Query psy6888
Match_columns 69
No_of_seqs 124 out of 1081
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pym_A GAPDH 3, glyceraldehyde 99.8 6.7E-21 2.3E-25 141.4 4.7 61 7-67 81-142 (332)
2 3h9e_O Glyceraldehyde-3-phosph 99.8 1.3E-20 4.4E-25 140.4 4.7 59 7-65 86-145 (346)
3 3v1y_O PP38, glyceraldehyde-3- 99.8 1.2E-20 4E-25 140.3 3.0 61 7-67 85-146 (337)
4 3lvf_P GAPDH 1, glyceraldehyde 99.8 3.4E-20 1.2E-24 137.9 4.2 60 7-66 83-144 (338)
5 3doc_A Glyceraldehyde 3-phosph 99.8 3.3E-20 1.1E-24 137.7 3.8 61 7-67 83-145 (335)
6 3ids_C GAPDH, glyceraldehyde-3 99.8 3.1E-20 1.1E-24 139.1 2.4 59 7-65 95-155 (359)
7 4dib_A GAPDH, glyceraldehyde 3 99.8 5.1E-20 1.7E-24 137.3 3.4 59 7-65 83-143 (345)
8 3hja_A GAPDH, glyceraldehyde-3 99.7 1.9E-19 6.4E-24 134.7 0.4 60 7-66 99-165 (356)
9 1obf_O Glyceraldehyde 3-phosph 99.7 5.6E-18 1.9E-22 125.4 4.3 60 7-66 83-145 (335)
10 2b4r_O Glyceraldehyde-3-phosph 99.7 1.1E-17 3.8E-22 124.3 3.1 60 7-66 91-152 (345)
11 2ep7_A GAPDH, glyceraldehyde-3 99.7 7.1E-18 2.4E-22 125.2 2.0 58 8-65 82-141 (342)
12 2g82_O GAPDH, glyceraldehyde-3 99.6 4.8E-17 1.6E-21 119.5 3.3 59 7-65 78-138 (331)
13 2d2i_A Glyceraldehyde 3-phosph 99.6 1.9E-16 6.4E-21 118.7 3.0 60 7-66 83-145 (380)
14 1rm4_O Glyceraldehyde 3-phosph 99.6 5.6E-16 1.9E-20 114.2 2.9 59 7-65 83-143 (337)
15 3b1j_A Glyceraldehyde 3-phosph 99.6 1E-15 3.5E-20 112.5 4.2 59 7-65 83-144 (339)
16 3cps_A Glyceraldehyde 3-phosph 99.6 6.6E-16 2.3E-20 114.5 2.4 59 7-65 97-157 (354)
17 3cmc_O GAPDH, glyceraldehyde-3 99.6 1E-15 3.5E-20 112.3 3.2 59 7-65 80-140 (334)
18 3e5r_O PP38, glyceraldehyde-3- 99.6 9.1E-16 3.1E-20 112.4 2.5 59 7-65 85-144 (337)
19 1hdg_O Holo-D-glyceraldehyde-3 99.5 1.3E-15 4.5E-20 111.6 2.5 59 7-65 81-141 (332)
20 1u8f_O GAPDH, glyceraldehyde-3 99.5 2.7E-15 9.4E-20 109.3 3.4 59 7-65 83-142 (335)
21 1gad_O D-glyceraldehyde-3-phos 99.5 3.5E-15 1.2E-19 109.2 2.6 62 7-68 80-143 (330)
22 2x5j_O E4PDH, D-erythrose-4-ph 99.5 4.8E-15 1.6E-19 108.8 3.2 59 7-65 84-145 (339)
23 2yyy_A Glyceraldehyde-3-phosph 98.9 1.7E-10 5.9E-15 84.5 0.9 53 15-68 81-138 (343)
24 2czc_A Glyceraldehyde-3-phosph 98.4 3.1E-08 1.1E-12 71.2 -0.2 52 15-67 79-134 (334)
25 2yv3_A Aspartate-semialdehyde 98.4 6.2E-08 2.1E-12 70.2 1.3 51 15-65 61-115 (331)
26 1cf2_P Protein (glyceraldehyde 98.4 4.3E-08 1.5E-12 71.2 -0.3 53 15-68 78-134 (337)
27 1b7g_O Protein (glyceraldehyde 98.1 2.4E-07 8.3E-12 67.3 -1.3 50 15-64 77-129 (340)
28 1t4b_A Aspartate-semialdehyde 98.0 3.7E-07 1.3E-11 67.2 -1.6 51 15-65 65-121 (367)
29 2hjs_A USG-1 protein homolog; 97.9 1.1E-06 3.9E-11 63.6 -0.3 53 14-66 67-122 (340)
30 2r00_A Aspartate-semialdehyde 97.9 3E-06 1E-10 61.3 1.7 54 10-65 62-119 (336)
31 3pzr_A Aspartate-semialdehyde 97.8 1.4E-06 4.8E-11 64.7 -1.6 51 14-64 63-119 (370)
32 3uw3_A Aspartate-semialdehyde 97.6 4.1E-06 1.4E-10 62.3 -1.3 51 14-64 67-123 (377)
33 3pwk_A Aspartate-semialdehyde 97.3 4.6E-05 1.6E-09 56.4 0.4 52 14-65 63-118 (366)
34 2ep5_A 350AA long hypothetical 97.2 5E-05 1.7E-09 54.9 0.2 48 15-64 77-130 (350)
35 3tz6_A Aspartate-semialdehyde 97.1 0.0001 3.4E-09 54.1 0.7 52 14-65 62-118 (344)
36 1ys4_A Aspartate-semialdehyde 97.1 0.00013 4.4E-09 52.7 1.2 48 15-64 83-136 (354)
37 4dpk_A Malonyl-COA/succinyl-CO 97.1 0.00021 7.1E-09 52.5 2.1 50 15-64 79-132 (359)
38 4dpl_A Malonyl-COA/succinyl-CO 97.1 0.00021 7.1E-09 52.5 2.1 50 15-64 79-132 (359)
39 1xyg_A Putative N-acetyl-gamma 96.8 0.00012 4.2E-09 53.4 -0.9 53 15-68 82-157 (359)
40 2ozp_A N-acetyl-gamma-glutamyl 96.8 0.00016 5.6E-09 52.3 -0.4 54 14-67 67-142 (345)
41 3dr3_A N-acetyl-gamma-glutamyl 96.0 0.001 3.6E-08 48.5 0.0 54 14-67 74-150 (337)
42 3hsk_A Aspartate-semialdehyde 96.0 0.0035 1.2E-07 46.5 2.6 51 14-64 92-146 (381)
43 2nqt_A N-acetyl-gamma-glutamyl 94.9 0.0028 9.6E-08 46.3 -1.2 50 15-65 80-149 (352)
44 4gj1_A 1-(5-phosphoribosyl)-5- 78.7 1.7 5.9E-05 29.6 3.2 29 21-49 80-108 (243)
45 2k6g_A Replication factor C su 59.7 15 0.00053 22.4 4.2 41 18-60 37-80 (109)
46 2ebu_A Replication factor C su 54.0 18 0.00062 22.4 3.9 41 18-60 27-70 (112)
47 1l7b_A DNA ligase; BRCT, autos 45.5 18 0.00062 21.4 2.8 40 18-59 12-53 (92)
48 1vkf_A Glycerol uptake operon 42.8 21 0.0007 24.3 3.0 28 19-47 152-179 (188)
49 3vk5_A MOEO5; TIM barrel, tran 41.7 27 0.00093 25.2 3.7 30 19-48 230-259 (286)
50 1wd5_A Hypothetical protein TT 36.6 13 0.00045 24.2 1.2 24 22-47 132-156 (208)
51 3npg_A Uncharacterized DUF364 29.6 11 0.00036 26.2 -0.1 45 15-59 164-213 (249)
52 3l5o_A Uncharacterized protein 28.4 15 0.0005 26.1 0.4 36 15-50 186-223 (270)
53 2geb_A Hypoxanthine-guanine ph 27.7 36 0.0012 21.7 2.2 23 22-46 110-133 (185)
54 1qwg_A PSL synthase;, (2R)-pho 27.4 32 0.0011 24.4 2.0 19 29-47 152-170 (251)
55 1pzm_A HGPRT, hypoxanthine-gua 27.2 36 0.0012 22.4 2.2 23 22-46 130-153 (211)
56 3ic5_A Putative saccharopine d 26.9 40 0.0014 18.5 2.1 31 15-45 69-100 (118)
57 2h1q_A Hypothetical protein; Z 26.7 17 0.00057 25.7 0.4 35 15-50 186-223 (270)
58 1tc1_A Protein (hypoxanthine p 26.1 38 0.0013 22.6 2.2 23 22-46 115-138 (220)
59 3tdn_A FLR symmetric alpha-bet 25.7 52 0.0018 21.5 2.8 27 21-47 84-110 (247)
60 1thf_D HISF protein; thermophI 24.9 85 0.0029 20.3 3.7 26 21-46 79-104 (253)
61 4fs3_A Enoyl-[acyl-carrier-pro 24.1 89 0.003 20.4 3.7 28 18-46 8-39 (256)
62 1qo2_A Molecule: N-((5-phospho 24.1 89 0.003 20.2 3.7 26 21-46 78-103 (241)
63 1yfz_A Hypoxanthine-guanine ph 23.6 47 0.0016 21.5 2.2 23 22-46 130-153 (205)
64 1f06_A MESO-diaminopimelate D- 23.0 61 0.0021 22.3 2.8 33 15-48 58-91 (320)
65 1ka9_F Imidazole glycerol phos 22.6 77 0.0026 20.5 3.1 26 21-46 80-105 (252)
66 1vch_A Phosphoribosyltransfera 22.4 51 0.0017 20.4 2.1 21 22-44 132-153 (175)
67 1hgx_A HGXPRTASE, hypoxanthine 21.7 54 0.0018 20.7 2.1 23 22-46 107-130 (183)
68 2cqj_A BRMS2, U3 small nucleol 21.4 38 0.0013 19.0 1.2 17 22-38 17-33 (71)
69 1viz_A PCRB protein homolog; s 21.0 1.1E+02 0.0037 21.0 3.7 27 19-46 185-211 (240)
70 1vdm_A Purine phosphoribosyltr 20.2 66 0.0023 19.3 2.3 19 22-42 95-114 (153)
71 1zn8_A APRT, adenine phosphori 20.1 60 0.002 20.3 2.1 23 22-46 132-155 (180)
No 1
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=99.82 E-value=6.7e-21 Score=141.35 Aligned_cols=61 Identities=34% Similarity=0.379 Sum_probs=57.7
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE 67 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~~ 67 (69)
++|||...|+++|++ ||.|++++++++|+++||||||||+|++|+|||||||||++|++++
T Consensus 81 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~ 142 (332)
T 3pym_A 81 ANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL 142 (332)
T ss_dssp GGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTC
T ss_pred ccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCCCCeEeeccchhhcCccc
Confidence 579999999999996 9999999999999999999999999999999999999999998743
No 2
