Query psy6888
Match_columns 69
No_of_seqs 124 out of 1081
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 21:01:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00846 Gp_dh_N Glyceraldeh 99.9 6.2E-23 1.3E-27 137.7 4.9 61 7-67 79-141 (149)
2 PF00044 Gp_dh_N: Glyceraldehy 99.9 4.9E-23 1.1E-27 139.2 1.7 62 7-68 80-145 (151)
3 PTZ00434 cytosolic glyceraldeh 99.9 1.6E-22 3.4E-27 152.9 4.7 59 7-65 96-156 (361)
4 PRK08289 glyceraldehyde-3-phos 99.8 2.3E-19 5E-24 139.6 4.2 61 7-67 216-281 (477)
5 PTZ00353 glycosomal glyceralde 99.7 4.5E-18 9.6E-23 127.7 4.7 60 7-66 84-144 (342)
6 PRK15425 gapA glyceraldehyde-3 99.7 6.8E-18 1.5E-22 126.1 4.3 62 7-68 81-144 (331)
7 PLN02358 glyceraldehyde-3-phos 99.7 1.3E-17 2.8E-22 124.6 4.3 60 7-66 87-147 (338)
8 PLN03096 glyceraldehyde-3-phos 99.7 1.8E-17 4E-22 126.4 4.0 60 7-66 142-203 (395)
9 TIGR01534 GAPDH-I glyceraldehy 99.7 2.2E-17 4.7E-22 122.9 3.8 60 7-66 82-143 (327)
10 PLN02272 glyceraldehyde-3-phos 99.7 3.4E-17 7.4E-22 125.8 4.9 60 7-66 166-226 (421)
11 COG0057 GapA Glyceraldehyde-3- 99.7 6E-17 1.3E-21 121.9 5.6 61 7-67 81-144 (335)
12 PLN02237 glyceraldehyde-3-phos 99.7 3.6E-17 7.8E-22 126.4 3.8 59 8-66 158-219 (442)
13 PRK07403 glyceraldehyde-3-phos 99.7 6.4E-17 1.4E-21 121.2 3.7 59 7-65 82-143 (337)
14 PTZ00023 glyceraldehyde-3-phos 99.6 9.2E-17 2E-21 120.2 4.3 60 7-66 82-143 (337)
15 KOG0657|consensus 99.6 8.1E-17 1.7E-21 119.2 2.5 61 6-66 65-126 (285)
16 PRK07729 glyceraldehyde-3-phos 99.6 1.5E-16 3.3E-21 119.5 3.6 59 7-65 81-141 (343)
17 PRK08955 glyceraldehyde-3-phos 99.6 9.6E-16 2.1E-20 114.4 3.8 58 6-65 81-141 (334)
18 PRK13535 erythrose 4-phosphate 99.6 1.6E-15 3.5E-20 113.4 4.2 61 6-66 82-145 (336)
19 TIGR01532 E4PD_g-proteo D-eryt 99.5 1.8E-14 3.9E-19 107.0 4.6 61 6-66 80-143 (325)
20 TIGR01546 GAPDH-II_archae glyc 99.1 1.2E-10 2.7E-15 87.2 4.3 55 14-68 74-131 (333)
21 PRK04207 glyceraldehyde-3-phos 98.2 1.8E-06 3.8E-11 64.2 3.7 53 14-67 77-133 (341)
22 PRK14874 aspartate-semialdehyd 96.1 0.0032 7E-08 46.4 1.8 50 15-66 63-118 (334)
23 TIGR01296 asd_B aspartate-semi 95.9 0.0048 1E-07 45.9 1.8 50 14-65 60-115 (339)
24 PF00977 His_biosynth: Histidi 76.8 2.5 5.3E-05 29.7 2.5 26 21-46 78-103 (229)
25 PRK08300 acetaldehyde dehydrog 75.7 3.7 8E-05 30.8 3.3 48 15-63 70-118 (302)
26 cd04723 HisA_HisF Phosphoribos 75.4 4.3 9.3E-05 28.5 3.4 28 20-47 82-109 (233)
27 COG4930 Predicted ATP-dependen 73.7 3.1 6.8E-05 34.1 2.6 24 31-54 632-656 (683)
28 PRK13587 1-(5-phosphoribosyl)- 72.5 5.7 0.00012 28.1 3.5 29 19-47 79-107 (234)
29 PRK07847 amidophosphoribosyltr 70.7 4.4 9.5E-05 32.4 2.8 38 21-60 378-417 (510)
30 PRK08341 amidophosphoribosyltr 68.8 5.8 0.00012 31.1 3.1 41 17-59 341-383 (442)
31 PRK13586 1-(5-phosphoribosyl)- 67.6 7.6 0.00016 27.6 3.3 28 20-47 77-104 (232)
32 TIGR02129 hisA_euk phosphoribo 67.5 6.7 0.00015 28.8 3.0 26 20-46 80-105 (253)
33 PRK14114 1-(5-phosphoribosyl)- 63.7 11 0.00023 27.0 3.4 29 20-48 77-105 (241)
34 COG0136 Asd Aspartate-semialde 63.5 9.7 0.00021 29.3 3.3 55 5-63 58-118 (334)
35 TIGR01919 hisA-trpF 1-(5-phosp 61.3 12 0.00025 26.8 3.3 26 22-47 80-105 (243)
36 cd04732 HisA HisA. Phosphorib 60.1 12 0.00026 25.4 3.1 29 19-47 76-104 (234)
37 TIGR01745 asd_gamma aspartate- 56.7 14 0.0003 28.5 3.2 51 14-64 63-119 (366)
38 PLN02446 (5-phosphoribosyl)-5- 56.5 14 0.00031 27.3 3.1 26 21-47 88-113 (262)
39 PRK06781 amidophosphoribosyltr 56.2 14 0.00029 29.3 3.1 41 17-59 355-397 (471)
40 TIGR03215 ac_ald_DH_ac acetald 55.7 15 0.00033 27.2 3.2 48 15-63 64-112 (285)
41 TIGR00735 hisF imidazoleglycer 54.3 16 0.00035 25.8 3.0 29 20-48 78-106 (254)
42 PF13691 Lactamase_B_4: tRNase 53.1 13 0.00028 22.0 2.0 21 43-63 2-24 (63)
43 PRK07631 amidophosphoribosyltr 52.6 16 0.00034 29.0 3.0 41 17-59 355-397 (475)
44 PRK14024 phosphoribosyl isomer 52.3 23 0.0005 24.9 3.5 25 22-46 81-105 (241)
45 PF00174 Oxidored_molyb: Oxido 51.8 17 0.00037 24.3 2.7 58 9-66 56-132 (169)
46 PRK06388 amidophosphoribosyltr 48.9 19 0.00041 28.5 2.9 41 17-59 363-405 (474)
47 PRK00748 1-(5-phosphoribosyl)- 46.6 33 0.00071 23.3 3.5 29 19-47 77-105 (233)
48 PRK13585 1-(5-phosphoribosyl)- 45.0 32 0.0007 23.6 3.3 25 22-46 82-106 (241)
49 cd02110 SO_family_Moco_dimer S 43.3 44 0.00096 24.8 4.0 59 9-67 66-144 (317)
50 COG0106 HisA Phosphoribosylfor 41.4 37 0.0008 25.1 3.2 28 21-48 80-107 (241)
51 PRK12404 stage V sporulation p 41.3 20 0.00043 27.7 1.9 38 8-48 99-137 (334)
52 PRK02083 imidazole glycerol ph 41.0 34 0.00073 23.9 2.9 28 20-47 78-105 (253)
53 TIGR00007 phosphoribosylformim 40.1 49 0.0011 22.5 3.5 26 21-46 77-102 (230)
54 PLN02617 imidazole glycerol ph 40.1 28 0.0006 28.1 2.6 18 29-46 338-355 (538)
55 PRK09246 amidophosphoribosyltr 39.9 24 0.00053 27.9 2.2 39 19-59 367-407 (501)
56 TIGR00575 dnlj DNA ligase, NAD 39.4 55 0.0012 26.9 4.2 41 18-60 589-632 (652)
57 PF08545 ACP_syn_III: 3-Oxoacy 39.3 17 0.00037 21.2 1.0 20 27-46 13-33 (80)
58 PF03050 DDE_Tnp_IS66: Transpo 39.1 8.8 0.00019 26.9 -0.3 31 1-31 231-269 (271)
59 PRK07349 amidophosphoribosyltr 37.3 34 0.00075 27.3 2.7 40 18-59 385-426 (500)
60 PHA02031 putative DnaG-like pr 37.3 44 0.00096 25.0 3.2 34 14-47 180-214 (266)
61 COG0358 DnaG DNA primase (bact 37.2 24 0.00051 28.1 1.8 36 9-45 260-296 (568)
62 PRK04128 1-(5-phosphoribosyl)- 36.6 57 0.0012 23.0 3.5 29 19-47 76-104 (228)
63 KOG3055|consensus 36.3 31 0.00067 25.6 2.2 20 27-46 92-111 (263)
64 TIGR03849 arch_ComA phosphosul 36.0 34 0.00074 25.1 2.4 18 29-46 138-155 (237)
65 KOG2697|consensus 33.8 38 0.00081 26.8 2.4 23 37-59 155-181 (446)
66 TIGR00646 MG010 DNA primase-re 33.2 35 0.00075 24.8 2.0 37 9-46 123-161 (218)
67 TIGR00201 comF comF family pro 32.8 46 0.001 22.4 2.5 22 22-44 164-185 (190)
68 PRK14351 ligA NAD-dependent DN 32.0 79 0.0017 26.3 4.1 43 17-61 613-658 (689)
69 PRK14350 ligA NAD-dependent DN 31.1 87 0.0019 26.1 4.2 40 18-59 598-640 (669)
70 cd04723 HisA_HisF Phosphoribos 31.0 76 0.0016 22.2 3.4 28 20-47 193-220 (233)
71 PF04016 DUF364: Domain of unk 30.1 60 0.0013 21.4 2.6 35 15-49 62-98 (147)
72 PRK08525 amidophosphoribosyltr 29.9 37 0.00081 26.4 1.8 22 22-44 352-373 (445)
73 COG4982 3-oxoacyl-[acyl-carrie 29.5 59 0.0013 28.0 3.0 34 13-47 393-429 (866)
74 PF00106 adh_short: short chai 29.3 71 0.0015 19.7 2.8 31 18-48 2-34 (167)
75 PRK14719 bifunctional RNAse/5- 29.1 55 0.0012 25.0 2.6 40 6-46 33-74 (360)
76 TIGR01134 purF amidophosphorib 28.7 56 0.0012 25.4 2.6 38 19-58 347-386 (442)
77 PRK05793 amidophosphoribosyltr 28.5 41 0.00088 26.4 1.8 27 21-48 364-392 (469)
78 COG0107 HisF Imidazoleglycerol 28.3 31 0.00067 25.9 1.1 27 22-48 80-106 (256)
79 cd04731 HisF The cyclase subun 28.3 83 0.0018 21.7 3.2 27 21-47 76-102 (243)
80 PRK04966 hypothetical protein; 27.9 39 0.00086 20.7 1.3 38 2-45 19-56 (72)
81 PRK09123 amidophosphoribosyltr 27.5 89 0.0019 24.8 3.5 35 22-58 372-408 (479)
82 TIGR00978 asd_EA aspartate-sem 27.3 45 0.00097 24.7 1.8 50 15-64 73-126 (341)
83 PF09363 XFP_C: XFP C-terminal 27.0 45 0.00097 24.1 1.7 33 24-56 6-39 (203)
84 PF11183 PmrD: Polymyxin resis 26.6 62 0.0013 20.4 2.1 22 1-22 1-22 (82)
85 PRK06195 DNA polymerase III su 26.4 1E+02 0.0022 22.5 3.5 42 17-60 224-268 (309)
86 KOG0572|consensus 26.4 1.1E+02 0.0024 24.7 3.9 37 22-60 368-406 (474)
87 PRK01033 imidazole glycerol ph 26.3 96 0.0021 22.0 3.3 26 21-46 79-104 (258)
88 PF12874 zf-met: Zinc-finger o 26.0 63 0.0014 14.5 1.6 14 24-37 9-22 (25)
89 KOG1803|consensus 26.0 73 0.0016 26.8 2.9 26 22-48 212-238 (649)
90 PF15587 Imm48: Immunity prote 25.9 43 0.00094 23.4 1.4 21 44-64 82-102 (155)
91 PRK07272 amidophosphoribosyltr 25.7 58 0.0013 25.9 2.2 41 17-59 357-399 (484)
92 COG0272 Lig NAD-dependent DNA 25.2 1.1E+02 0.0024 25.8 3.8 42 18-61 599-643 (667)
93 PLN02440 amidophosphoribosyltr 24.9 72 0.0016 25.1 2.6 23 21-44 351-373 (479)
94 PRK02458 ribose-phosphate pyro 24.5 51 0.0011 24.7 1.7 21 22-44 230-251 (323)
95 PF04131 NanE: Putative N-acet 24.1 1.3E+02 0.0027 21.6 3.5 26 19-44 147-172 (192)
96 TIGR01251 ribP_PPkin ribose-ph 23.9 47 0.001 24.4 1.3 23 22-46 222-245 (308)
97 COG1929 Glycerate kinase [Carb 23.6 86 0.0019 24.8 2.8 20 27-46 114-133 (378)
98 COG1556 Uncharacterized conser 23.3 1.2E+02 0.0026 22.1 3.3 29 31-59 173-205 (218)
99 PF01136 Peptidase_U32: Peptid 22.8 1.5E+02 0.0033 20.1 3.6 31 15-46 36-68 (233)
100 COG3669 Alpha-L-fucosidase [Ca 22.8 72 0.0016 25.6 2.2 23 25-47 54-76 (430)
101 PRK13656 trans-2-enoyl-CoA red 22.6 60 0.0013 25.6 1.8 42 4-45 23-73 (398)
102 cd02812 PcrB_like PcrB_like pr 22.4 1.4E+02 0.0031 21.4 3.5 27 21-47 180-206 (219)
103 PRK06598 aspartate-semialdehyd 22.3 73 0.0016 24.6 2.1 50 15-64 65-120 (369)
104 PF13086 AAA_11: AAA domain; P 22.1 58 0.0013 20.9 1.4 27 22-48 28-62 (236)
105 PRK02269 ribose-phosphate pyro 22.1 74 0.0016 23.7 2.1 21 22-44 229-250 (320)
106 KOG4201|consensus 21.7 1.2E+02 0.0027 22.9 3.2 24 21-45 243-266 (289)
107 cd02113 bact_SoxC_Moco bacteri 21.7 1.6E+02 0.0034 22.3 3.8 59 9-67 80-151 (326)
108 PRK11595 DNA utilization prote 20.8 98 0.0021 21.6 2.4 22 22-44 199-220 (227)
109 PRK07956 ligA NAD-dependent DN 20.7 1.7E+02 0.0037 24.2 4.1 42 17-60 594-638 (665)
110 cd00419 Ferrochelatase_C Ferro 20.4 1.2E+02 0.0026 19.7 2.6 21 28-48 80-100 (135)
111 COG1086 Predicted nucleoside-d 20.4 73 0.0016 26.5 1.9 38 22-59 351-389 (588)
112 COG0552 FtsY Signal recognitio 20.1 1.1E+02 0.0024 23.7 2.7 26 22-47 150-175 (340)
113 PRK06063 DNA polymerase III su 20.0 2.2E+02 0.0047 21.1 4.2 42 18-61 237-280 (313)
No 1
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.87 E-value=6.2e-23 Score=137.70 Aligned_cols=61 Identities=34% Similarity=0.419 Sum_probs=57.1
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKE 67 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~ 67 (69)
.+|||.++|+|+|++ ||.|+++++++.||++||||||+|||++| ++||||||||++|++++
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~ 141 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPED 141 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCC
Confidence 589999999999997 99999999999999999999999999987 46999999999999864
No 2
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.86 E-value=4.9e-23 Score=139.22 Aligned_cols=62 Identities=40% Similarity=0.468 Sum_probs=56.7
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCC-CC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWK-EV 68 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~-~i 68 (69)
++|||..+|+++|++ ||+|++++.++.|+++||||||+|+|++| +|||||||||+.|+++ +|
