Sbjct: 100 -GIFTSRDKA 108
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 53.6 bits (129), Expect = 1e-10
Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 2/42 (4%)
Query: 18 VKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKAD 59
V + ++ I D+ Y K E
Sbjct: 21 VTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFIP 60
Score = 45.1 bits (107), Expect = 1e-07
Identities = 12/64 (18%), Positives = 16/64 (25%), Gaps = 11/64 (17%)
Query: 1 MVYLFKYDSTHGKFNGEVKAD-----GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGE 55
Y K E G + +ND VD +V D+T G
Sbjct: 40 EAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIV-----DAT-PGGIGA 93
Query: 56 VKAD 59
Sbjct: 94 KNKP 97
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 42.4 bits (100), Expect = 1e-06
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 6/52 (11%)
Query: 18 VKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
V + V+ + D+ L + + V N V
Sbjct: 21 VSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVAIPDNERVKLFED 66
Score = 29.7 bits (67), Expect = 0.044
Identities = 10/64 (15%), Positives = 15/64 (23%), Gaps = 17/64 (26%)
Query: 7 YDSTHGKFNGEVKADGNFLVVAINDPFI-----------GVDYMVYLFKYDSTHGKFNGE 55
+ + V N V D I D +V D K G+
Sbjct: 42 RLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDADIVV-----DGA-PKKIGK 95
Query: 56 VKAD 59
+
Sbjct: 96 QNLE 99
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase);
oxydoreductase, oxidoreductase; HET: NAP; 2.10A
{Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 40.5 bits (95), Expect = 7e-06
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 18 VKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69
+ + V+ ++ + + L K + VK + + V G
Sbjct: 20 IAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTV 72
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone
methyltransferase, RRM fold, telomere, nuclear protein;
3.0A {Saccharomyces cerevisiae}
Length = 136
Score = 27.8 bits (61), Expect = 0.17
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 28 AINDPFIGVDYMVYLFKYDSTHGKFNGEVKA 58
A NDP + VYL KY S+ GK N KA
Sbjct: 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKA 68
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 25.1 bits (54), Expect = 1.7
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNG 54
L + I D D + + +T F
Sbjct: 10 PSLQIDIPDALSERDKVKFTVHTKTTLPTFQS 41
>2jen_A Xyloglucanase, endo-beta-1,4-glucanase; plant cell WALL,
glycosidase, hydrolase, family 12; HET: GLC BGC DIO;
1.4A {Bacillus licheniformis} PDB: 2jem_A
Length = 261
Score = 23.6 bits (50), Expect = 6.3
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 1 MVYLFKYDST-HGKFNGEVKADGNFLVV--AINDPFIGVDYMVYLFKYDSTHGKFNGEVK 57
M++L ++ G + V G+ V D G + V+ F + N ++
Sbjct: 157 MIWLNNTNAGPAGSYVETVSIGGHSWKVYKGYIDAGGGKGWNVFSFIRTANTQSANLNIR 216
Query: 58 ADGNFLVVNGN 68
N+L +
Sbjct: 217 DFTNYLADSKQ 227
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 23.5 bits (51), Expect = 8.8
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 13 KFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKF 52
K E+ ++ I D I VD + S GKF
Sbjct: 234 KLIDELHKRN-VKLITIVDHGIRVDQ--NYSPFLSGMGKF 270
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.143 0.429
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,111,354
Number of extensions: 53334
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 57
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)