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Probab=99.81 E-value=1.3e-20 Score=140.44 Aligned_cols=59 Identities=32% Similarity=0.451 Sum_probs=56.9
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~ 65 (69)
++|||.+.|+|+|++ ||.|+++++++.|+++||||||||+|++|+||||+||||++|++
T Consensus 86 ~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d~plvV~gVN~~~~~~ 145 (346)
T 3h9e_O 86 KQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP 145 (346)
T ss_dssp GGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCT
T ss_pred hhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeeCcccCHHHcCc
Confidence 579999999999996 99999999999999999999999999999999999999999986
No 3
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=99.80 E-value=1.2e-20 Score=140.28 Aligned_cols=61 Identities=48% Similarity=0.596 Sum_probs=57.7
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE 67 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~~ 67 (69)
++|||...|+++|++ ||.|+++++++.|+++||||||||+|++|+||||+||||++|++++
T Consensus 85 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~ 146 (337)
T 3v1y_O 85 DEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI 146 (337)
T ss_dssp GGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSSSCBCCTTTTGGGCCTTC
T ss_pred ccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeECCCCCHHHcCCCC
Confidence 579999999999996 9999999999999999999999999999999999999999998743
No 4
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=99.79 E-value=3.4e-20 Score=137.93 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=56.7
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt~V~GVN~~~y~~~ 66 (69)
++|||...|+++|++ ||.|+++++++.|+++||||||||+|++ |+||||+||||++|+++
T Consensus 83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~ 144 (338)
T 3lvf_P 83 SKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGS 144 (338)
T ss_dssp GGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCSC
T ss_pred ccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcCcc
Confidence 579999999999996 9999999999999999999999999997 68999999999999864
No 5
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*
Probab=99.79 E-value=3.3e-20 Score=137.73 Aligned_cols=61 Identities=31% Similarity=0.297 Sum_probs=57.0
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKE 67 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~ 67 (69)
++|||...|+++|++ ||.|+++++++.|+++||||||||+|++| +||||+||||++|++++
T Consensus 83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~~~~~ 145 (335)
T 3doc_A 83 AELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDH 145 (335)
T ss_dssp TSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGCCTTC
T ss_pred ccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHhCccC
Confidence 579999999999996 99999999999999999999999999987 69999999999998743
No 6
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Probab=99.78 E-value=3.1e-20 Score=139.08 Aligned_cols=59 Identities=29% Similarity=0.387 Sum_probs=56.2
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt~V~GVN~~~y~~ 65 (69)
++|||...|+++|++ ||.|+++++++.|+++||||||||+|++ |+|||||||||++|++
T Consensus 95 ~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~ 155 (359)
T 3ids_C 95 ADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNP 155 (359)
T ss_dssp TTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGCCT
T ss_pred ccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHcCC
Confidence 579999999999996 9999999999999999999999999997 6899999999999987
No 7
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}
Probab=99.78 E-value=5.1e-20 Score=137.35 Aligned_cols=59 Identities=27% Similarity=0.338 Sum_probs=56.1
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt~V~GVN~~~y~~ 65 (69)
++|||...|+++|++ ||.|+++++++.|+++||||||||+|++ |+||||+||||++|++
T Consensus 83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~ 143 (345)
T 4dib_A 83 KELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDI 143 (345)
T ss_dssp GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCT
T ss_pred hhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHcCc
Confidence 579999999999996 9999999999999999999999999997 5799999999999986
No 8
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Probab=99.74 E-value=1.9e-19 Score=134.73 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=56.5
Q ss_pred cccccccccceeeEe-eeceec----HHHHHHHhh-CCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVN----NILQTAHLA-GGAKKVIISAPSAD-APMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t----~e~a~~HL~-~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~ 66 (69)
++|||...|+++|++ ||.|++ +++++.|++ +||||||||+|++| +||||+||||++|+++
T Consensus 99 ~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV~gVN~~~~~~~ 165 (356)
T 3hja_A 99 KNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSD 165 (356)
T ss_dssp GGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECCTTTSGGGCCTT
T ss_pred hhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEeccCCHHHcCcC
Confidence 679999999999996 999999 999999999 99999999999986 6999999999999874
No 9
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=99.70 E-value=5.6e-18 Score=125.36 Aligned_cols=60 Identities=33% Similarity=0.394 Sum_probs=56.4
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCC-eEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAP-MFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~p-t~V~GVN~~~y~~~ 66 (69)
+++||.+.|+++|++ ||.|++++.++.|+++||||||||+|++ |.| |||+|||++.|+++
T Consensus 83 ~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~dvp~~vV~gVN~~~~~~~ 145 (335)
T 1obf_O 83 AQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKST 145 (335)
T ss_dssp GGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTT
T ss_pred ccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccCCCCceEEccCCHHHhCcC
Confidence 489999999999997 9999999999999999999999999997 679 99999999999863
No 10
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=99.68 E-value=1.1e-17 Score=124.34 Aligned_cols=60 Identities=33% Similarity=0.528 Sum_probs=56.2
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~ 66 (69)
+++||.+.|+++|++ ||.|++++.++.|+++||||||||+|+++ .||||+|||++.|+++
T Consensus 91 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~dvplvV~gVN~~~~~~~ 152 (345)
T 2b4r_O 91 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTK 152 (345)
T ss_dssp GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTT
T ss_pred ccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHhCCC
Confidence 489999999999997 99999999999999999999999999986 6999999999999863
No 11
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}
Probab=99.68 E-value=7.1e-18 Score=125.16 Aligned_cols=58 Identities=31% Similarity=0.386 Sum_probs=55.9
Q ss_pred ccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCC-eEEecCCCCCCCC