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~i 145 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHI 145 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSE
T ss_pred cccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCE
Confidence 689999999999998 99999999999999999999999999986 7899999999999987 54
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=99.86 E-value=1.6e-22 Score=152.86 Aligned_cols=59 Identities=31% Similarity=0.411 Sum_probs=56.4
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~ 65 (69)
.||||-++|+++|++ ||+|++++++++||++||||||||||++| .|||||||||++|++
T Consensus 96 ~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~ 156 (361)
T PTZ00434 96 ADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSP 156 (361)
T ss_pred hhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCc
Confidence 589999999999997 99999999999999999999999999987 579999999999987
No 4
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.77 E-value=2.3e-19 Score=139.57 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=56.0
Q ss_pred cccccccccce--eeEe-eeceecHHHHHHHhh-CCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFL--IFLV-LFLSVNNILQTAHLA-GGAKKVIISAPSAD-APMFVCGVNLDKFEWKE 67 (69)
Q Consensus 7 ~~i~~t~~~~~--~~~~-tG~~~t~e~a~~HL~-~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~ 67 (69)
++|||+++|++ +|+. ||+|++++++++||+ +||||||||||+++ +||+|+||||+.|++++
T Consensus 216 ~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~ 281 (477)
T PRK08289 216 EEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDED 281 (477)
T ss_pred HHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCC
Confidence 68999999999 7775 999999999999999 89999999999986 79999999999998643
No 5
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.72 E-value=4.5e-18 Score=127.68 Aligned_cols=60 Identities=27% Similarity=0.304 Sum_probs=57.2
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~ 66 (69)
+++||..+|+++|++ ||.|++++++++|+++||||||||+|++|.||+|+||||+.|+++
T Consensus 84 ~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~ 144 (342)
T PTZ00353 84 VEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSAS 144 (342)
T ss_pred ccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCC
Confidence 689999999999997 999999999999999999999999999889999999999999874
No 6
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.71 E-value=6.8e-18 Score=126.09 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=57.2
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~i 68 (69)
+++||.++|+++|+. ||.|++++.+.+|+++|||||++|+|+++ .|+||+||||+.|++.+|
T Consensus 81 ~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~I 144 (331)
T PRK15425 81 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI 144 (331)
T ss_pred hhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCCCCE
Confidence 689999999999996 99999999999999999999999999875 699999999999976444
No 7
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.69 E-value=1.3e-17 Score=124.60 Aligned_cols=60 Identities=40% Similarity=0.500 Sum_probs=56.8
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~ 66 (69)
+++||.+.|+++|++ ||.|++++.+..|+++|||||++|+|++|.|+||+||||+.|+++
T Consensus 87 ~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~ 147 (338)
T PLN02358 87 EDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 147 (338)
T ss_pred ccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCC
Confidence 389999999999997 999999999999999999999999999888999999999999864
No 8
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.68 E-value=1.8e-17 Score=126.39 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=56.3
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~ 66 (69)
+++||.+.|+++|++ ||.|++++.++.|+++|||||++|+|+++ +||+|+||||+.|+++
T Consensus 142 ~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~ 203 (395)
T PLN03096 142 LNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHS 203 (395)
T ss_pred ccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccC
Confidence 689999999999997 99999999999999999999999999875 6999999999999864
No 9
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=99.68 E-value=2.2e-17 Score=122.92 Aligned_cols=60 Identities=33% Similarity=0.413 Sum_probs=56.4
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~ 66 (69)
+++||.++|+++|+. ||.|++++.+++|+++|||||++|+|++| +||+|+|||++.|+++
T Consensus 82 ~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~ 143 (327)
T TIGR01534 82 SDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPE 143 (327)
T ss_pred ccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCC
Confidence 689999999999997 99999999999999999999999999877 7999999999999864
No 10
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.68 E-value=3.4e-17 Score=125.82 Aligned_cols=60 Identities=45% Similarity=0.522 Sum_probs=56.7
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~ 66 (69)
+++||-++|+|+|++ ||.|++++.+.+|+++||||||||+|++|.|++|+||||+.|+++
T Consensus 166 ~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~ 226 (421)
T PLN02272 166 AEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPN 226 (421)
T ss_pred ccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCC
Confidence 489999999999997 999999999999999999999999998888999999999999864
No 11
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6e-17 Score=121.90 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=56.9
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhC-CCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAG-GAKKVIISAPSAD-APMFVCGVNLDKFEWKE 67 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~-GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~ 67 (69)
++|||.++|++.|+. ||.|+++|++++|+++ |||||++|+|+++ ++|+||||||+.|++++
T Consensus 81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~ 144 (335)
T COG0057 81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGH 144 (335)
T ss_pred HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCC
Confidence 689999999999997 9999999999999998 6999999999987 89999999999999643
No 12
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=99.67 E-value=3.6e-17 Score=126.43 Aligned_cols=59 Identities=31% Similarity=0.458 Sum_probs=55.7
Q ss_pred ccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCC
Q psy6888 8 EIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWK 66 (69)
Q Consensus 8 ~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~ 66 (69)
++||.+.|+++|++ ||.|++++.++.|+++|||||++|||++| +||||+||||+.|+++
T Consensus 158 ~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~ 219 (442)
T PLN02237 158 KLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHE 219 (442)
T ss_pred hCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcC
Confidence 99999999999997 99999999999999999999999999865 6999999999999864
No 13
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.65 E-value=6.4e-17 Score=121.20 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=55.6
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~ 65 (69)
+|+||.++|+++|++ ||.|++++.++.|+++|||||++|+|++| .||+|+||||+.|++
T Consensus 82 ~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~ 143 (337)
T PRK07403 82 LNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDH 143 (337)
T ss_pred ccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhcc
Confidence 899999999999997 99999999999999999999999999765 499999999999985
No 14
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.65 E-value=9.2e-17 Score=120.25 Aligned_cols=60 Identities=33% Similarity=0.434 Sum_probs=56.3
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~ 66 (69)
.||||-+.|+++|+. ||.|++++.+..|+++|||||++|+|+++ .|++|+||||+.|+++
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~ 143 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKS 143 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCC
Confidence 689999999999997 99999999999999999999999999875 6999999999999864
No 15
>KOG0657|consensus
Probab=99.63 E-value=8.1e-17 Score=119.16 Aligned_cols=61 Identities=43% Similarity=0.459 Sum_probs=57.9
Q ss_pred ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888 6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66 (69)
Q Consensus 6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~ 66 (69)
..+|+|-+-|++++.. ||+|++.+++..|+++||||||||||++|.||||||||+++|+++
T Consensus 65 p~~i~w~~~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~ 126 (285)
T KOG0657|consen 65 PAKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNS 126 (285)
T ss_pred cccCccccccceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccc
Confidence 3579999999999996 999999999999999999999999999999999999999999874
No 16
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.63 E-value=1.5e-16 Score=119.50 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=55.4
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~ 65 (69)
+|+||...|+++|+. ||.|++++.++.|+++|||||++|+|++| ++++|+||||+.|++
T Consensus 81 ~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~ 141 (343)
T PRK07729 81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDI 141 (343)
T ss_pred hhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhcc
Confidence 789999999999997 99999999999999999999999999876 678899999999986
No 17
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.58 E-value=9.6e-16 Score=114.41 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=53.5
Q ss_pred ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCC
Q psy6888 6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEW 65 (69)
Q Consensus 6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~ 65 (69)
-+++||. |+++|+. ||.|++++.+..|+++|||||++|+|++| .|++|+|||++.|++
T Consensus 81 ~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~ 141 (334)
T PRK08955 81 IADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDP 141 (334)
T ss_pred hhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcc
Confidence 3689996 9999997 99999999999999999999999999754 599999999999986
No 18
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=99.57 E-value=1.6e-15 Score=113.41 Aligned_cols=61 Identities=28% Similarity=0.294 Sum_probs=55.7
Q ss_pred ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-C-CCeEEecCCCCCCCCC
Q psy6888 6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-D-APMFVCGVNLDKFEWK 66 (69)
Q Consensus 6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d-~pt~V~GVN~~~y~~~ 66 (69)
-+++||-+.|+|+|++ ||.|.+++.+..|+++|||+|++|+|++ | ++++|+||||+.|++.
