Query psy6889
Match_columns 166
No_of_seqs 10 out of 12
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 21:03:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jz8_A Uncharacterized protein 16.8 46 0.0016 24.1 1.1 31 126-156 5-35 (87)
2 3lae_A UPF0053 protein HI0107; 10.3 86 0.003 20.4 0.8 16 6-21 2-17 (81)
3 2g3r_A Tumor suppressor P53-bi 9.5 92 0.0031 23.9 0.8 10 18-27 9-18 (123)
4 3nuh_B DNA gyrase subunit B; t 9.3 63 0.0021 29.0 -0.2 12 136-147 396-408 (420)
5 3llb_A Uncharacterized protein 9.1 98 0.0033 20.2 0.7 15 8-22 4-18 (83)
6 1d2s_A SHBG, sex hormone-bindi 8.0 1.1E+02 0.0038 21.9 0.7 12 7-18 80-91 (170)
7 1f5f_A SHBG, sex hormone-bindi 7.2 1.3E+02 0.0044 22.0 0.7 11 7-17 92-102 (205)
8 1i4k_A Putative snRNP SM-like 6.6 2.1E+02 0.0071 18.3 1.5 11 145-155 59-69 (77)
9 3bod_A Neurexin-1-alpha; neure 6.5 1.5E+02 0.005 21.3 0.7 9 7-15 85-93 (178)
10 1h64_1 SnRNP SM-like protein; 6.5 2.1E+02 0.0073 18.2 1.5 11 145-155 59-69 (75)
No 1
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=16.83 E-value=46 Score=24.10 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.2
Q ss_pred CCCCCCCCCCcCchhhheeeeeeeccceeee
Q psy6889 126 QIPRKSKEPKLMGREVERRKFMVRGKNMVFG 156 (166)
Q Consensus 126 QiPg~~~~p~lpG~~~~~~~~~~~~~~~~~~ 156 (166)
-||-+.+....+=+||+.|.++-.|.++-+|
T Consensus 5 ~iphf~n~~~~~~IeV~~~~v~CdG~~~plg 35 (87)
T 2jz8_A 5 NIPHFQNDLGYKIIEIGVKEFMCVGATQPFD 35 (87)
T ss_dssp CCCCBCCSSCCSEEECSCSEEECCCSSCSSS
T ss_pred cccceecCCCCCeEEEcCcEEEcCCCCCCCC
Confidence 4788899999999999999999999988765
No 2
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=10.30 E-value=86 Score=20.37 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=10.6
Q ss_pred ccccccCccceeccee
Q psy6889 6 NELKLNDNEWKLNGVF 21 (166)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (166)
|-.++.|++|.++|-.
T Consensus 2 ~i~~~~dg~~~v~g~~ 17 (81)
T 3lae_A 2 NAIQQSDGSMIIDGSA 17 (81)
T ss_dssp CEEECTTSCEEEETTC
T ss_pred CcEEeCCCEEEEEeeC
Confidence 3456777788777753
No 3
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=9.48 E-value=92 Score=23.91 Aligned_cols=10 Identities=50% Similarity=0.743 Sum_probs=7.8
Q ss_pred cceeeecccc
Q psy6889 18 NGVFHKWSQN 27 (166)
Q Consensus 18 ~~~~~~~~~~ 27 (166)
.-||-|||.|
T Consensus 9 ~rV~AkWsdn 18 (123)
T 2g3r_A 9 LRVVAKWSSN 18 (123)
T ss_dssp CEEEEECTTT
T ss_pred eEEEEEeccC
Confidence 3588899987
No 4
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=9.26 E-value=63 Score=28.99 Aligned_cols=12 Identities=67% Similarity=1.113 Sum_probs=3.2
Q ss_pred cCchhhh-eeeee
Q psy6889 136 LMGREVE-RRKFM 147 (166)
Q Consensus 136 lpG~~~~-~~~~~ 147 (166)
|||-+|| ||.|.
T Consensus 396 LMGD~VEPRR~FI 408 (420)
T 3nuh_B 396 LMGDAVEPRRAFI 408 (420)
T ss_dssp HCSCC--------
T ss_pred hcCCCchHhHHHH
Confidence 5666666 55554
No 5
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=9.05 E-value=98 Score=20.20 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=10.2
Q ss_pred ccccCccceecceee
Q psy6889 8 LKLNDNEWKLNGVFH 22 (166)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (166)
.+++|++|.++|-..
T Consensus 4 ~~~~dg~~~v~G~~~ 18 (83)
T 3llb_A 4 KPLPSGDFIVKALTP 18 (83)
T ss_dssp EECTTSCEEEETTCB
T ss_pred EEeCCCEEEEEccCC
Confidence 367788888777543
No 6
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=7.96 E-value=1.1e+02 Score=21.87 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=9.0
Q ss_pred cccccCccceec
Q psy6889 7 ELKLNDNEWKLN 18 (166)
Q Consensus 7 ~~~~~~~~~~~~ 18 (166)
+.++||++|.-=
T Consensus 80 ~~~vnDG~WH~V 91 (170)
T 1d2s_A 80 GPRLDDGRWHQV 91 (170)
T ss_dssp SCCCCSSSCEEE
T ss_pred CCccCCCCCEEE
Confidence 457999999643
No 7
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=7.17 E-value=1.3e+02 Score=22.01 Aligned_cols=11 Identities=27% Similarity=0.743 Sum_probs=8.6
Q ss_pred cccccCcccee
Q psy6889 7 ELKLNDNEWKL 17 (166)
Q Consensus 7 ~~~~~~~~~~~ 17 (166)
+.+|||++|.-
T Consensus 92 ~~~vnDG~WH~ 102 (205)
T 1f5f_A 92 GPRLDDGRWHQ 102 (205)
T ss_dssp SCCCCSSSCEE
T ss_pred CCccCCCCCEE
Confidence 45799999964
No 8
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=6.60 E-value=2.1e+02 Score=18.30 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=0.0
Q ss_pred eeeeeccceee
Q psy6889 145 KFMVRGKNMVF 155 (166)
Q Consensus 145 ~~~~~~~~~~~ 155 (166)
.+++||.|.++
T Consensus 59 ~v~iRG~~I~~ 69 (77)
T 1i4k_A 59 SVVIRGDTVVF 69 (77)
T ss_dssp EEEECGGGEEE
T ss_pred EEEECCCEEEE
No 9
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=6.50 E-value=1.5e+02 Score=21.27 Aligned_cols=9 Identities=22% Similarity=0.542 Sum_probs=0.0
Q ss_pred cccccCccc
Q psy6889 7 ELKLNDNEW 15 (166)
Q Consensus 7 ~~~~~~~~~ 15 (166)
..++||++|
T Consensus 85 ~~~vnDg~W 93 (178)
T 3bod_A 85 NAIINDGKY 93 (178)
T ss_dssp SSCCCSSSC
T ss_pred CcCccCCCe
No 10
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=6.50 E-value=2.1e+02 Score=18.22 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=0.0
Q ss_pred eeeeeccceee
Q psy6889 145 KFMVRGKNMVF 155 (166)
Q Consensus 145 ~~~~~~~~~~~ 155 (166)
.+++||.|.++
T Consensus 59 ~v~iRG~~I~~ 69 (75)
T 1h64_1 59 KIVIRGDNVLA 69 (75)
T ss_dssp EEEECGGGEEE
T ss_pred EEEECCCEEEE
Done!