Q psy6888 8 EIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAP-MFVCGVNLDKFEW 65 (69)
Q Consensus 8 ~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~p-t~V~GVN~~~y~~ 65 (69)
++||.+.|+++|++ ||.|++++.++.|+++||||||||+|++|.| |||+|||++.|++
T Consensus 82 ~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~dvp~~vV~gVN~~~~~~ 141 (342)
T 2ep7_A 82 QIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNP 141 (342)
T ss_dssp GCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBSCSEECCTTTSGGGCCT
T ss_pred hCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCCCCceEEcCcCHHHhcc
Confidence 79999999999997 9999999999999999999999999999999 9999999999986
No 12
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=99.65 E-value=4.8e-17 Score=119.52 Aligned_cols=59 Identities=32% Similarity=0.368 Sum_probs=55.4
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~ 65 (69)
+++||.+.|+|+|++ ||.|++++.++.|+++||||||||+|++| .||+|+|||+++|++
T Consensus 78 ~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~~~~ 138 (331)
T 2g82_O 78 KEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDP 138 (331)
T ss_dssp GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCT
T ss_pred hhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHHhCc
Confidence 358999999999997 99999999999999999999999999987 699999999999986
No 13
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A
Probab=99.61 E-value=1.9e-16 Score=118.66 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=55.7
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CC-eEEecCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-AP-MFVCGVNLDKFEWK 66 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~p-t~V~GVN~~~y~~~ 66 (69)
+++||.+.|+|+|++ ||.|++++.+++||++||||||||+|++| .| |+|||||+++|++.
T Consensus 83 ~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d~~p~~~V~GVN~e~~~~~ 145 (380)
T 2d2i_A 83 LNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHE 145 (380)
T ss_dssp GGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTT
T ss_pred HHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCCCCCceEEcccCHHHhccc
Confidence 378998889999997 99999999999999999999999999987 68 99999999999873
No 14
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*
Probab=99.57 E-value=5.6e-16 Score=114.17 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=54.6
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~ 65 (69)
++|||.+.|+|+|++ ||.|++++.++.|+++|||+|++|+|+.| .||+|||||+++|++
T Consensus 83 ~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~d~p~~V~GVN~~~~~~ 143 (337)
T 1rm4_O 83 VNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTH 143 (337)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCCBCCTTTTGGGCCT
T ss_pred hhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccCCCCeEeecCCHHHhCC
Confidence 457898889999997 99999999999999999999999999876 699999999999985
No 15
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=99.57 E-value=1e-15 Score=112.46 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=55.4
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CC-eEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-AP-MFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~p-t~V~GVN~~~y~~ 65 (69)
+++||.+.|+|+|++ ||.|++++.+..|+++||||||||+|++| .| ++|||||++.|++
T Consensus 83 ~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~~~~ 144 (339)
T 3b1j_A 83 LNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRH 144 (339)
T ss_dssp GGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCT
T ss_pred HHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHHhCc
Confidence 388999899999997 99999999999999999999999999986 68 9999999999987
No 16
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=99.56 E-value=6.6e-16 Score=114.53 Aligned_cols=59 Identities=39% Similarity=0.452 Sum_probs=54.9
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~ 65 (69)
++|||.+.|+|+|++ ||.|.+++.+.+|+++||||||||+|++| .|++|||||+++|++
T Consensus 97 ~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd~~p~~V~GVN~~~~~~ 157 (354)
T 3cps_A 97 AEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDP 157 (354)
T ss_dssp GGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSCCCBCCTTTTGGGCCT
T ss_pred HHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCCCCCEEEeccCHHHhCc
Confidence 468898889999997 99999999999999999999999999986 699999999999986
No 17
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=99.56 E-value=1e-15 Score=112.29 Aligned_cols=59 Identities=32% Similarity=0.340 Sum_probs=55.2
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~ 65 (69)
+++||.+.|+|+|++ ||.|.+++.+..|+++||||||||+|++| .|++|+|||+++|++
T Consensus 80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d~~p~~V~eVN~~~i~~ 140 (334)
T 3cmc_O 80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDP 140 (334)
T ss_dssp GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCT
T ss_pred hhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCccCCCEeccccCHHHhCc
Confidence 458999899999997 99999999999999999999999999987 689999999999986
No 18
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=99.55 E-value=9.1e-16 Score=112.38 Aligned_cols=59 Identities=49% Similarity=0.628 Sum_probs=55.1
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~ 65 (69)
+++||...|+|+|++ ||.|.+++.+.+|+++|+||||||+|++|.|++|||||+++|++
T Consensus 85 ~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~d~p~~V~gvN~~~~~~ 144 (337)
T 3e5r_O 85 DEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTS 144 (337)
T ss_dssp GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCT
T ss_pred HHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCCCCCEEEeccCHHHhCC
Confidence 467788889999997 99999999999999999999999999988899999999999985
No 19
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=99.54 E-value=1.3e-15 Score=111.64 Aligned_cols=59 Identities=27% Similarity=0.290 Sum_probs=55.2
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCC-eEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAP-MFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~p-t~V~GVN~~~y~~ 65 (69)
+++||.+.|+|+|+. ||.|.+++.+..|+++||||||||+|++|.| ++|+|||+++|++
T Consensus 81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~d~p~~~V~eVN~~~i~~ 141 (332)
T 1hdg_O 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKP 141 (332)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCT
T ss_pred HHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCCCCCceEEeccCHHHhCC
Confidence 458898889999997 9999999999999999999999999998889 9999999999985
No 20
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=99.53 E-value=2.7e-15 Score=109.35 Aligned_cols=59 Identities=46% Similarity=0.526 Sum_probs=55.4
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~ 65 (69)
+++||.+.|+|+|++ ||.|.+++.+.+|+++|||+|++|+|++|.|++|||||+++|++