T Consensus 82 p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~ 145 (336)
T PRK13535 82 IASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAE 145 (336)
T ss_pred cccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcC
Confidence 3689999999999997 9999999999999999999999999986 5 4589999999999864
No 19
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=99.50 E-value=1.8e-14 Score=107.01 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=55.5
Q ss_pred ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-C-CCeEEecCCCCCCCCC
Q psy6888 6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-D-APMFVCGVNLDKFEWK 66 (69)
Q Consensus 6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d-~pt~V~GVN~~~y~~~ 66 (69)
-+++||.+.|+|+|++ ||.|.+++.+.+|+++|||+|++|+|++ | ++++|+||||+.|+++
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~ 143 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAE 143 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCC
Confidence 3689999999999997 9999999999999999999999999976 4 4589999999999864
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=99.07 E-value=1.2e-10 Score=87.20 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=49.7
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWKEV 68 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~~i 68 (69)
.++|++++ ||.++.++.++.|+++|+|+|++|+|++| +++||+|+|+++|++.+|
T Consensus 74 ~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~~ 131 (333)
T TIGR01546 74 EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKDY 131 (333)
T ss_pred hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCce
Confidence 46888887 99999999999999999999999999987 479999999999987664
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.17 E-value=1.8e-06 Score=64.19 Aligned_cols=53 Identities=17% Similarity=-0.011 Sum_probs=45.2
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC--CeEEecCCCCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA--PMFVCGVNLDKFEWKE 67 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~--pt~V~GVN~~~y~~~~ 67 (69)
.++|.|+. ||.+.+.+.+..|+++| ++||+++|++ +. .+||+|||++.+.+.+
T Consensus 77 ~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~~ 133 (341)
T PRK04207 77 EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGKD 133 (341)
T ss_pred ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCCC
Confidence 36888887 99999999999999999 9999999974 33 4689999999987544
No 22
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.11 E-value=0.0032 Score=46.44 Aligned_cols=50 Identities=30% Similarity=0.241 Sum_probs=40.1
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEE--cCCC--C-CCCeEEecCCCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVII--SAPS--A-DAPMFVCGVNLDKFEWK 66 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVII--SaPs--~-d~pt~V~GVN~~~y~~~ 66 (69)
|+|.|+. ||...+++.+.+|+++|+ +|| |++. + +.|.++.++|++.++..
T Consensus 63 ~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~ 118 (334)
T PRK14874 63 GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEH 118 (334)
T ss_pred CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhh
Confidence 7888886 999999999999999998 555 4432 2 46999999999988653
No 23
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.86 E-value=0.0048 Score=45.93 Aligned_cols=50 Identities=28% Similarity=0.256 Sum_probs=39.6
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC----C-CCCeEEecCCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS----A-DAPMFVCGVNLDKFEW 65 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs----~-d~pt~V~GVN~~~y~~ 65 (69)
-+++.++. ||...+++.+..|+++|+ +||..++ + +.|.++.+||++.+++
T Consensus 60 ~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~ 115 (339)
T TIGR01296 60 EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKE 115 (339)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhh
Confidence 36788776 999999999999999998 3663332 2 4689999999988864
No 24
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=76.81 E-value=2.5 Score=29.66 Aligned_cols=26 Identities=23% Similarity=0.029 Sum_probs=21.1
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
+-|=.++.++++..++.||.|||+++
T Consensus 78 vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 78 VGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp EESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred EeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 46778899999999999999999975
No 25
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=75.73 E-value=3.7 Score=30.84 Aligned_cols=48 Identities=23% Similarity=0.177 Sum_probs=40.3
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y 63 (69)
+++.|+. ||.....+.+...+++| +.||.-.|....|.+|-.||.+..
T Consensus 70 dIDiVf~AT~a~~H~e~a~~a~eaG-k~VID~sPA~~~PlvVP~VN~~~~ 118 (302)
T PRK08300 70 DIDIVFDATSAGAHVRHAAKLREAG-IRAIDLTPAAIGPYCVPAVNLDEH 118 (302)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcC-CeEEECCccccCCcccCcCCHHHH
Confidence 5778886 99998889998888888 568888888888999999997654
No 26
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=75.40 E-value=4.3 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.025 Sum_probs=23.5
Q ss_pred EeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 20 LVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 20 ~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
.+-|=.++.|+++..|.+||.||||.+-
T Consensus 82 ~vgGGir~~edv~~~l~~Ga~~viigt~ 109 (233)
T cd04723 82 WVDGGIRSLENAQEWLKRGASRVIVGTE 109 (233)
T ss_pred EEecCcCCHHHHHHHHHcCCCeEEEcce
Confidence 3467778999999999999999999654
No 27
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=73.73 E-value=3.1 Score=34.09 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=17.0
Q ss_pred HHHHhhCCCCeEEEcCCCC-CCCeE
Q psy6888 31 QTAHLAGGAKKVIISAPSA-DAPMF 54 (69)
Q Consensus 31 a~~HL~~GAKkVIISaPs~-d~pt~ 54 (69)
++..+++|||||++...|+ |.||+
T Consensus 632 lq~~~dsgakkv~lp~ssa~~i~tv 656 (683)
T COG4930 632 LQLAFDSGAKKVLLPMSSAVDIPTV 656 (683)
T ss_pred HHHHHhcCCceEEEeccccCCcCCC
Confidence 3455679999999977665 55553
No 28
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.47 E-value=5.7 Score=28.15 Aligned_cols=29 Identities=14% Similarity=-0.071 Sum_probs=24.2
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
+..-|=.++.|+++..+.+||.|||+.+-
T Consensus 79 i~vGGGIrs~e~v~~~l~~Ga~kvvigt~ 107 (234)
T PRK13587 79 IEVGGGIRTKSQIMDYFAAGINYCIVGTK 107 (234)
T ss_pred EEEcCCcCCHHHHHHHHHCCCCEEEECch
Confidence 33467788999999999999999999653
No 29
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=70.67 E-value=4.4 Score=32.38 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=23.4
Q ss_pred eeeceecHHHHHHHhhCCCCeEEE--cCCCCCCCeEEecCCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVII--SAPSADAPMFVCGVNL 60 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVII--SaPs~d~pt~V~GVN~ 60 (69)
.||.. .++.++.-.++|||+|.+ ++|+---|. .||++-
T Consensus 378 ttG~T-~~~~~~~L~~~ga~~v~~ri~sPpi~~pc-~yGid~ 417 (510)
T PRK07847 378 VRGNT-QRALVRMLREAGAAEVHVRISSPPVKWPC-FYGIDF 417 (510)
T ss_pred CchHH-HHHHHHHHHHcCCCEEEEEECCCCcCCCC-cCcCCC
Confidence 38865 344555556789999874 666533343 367753
No 30
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=68.77 E-value=5.8 Score=31.06 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=23.9
Q ss_pred eeeEeeeceecHHHHHHHhhCCCCeEEE--cCCCCCCCeEEecCC
Q psy6888 17 LIFLVLFLSVNNILQTAHLAGGAKKVII--SAPSADAPMFVCGVN 59 (69)
Q Consensus 17 ~~~~~tG~~~t~e~a~~HL~~GAKkVII--SaPs~d~pt~V~GVN 59 (69)
|.++.||.. .++.++.-.++|||+|-+ ++|+--.|. .||+.
T Consensus 341 DD~IttGtT-l~~~~~~L~~aGAk~V~~~~~spp~~~pc-~~gid 383 (442)
T PRK08341 341 DDSIVRGTT-MKRIVKMLRDAGAREVHVRIASPPIRYPC-YMGID 383 (442)
T ss_pred eeeeccHHH-HHHHHHHHHhcCCcEEEEEEcCCCccCCC-ceeee
Confidence 344448875 333444444689998764 555433455 56764
No 31
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.63 E-value=7.6 Score=27.62 Aligned_cols=28 Identities=11% Similarity=-0.194 Sum_probs=23.2
Q ss_pred EeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 20 LVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 20 ~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
.+-|=.++.++++..++.||.||+|.+-
T Consensus 77 ~vGGGIrs~e~~~~~l~~Ga~kvvigt~ 104 (232)
T PRK13586 77 QVGGGIRDIEKAKRLLSLDVNALVFSTI 104 (232)
T ss_pred EEeCCcCCHHHHHHHHHCCCCEEEECch
Confidence 3456778999999999999999999654
No 32
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=67.50 E-value=6.7 Score=28.85 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.1
Q ss_pred EeeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 20 LVLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 20 ~~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
..+|=.++ +.++..|++||.||+|++
T Consensus 80 ~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 80 QVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred EEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 34666676 999999999999999976
No 33
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=63.69 E-value=11 Score=27.04 Aligned_cols=29 Identities=10% Similarity=-0.166 Sum_probs=24.0
Q ss_pred EeeeceecHHHHHHHhhCCCCeEEEcCCC
Q psy6888 20 LVLFLSVNNILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 20 ~~tG~~~t~e~a~~HL~~GAKkVIISaPs 48 (69)
.+-|=.++.++++..++.||.||||.+-.
