RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6887
(70 letters)
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 59.5 bits (144), Expect = 1e-13
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI ++YMVY+FKYDSTHG F GEVKA+ LVV+G K
Sbjct: 26 VVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKK 69
Score = 35.3 bits (81), Expect = 1e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG F GEVKA+ LVV
Sbjct: 39 MVYMFKYDSTHGMFKGEVKAEDGALVV 65
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 56.5 bits (136), Expect = 2e-12
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
G +VAINDPFI ++YMVY+F+YDSTHGKF+G VKA+ LV+NGN
Sbjct: 23 SGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNP 71
Score = 36.8 bits (85), Expect = 5e-05
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
MVY+F+YDSTHGKF+G VKA+ LV+ DP G +Y+V
Sbjct: 41 MVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVV------ 94
Query: 47 STHGKFNGEVKA 58
+ G F KA
Sbjct: 95 ESTGVFTTMEKA 106
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 54.2 bits (130), Expect = 1e-11
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ +VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 23 RSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 70
Score = 37.6 bits (87), Expect = 2e-05
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M Y+ KYDSTHG+F+G V+ L+V
Sbjct: 40 MAYMLKYDSTHGRFDGTVEVKDGHLIV 66
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 49.9 bits (119), Expect = 5e-10
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ + + VVAIND + +L KYDS H KF G+V+ N L+V+G +
Sbjct: 22 RKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71
Score = 33.3 bits (76), Expect = 8e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYDS H KF G+V+ N L+V
Sbjct: 41 LAHLLKYDSVHKKFPGKVEYTENSLIV 67
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 48.1 bits (114), Expect = 2e-09
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ VVAINDPF+ ++++ YL KYDS HG+F EV FL++ K
Sbjct: 23 KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKK 70
Score = 27.7 bits (61), Expect = 0.085
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ YL KYDS HG+F EV FL++
Sbjct: 40 LCYLLKYDSVHGQFPCEVTHADGFLLI 66
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 44.2 bits (104), Expect = 7e-08
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFL-VVNGNK 69
+ D VV IND GV +L KYDS G F+ +VK G+ V+G
Sbjct: 22 RKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKV 72
Score = 28.0 bits (62), Expect = 0.069
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVAINDPFIGV 36
+L KYDS G F+ +VK G+ + ++ I V
Sbjct: 41 ASHLLKYDSILGTFDADVKTAGDSAIS-VDGKVIKV 75
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 42.7 bits (100), Expect = 3e-07
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ + VVA+ND + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 23 NPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
Score = 26.5 bits (58), Expect = 0.20
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVAINDPFI 34
+ +L KYDS HG+ + EV +GN LVV + +
Sbjct: 40 LAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIV 73
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 42.0 bits (98), Expect = 5e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLV 64
VVA+ D +Y Y +YD+ HGKF EV +
Sbjct: 30 EIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPS 71
Score = 28.1 bits (62), Expect = 0.061
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVAINDPFIGVDYMVY 41
Y +YD+ HGKF EV + VA +D + + +
Sbjct: 46 FAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRIL 86
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 40.0 bits (93), Expect = 3e-06
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 17 EVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
E + +VAIND +L +YD+ HGKF G V +G+++VVNG+K
Sbjct: 22 EGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDK 73
Score = 25.4 bits (55), Expect = 0.61
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADG 60
+L +YD+ HGKF G V +G+++V +N I VD + K + ++ G
Sbjct: 43 NAHLTRYDTAHGKFPGTVSVNGSYMV--VNGDKIRVDANRNPAQLPWGALKVDVVLECTG 100
Query: 61 NF 62
F
Sbjct: 101 FF 102
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 32.4 bits (73), Expect = 0.002
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVN 66
V IND + +L KYDS + +F GEV D +L V+
Sbjct: 23 GVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVD 65
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 30.0 bits (67), Expect = 0.011
Identities = 4/51 (7%), Positives = 15/51 (29%)
Query: 18 VKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGN 68
+ + +V + + + + + K + + + V G
Sbjct: 20 IIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGT 70
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 24.5 bits (53), Expect = 1.2
Identities = 6/53 (11%), Positives = 13/53 (24%), Gaps = 1/53 (1%)
Query: 18 VKADGNFLVVAINDPF-IGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ + V+ ++ M YD + + V G
Sbjct: 20 IAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTV 72
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 402
Score = 23.6 bits (50), Expect = 2.8
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADG 60
V+++ E L A G ++++ + K + DG
Sbjct: 61 QVWMY----CRLYRKLERFHRPELLDAAKA----GGEFLLRHARVAPPEKKCAFVLTRDG 112
Query: 61 N 61
Sbjct: 113 R 113
>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 22.0 bits (47), Expect = 6.9
Identities = 4/29 (13%), Positives = 16/29 (55%)
Query: 17 EVKADGNFLVVAINDPFIGVDYMVYLFKY 45
+K + V+ +ND + +++++ + +
Sbjct: 2 ALKPPSMYKVILVNDDYTPMEFVIDVLQK 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.143 0.429
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 273,728
Number of extensions: 10448
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 27
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)