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~~~p~~V~gvN~~~~~~ 142 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDN 142 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCT
T ss_pred HHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCCCCCeEEeccCHHHhCC
Confidence 478898899999997 99999999999999999999999999878899999999999985
No 21
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Probab=99.51 E-value=3.5e-15 Score=109.16 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=55.6
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~i 68 (69)
++|||...|+|+|+. ||.|.+++.+..|+++|||+|++|+|+++ .|++|||||+++|+...|
T Consensus 80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~~~p~~V~GvN~~~~~~~~i 143 (330)
T 1gad_O 80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI 143 (330)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCSCSE
T ss_pred hhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCCCCCeEeecCCHHHhCCCCE
Confidence 567898889999997 99999999999999999999999999964 699999999999985444
No 22
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*
Probab=99.51 E-value=4.8e-15 Score=108.77 Aligned_cols=59 Identities=29% Similarity=0.313 Sum_probs=54.7
Q ss_pred cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC-CCCC-eEEecCCCCCCCC
Q psy6888 7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS-ADAP-MFVCGVNLDKFEW 65 (69)
Q Consensus 7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs-~d~p-t~V~GVN~~~y~~ 65 (69)
+++||.+.|+|+|++ ||.|++++.+..|+++||||||||+|+ .|.| ++|+|||++.|++
T Consensus 84 ~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~d~p~~~V~gvN~~~~~~ 145 (339)
T 2x5j_O 84 QSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRA 145 (339)
T ss_dssp GGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCTTSSEECCTTTSGGGCCT
T ss_pred HHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccCCCCceeecccCHHHhcC
Confidence 368898889999997 999999999999999999999999998 5778 9999999999986
No 23
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=98.92 E-value=1.7e-10 Score=84.46 Aligned_cols=53 Identities=9% Similarity=-0.078 Sum_probs=46.1
Q ss_pred cceeeEe-eeceecHHHHH-HHhhCCCCeEEEcCCCC-C-CC-eEEecCCCCCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQT-AHLAGGAKKVIISAPSA-D-AP-MFVCGVNLDKFEWKEV 68 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~-~HL~~GAKkVIISaPs~-d-~p-t~V~GVN~~~y~~~~i 68 (69)
|+|+|++ ||.+.+.+.+. .|+++| ++||+|+|++ | .| +||+|||+++|++..|
T Consensus 81 ~vDiV~eatg~~~s~~~a~~~~l~aG-~~VI~sap~~~d~vp~~vV~gvN~~~~~~~~i 138 (343)
T 2yyy_A 81 DADIVVDGAPKKIGKQNLENIYKPHK-VKAILQGGEKAKDVEDNFNALWSYNRCYGKDY 138 (343)
T ss_dssp GCSEEEECCCTTHHHHHHHHTTTTTT-CEEEECTTSCGGGSSEEECTTTTHHHHTTCSE
T ss_pred CCCEEEECCCccccHHHHHHHHHHCC-CEEEECCCccccCCCceEEcccCHHHhccCCE
Confidence 8999997 99998888995 999999 7799999987 5 68 9999999999875433
No 24
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=98.40 E-value=3.1e-08 Score=71.25 Aligned_cols=52 Identities=21% Similarity=0.097 Sum_probs=44.8
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-C-C-CeEEecCCCCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-D-A-PMFVCGVNLDKFEWKE 67 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d-~-pt~V~GVN~~~y~~~~ 67 (69)
++|.|++ |+.+.+.+.+..|+++| |+||+++|.+ | . |++|+|+|+++|++..
T Consensus 79 ~vDvV~~aTp~~~h~~~a~~~l~aG-k~Vi~sap~~~d~~~~~~v~~vn~~~~~~~~ 134 (334)
T 2czc_A 79 KVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKADVAEVSFVAQANYEAALGKN 134 (334)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCGGGSSEEECHHHHGGGGTTCS
T ss_pred CCCEEEECCCccccHHHHHHHHHcC-CceEeecccccccccceEEeccCHHHHhhCC
Confidence 8899987 99998899999999999 7799999986 4 3 5999999999887544
No 25
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}
Probab=98.40 E-value=6.2e-08 Score=70.17 Aligned_cols=51 Identities=22% Similarity=0.062 Sum_probs=45.1
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--C-CCCeEEecCCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--A-DAPMFVCGVNLDKFEW 65 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~-d~pt~V~GVN~~~y~~ 65 (69)
|+|+|++ ||.+.+++.+..|+++|+|.|.+|++. + |.|++|++||++.|++
T Consensus 61 ~~DvV~~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~ 115 (331)
T 2yv3_A 61 PVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQ 115 (331)
T ss_dssp CCSEEEECSHHHHHHHHHHHHHHTTCEEEECSSSSTTCTTSCBCCTTSCGGGGGG
T ss_pred CCCEEEECCCccchHHHHHHHHHCCCEEEECCCccccCCCCCEEEcCcCHHHhcC
Confidence 8999997 999999999999999999877777774 3 5799999999999986
No 26
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=98.36 E-value=4.3e-08 Score=71.16 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=45.6
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC--CeEEecCCCCCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA--PMFVCGVNLDKFEWKEV 68 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~--pt~V~GVN~~~y~~~~i 68 (69)
++|.|+. ||.+.+++.+..|+++|+ +||.++|.+ |. |++|+|+|++.+++..|
T Consensus 78 ~vDvV~~atp~~~~~~~a~~~l~aG~-~VId~sp~~~d~~~~~~V~gvN~e~~~~~~i 134 (337)
T 1cf2_P 78 EADIVIDCTPEGIGAKNLKMYKEKGI-KAIFQGGEKHEDIGLSFNSLSNYEESYGKDY 134 (337)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTC-CEEECTTSCHHHHSCEECHHHHGGGGTTCSE
T ss_pred CCCEEEECCCchhhHHHHHHHHHcCC-EEEEecCCCCccCCCeEEeeeCHHHhcCCCE
Confidence 7888887 999999999999999995 599999985 33 89999999999876444
No 27
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=98.09 E-value=2.4e-07 Score=67.27 Aligned_cols=50 Identities=12% Similarity=-0.033 Sum_probs=43.6
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFE 64 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~ 64 (69)
++|.|++ ||.+.+++.+..|+++|+|+|.+|+|..+ +++||+|+|++++.
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~ 129 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEAL 129 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHT
T ss_pred CCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHc
Confidence 6888887 99999999999999999999999999764 47999999965543
No 28
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=98.01 E-value=3.7e-07 Score=67.17 Aligned_cols=51 Identities=22% Similarity=0.078 Sum_probs=45.9
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFEW 65 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~~ 65 (69)
|+|+|+. ||.+.+++.+..|+++|+|+|+|++|++ +.|++|.+||++.|++
T Consensus 65 ~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~ 121 (367)
T 1t4b_A 65 ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITD 121 (367)
T ss_dssp TCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhh
Confidence 8899987 9999999999999999999999999986 4689999999887753
No 29
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Probab=97.93 E-value=1.1e-06 Score=63.64 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWK 66 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~ 66 (69)
.|+|.|+. ||.+.+++.+..|+++|+|+|.+|+|..| .|++|.+||++.|++.