T Consensus 77 ~vGGGIrs~e~~~~~l~~Ga~rvvigT~a 105 (241)
T PRK14114 77 QIGGGIRSLDYAEKLRKLGYRRQIVSSKV 105 (241)
T ss_pred EEecCCCCHHHHHHHHHCCCCEEEECchh
Confidence 34677789999999999999999997643
No 34
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=63.50 E-value=9.7 Score=29.27 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=39.7
Q ss_pred eecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC-----CCCCeEEecCCCCCC
Q psy6888 5 VRDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDKF 63 (69)
Q Consensus 5 ~~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs-----~d~pt~V~GVN~~~y 63 (69)
+++...|. ++|+++. .|--.+++-+..-.++| .++|+..| +|.|-+|-.||.+.+
T Consensus 58 ~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G--~~VIdnsSa~Rm~~DVPLVVPeVN~~~l 118 (334)
T COG0136 58 AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAG--CVVIDNSSAFRMDPDVPLVVPEVNPEHL 118 (334)
T ss_pred cccccccc--cCCEEEEeCchHHHHHHHHHHHHcC--CEEEeCCcccccCCCCCEecCCcCHHHH
Confidence 35566666 6778886 66555677777777777 68887776 257999999997654
No 35
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=61.34 E-value=12 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=22.5
Q ss_pred eeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
-|=.++.+.++..|+.||.||++.+-
T Consensus 80 gGGIrs~e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 80 SGGRRDDSSLRAALTGGRARVNGGTA 105 (243)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEECch
Confidence 56678999999999999999999764
No 36
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=60.13 E-value=12 Score=25.41 Aligned_cols=29 Identities=21% Similarity=-0.086 Sum_probs=23.4
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
+..-|-.++.+.++..++.||.+|++...
T Consensus 76 v~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 76 VQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 33467788999999999999999998554
No 37
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=56.67 E-value=14 Score=28.51 Aligned_cols=51 Identities=22% Similarity=0.093 Sum_probs=37.9
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC-----CCCCeEEecCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDKFE 64 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs-----~d~pt~V~GVN~~~y~ 64 (69)
-|+++++. .|--.+++-+..-.++|+..++|+..| +|.|.+|-.||.+.+.
T Consensus 63 ~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~ 119 (366)
T TIGR01745 63 KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVIT 119 (366)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHH
Confidence 37888886 666667766666667898777776665 2579999999987654
No 38
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=56.54 E-value=14 Score=27.31 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=21.0
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
+-|=.++ ++++..|+.||.||||.+-
T Consensus 88 vGGGIR~-e~i~~~l~~Ga~rViigT~ 113 (262)
T PLN02446 88 VGGGVNS-ENAMSYLDAGASHVIVTSY 113 (262)
T ss_pred EeCCccH-HHHHHHHHcCCCEEEEchH
Confidence 3455565 9999999999999999764
No 39
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=56.25 E-value=14 Score=29.26 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=25.3
Q ss_pred eeeEeeeceecHHHHHHHhhCCCCeEE--EcCCCCCCCeEEecCC
Q psy6888 17 LIFLVLFLSVNNILQTAHLAGGAKKVI--ISAPSADAPMFVCGVN 59 (69)
Q Consensus 17 ~~~~~tG~~~t~e~a~~HL~~GAKkVI--ISaPs~d~pt~V~GVN 59 (69)
|.++.||.. .++.++.-.++|||+|- |++|+---|. .||+.
T Consensus 355 DDvittGtT-l~~~~~~Lk~aGA~eV~v~i~sPpi~~pc-~yGid 397 (471)
T PRK06781 355 DDSIVRGTT-SKRIVRMLREAGATEVHVRIASPPLKYPC-FYGID 397 (471)
T ss_pred eceeccchH-HHHHHHHHHHcCCcEEEEEECCCCccCCc-ccccC
Confidence 444459986 44566667789999865 6777532332 25654
No 40
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=55.74 E-value=15 Score=27.16 Aligned_cols=48 Identities=27% Similarity=0.182 Sum_probs=39.4
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y 63 (69)
++|.|.+ |+.....+.+...+++| |.||.-.|....|.++-.||-+..
T Consensus 64 dIDaV~iaTp~~~H~e~a~~al~aG-k~VIdekPa~~~plvvp~VN~~~~ 112 (285)
T TIGR03215 64 DIDIVFDATSAKAHARHARLLAELG-KIVIDLTPAAIGPYVVPAVNLDEH 112 (285)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHcC-CEEEECCccccCCccCCCcCHHHH
Confidence 5777776 88888888888888888 678888898888999999996544
No 41
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=54.27 E-value=16 Score=25.77 Aligned_cols=29 Identities=24% Similarity=-0.028 Sum_probs=23.9
Q ss_pred EeeeceecHHHHHHHhhCCCCeEEEcCCC
Q psy6888 20 LVLFLSVNNILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 20 ~~tG~~~t~e~a~~HL~~GAKkVIISaPs 48 (69)
+..|=.++.+++...+..||.+|++....
T Consensus 78 ~~~GGi~s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 78 TVGGGIKSIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 34667779999999999999999997653
No 42
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=53.12 E-value=13 Score=22.00 Aligned_cols=21 Identities=24% Similarity=0.592 Sum_probs=14.9
Q ss_pred EEcCCCCC-C-CeEEecCCCCCC
Q psy6888 43 IISAPSAD-A-PMFVCGVNLDKF 63 (69)
Q Consensus 43 IISaPs~d-~-pt~V~GVN~~~y 63 (69)
++|+|++| . |.+++-..+++|
T Consensus 2 vvt~~s~DT~~p~l~l~~d~~rY 24 (63)
T PF13691_consen 2 VVTTPSADTSGPSLLLFFDSRRY 24 (63)
T ss_pred eeecCCCCCCCCEEEEEeCCceE
Confidence 57899887 3 677776666555
No 43
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=52.57 E-value=16 Score=28.99 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=25.0
Q ss_pred eeeEeeeceecHHHHHHHhhCCCCeEE--EcCCCCCCCeEEecCC
Q psy6888 17 LIFLVLFLSVNNILQTAHLAGGAKKVI--ISAPSADAPMFVCGVN 59 (69)
Q Consensus 17 ~~~~~tG~~~t~e~a~~HL~~GAKkVI--ISaPs~d~pt~V~GVN 59 (69)
|.++.||.. .++.++.-.++|||+|- +++|+---|. .||+.
T Consensus 355 DDsittGtT-l~~~~~~L~~aGA~eV~v~~~sPpi~~pc-~yGid 397 (475)
T PRK07631 355 DDSIVRGTT-SRRIVTMLREAGATEVHVRISSPPITHPC-FYGID 397 (475)
T ss_pred eeeeccHHH-HHHHHHHHHHcCCCEEEEEEeCCCccCCc-ccCCC
Confidence 444458876 34556666679999876 5666532332 36765
No 44
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=52.26 E-value=23 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.060 Sum_probs=20.9
Q ss_pred eeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
-|=.++.|+++.-|+.||.||++.+
T Consensus 81 gGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 81 SGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred cCCCCCHHHHHHHHHCCCCEEEECc
Confidence 5667788999999999999988855
No 45
>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....
Probab=51.79 E-value=17 Score=24.31 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=34.5
Q ss_pred cccccccceeeEeeeceecHHHHHHHhhCCCCeEEEcCCC-------------------CCCCeEEecCCCCCCCCC
Q psy6888 9 IKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPS-------------------ADAPMFVCGVNLDKFEWK 66 (69)
Q Consensus 9 i~~t~~~~~~~~~tG~~~t~e~a~~HL~~GAKkVIISaPs-------------------~d~pt~V~GVN~~~y~~~ 66 (69)
++|+.-++..+.-+|+-...=...+-++.+|+.|.+++.. .+.+++++..|.+.+..+
T Consensus 56 ~~w~~~~i~~~~~~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~~~~~gY~~~l~~~~~~~~~~iLA~~~nG~pL~~~ 132 (169)
T PF00174_consen 56 FPWSAGAIGNAEWTGVPLSDLLEKAGIKPDAKYVVFTGADGYPMTHDGYSVSLPLEDALEEDVILAYEMNGEPLPPE 132 (169)
T ss_dssp HHCCSTSEEEEEEEEEEHHHHHHHHTB-TT-EEEEEEESCETTCTTSSEEEEEEHHHHHSTCSEEEEEETTEE--GG
T ss_pred ccccccceeeeeeEEEcHHHHHHHcCCCCCccEEEEEEcCCCcccCCCeEEEEEHHHhhcCCeEEEEccCCcccccc
Confidence 4566555556666888755433333334568888888754 125788888888777554
No 46
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=48.91 E-value=19 Score=28.53 Aligned_cols=41 Identities=27% Similarity=0.171 Sum_probs=24.5
Q ss_pred eeeEeeeceecHHHHHHHhhCCCCeEE--EcCCCCCCCeEEecCC
Q psy6888 17 LIFLVLFLSVNNILQTAHLAGGAKKVI--ISAPSADAPMFVCGVN 59 (69)
Q Consensus 17 ~~~~~tG~~~t~e~a~~HL~~GAKkVI--ISaPs~d~pt~V~GVN 59 (69)
|.+++||.. .++.++.-.++|||+|- ||+|+---|. .||++
T Consensus 363 DDsittGtT-l~~~~~~L~~aGak~V~~ri~sPpi~~pc-~yGid 405 (474)
T PRK06388 363 DDSIVRGNT-MRFIVKIMRKYGAKEVHVRIGSPHIIAPC-YFGVD 405 (474)
T ss_pred eCeECcHHH-HHHHHHHHHHcCCCEEEEEeCCCCccCCc-ccCCC
Confidence 334448876 33455666678999876 5667532332 36765
No 47
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=46.63 E-value=33 Score=23.32 Aligned_cols=29 Identities=24% Similarity=0.040 Sum_probs=23.3
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
++..|-.++.++++.-++.||.+|++.+.
T Consensus 77 v~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 77 VQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred EEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 34466778999999999999999998664
No 48
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.96 E-value=32 Score=23.58 Aligned_cols=25 Identities=16% Similarity=-0.049 Sum_probs=20.3
Q ss_pred eeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
-|=.++.+.++.-+++||.+|++.+
T Consensus 82 ~GGi~~~~~~~~~~~~Ga~~v~iGs 106 (241)
T PRK13585 82 GGGIRSAEDAASLLDLGVDRVILGT 106 (241)
T ss_pred cCCcCCHHHHHHHHHcCCCEEEECh
Confidence 5556688888888899999998865
No 49
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=43.33 E-value=44 Score=24.80 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=37.1
Q ss_pred cccccccceeeEeeeceecHHHHHHHhhCCCCeEEEcCCC--------------------CCCCeEEecCCCCCCCCCC
Q psy6888 9 IKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPS--------------------ADAPMFVCGVNLDKFEWKE 67 (69)
Q Consensus 9 i~~t~~~~~~~~~tG~~~t~e~a~~HL~~GAKkVIISaPs--------------------~d~pt~V~GVN~~~y~~~~ 67 (69)
.+|+.-.+-.+.-+|+-...=...+-++.+|+.|.+.+.- .+++++++..|.+.+.++|
T Consensus 66 ~~W~~g~i~~~~w~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~~~~~~~Y~~sipl~~~~~~~~iLAy~mNGepL~~~h 144 (317)
T cd02110 66 AQWGHGAVGNARWTGVPLKDLLEEAGVKPGAKHVLFEGADVPPGEKAADYTRSVPLSKALDDDALLAYEMNGEPLPPDH 144 (317)
T ss_pred CccccCceeecEEECcCHHHHHHHhCCCCCCcEEEEEccCcccccCCCCeEEEEEHHHhcCCCcEEEehhcCccCCHHh
Confidence 6677665556666887754322223334467788876641 1257999999998886554
No 50
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=41.38 E-value=37 Score=25.06 Aligned_cols=28 Identities=25% Similarity=0.035 Sum_probs=23.6
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcCCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISaPs 48 (69)
+-|=-++.+.++..|++|++|||+.+-.
