Query psy6889
Match_columns 166
No_of_seqs 10 out of 12
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 21:03:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0132|consensus 71.4 45 0.00097 34.0 10.3 67 51-117 579-656 (894)
2 KOG2236|consensus 65.6 47 0.001 31.7 8.8 19 52-70 404-422 (483)
3 PTZ00449 104 kDa microneme/rho 52.6 1.6E+02 0.0035 29.8 10.3 47 88-134 617-666 (943)
4 KOG0132|consensus 50.2 1.8E+02 0.004 29.8 10.4 11 76-86 620-630 (894)
5 KOG1924|consensus 48.2 2.2E+02 0.0048 29.7 10.7 23 125-147 608-630 (1102)
6 KOG1924|consensus 44.8 2.1E+02 0.0045 29.9 9.9 8 140-147 638-645 (1102)
7 KOG0307|consensus 39.3 4.4E+02 0.0096 27.7 11.3 21 8-29 688-708 (1049)
8 PF12439 GDE_N: Glycogen debra 38.2 16 0.00036 29.8 1.1 20 136-155 91-110 (223)
9 cd03484 MutL_Trans_hPMS_2_like 34.3 28 0.0006 26.4 1.7 30 5-34 35-64 (142)
10 KOG2236|consensus 27.2 3.4E+02 0.0074 26.2 7.8 7 25-31 378-384 (483)
11 cd01800 SF3a120_C Ubiquitin-li 25.9 38 0.00082 22.8 1.1 14 138-151 32-45 (76)
12 PF07887 Calmodulin_bind: Calm 25.8 17 0.00036 32.4 -0.9 21 9-29 159-184 (299)
13 PTZ00449 104 kDa microneme/rho 20.3 9.5E+02 0.02 24.7 12.1 31 107-137 630-660 (943)
No 1
>KOG0132|consensus
Probab=71.36 E-value=45 Score=33.96 Aligned_cols=67 Identities=28% Similarity=0.460 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC
Q psy6889 51 RPSQIPRSVRPSQIPGPVRPSQIPGSVR-------PSQIPGSVRPSQIPRSV----RPSQIPGSVRPSQIPGSVRPSQ 117 (166)
Q Consensus 51 ~PsQIPG~~~P~QiPG~p~P~QiPG~~~-------P~QiPG~~~psQIPg~~----~psQIPg~~~psQIPg~~~p~Q 117 (166)
++..-++...|...||.+.++..|..+. |.-.|-.+.+..+|++. .+-..|++.++.-+|+.--+++
T Consensus 579 pp~g~~~~~~P~~~pg~P~~~~~Ppa~p~~~~~ppPgf~PnpPpP~~~Pg~np~~pPpg~~pP~~pPp~~Ppm~~pp~ 656 (894)
T KOG0132|consen 579 PPVGRPRPQKPPPRPGAPIPSGEPPAFPGPMWHPPPGFVPNPPPPPLRPGYNPYPPPPGFMPPTSPPPGQPPMGIPPQ 656 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Confidence 3444455555556666666666665555 33333344455555554 2223344444444444433333
No 2
>KOG2236|consensus
Probab=65.63 E-value=47 Score=31.72 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q psy6889 52 PSQIPRSVRPSQIPGPVRP 70 (166)
Q Consensus 52 PsQIPG~~~P~QiPG~p~P 70 (166)
++.+.+.....|.+-|+.+
T Consensus 404 p~~~~~s~p~pq~qNyppp 422 (483)
T KOG2236|consen 404 PSSSDNSGPSPQQQNYPPP 422 (483)
T ss_pred ccccCCCCCCcccCCCCCC
Confidence 4455555555555554444
No 3
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=52.59 E-value=1.6e+02 Score=29.78 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6889 88 PSQIPRSVRPSQ---IPGSVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEP 134 (166)
Q Consensus 88 psQIPg~~~psQ---IPg~~~psQIPg~~~p~QiPg~p~~sQiPg~~~~p 134 (166)
.+-+|.++--++ +|-++.++|-|.++..+-.|-.+..+++|+-++.|
T Consensus 617 ~~d~PkSPK~PespksPKsP~sPqrP~SPkRPEsPKiPesPK~PkSPKpP 666 (943)
T PTZ00449 617 LLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666 (943)
T ss_pred cccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 344554433333 33333444555544444444444444444433333
No 4
>KOG0132|consensus
Probab=50.22 E-value=1.8e+02 Score=29.83 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=4.5
Q ss_pred CCCCCCCCCCC
Q psy6889 76 SVRPSQIPGSV 86 (166)
Q Consensus 76 ~~~P~QiPG~~ 86 (166)
.+.|...|||.
T Consensus 620 pPpP~~~Pg~n 630 (894)
T KOG0132|consen 620 PPPPPLRPGYN 630 (894)
T ss_pred CCCCCCCCCCC
Confidence 33344444443
No 5
>KOG1924|consensus
Probab=48.19 E-value=2.2e+02 Score=29.72 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCcCchhhheeeee
Q psy6889 125 SQIPRKSKEPKLMGREVERRKFM 147 (166)
Q Consensus 125 sQiPg~~~~p~lpG~~~~~~~~~ 147 (166)
+-+|-+=+.-+..-.||--|+|-
T Consensus 608 PvlP~gLkpKK~~k~e~~Mrr~n 630 (1102)
T KOG1924|consen 608 PVLPFGLKPKKVYKPEVPMRRFN 630 (1102)
T ss_pred ccCCCCCCccccCCCCCccccCC
Confidence 34555545555556666666553
No 6
>KOG1924|consensus
Probab=44.82 E-value=2.1e+02 Score=29.92 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=2.9
Q ss_pred hhheeeee
Q psy6889 140 EVERRKFM 147 (166)
Q Consensus 140 ~~~~~~~~ 147 (166)
++.+.-|.