T Consensus 67 ~~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~i~~~ 122 (340)
T 2hjs_A 67 SSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQ 122 (340)
T ss_dssp GGCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGGS
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHHHhcC
Confidence 38899887 99999999999999999998889999753 4788888999998753
No 30
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=97.92 E-value=3e-06 Score=61.35 Aligned_cols=54 Identities=15% Similarity=0.006 Sum_probs=46.1
Q ss_pred ccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC---CCCCeEEecCCCCCCCC
Q psy6888 10 KSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS---ADAPMFVCGVNLDKFEW 65 (69)
Q Consensus 10 ~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs---~d~pt~V~GVN~~~y~~ 65 (69)
+| .|+|+|+. ||.+.+++.+..|+++|++.|.+|++. ++.|++|.+||++.|++
T Consensus 62 ~~--~~vDvVf~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~ 119 (336)
T 2r00_A 62 DW--SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 119 (336)
T ss_dssp CG--GGCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGG
T ss_pred Hh--cCCCEEEECCCchHHHHHHHHHHHcCCEEEEcCCccccCCCCCeEeccCCHHHhcc
Confidence 56 38999987 999999999999999999877788885 24689999999999874
No 31
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Probab=97.80 E-value=1.4e-06 Score=64.67 Aligned_cols=51 Identities=22% Similarity=0.066 Sum_probs=44.9
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE 64 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~ 64 (69)
-|+|+|+. ||.+.+++.+..|+++|+|++||+.|++ |.|++|.+||++.++
T Consensus 63 ~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~ 119 (370)
T 3pzr_A 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQIL 119 (370)
T ss_dssp TTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred ccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHh
Confidence 37889886 9999999999999999999999999984 358999999998775
No 32
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}
Probab=97.64 E-value=4.1e-06 Score=62.33 Aligned_cols=51 Identities=24% Similarity=0.122 Sum_probs=44.6
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE 64 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~ 64 (69)
.|+|+|+. ||.+.+++.+..|+++|+|++||+.|++ |.|++|.+||++.++
T Consensus 67 ~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~ 123 (377)
T 3uw3_A 67 KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIK 123 (377)
T ss_dssp HTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred cCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHh
Confidence 37888886 9999999999999999999999999984 358999999998775
No 33
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A
Probab=97.27 E-value=4.6e-05 Score=56.40 Aligned_cols=52 Identities=19% Similarity=0.043 Sum_probs=45.3
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--C-CCCeEEecCCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--A-DAPMFVCGVNLDKFEW 65 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~-d~pt~V~GVN~~~y~~ 65 (69)
.|+|.|+. ||.+.+++.+..|+++|++.|-+|++. + +.|++|.+||++.+++
T Consensus 63 ~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~ 118 (366)
T 3pwk_A 63 EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDA 118 (366)
T ss_dssp TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTT
T ss_pred cCCCEEEECCChHhHHHHHHHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcC
Confidence 37889886 999999999999999999887788885 3 4699999999998875
No 34
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=97.23 E-value=5e-05 Score=54.95 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=41.2
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE 64 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~ 64 (69)
|+|.|++ ||.+.+++.+..|+++|+| +|+.|++ +.|++|.++|++.|+
T Consensus 77 ~vDvVf~atp~~~s~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~ 130 (350)
T 2ep5_A 77 DVDVVLSALPNELAESIELELVKNGKI--VVSNASPFRMDPDVPLINPEINWEHLE 130 (350)
T ss_dssp TCSEEEECCCHHHHHHHHHHHHHTTCE--EEECSSTTTTCTTSCBCCHHHHGGGGG
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCE--EEECCccccCCCCCCeeCCccCHHHhc
Confidence 7888887 9999999999999999988 5666654 468999999999886
No 35
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=97.10 E-value=0.0001 Score=54.09 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=43.9
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC---CCCCeEEecCCC-CCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS---ADAPMFVCGVNL-DKFEW 65 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs---~d~pt~V~GVN~-~~y~~ 65 (69)
.|+|+|+. ||.+.+++.+..|+++|++.|-+|++. ++.|++|.+||+ +.+++
T Consensus 62 ~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vID~Sa~~R~~~~~p~~vpevN~~~~i~~ 118 (344)
T 3tz6_A 62 SGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHR 118 (344)
T ss_dssp TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTSHHHHTTC
T ss_pred ccCCEEEECCChHHHHHHHHHHHhCCCEEEECCCccccCCCccEEEccCCCHHHhhh
Confidence 47888886 999999999999999999766677774 356999999999 87765
No 36
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=97.09 E-value=0.00013 Score=52.68 Aligned_cols=48 Identities=27% Similarity=0.342 Sum_probs=41.8
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE 64 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~ 64 (69)
|+|.|++ ||.+.+++.+..|+++|+| ||++|++ +.|+++.++|++.|+
T Consensus 83 ~~DvV~~atp~~~~~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~ 136 (354)
T 1ys4_A 83 DVDIVFSALPSDLAKKFEPEFAKEGKL--IFSNASAYRMEEDVPLVIPEVNADHLE 136 (354)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHHTTCE--EEECCSTTTTCTTSCBCCHHHHGGGGG
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCCE--EEECCchhcCCCCCCccCcccCHHHhc
Confidence 8999987 9999999999999999987 6788874 368999999998886
No 37
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=97.07 E-value=0.00021 Score=52.45 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC---CCCeEEecCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA---DAPMFVCGVNLDKFE 64 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~---d~pt~V~GVN~~~y~ 64 (69)
++|.|+. ||.+.+++.+..|+++|+|.|.+|++.. +.|.+|.+||.+.++
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~ 132 (359)
T 4dpk_A 79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTIS 132 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGG
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHh
Confidence 7888886 9999999999999999999999999963 468999999998874
No 38
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=97.07 E-value=0.00021 Score=52.45 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC---CCCeEEecCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA---DAPMFVCGVNLDKFE 64 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~---d~pt~V~GVN~~~y~ 64 (69)
++|.|+. ||.+.+++.+..|+++|+|.|.+|++.. +.|.+|.+||.+.++
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~ 132 (359)
T 4dpl_A 79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTIS 132 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGG
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHh
Confidence 7888886 9999999999999999999999999963 468999999998874
No 39
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Probab=96.82 E-value=0.00012 Score=53.37 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=41.6
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC------------------CeEEecC---CCCCCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA------------------PMFVCGV---NLDKFEWKEV 68 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~------------------pt~V~GV---N~~~y~~~~i 68 (69)
|+|.|++ ||.+.+++.+..| ++|++.|-+|++.. ++ +++|||+ |++.+++..|
T Consensus 82 ~vDvVf~atp~~~s~~~a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~~~~i 157 (359)
T 1xyg_A 82 TVDAVFCCLPHGTTQEIIKEL-PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARL 157 (359)
T ss_dssp GCSEEEECCCTTTHHHHHHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHTCSE
T ss_pred CCCEEEEcCCchhHHHHHHHH-hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhccCCE
Confidence 8899887 9999999999999 99997555666643 22 5899999 9887765443
No 40
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=96.79 E-value=0.00016 Score=52.34 Aligned_cols=54 Identities=19% Similarity=-0.037 Sum_probs=42.5
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC-----------------CeEEecC---CCCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA-----------------PMFVCGV---NLDKFEWKE 67 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~-----------------pt~V~GV---N~~~y~~~~ 67 (69)
.|+|.|+. ||.+.+++.+..|+++|+|.|.+|++.. ++ +++|||+ |++.++...