T Consensus 80 vGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 80 VGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred eeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 3677789999999999999999996543
No 51
>PRK12404 stage V sporulation protein AD; Provisional
Probab=41.32 E-value=20 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=28.7
Q ss_pred ccccccccceeeEeeeceecHHHHHHHhhCC-CCeEEEcCCC
Q psy6888 8 EIKSTSFKFLIFLVLFLSVNNILQTAHLAGG-AKKVIISAPS 48 (69)
Q Consensus 8 ~i~~t~~~~~~~~~tG~~~t~e~a~~HL~~G-AKkVIISaPs 48 (69)
.||+ +|++.+|+||.. ....+...+++| +++|+.-+.|
T Consensus 99 GIP~--~gV~gACSTg~e-AL~lAa~~VaSG~Ad~VLavtsS 137 (334)
T PRK12404 99 GIPY--LGLFGACSTSME-GLALAALIVNSGGAKYVLTGASS 137 (334)
T ss_pred CCCc--cceeecCHHHHH-HHHHHHHHHHcCCCCEEEEEeCc
Confidence 3666 899999999888 667788889987 6676664443
No 52
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.00 E-value=34 Score=23.95 Aligned_cols=28 Identities=25% Similarity=-0.022 Sum_probs=23.1
Q ss_pred EeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 20 LVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 20 ~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
...|=.++.+.++..+..||.+|++.+.
T Consensus 78 ~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 78 TVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred EeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 3466777899999999999999999775
No 53
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=40.09 E-value=49 Score=22.53 Aligned_cols=26 Identities=23% Similarity=-0.068 Sum_probs=20.8
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
.-|-.++.++++.-++.||.+||+.+
T Consensus 77 ~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 77 VGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 35666788889888899999988864
No 54
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=40.08 E-value=28 Score=28.07 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=16.5
Q ss_pred HHHHHHhhCCCCeEEEcC
Q psy6888 29 ILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 29 e~a~~HL~~GAKkVIISa 46 (69)
|.++..|++||.||+|.+
T Consensus 338 e~~~~~l~~GadkV~i~s 355 (538)
T PLN02617 338 EVASEYFRSGADKISIGS 355 (538)
T ss_pred HHHHHHHHcCCCEEEECh
Confidence 779999999999999976
No 55
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=39.88 E-value=24 Score=27.87 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=22.0
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEE--cCCCCCCCeEEecCC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVII--SAPSADAPMFVCGVN 59 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVII--SaPs~d~pt~V~GVN 59 (69)
++.||.. .++.++.-.++|||+|.+ ++|+--.|. .||+.
T Consensus 367 vitTGaT-l~~~~~~L~~aGA~~V~v~v~ap~i~~pc-~ygid 407 (501)
T PRK09246 367 SIVRGTT-SEQIVQMAREAGAKKVYFASAAPPVRFPN-VYGID 407 (501)
T ss_pred cccccHH-HHHHHHHHHHcCCCEEEEEEEccccccCc-ccccC
Confidence 3338876 344555556789999765 444322232 35664
No 56
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=39.42 E-value=55 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=30.5
Q ss_pred eeEeeecee--cHHHHHHHhhC-CCCeEEEcCCCCCCCeEEecCCC
Q psy6888 18 IFLVLFLSV--NNILQTAHLAG-GAKKVIISAPSADAPMFVCGVNL 60 (69)
Q Consensus 18 ~~~~tG~~~--t~e~a~~HL~~-GAKkVIISaPs~d~pt~V~GVN~ 60 (69)
.++.||.+. +++.+...++. |++ +.++-++.+..+|+|-|.
T Consensus 589 ~~v~TG~l~~~~R~~~~~~i~~~G~~--v~~sVs~kt~~lv~G~~~ 632 (652)
T TIGR00575 589 TFVLTGTLSQMSRDEAKELLENLGGK--VASSVSKKTDYVIAGEKA 632 (652)
T ss_pred EEEEeccCCCCCHHHHHHHHHHcCCE--EeCCcCCCccEEEECCCC
Confidence 566799986 67888877764 665 456667778889999764
No 57
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways. The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....
Probab=39.25 E-value=17 Score=21.20 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=13.2
Q ss_pred cHHHHHHHhhCC-CCeEEEcC
Q psy6888 27 NNILQTAHLAGG-AKKVIISA 46 (69)
Q Consensus 27 t~e~a~~HL~~G-AKkVIISa 46 (69)
..+.+..++++| +|+|++-+
T Consensus 13 al~~A~~~i~~g~~~~~Lvv~ 33 (80)
T PF08545_consen 13 ALDVAAALIASGRAKNALVVG 33 (80)
T ss_dssp HHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHhhccCCEEEEEe
Confidence 556777788776 77777643
No 58
>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition. This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=39.07 E-value=8.8 Score=26.86 Aligned_cols=31 Identities=6% Similarity=-0.113 Sum_probs=23.5
Q ss_pred CcceeecccccccccceeeEe--------eeceecHHHH
Q psy6888 1 MEFLVRDEIKSTSFKFLIFLV--------LFLSVNNILQ 31 (69)
Q Consensus 1 ~~~~~~~~i~~t~~~~~~~~~--------tG~~~t~e~a 31 (69)
+.||-..+||||++.+|.++= +|.+.|.+.+
T Consensus 231 ~~fl~~~~vp~~NN~aEraiR~~~~~RK~~~~~~s~~Ga 269 (271)
T PF03050_consen 231 FTFLEDPGVPLDNNAAERAIRPVVLGRKNSLFFRSEEGA 269 (271)
T ss_pred heeeeeccccccchHhhcccccccccceeecCCCCcccc
Confidence 358889999999999999883 5666555443
No 59
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=37.31 E-value=34 Score=27.33 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=22.8
Q ss_pred eeEeeeceecHHHHHHHhhCCCCeEE--EcCCCCCCCeEEecCC
Q psy6888 18 IFLVLFLSVNNILQTAHLAGGAKKVI--ISAPSADAPMFVCGVN 59 (69)
Q Consensus 18 ~~~~tG~~~t~e~a~~HL~~GAKkVI--ISaPs~d~pt~V~GVN 59 (69)
.++.||.. .++.++.-.++|||+|- |++|+--.|. .||++
T Consensus 385 DvIttGtT-l~~~~~~Lr~aGAkeV~~~i~sPp~~~pc-~ygid 426 (500)
T PRK07349 385 DSIVRGTT-SRKIVKALRDAGATEVHMRISSPPVTHPC-FYGID 426 (500)
T ss_pred ceeCCcHH-HHHHHHHHHHhCCeEEEEEeCCCcccccc-cccCC
Confidence 33348875 34444455568999876 4666432332 36764
No 60
>PHA02031 putative DnaG-like primase
Probab=37.28 E-value=44 Score=25.01 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=28.0
Q ss_pred ccceeeE-eeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 14 FKFLIFL-VLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 14 ~~~~~~~-~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
.|+.++. ..|+..|.+.++.-.+.++++||+.-=
T Consensus 180 aG~~naVA~LGTALT~~q~~~L~r~~~~~Vil~fD 214 (266)
T PHA02031 180 KPEVFAVALLGTRLRDRLAAILLQQTCPRVLIFLD 214 (266)
T ss_pred cCcceEEECCcccCCHHHHHHHHhcCCCCEEEEeC
Confidence 6898888 599999999988766667999998643
No 61
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=37.16 E-value=24 Score=28.09 Aligned_cols=36 Identities=22% Similarity=0.129 Sum_probs=27.7
Q ss_pred cccccccceeeE-eeeceecHHHHHHHhhCCCCeEEEc
Q psy6888 9 IKSTSFKFLIFL-VLFLSVNNILQTAHLAGGAKKVIIS 45 (69)
Q Consensus 9 i~~t~~~~~~~~-~tG~~~t~e~a~~HL~~GAKkVIIS 45 (69)
|-..++||.+++ +.|+..|.+.++. |..+.++||++
T Consensus 260 iaL~~aGi~naVA~lGTalt~ehi~~-L~r~~~~vil~ 296 (568)
T COG0358 260 IALHKAGIKNAVASLGTALTEEHIKL-LSRGKKKVILC 296 (568)
T ss_pred HHHHHcCCcceeecccccCCHHHHHH-HHhcCCCEEEE
Confidence 345689999998 5999988887764 45578889885
No 62
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.58 E-value=57 Score=23.01 Aligned_cols=29 Identities=17% Similarity=-0.098 Sum_probs=23.2
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
+...|=.++.++++.-++.||.+||+.+.
T Consensus 76 v~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 76 VQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred EEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 33467778999999999999999998543
No 63
>KOG3055|consensus
Probab=36.31 E-value=31 Score=25.64 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.9
Q ss_pred cHHHHHHHhhCCCCeEEEcC
Q psy6888 27 NNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 27 t~e~a~~HL~~GAKkVIISa 46 (69)
+.+.+...|+.||.|||+|.
T Consensus 92 N~~Nc~~wl~egASkVIVTS 111 (263)
T KOG3055|consen 92 NSENCMSWLEEGASKVIVTS 111 (263)
T ss_pred ChHHHHHHHHhcCceEEEEE
Confidence 45678889999999999975
No 64
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.03 E-value=34 Score=25.05 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=14.4
Q ss_pred HHHHHHhhCCCCeEEEcC
Q psy6888 29 ILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 29 e~a~~HL~~GAKkVIISa 46 (69)
+.++..|++||.+|||=+
T Consensus 138 ~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 138 KLINKDLEAGADYVIIEG 155 (237)
T ss_pred HHHHHHHHCCCcEEEEee
Confidence 345677999999999965
No 65
>KOG2697|consensus
Probab=33.85 E-value=38 Score=26.83 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=18.0
Q ss_pred CCCCeEEEcCCC-CC---CCeEEecCC
Q psy6888 37 GGAKKVIISAPS-AD---APMFVCGVN 59 (69)
Q Consensus 37 ~GAKkVIISaPs-~d---~pt~V~GVN 59 (69)
+|+|.|++++|+ +| .|-+||-.|
T Consensus 155 AgCk~vV~atPprKDG~v~pEvvY~A~ 181 (446)
T KOG2697|consen 155 AGCKTVVLATPPRKDGSVCPEVVYCAK 181 (446)
T ss_pred cCCceEEEecCCCcCCccCcceeeehh
Confidence 799999999997 45 478888544
No 66
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=33.24 E-value=35 Score=24.77 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=26.8
Q ss_pred cccccccceeeE-eeeceecHHHHHHHhhC-CCCeEEEcC
Q psy6888 9 IKSTSFKFLIFL-VLFLSVNNILQTAHLAG-GAKKVIISA 46 (69)
Q Consensus 9 i~~t~~~~~~~~-~tG~~~t~e~a~~HL~~-GAKkVIISa 46 (69)
|-+.+.|+.+++ +.|...|.++++ .|+. -+++|+++-
T Consensus 123 Isl~qaGi~naVAslGTALT~~q~~-lLkr~~~~~Iil~~ 161 (218)
T TIGR00646 123 LAFRKAGILNCLPLCGLTISDKQMK-FFKQKKIEKIFICF 161 (218)
T ss_pred HHHHHCCCCeEEEcCchHhHHHHHH-HHhccCCCEEEEEe
Confidence 345578998877 599998888776 4555 478898854
No 67
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=32.75 E-value=46 Score=22.39 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=14.6
Q ss_pred eeceecHHHHHHHhhCCCCeEEE
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVII 44 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVII 44 (69)
||.. -.+.++.-.++||++|-+
T Consensus 164 TGaT-l~~~~~~L~~~Ga~~V~~ 185 (190)
T TIGR00201 164 TGAT-LHEIARLLLELGAASVQV 185 (190)
T ss_pred cHHH-HHHHHHHHHHcCCCEEEE
Confidence 7765 344555566789998754
No 68
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=32.02 E-value=79 Score=26.35 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=30.8
Q ss_pred eeeEeeecee--cHHHHHHHhhC-CCCeEEEcCCCCCCCeEEecCCCC
Q psy6888 17 LIFLVLFLSV--NNILQTAHLAG-GAKKVIISAPSADAPMFVCGVNLD 61 (69)
Q Consensus 17 ~~~~~tG~~~--t~e~a~~HL~~-GAKkVIISaPs~d~pt~V~GVN~~ 61 (69)
..++.||.+. +++.+...++. |++ +.+..++.+..+|+|-|..
