RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6888
         (69 letters)



>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 172

 Score = 35.7 bits (82), Expect = 1e-04
 Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 2/29 (6%)

Query: 33  AHLAGGAKKVIISAPSADA--PMFVCGVN 59
            +   G K +      AD     FV   N
Sbjct: 98  LYEKAGVKAIFQGGEKADVAEVSFVAQAN 126


>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
           [TaxId: 2180]}
          Length = 171

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 4/33 (12%), Positives = 9/33 (27%), Gaps = 2/33 (6%)

Query: 33  AHLAGGAKKVIISAPSADAP--MFVCGVNLDKF 63
            +   G K +       +     F    N ++ 
Sbjct: 97  MYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEES 129


>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Human(Homo sapiens), liver
           isoform [TaxId: 9606]}
          Length = 169

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 25/31 (80%), Positives = 28/31 (90%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           AHL GGAK+VIISAPSADAPMFV GVN +K+
Sbjct: 108 AHLQGGAKRVIISAPSADAPMFVMGVNHEKY 138


>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
           [TaxId: 2287]}
          Length = 178

 Score = 31.1 bits (70), Expect = 0.005
 Identities = 4/33 (12%), Positives = 8/33 (24%), Gaps = 4/33 (12%)

Query: 33  AHLAGGAKKVIISAPSADA---PMFVCGVNLDK 62
            +L    +  I             F    N ++
Sbjct: 96  IYLQLQ-RNAIFQGGEKAEVADISFSALCNYNE 127


>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
          Length = 166

 Score = 29.9 bits (67), Expect = 0.011
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSAD-APMFVCGVNLDKF 63
            H+  GAKKV+++ PS D  PMFV G N DK+
Sbjct: 107 KHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 138


>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Achromobacter xylosoxidans
           [TaxId: 85698]}
          Length = 173

 Score = 28.1 bits (62), Expect = 0.060
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 33  AHLAGGAKKVIISAPSAD--APMFVCGVNLDKF 63
           AH+ GGAKKVIISAP         V GVN    
Sbjct: 110 AHIKGGAKKVIISAPGGADVDATVVYGVNHGTL 142


>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {South China Sea lobster
           (Palinurus versicolor) [TaxId: 150436]}
          Length = 169

 Score = 26.0 bits (57), Expect = 0.30
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVN 59
           AH  GGAKKVIISAPSADAPMFVCGVN
Sbjct: 106 AHFKGGAKKVIISAPSADAPMFVCGVN 132


>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
          Length = 190

 Score = 25.8 bits (56), Expect = 0.32
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 34  HLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE 67
              G  K VI +  S  A   V GVN  ++   E
Sbjct: 124 LRGGARKVVISAPASGGAKTLVMGVNHHEYNPSE 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 240,794
Number of extensions: 7706
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 9
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)