T Consensus 67 ~~vDvV~~a~g~~~s~~~a~~~~~aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~~i~~~~ 142 (345)
T 2ozp_A 67 EPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYREALKGAD 142 (345)
T ss_dssp CCCSEEEECCCTTHHHHTHHHHHTTCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHHHHHTCS
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccCHHHhhcCC
Confidence 38888886 9999999999999999998555677643 22 5899999 988776533
No 41
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=96.04 E-value=0.001 Score=48.49 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=43.4
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--CC--C---------------CeEEecC---CCCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--AD--A---------------PMFVCGV---NLDKFEWKE 67 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~d--~---------------pt~V~GV---N~~~y~~~~ 67 (69)
.++|.|+. ||.+.+++.+..|+++|+|.|-+|++. +| . +++|||+ |++.++...
T Consensus 74 ~~~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~~~~ 150 (337)
T 3dr3_A 74 PGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEAN 150 (337)
T ss_dssp TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHHTCS
T ss_pred cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHhCCCC
Confidence 37888886 999999999999999999988899996 23 1 2679999 887775443
No 42
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}
Probab=95.97 E-value=0.0035 Score=46.53 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=44.0
Q ss_pred ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--C-CCCeEEecCCCCCCC
Q psy6888 14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--A-DAPMFVCGVNLDKFE 64 (69)
Q Consensus 14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~-d~pt~V~GVN~~~y~ 64 (69)
.++|.|+. +|-..+++.+..++++|++.|-+|++. + |.|+++.+||.+.|.
T Consensus 92 ~~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~ 146 (381)
T 3hsk_A 92 LECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIVNPEHID 146 (381)
T ss_dssp GGCSEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCEECTTTCGGGGH
T ss_pred ccCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCCCCcEEecccCHHHcC
Confidence 37888886 999999999999999999988899986 2 468999999988774
No 43
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A
Probab=94.87 E-value=0.0028 Score=46.32 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=40.3
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCe-------------EEecC-----CCCCCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPM-------------FVCGV-----NLDKFEW 65 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt-------------~V~GV-----N~~~y~~ 65 (69)
|+|.|+. +|...+++.+..+ ++|++.|.+|+|.. +++. ++||+ |.+.++.
T Consensus 80 ~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~~ 149 (352)
T 2nqt_A 80 GHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLRG 149 (352)
T ss_dssp TCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHTT
T ss_pred CCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHhc
Confidence 7888887 9999999999999 99988777899875 3434 48999 8777654
No 44
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=78.69 E-value=1.7 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.061 Sum_probs=24.6
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcCCCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISAPSA 49 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISaPs~ 49 (69)
+-|=.++.+.++..|++||.||+|.+..-
T Consensus 80 vGGGIrs~e~~~~~l~~GadkVii~t~a~ 108 (243)
T 4gj1_A 80 VGGGIRSKEEVKALLDCGVKRVVIGSMAI 108 (243)
T ss_dssp EESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred eccccccHHHHHHHHHcCCCEEEEccccc
Confidence 35777899999999999999999987653
No 45
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=59.66 E-value=15 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.7
Q ss_pred eeEeeecee--cHHHHHHHhhC-CCCeEEEcCCCCCCCeEEecCCC
Q psy6888 18 IFLVLFLSV--NNILQTAHLAG-GAKKVIISAPSADAPMFVCGVNL 60 (69)
Q Consensus 18 ~~~~tG~~~--t~e~a~~HL~~-GAKkVIISaPs~d~pt~V~GVN~ 60 (69)
.++.||.+. +++.+...++. |++ +-+..++.+..+|.|-|.
T Consensus 37 ~~v~TG~l~~~~R~e~~~~i~~~Gg~--v~~sVSkkTd~LV~G~~~ 80 (109)
T 2k6g_A 37 IFVITGVLESIERDEAKSLIERYGGK--VTGNVSKKTNYLVMGRDS 80 (109)
T ss_dssp EEEEESBCSSCCHHHHHHHHHHTTCE--EESSCCTTCCEEEECBCC
T ss_pred EEEEeeeCCCCCHHHHHHHHHHcCCE--eeCcccCCceEEEECCCC
Confidence 456699995 58888887764 766 456677778888888653
No 46
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.97 E-value=18 Score=22.37 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.5
Q ss_pred eeEeeecee--cHHHHHHHhhC-CCCeEEEcCCCCCCCeEEecCCC
Q psy6888 18 IFLVLFLSV--NNILQTAHLAG-GAKKVIISAPSADAPMFVCGVNL 60 (69)
Q Consensus 18 ~~~~tG~~~--t~e~a~~HL~~-GAKkVIISaPs~d~pt~V~GVN~ 60 (69)
.++.||.+. +++.++..+++ |++ +-+..++.+..+|.|-|.
T Consensus 27 ~~v~TG~l~~~~R~e~~~~i~~~Ggk--v~~sVSkkTd~LV~G~~~ 70 (112)
T 2ebu_A 27 IFVITGVLESIERDEAKSLIERYGGK--VTGNVSKKTNYLVMGRDS 70 (112)
T ss_dssp EEEECSCCSSSCHHHHHHHHHHTTCE--ECSSCCSSCCEEEECSSC
T ss_pred EEEEeeeCCCCCHHHHHHHHHHcCCE--EeccccCCeeEEEecCCC
Confidence 456799994 68888887764 776 355666777888888653
No 47
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=45.48 E-value=18 Score=21.39 Aligned_cols=40 Identities=25% Similarity=0.187 Sum_probs=27.8
Q ss_pred eeEeeecee-cHHHHHHHhh-CCCCeEEEcCCCCCCCeEEecCC
Q psy6888 18 IFLVLFLSV-NNILQTAHLA-GGAKKVIISAPSADAPMFVCGVN 59 (69)
Q Consensus 18 ~~~~tG~~~-t~e~a~~HL~-~GAKkVIISaPs~d~pt~V~GVN 59 (69)
.++.||.+. +++.+...++ .|++ +-+..++.+..+|.|-|
T Consensus 12 ~~v~TG~l~~~R~e~~~~i~~~Gg~--v~~sVskkt~~LV~g~~ 53 (92)
T 1l7b_A 12 TFVITGELSRPREEVKALLRRLGAK--VTDSVSRKTSYLVVGEN 53 (92)
T ss_dssp EEECSTTTTSCHHHHHHHHHHTTCE--EESCCSSSCCCBEECSS
T ss_pred EEEEecCCCCCHHHHHHHHHHcCCE--EeCcccCCeeEEEeCCC
Confidence 456699885 6777877776 4776 35666677777888854
No 48
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=42.83 E-value=21 Score=24.28 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=23.7
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
++.-|.-++.|.+.. +++||.-|..|.+
T Consensus 152 iIaGGlI~t~edv~~-l~aGA~aIsTs~~ 179 (188)
T 1vkf_A 152 VIAAGLVETEEEARE-ILKHVSAISTSSR 179 (188)
T ss_dssp EEEESCCCSHHHHHH-HTTTSSEEEECCH
T ss_pred EEEECCcCCHHHHHH-HHCCCeEEEeCCH
Confidence 345899999999999 9999999877655
No 49
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=41.68 E-value=27 Score=25.24 Aligned_cols=30 Identities=20% Similarity=0.018 Sum_probs=24.1
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEEcCCC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVIISaPs 48 (69)
++.-|-.++.++++.-+++||.+|++.+..