T Consensus 613 ~~~v~TG~l~~~~R~~~~~~i~~~Gg~--v~~sVs~kt~~Lv~G~~~g 658 (689)
T PRK14351 613 LTFVFTGSLSGYTRSEAQELVEAHGGN--ATGSVSGNTDYLVVGENPG 658 (689)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHcCCE--EcCCcCCCccEEEEcCCCC
Confidence 4567799995 67777777764 655 4566677788899997643
No 69
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=31.08 E-value=87 Score=26.06 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=28.9
Q ss_pred eeEeeecee--cHHHHHHHhhC-CCCeEEEcCCCCCCCeEEecCC
Q psy6888 18 IFLVLFLSV--NNILQTAHLAG-GAKKVIISAPSADAPMFVCGVN 59 (69)
Q Consensus 18 ~~~~tG~~~--t~e~a~~HL~~-GAKkVIISaPs~d~pt~V~GVN 59 (69)
.|++||.|. +|+.+...+++ |+| +.|+=|+.+..+|.|-|
T Consensus 598 tfV~TG~l~~~~R~e~~~lie~~Ggk--v~ssVSkktd~LV~G~~ 640 (669)
T PRK14350 598 KFCITGSFNGYSRSVLIDKLTKKGAI--FNTCVTKYLDFLLVGEK 640 (669)
T ss_pred EEEEecccCCCCHHHHHHHHHHcCCE--EeccccCCCcEEEECCC
Confidence 567799985 68888888874 776 34555667778888854
No 70
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=31.04 E-value=76 Score=22.21 Aligned_cols=28 Identities=7% Similarity=-0.165 Sum_probs=22.1
Q ss_pred EeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 20 LVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 20 ~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
+..|=.++.+++..-++.||.+||+.+.
T Consensus 193 i~~GGi~s~edi~~l~~~G~~~vivGsa 220 (233)
T cd04723 193 IAAGGVRSVEDLELLKKLGASGALVASA 220 (233)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEehH
Confidence 3355566889999999999999999643
No 71
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=30.06 E-value=60 Score=21.42 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=23.1
Q ss_pred cceeeEeeeceecHHHHHHHhhC--CCCeEEEcCCCC
Q psy6888 15 KFLIFLVLFLSVNNILQTAHLAG--GAKKVIISAPSA 49 (69)
Q Consensus 15 ~~~~~~~tG~~~t~e~a~~HL~~--GAKkVIISaPs~ 49 (69)
..+.+++||...-......-|+. -++.+++..||.
T Consensus 62 ~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 62 WADVVIITGSTLVNGTIDDILELARNAREVILYGPSA 98 (147)
T ss_dssp G-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCG
T ss_pred cCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCc
Confidence 46788888877655555544432 378889989875
No 72
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=29.94 E-value=37 Score=26.43 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=14.1
Q ss_pred eeceecHHHHHHHhhCCCCeEEE
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVII 44 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVII 44 (69)
||.. -.+.++.-.++|||+|.+
T Consensus 352 TG~T-l~~a~~~Lr~aGA~~V~v 373 (445)
T PRK08525 352 RGTT-SKKIVSLLRAAGAKEIHL 373 (445)
T ss_pred cHHH-HHHHHHHHHhcCCCEEEE
Confidence 8875 333444455679999765
No 73
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=29.45 E-value=59 Score=28.02 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=23.4
Q ss_pred cccceeeEeeeceecHHH---HHHHhhCCCCeEEEcCC
Q psy6888 13 SFKFLIFLVLFLSVNNIL---QTAHLAGGAKKVIISAP 47 (69)
Q Consensus 13 ~~~~~~~~~tG~~~t~e~---a~~HL~~GAKkVIISaP 47 (69)
.|+=+++++||.-...-. ++.-|++||+ ||.|+.
T Consensus 393 ~y~d~valVTGA~~gSIaa~Vv~~LL~gGAt-VI~TTS 429 (866)
T COG4982 393 TYGDKVALVTGASKGSIAAAVVARLLAGGAT-VIATTS 429 (866)
T ss_pred CcccceEEEecCCCcchHHHHHHHHHhCCcE-EEEEcc
Confidence 356679999998866533 3456777776 777664
No 74
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=29.30 E-value=71 Score=19.68 Aligned_cols=31 Identities=29% Similarity=0.241 Sum_probs=20.0
Q ss_pred eeEeeeceecH--HHHHHHhhCCCCeEEEcCCC
Q psy6888 18 IFLVLFLSVNN--ILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 18 ~~~~tG~~~t~--e~a~~HL~~GAKkVIISaPs 48 (69)
.+++||.-... +-++..++.|+++|++...+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 45666655332 44566667789998887654
No 75
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=29.06 E-value=55 Score=24.98 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=26.8
Q ss_pred ecccccccccce-eeEe-eeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 6 RDEIKSTSFKFL-IFLV-LFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 6 ~~~i~~t~~~~~-~~~~-tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
||+.-.-.+||+ ..+. |+.- ..+.+..-+++|.|||||.+
T Consensus 33 ~d~~~l~~lgi~g~~i~~s~~p-~~~cad~ii~~gi~rVVi~~ 74 (360)
T PRK14719 33 NDILSLKNLKINANFITVSNTP-VFQIADDLIAENISEVILLT 74 (360)
T ss_pred hHHHHHHHcCCCCcEEEEeCCc-hHHHHHHHHHcCCCEEEEEE
Confidence 444555578885 4443 5533 33467777889999999987
No 76
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=28.66 E-value=56 Score=25.39 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEE--EcCCCCCCCeEEecC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVI--ISAPSADAPMFVCGV 58 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVI--ISaPs~d~pt~V~GV 58 (69)
++.||.. .++.++.-.++|||+|- +++|+--.|. .||+
T Consensus 347 ~ittG~T-~~~~~~~l~~~ga~~v~~~~~spp~~~pc-~yg~ 386 (442)
T TIGR01134 347 SIVRGTT-SRQIVKMLRDAGAKEVHVRIASPPIRYPC-YYGI 386 (442)
T ss_pred cccccHH-HHHHHHHHHHcCCcEEEEEEccCCccCCc-cccc
Confidence 3348875 34445555568999865 4555422332 3677
No 77
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=28.53 E-value=41 Score=26.44 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=15.9
Q ss_pred eeeceecHHHHHHHhhCCCCeEEE--cCCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVII--SAPS 48 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVII--SaPs 48 (69)
.||.. .++.++.-.++|||+|.+ |+|.
T Consensus 364 tTGtT-l~~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 364 VRGTT-SKRLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred CchHH-HHHHHHHHHHcCCCEEEEEEECCC
Confidence 38875 333344444689998764 5553
No 78
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=28.30 E-value=31 Score=25.88 Aligned_cols=27 Identities=22% Similarity=-0.033 Sum_probs=22.5
Q ss_pred eeceecHHHHHHHhhCCCCeEEEcCCC
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVIISaPs 48 (69)
-|=-++.++.+.-|.+||.||-|-+|.
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSINsaA 106 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSINSAA 106 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeChhH
Confidence 466679999999999999999886553
No 79
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=28.30 E-value=83 Score=21.67 Aligned_cols=27 Identities=26% Similarity=-0.017 Sum_probs=21.5
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
..|=.++.+.++..++.||.+|++...
T Consensus 76 ~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 76 VGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred EeCCCCCHHHHHHHHHcCCceEEECch
Confidence 366666888899999889999988654
No 80
>PRK04966 hypothetical protein; Provisional
Probab=27.87 E-value=39 Score=20.68 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=23.5
Q ss_pred cceeecccccccccceeeEeeeceecHHHHHHHhhCCCCeEEEc
Q psy6888 2 EFLVRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIIS 45 (69)
Q Consensus 2 ~~~~~~~i~~t~~~~~~~~~tG~~~t~e~a~~HL~~GAKkVIIS 45 (69)
||+.| ++|.||-.- ...-...+.+...|++|--.++.|
T Consensus 19 efv~R---eGTdyG~~E---~sl~~kv~qv~~qL~~G~~viv~s 56 (72)
T PRK04966 19 SFVLR---EGTDYGEHE---RSLEQKVADVKRQLQSGEAVLVWS 56 (72)
T ss_pred HHHhc---cCccCCccc---ccHHHHHHHHHHHHHcCCEEEEEC
Confidence 57778 688888321 222334467778888886555444
No 81
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=27.49 E-value=89 Score=24.75 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=19.2
Q ss_pred eeceecHHHHHHHh-hCCCCeEEEcCCCCC-CCeEEecC
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVIISAPSAD-APMFVCGV 58 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVIISaPs~d-~pt~V~GV 58 (69)
||... ..+...| ++|||+|.+...++. ..-..+|+
T Consensus 372 tG~Tl--~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gi 408 (479)
T PRK09123 372 RGTTS--RKIVQMLRDAGAKEVHLRIASPPITHPCFYGI 408 (479)
T ss_pred chHHH--HHHHHHHHHcCCCEEEEEEcCCCCccceeecC
Confidence 88653 3344444 589999876553332 22334564
No 82
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=27.28 E-value=45 Score=24.66 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=32.4
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC---CCCCeEEecCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS---ADAPMFVCGVNLDKFE 64 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs---~d~pt~V~GVN~~~y~ 64 (69)
+++.|.. ++--.+.+.+..-.++|++-+.+|+-. ++.|.++.++|++.|.