T Consensus 638 d~s~~cFW 645 (1102)
T KOG1924|consen 638 DLSENCFW 645 (1102)
T ss_pred ccCcccee
Confidence 33333333
No 7
>KOG0307|consensus
Probab=39.31 E-value=4.4e+02 Score=27.69 Aligned_cols=21 Identities=14% Similarity=-0.067 Sum_probs=8.6
Q ss_pred ccccCccceecceeeeccccCC
Q psy6889 8 LKLNDNEWKLNGVFHKWSQNEG 29 (166)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (166)
|++.+++ -++.+--.|.++.+
T Consensus 688 l~~~~s~-~~~~~~P~~~~~~~ 708 (1049)
T KOG0307|consen 688 LPLLPSG-SAGHQSPPLTQLRQ 708 (1049)
T ss_pred cCcCccc-cccccCCCcccccc
Confidence 3444444 22333334554443
No 8
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=38.18 E-value=16 Score=29.77 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=17.6
Q ss_pred cCchhhheeeeeeeccceee
Q psy6889 136 LMGREVERRKFMVRGKNMVF 155 (166)
Q Consensus 136 lpG~~~~~~~~~~~~~~~~~ 155 (166)
+-|+.+|++-||+.|+|.+.
T Consensus 91 ~~~~~l~k~i~M~~g~Nt~~ 110 (223)
T PF12439_consen 91 VGDVVLEKRIFMVHGENTTV 110 (223)
T ss_pred ECCEEEEEEEEEECCCCEEE
Confidence 46899999999999999874
No 9
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=34.35 E-value=28 Score=26.44 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=22.1
Q ss_pred cccccccCccceecceeeeccccCCCcccC
Q psy6889 5 DNELKLNDNEWKLNGVFHKWSQNEGRSVRP 34 (166)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (166)
++|.++-+.+|++.|.+.+...+.+|+.+-
T Consensus 35 ~~~~~~~~~~~~i~G~is~p~~~~~r~~~~ 64 (142)
T cd03484 35 DSDEDLADSEVKITGYISKPSHGCGRSSSD 64 (142)
T ss_pred ccccccCCCcEEEEEEECCCcccCCCCCCC
Confidence 456666778999999999886666665443
No 10
>KOG2236|consensus
Probab=27.15 E-value=3.4e+02 Score=26.17 Aligned_cols=7 Identities=43% Similarity=0.520 Sum_probs=3.8
Q ss_pred cccCCCc
Q psy6889 25 SQNEGRS 31 (166)
Q Consensus 25 ~~~~~~~ 31 (166)
-+|+|+.
T Consensus 378 ~~~~gf~ 384 (483)
T KOG2236|consen 378 DQNRGFK 384 (483)
T ss_pred ccccCCC
Confidence 3556655
No 11
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=25.91 E-value=38 Score=22.79 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=6.0
Q ss_pred chhhheeeeeeecc
Q psy6889 138 GREVERRKFMVRGK 151 (166)
Q Consensus 138 G~~~~~~~~~~~~~ 151 (166)
|+..++-+.+..|+
T Consensus 32 gip~~~q~L~~~G~ 45 (76)
T cd01800 32 GMPAGKQKLQYEGI 45 (76)
T ss_pred CCCHHHEEEEECCE
Confidence 33344444444443
No 12
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.
Probab=25.76 E-value=17 Score=32.39 Aligned_cols=21 Identities=43% Similarity=0.985 Sum_probs=17.9
Q ss_pred cccCcccee-----cceeeeccccCC
Q psy6889 9 KLNDNEWKL-----NGVFHKWSQNEG 29 (166)
Q Consensus 9 ~~~~~~~~~-----~~~~~~~~~~~~ 29 (166)
+|+|.-|+| +|+||||-.++|
T Consensus 159 ~L~DeVwRLe~Igk~G~~hk~L~~~~ 184 (299)
T PF07887_consen 159 SLDDEVWRLEKIGKDGAFHKRLKKNG 184 (299)
T ss_pred CCCCchhhhhhccccCHHHHHHHHcC
Confidence 689999998 689999988765
No 13
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=20.26 E-value=9.5e+02 Score=24.65 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q psy6889 107 SQIPGSVRPSQIPGSVRPSQIPRKSKEPKLM 137 (166)
Q Consensus 107 sQIPg~~~p~QiPg~p~~sQiPg~~~~p~lp 137 (166)
+-+|-++.++|.|.++.++-.|+.+..|+.|
T Consensus 630 pksPKsP~sPqrP~SPkRPEsPKiPesPK~P 660 (943)
T PTZ00449 630 PKSPKRPPPPQRPSSPERPEGPKIIKSPKPP 660 (943)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 3445555666666666666666666555554
Done!