T Consensus 230 V~vGGGIrs~Eda~~ll~aGAD~VVVGSAa 259 (286)
T 3vk5_A 230 LFVSGNVRSGRQVTEYLDSGADYVGFAGAL 259 (286)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEESGGG
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECchh
Confidence 334566779999999999999999996543
No 50
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=36.61 E-value=13 Score=24.18 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=15.9
Q ss_pred eeceecHHHHHHHh-hCCCCeEEEcCC
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVIISAP 47 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVIISaP 47 (69)
||.. ...+...| ++||++|.+.+|
T Consensus 132 TG~T--l~~a~~~L~~~ga~~V~v~~~ 156 (208)
T 1wd5_A 132 TGAS--MEAALSVVFQEGPRRVVVAVP 156 (208)
T ss_dssp SCHH--HHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHH--HHHHHHHHHHcCCCEEEEEEE
Confidence 8864 33444455 479999887666
No 51
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=29.61 E-value=11 Score=26.24 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=26.7
Q ss_pred cceeeEeeeceecHHHHHHHhh--CCCCeEEEcCCCCC-CCeEE--ecCC
Q psy6888 15 KFLIFLVLFLSVNNILQTAHLA--GGAKKVIISAPSAD-APMFV--CGVN 59 (69)
Q Consensus 15 ~~~~~~~tG~~~t~e~a~~HL~--~GAKkVIISaPs~d-~pt~V--~GVN 59 (69)
..|.+++||...-......-|+ ..++.|++..||.. .|-+. +||+
T Consensus 164 ~~D~v~iTGsTlvN~Ti~~lL~~~~~~~~vvl~GPS~~~~P~~~~~~Gv~ 213 (249)
T 3npg_A 164 EVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVT 213 (249)
T ss_dssp GCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCC
T ss_pred cCCEEEEEeeeeccCCHHHHHHhCcccCeEEEEecCchhhHHHHhhCCcc
Confidence 4678888887654444444332 24667788888754 45322 5554
No 52
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=28.44 E-value=15 Score=26.08 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=24.5
Q ss_pred cceeeEeeeceecHHHHHHHhh--CCCCeEEEcCCCCC
Q psy6888 15 KFLIFLVLFLSVNNILQTAHLA--GGAKKVIISAPSAD 50 (69)
Q Consensus 15 ~~~~~~~tG~~~t~e~a~~HL~--~GAKkVIISaPs~d 50 (69)
..|.|++||...-...+..-|+ .-|+.|++..||..
T Consensus 186 ~~D~viiTgstlvN~Tl~~lL~~~~~a~~vvl~GPStp 223 (270)
T 3l5o_A 186 ECDYVYITCASVVDKTLPRLLELSRNARRITLVGPGTP 223 (270)
T ss_dssp GCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTTCC
T ss_pred cCCEEEEEeehhhcCCHHHHHhhCCCCCEEEEECCCch
Confidence 3577888888765555555554 34778888888754
No 53
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=27.70 E-value=36 Score=21.67 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=14.3
Q ss_pred eeceecHHHHHHHhh-CCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHLA-GGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL~-~GAKkVIISa 46 (69)
||.. ...+...|+ +||++|.+.+
T Consensus 110 TG~T--l~~a~~~L~~~Ga~~V~~~~ 133 (185)
T 2geb_A 110 SGLT--LAYLRETLLGRKPRSLKICT 133 (185)
T ss_dssp SCHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred CHHH--HHHHHHHHHhcCCCEEEEEE
Confidence 8864 334445554 6999876544
No 54
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=27.40 E-value=32 Score=24.42 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.4
Q ss_pred HHHHHHhhCCCCeEEEcCC
Q psy6888 29 ILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 29 e~a~~HL~~GAKkVIISaP 47 (69)
+.++..|++||.+|||=+=
T Consensus 152 ~~~~~~LeAGA~~ViiEar 170 (251)
T 1qwg_A 152 KLINFDLDAGADYVIIEGR 170 (251)
T ss_dssp HHHHHHHHHTCSEEEECCT
T ss_pred HHHHHHHHCCCcEEEEeee
Confidence 4567789999999999663
No 55
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Probab=27.23 E-value=36 Score=22.39 Aligned_cols=23 Identities=4% Similarity=-0.094 Sum_probs=14.2
Q ss_pred eeceecHHHHHHHh-hCCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVIISa 46 (69)
||.. ...+...| ++||++|.+.+
T Consensus 130 TG~T--l~aa~~~L~~~Ga~~V~v~~ 153 (211)
T 1pzm_A 130 SAIT--LQYLMRFMLAKKPASLKTVV 153 (211)
T ss_dssp SCHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred cHHH--HHHHHHHHHhcCCCEEEEEE
Confidence 8864 33444455 46999876544
No 56
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=26.87 E-value=40 Score=18.47 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=16.9
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEc
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIIS 45 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIIS 45 (69)
+++.++. +|...+...+..-++.|.+++.+|
T Consensus 69 ~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 69 GFDAVISAAPFFLTPIIAKAAKAAGAHYFDLT 100 (118)
T ss_dssp TCSEEEECSCGGGHHHHHHHHHHTTCEEECCC
T ss_pred CCCEEEECCCchhhHHHHHHHHHhCCCEEEec
Confidence 4455554 554444555555556666666554
No 57
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=26.70 E-value=17 Score=25.70 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=23.1
Q ss_pred cceeeEeeeceecH---HHHHHHhhCCCCeEEEcCCCCC
Q psy6888 15 KFLIFLVLFLSVNN---ILQTAHLAGGAKKVIISAPSAD 50 (69)
Q Consensus 15 ~~~~~~~tG~~~t~---e~a~~HL~~GAKkVIISaPs~d 50 (69)
..|.+++||...-. +..-.+.+ .|++||+..|+..
T Consensus 186 ~aD~viiTGsTlvN~Ti~~lL~~~~-~a~~vvl~GPS~p 223 (270)
T 2h1q_A 186 ECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTP 223 (270)
T ss_dssp GCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCC
T ss_pred cCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecChh
Confidence 46678888876544 44444443 5778999999854
No 58
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Probab=26.09 E-value=38 Score=22.59 Aligned_cols=23 Identities=4% Similarity=-0.181 Sum_probs=14.4
Q ss_pred eeceecHHHHHHHh-hCCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVIISa 46 (69)
||.. ...+...| ++||++|.+.+
T Consensus 115 TG~T--l~~a~~~L~~~Ga~~V~v~~ 138 (220)
T 1tc1_A 115 TALT--LNYLYHMYFTRRPASLKTVV 138 (220)
T ss_dssp SCHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred cHHH--HHHHHHHHHhcCCCEEEEEE
Confidence 8864 34455555 46999876544
No 59
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=25.65 E-value=52 Score=21.53 Aligned_cols=27 Identities=19% Similarity=-0.054 Sum_probs=21.7
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcCC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISAP 47 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISaP 47 (69)
..|-.++.+.+..-++.||.+|++...
T Consensus 84 ~~Ggi~~~~~~~~~l~~Gad~V~ig~~ 110 (247)
T 3tdn_A 84 ASGGAGKMEHFLEAFLRGADKVSINTA 110 (247)
T ss_dssp EESCCCSHHHHHHHHHTTCSEECCSHH
T ss_pred EeCCCCCHHHHHHHHHcCCCeeehhhH
Confidence 366667888999889999999998653
No 60
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=24.92 E-value=85 Score=20.27 Aligned_cols=26 Identities=23% Similarity=0.009 Sum_probs=20.2
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
.-|-.++.+.+..-++.||..|++..