T Consensus 73 ~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~ 126 (341)
T TIGR00978 73 DVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLE 126 (341)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHh
Confidence 5666664 544445555555567788766666653 3468999999987564
No 83
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=27.03 E-value=45 Score=24.11 Aligned_cols=33 Identities=24% Similarity=0.105 Sum_probs=18.4
Q ss_pred ceecHHHHHHHhhCCCCeEE-EcCCCCCCCeEEe
Q psy6888 24 LSVNNILQTAHLAGGAKKVI-ISAPSADAPMFVC 56 (69)
Q Consensus 24 ~~~t~e~a~~HL~~GAKkVI-ISaPs~d~pt~V~ 56 (69)
.|.+.|.|..|.++|+.-.= -|......|-+|+
T Consensus 6 qwls~eeA~~hc~~G~~iW~wAS~d~g~ePDVVl 39 (203)
T PF09363_consen 6 QWLSMEEARAHCAAGAGIWDWASTDQGEEPDVVL 39 (203)
T ss_dssp E-S-HHHHHHHHHHSEEE-CCC-SSSTTT-SEEE
T ss_pred ccCCHHHHHHHHHcCCeEEEeccCCCCCCCCEEE
Confidence 57899999999999986211 2322223565555
No 84
>PF11183 PmrD: Polymyxin resistance protein PmrD; InterPro: IPR020146 The Salmonella PmrA/PmrB two-component system is required for resistance to the cationic peptide antibiotic olymyxin B, resistance to Fe(3+)-mediated killing, growth in soil, virulence in mice, and infection of chicken macrophages. PmrA-activated genes encode periplasmic and integral membrane proteins as well as cytoplasmic products mediating the modification of the lipopolysaccharide, suggesting a role for the PmrA/PmrB system in remodeling of the Gram-negative envelope. The PmrA/PmrB two-component system of Salmonella enterica is activated by Fe(3+), which is sensed by the PmrB protein, and by low Mg(2+), which is sensed by the PhoQ protein. The low Mg(2+) activation requires pmrD, a PhoPPhoQ-activated gene that activates the response regulator PmrA at a posttranscriptional level. However, under conditions that activate the PmrA protein independently of pmrD, such as exposure to Fe3, lower levels of pmrD transcription occur. It has been demonstrated that PmrA binds to the pmrD promoter, suppressing transcription. Negative regulation of the PhoP/PhoQ-activated pmrD gene by the PmrA/ PmrB system closes a regulatory circuit designed to maintain proper cellular levels of activated PmrA protein, and constitutes a singular example of a multicomponent feedback loop []. ; PDB: 2RQX_A 2JSO_A.
Probab=26.63 E-value=62 Score=20.41 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=15.6
Q ss_pred CcceeecccccccccceeeEee
Q psy6888 1 MEFLVRDEIKSTSFKFLIFLVL 22 (69)
Q Consensus 1 ~~~~~~~~i~~t~~~~~~~~~t 22 (69)
||++|.+-+-.++.+..+++.+
T Consensus 1 MEW~Vkk~~~~~~~~~~~l~l~ 22 (82)
T PF11183_consen 1 MEWWVKKSIFNKQTNCHVLLLC 22 (82)
T ss_dssp --EEEEEEE-SSTTSEEEEEEE
T ss_pred CcEEEEEeEEcCCCCEEEEEEe
Confidence 8999999999998886666665
No 85
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=26.45 E-value=1e+02 Score=22.52 Aligned_cols=42 Identities=7% Similarity=-0.062 Sum_probs=29.1
Q ss_pred eeeEeeecee--cHHHHHHHhhC-CCCeEEEcCCCCCCCeEEecCCC
Q psy6888 17 LIFLVLFLSV--NNILQTAHLAG-GAKKVIISAPSADAPMFVCGVNL 60 (69)
Q Consensus 17 ~~~~~tG~~~--t~e~a~~HL~~-GAKkVIISaPs~d~pt~V~GVN~ 60 (69)
..++.||.|. +++.+...++. |++ +.++-++.+..+|.|-.+
T Consensus 224 ~~~vfTG~l~~~~R~~~~~~~~~~Gg~--v~~sVs~~t~~lV~G~~~ 268 (309)
T PRK06195 224 EVVVFTGGLASMTRDEAMILVRRLGGT--VGSSVTKKTTYLVTNTKD 268 (309)
T ss_pred CEEEEccccCCCCHHHHHHHHHHhCCE--ecCCcccCceEEEECCCc
Confidence 3566799994 77788777753 654 445556677788988653
No 86
>KOG0572|consensus
Probab=26.40 E-value=1.1e+02 Score=24.75 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=21.6
Q ss_pred eeceecHHHHHHHhhCCCCeEEEcC--CCCCCCeEEecCCC
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVIISA--PSADAPMFVCGVNL 60 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVIISa--Ps~d~pt~V~GVN~ 60 (69)
-|.. +++--+.--++|||.|-+-. |+-..| ..||+|-
T Consensus 368 RGtT-s~~IVkmlreaGAkeVh~riAsPpi~~p-c~yGIdi 406 (474)
T KOG0572|consen 368 RGTT-SSPIVKMLREAGAKEVHIRIASPPIKYP-CYYGIDI 406 (474)
T ss_pred ccCc-hHHHHHHHHHcCCcEEEEEecCCccccc-ceeecCC
Confidence 5543 33334444469999998743 332233 4689984
No 87
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.26 E-value=96 Score=22.02 Aligned_cols=26 Identities=15% Similarity=-0.141 Sum_probs=20.6
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
..|-.++.+++...+..|+.+|+|.+
T Consensus 79 ~gGGi~s~~d~~~l~~~G~~~vvigs 104 (258)
T PRK01033 79 YGGGIKTLEQAKKIFSLGVEKVSINT 104 (258)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEEECh
Confidence 34566688888888888999999864
No 88
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=25.99 E-value=63 Score=14.51 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=11.0
Q ss_pred ceecHHHHHHHhhC
Q psy6888 24 LSVNNILQTAHLAG 37 (69)
Q Consensus 24 ~~~t~e~a~~HL~~ 37 (69)
.|.+...++.|+++
T Consensus 9 ~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 9 SFSSENSLRQHLRS 22 (25)
T ss_dssp EESSHHHHHHHHTT
T ss_pred CcCCHHHHHHHHCc
Confidence 36788889999875
No 89
>KOG1803|consensus
Probab=25.97 E-value=73 Score=26.84 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=19.5
Q ss_pred eeceecHHH-HHHHhhCCCCeEEEcCCC
Q psy6888 22 LFLSVNNIL-QTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 22 tG~~~t~e~-a~~HL~~GAKkVIISaPs 48 (69)
||+..|.-. -.+-++.| |||+++||+
T Consensus 212 TGKT~TlvEiI~qlvk~~-k~VLVcaPS 238 (649)
T KOG1803|consen 212 TGKTRTLVEIISQLVKQK-KRVLVCAPS 238 (649)
T ss_pred CCceeeHHHHHHHHHHcC-CeEEEEcCc
Confidence 888877644 34555666 999999998
No 90
>PF15587 Imm48: Immunity protein 48
Probab=25.93 E-value=43 Score=23.42 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=16.3
Q ss_pred EcCCCCCCCeEEecCCCCCCC
Q psy6888 44 ISAPSADAPMFVCGVNLDKFE 64 (69)
Q Consensus 44 ISaPs~d~pt~V~GVN~~~y~ 64 (69)
||-|-++.-.+++|||.+++.
T Consensus 82 I~ipIP~~~e~~wGv~~~k~a 102 (155)
T PF15587_consen 82 ISIPIPNSKEARWGVNKKKEA 102 (155)
T ss_pred EEEecCCccceeecccccccc
Confidence 666766667899999988664
No 91
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=25.67 E-value=58 Score=25.92 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=21.9
Q ss_pred eeeEeeeceecHHHHHHHhhCCCCeEE--EcCCCCCCCeEEecCC
Q psy6888 17 LIFLVLFLSVNNILQTAHLAGGAKKVI--ISAPSADAPMFVCGVN 59 (69)
Q Consensus 17 ~~~~~tG~~~t~e~a~~HL~~GAKkVI--ISaPs~d~pt~V~GVN 59 (69)
|.++.||.. ..+.++.-.++||++|. +++|.--.|. .||+.
T Consensus 357 DDvittG~T-~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c-~ygid 399 (484)
T PRK07272 357 DDSIVRGTT-SRRIVQLLKEAGAKEVHVAIASPELKYPC-FYGID 399 (484)
T ss_pred ccccCchHH-HHHHHHHHHhcCCcEEEEEEeCCccccCh-hhhcc
Confidence 334448876 33445555568999865 4555422222 25654
No 92
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=25.22 E-value=1.1e+02 Score=25.82 Aligned_cols=42 Identities=26% Similarity=0.197 Sum_probs=29.2
Q ss_pred eeEeeecee--cHHHHHHHhhC-CCCeEEEcCCCCCCCeEEecCCCC
Q psy6888 18 IFLVLFLSV--NNILQTAHLAG-GAKKVIISAPSADAPMFVCGVNLD 61 (69)
Q Consensus 18 ~~~~tG~~~--t~e~a~~HL~~-GAKkVIISaPs~d~pt~V~GVN~~ 61 (69)
.++.||.+. +|+.+..-|++ ||| | -++-|+.+.-+|.|-|.-
T Consensus 599 t~V~TGtL~~~sR~eak~~le~lGak-v-~~SVSkktD~vvaG~~aG 643 (667)
T COG0272 599 TFVLTGTLEGMSRDEAKALLEALGAK-V-SGSVSKKTDYVVAGENAG 643 (667)
T ss_pred EEEEeccCCCCCHHHHHHHHHHcCCE-E-eceecccccEEEEcCCCC
Confidence 455699987 67788777764 877 3 333356778889998863
No 93
>PLN02440 amidophosphoribosyltransferase
Probab=24.85 E-value=72 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=13.4
Q ss_pred eeeceecHHHHHHHhhCCCCeEEE
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVII 44 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVII 44 (69)
.||.. .++.++.-.++||++|-+
T Consensus 351 ttGtT-l~~i~~~L~~aGa~~V~v 373 (479)
T PLN02440 351 VRGTT-SSKIVRMLREAGAKEVHM 373 (479)
T ss_pred CcHHH-HHHHHHHHHhcCCCEEEE
Confidence 38875 333333344579998654
No 94
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.50 E-value=51 Score=24.66 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=12.8
Q ss_pred eeceecHHHHHHHh-hCCCCeEEE
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVII 44 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVII 44 (69)
||.. ...+..+| ++||++|.+
T Consensus 230 TG~T--l~~aa~~Lk~~GA~~V~~ 251 (323)
T PRK02458 230 TGKT--FAEAAKIVEREGATEIYA 251 (323)
T ss_pred cHHH--HHHHHHHHHhCCCCcEEE
Confidence 7754 33444455 469998765
No 95
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=24.13 E-value=1.3e+02 Score=21.62 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=20.2
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEE
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVII 44 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVII 44 (69)
++--|.+.+.+++.+-|+.||--|++
T Consensus 147 vIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 147 VIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp EEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred EeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 44478999999999999999999987
No 96
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=23.87 E-value=47 Score=24.38 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=14.3
Q ss_pred eeceecHHHHHHHhh-CCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHLA-GGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL~-~GAKkVIISa 46 (69)
||. |...+...|+ .||++|.+.+
T Consensus 222 tG~--Tl~~a~~~l~~~ga~~v~~~~ 245 (308)
T TIGR01251 222 TGG--TIAKAAEILKSAGAKRVIAAA 245 (308)
T ss_pred CHH--HHHHHHHHHHhcCCCEEEEEE
Confidence 676 4444545554 5899887655
No 97
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=23.59 E-value=86 Score=24.78 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=16.1
Q ss_pred cHHHHHHHhhCCCCeEEEcC
Q psy6888 27 NNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 27 t~e~a~~HL~~GAKkVIISa 46 (69)
+-|.-..-|+.|||++||.-