T Consensus 79 ~~ggI~~~~~~~~~~~~Gad~V~lg~ 104 (253)
T 1thf_D 79 VGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 35555788888888899999998854
No 61
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=24.12 E-value=89 Score=20.43 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=19.3
Q ss_pred eeEeeeceec----HHHHHHHhhCCCCeEEEcC
Q psy6888 18 IFLVLFLSVN----NILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 18 ~~~~tG~~~t----~e~a~~HL~~GAKkVIISa 46 (69)
.+++||...+ ++-++...+.||+ |+++.
T Consensus 8 ~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~ 39 (256)
T 4fs3_A 8 TYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTY 39 (256)
T ss_dssp EEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCE-EEEEE
Confidence 6888997642 4556667788986 66654
No 62
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=24.11 E-value=89 Score=20.24 Aligned_cols=26 Identities=12% Similarity=-0.144 Sum_probs=20.6
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
.-|-.++.+.+..-++.||.+|++..
T Consensus 78 ~~Ggi~~~~~~~~~~~~Gad~V~lg~ 103 (241)
T 1qo2_A 78 IGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_dssp EESSCCSHHHHHHHHHTTCCEEEECH
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECc
Confidence 34555688888888899999999854
No 63
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Probab=23.60 E-value=47 Score=21.46 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=14.2
Q ss_pred eeceecHHHHHHHh-hCCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVIISa 46 (69)
||.. ...+...| +.||++|.+.+
T Consensus 130 TG~T--l~~a~~~L~~~Ga~~V~~~~ 153 (205)
T 1yfz_A 130 SGLT--LAYLRETLLGRKPRSLKICT 153 (205)
T ss_dssp SCHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred cHHH--HHHHHHHHHhcCCCEEEEEE
Confidence 8864 33444555 46999876544
No 64
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=22.99 E-value=61 Score=22.31 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=25.1
Q ss_pred cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC
Q psy6888 15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS 48 (69)
Q Consensus 15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs 48 (69)
++|.|++ |.-....+.+...|++| |.|+++.|.
T Consensus 58 ~~DvViiatp~~~h~~~~~~al~aG-~~Vv~ekp~ 91 (320)
T 1f06_A 58 DVDVLFLCMGSATDIPEQAPKFAQF-ACTVDTYDN 91 (320)
T ss_dssp TCSEEEECSCTTTHHHHHHHHHTTT-SEEECCCCC
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCC-CEEEECCCC
Confidence 5677776 66666677888888887 579998885
No 65
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=22.55 E-value=77 Score=20.48 Aligned_cols=26 Identities=23% Similarity=-0.029 Sum_probs=21.0
Q ss_pred eeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 21 VLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 21 ~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
..|-+++.+.+..-++.||..|++..
T Consensus 80 ~~Ggi~~~~~~~~~~~~Gad~V~lg~ 105 (252)
T 1ka9_F 80 VGGGVRSLEDARKLLLSGADKVSVNS 105 (252)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred EECCcCCHHHHHHHHHcCCCEEEECh
Confidence 36677788888888888999998855
No 66
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=22.38 E-value=51 Score=20.40 Aligned_cols=21 Identities=10% Similarity=-0.145 Sum_probs=12.7
Q ss_pred eeceecHHHHHHHh-hCCCCeEEE
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVII 44 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVII 44 (69)
||.. ...+...| ++||+.|-+
T Consensus 132 TG~T--l~~~~~~L~~~Ga~~V~~ 153 (175)
T 1vch_A 132 SGET--MRAMEKMVLRAGGHVVAR 153 (175)
T ss_dssp SSHH--HHHHHHHHHHTTCEEEEE
T ss_pred chHH--HHHHHHHHHHcCCeEEEE
Confidence 7865 33344444 579998744
No 67
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Probab=21.67 E-value=54 Score=20.67 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=13.9
Q ss_pred eeceecHHHHHHHhh-CCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHLA-GGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL~-~GAKkVIISa 46 (69)
||.. ...+...|+ .||++|.+.+
T Consensus 107 TG~T--l~~a~~~L~~~ga~~v~~~~ 130 (183)
T 1hgx_A 107 TGLT--MYQLLNNLQMRKPASLKVCT 130 (183)
T ss_dssp SSHH--HHHHHHHHHTTCCSEEEEEE
T ss_pred CHHH--HHHHHHHHHhcCCCEEEEEE
Confidence 7764 344555554 6999875533
No 68
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.40 E-value=38 Score=19.00 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.7
Q ss_pred eeceecHHHHHHHhhCC
Q psy6888 22 LFLSVNNILQTAHLAGG 38 (69)
Q Consensus 22 tG~~~t~e~a~~HL~~G 38 (69)
.|.+.++..|+..+.+|
T Consensus 17 ~gla~SR~~A~~lI~~G 33 (71)
T 2cqj_A 17 LRMAQHLQAAVAFVEQG 33 (71)
T ss_dssp TTCSSSHHHHHHHHHTT
T ss_pred hCCcCCHHHHHHHHHCC
Confidence 89999999999999877
No 69
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=20.99 E-value=1.1e+02 Score=21.00 Aligned_cols=27 Identities=4% Similarity=-0.135 Sum_probs=20.7
Q ss_pred eEeeeceecHHHHHHHhhCCCCeEEEcC
Q psy6888 19 FLVLFLSVNNILQTAHLAGGAKKVIISA 46 (69)
Q Consensus 19 ~~~tG~~~t~e~a~~HL~~GAKkVIISa 46 (69)
+++-|=.++.++++.-++ ||.+||+-+
T Consensus 185 v~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 185 LFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp EEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred EEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 334455679999999777 999999854
No 70
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=20.17 E-value=66 Score=19.34 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=12.1
Q ss_pred eeceecHHHHHHHhh-CCCCeE
Q psy6888 22 LFLSVNNILQTAHLA-GGAKKV 42 (69)
Q Consensus 22 tG~~~t~e~a~~HL~-~GAKkV 42 (69)
||.. ...+...|+ +||++|
T Consensus 95 TG~T--l~~a~~~L~~~ga~~v 114 (153)
T 1vdm_A 95 TGKT--LEVVIEEVKKLGAKEI 114 (153)
T ss_dssp SCHH--HHHHHHHHHTTTBSEE
T ss_pred ChHH--HHHHHHHHHHcCCCEE
Confidence 7854 344555554 699987
No 71
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=20.11 E-value=60 Score=20.26 Aligned_cols=23 Identities=9% Similarity=-0.289 Sum_probs=13.7
Q ss_pred eeceecHHHHHHHh-hCCCCeEEEcC
Q psy6888 22 LFLSVNNILQTAHL-AGGAKKVIISA 46 (69)
Q Consensus 22 tG~~~t~e~a~~HL-~~GAKkVIISa 46 (69)
||.. ...+...| ++||+.|-+.+
T Consensus 132 TG~T--l~~~~~~L~~~Ga~~v~~~~ 155 (180)
T 1zn8_A 132 TGGT--MNAACELLGRLQAEVLECVS 155 (180)
T ss_dssp SSHH--HHHHHHHHHHTTCEEEEEEE
T ss_pred cHHH--HHHHHHHHHHcCCEEEEEEE
Confidence 7764 33344444 57999876543
Done!