T Consensus 114 tGeLI~~Ald~Ga~~IiiGi 133 (378)
T COG1929 114 TGELIKHALDAGAKHIIIGI 133 (378)
T ss_pred HHHHHHHHHhCCCcEEEEec
Confidence 66767777899999999953
No 98
>COG1556 Uncharacterized conserved protein [Function unknown]
Probab=23.31 E-value=1.2e+02 Score=22.08 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=18.3
Q ss_pred HHHHhhCCCCeE-EEcCCCC--CC-CeEEecCC
Q psy6888 31 QTAHLAGGAKKV-IISAPSA--DA-PMFVCGVN 59 (69)
Q Consensus 31 a~~HL~~GAKkV-IISaPs~--d~-pt~V~GVN 59 (69)
+.++.+.|-..+ +||.||. |. -..|+||-
T Consensus 173 l~~~~~~gPs~i~~IsGPS~TADIEl~~V~GvH 205 (218)
T COG1556 173 LRQKAKNGPSNINFISGPSRTADIELILVVGVH 205 (218)
T ss_pred HHHHhccCCcceEEeecCCcccceeeEEEEeec
Confidence 344445663333 4899985 53 37899984
No 99
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.81 E-value=1.5e+02 Score=20.06 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=20.4
Q ss_pred cceeeEe--eeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 15 KFLIFLV--LFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 15 ~~~~~~~--tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
++..... +.+| +.+.++...+.||+++++|-
T Consensus 36 ~~~i~~~~~~nv~-N~~s~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 36 DLKIIADYSLNVF-NSESARFLKELGASRITLSP 68 (233)
T ss_pred CCcEEEecCccCC-CHHHHHHHHHcCCCEEEECc
Confidence 3344443 6667 44566666678999999864
No 100
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=22.79 E-value=72 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=18.5
Q ss_pred eecHHHHHHHhhCCCCeEEEcCC
Q psy6888 25 SVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 25 ~~t~e~a~~HL~~GAKkVIISaP 47 (69)
|-.++-++..-++|||.||+.|-
T Consensus 54 wDP~eWar~fK~aGAKyvilvak 76 (430)
T COG3669 54 WDPREWARLFKEAGAKYVILVAK 76 (430)
T ss_pred CCHHHHHHHHHHcCCcEEEEeee
Confidence 45567888888999999998764
No 101
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=22.58 E-value=60 Score=25.55 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=28.7
Q ss_pred eeecccccc-c-----ccceeeEeeeceecHHHH---HHHhhCCCCeEEEc
Q psy6888 4 LVRDEIKST-S-----FKFLIFLVLFLSVNNILQ---TAHLAGGAKKVIIS 45 (69)
Q Consensus 4 ~~~~~i~~t-~-----~~~~~~~~tG~~~t~e~a---~~HL~~GAKkVIIS 45 (69)
.|++.|.|+ + .|=..+|+||..+....+ ...++.||+-++++
T Consensus 23 ~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~ 73 (398)
T PRK13656 23 NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVF 73 (398)
T ss_pred HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEe
Confidence 355666666 2 344589999998776555 33447899988776
No 102
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=22.37 E-value=1.4e+02 Score=21.39 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=22.4
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
.-|=.++.++++.-+++||.+||+.+-
T Consensus 180 vGGGIrs~e~a~~l~~aGAD~VVVGsa 206 (219)
T cd02812 180 VGGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 356677999999999999999998654
No 103
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=22.30 E-value=73 Score=24.61 Aligned_cols=50 Identities=26% Similarity=0.160 Sum_probs=34.9
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC-----CCCCeEEecCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS-----ADAPMFVCGVNLDKFE 64 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs-----~d~pt~V~GVN~~~y~ 64 (69)
++|+++. +|--.+.+-+....++|++.++|.--+ +|.|.+|-.||.+.+.
T Consensus 65 ~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~ 120 (369)
T PRK06598 65 KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVID 120 (369)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHH
Confidence 5778776 666666666666667888766665544 2478999999987654
No 104
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=22.09 E-value=58 Score=20.92 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=19.5
Q ss_pred eeceecHHHHHHHh--------hCCCCeEEEcCCC
Q psy6888 22 LFLSVNNILQTAHL--------AGGAKKVIISAPS 48 (69)
Q Consensus 22 tG~~~t~e~a~~HL--------~~GAKkVIISaPs 48 (69)
||+.++-..+-.++ ...-++|++++|+
T Consensus 28 TGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~s 62 (236)
T PF13086_consen 28 TGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPS 62 (236)
T ss_dssp SSHHHHHHHHHHHH-------HCCCSS-EEEEESS
T ss_pred CChHHHHHHHHHHhccchhhhhhhccccceeecCC
Confidence 88887776666666 4566789998886
No 105
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.09 E-value=74 Score=23.69 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=12.2
Q ss_pred eeceecHHHHHHHh-hCCCCeEEE
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVII 44 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVII 44 (69)
||.. ...+...| +.||++|.+
T Consensus 229 TG~T--l~~aa~~Lk~~GA~~V~~ 250 (320)
T PRK02269 229 TAGT--ICHAADALAEAGATEVYA 250 (320)
T ss_pred cHHH--HHHHHHHHHHCCCCEEEE
Confidence 7754 33344444 468888765
No 106
>KOG4201|consensus
Probab=21.74 E-value=1.2e+02 Score=22.92 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=19.3
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEc
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIIS 45 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIIS 45 (69)
.+|.| |.++....-++|+|-|++-
T Consensus 243 ~SGi~-tpdDia~~q~~GV~avLVG 266 (289)
T KOG4201|consen 243 LSGIF-TPDDIAKYQKAGVKAVLVG 266 (289)
T ss_pred ccCCC-CHHHHHHHHHcCceEEEec
Confidence 39999 6677777778899999884
No 107
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=21.71 E-value=1.6e+02 Score=22.30 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=35.7
Q ss_pred cccccccceeeEeeeceecHHHHHHHhhCCCCeEEEcC----------CCC---CCCeEEecCCCCCCCCCC
Q psy6888 9 IKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISA----------PSA---DAPMFVCGVNLDKFEWKE 67 (69)
Q Consensus 9 i~~t~~~~~~~~~tG~~~t~e~a~~HL~~GAKkVIISa----------Ps~---d~pt~V~GVN~~~y~~~~ 67 (69)
++|..-.+-++.-||+-...=...+-++.+|+.|+..+ |-+ ++.++++.+|.+.+..+|
T Consensus 80 ~~W~~g~i~~a~W~GV~L~dlL~~ag~~~~a~~V~~~g~D~~~y~~sipl~~a~~~~lLAy~mNGepL~~~h 151 (326)
T cd02113 80 AQYTHGMLSCSEWTGVPLSTLLEEAGVKPGAKWLLAEGADAAAMTRSIPLEKALDDALVAYAQNGEALRPEN 151 (326)
T ss_pred ccccccceeEEEEEeeEHHHHHHhcCCCCCceEEEEEecCCCceeEEeeHHHhCcCcEEEEeeCCeECChhh
Confidence 34554445556668877543223334455677777754 211 356999999998886654
No 108
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.79 E-value=98 Score=21.56 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=12.9
Q ss_pred eeceecHHHHHHHhhCCCCeEEE
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVII 44 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVII 44 (69)
||.. -.+.++.-.++||++|-+
T Consensus 199 TG~T-l~~~~~~L~~~g~~~V~~ 220 (227)
T PRK11595 199 TGST-VAEIAQLLLRNGAASVQV 220 (227)
T ss_pred chHH-HHHHHHHHHHcCCcEEEE
Confidence 7764 223344444679998754
No 109
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=20.69 E-value=1.7e+02 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=29.9
Q ss_pred eeeEeeecee--cHHHHHHHhh-CCCCeEEEcCCCCCCCeEEecCCC
Q psy6888 17 LIFLVLFLSV--NNILQTAHLA-GGAKKVIISAPSADAPMFVCGVNL 60 (69)
Q Consensus 17 ~~~~~tG~~~--t~e~a~~HL~-~GAKkVIISaPs~d~pt~V~GVN~ 60 (69)
..++.||.+. +++.+..-++ .|++ +.+..++.+..+|+|-+.
T Consensus 594 ~~~v~TG~l~~~~R~e~~~~i~~~G~~--v~~sVs~kt~~lv~G~~~ 638 (665)
T PRK07956 594 KTVVLTGTLEQLSRDEAKEKLEALGAK--VSGSVSKKTDLVVAGEAA 638 (665)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCE--EeCcccCCCCEEEECCCC
Confidence 3567799995 5787877665 4665 456667778888989763
No 110
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=20.43 E-value=1.2e+02 Score=19.72 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=15.1
Q ss_pred HHHHHHHhhCCCCeEEEcCCC
Q psy6888 28 NILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 28 ~e~a~~HL~~GAKkVIISaPs 48 (69)
.+.++...+.|+|+|++-.|+
T Consensus 80 ~~~l~~l~~~G~~~i~v~p~g 100 (135)
T cd00419 80 DDALEELAKEGVKNVVVVPIG 100 (135)
T ss_pred HHHHHHHHHcCCCeEEEECCc
Confidence 355556667899999996663
No 111
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=20.41 E-value=73 Score=26.48 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=28.0
Q ss_pred eeceecHHHHHHHhhCCCCeEEE-cCCCCCCCeEEecCC
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVII-SAPSADAPMFVCGVN 59 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVII-SaPs~d~pt~V~GVN 59 (69)
|-++-|..-+++-++.|+|++++ |+=-+-.|+=|||..
T Consensus 351 tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaT 389 (588)
T COG1086 351 TNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGAT 389 (588)
T ss_pred HhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHH
Confidence 66677778888888999999874 533223689899863
No 112
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.08 E-value=1.1e+02 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.5
Q ss_pred eeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 22 LFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
+|+.+|-.++...++.--+||+|.|-
T Consensus 150 ~GKTTTIaKLA~~l~~~g~~VllaA~ 175 (340)
T COG0552 150 VGKTTTIAKLAKYLKQQGKSVLLAAG 175 (340)
T ss_pred CchHhHHHHHHHHHHHCCCeEEEEec
Confidence 99999999999988887789998653
No 113
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=20.00 E-value=2.2e+02 Score=21.07 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=28.5
Q ss_pred eeEeeecee-cHHHHHHHhh-CCCCeEEEcCCCCCCCeEEecCCCC
Q psy6888 18 IFLVLFLSV-NNILQTAHLA-GGAKKVIISAPSADAPMFVCGVNLD 61 (69)
Q Consensus 18 ~~~~tG~~~-t~e~a~~HL~-~GAKkVIISaPs~d~pt~V~GVN~~ 61 (69)
.++.||.+. +++.+...+. .|++ +-++-++.+..+|.|-|..
T Consensus 237 ~~v~TG~l~~~R~e~~~~~~~~G~~--v~~sVs~~t~~lv~g~~~~ 280 (313)
T PRK06063 237 RVALSAEVSRTHEELVERILHAGLA--YSDSVDRDTSLVVCNDPAP 280 (313)
T ss_pred EEEEecCCCCCHHHHHHHHHHcCCE--ecCccccCccEEEECCCCC
Confidence 455699885 7777777665 4665 2344456778889887654
Done!