Query psy6889
Match_columns 166
No_of_seqs 10 out of 12
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 21:03:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2plia1 d.145.1.4 (A:5-88) Unc 37.1 4.6 0.00034 25.7 0.7 19 3-21 1-19 (84)
2 d2nqwa1 d.145.1.4 (A:4-90) Hyp 19.5 15 0.0011 22.9 0.7 14 8-21 4-17 (87)
3 d1h30a2 b.29.1.4 (A:461-678) G 15.4 19 0.0014 24.5 0.5 11 7-17 106-116 (218)
4 d1i8fa_ b.38.1.1 (A:) Archaeal 11.7 43 0.0031 20.4 1.3 12 144-155 55-66 (71)
5 d2r2za1 d.145.1.4 (A:5-88) Put 10.4 30 0.0022 21.4 0.3 12 9-20 5-16 (84)
6 d2rk5a1 d.145.1.4 (A:5-88) Put 9.4 36 0.0027 20.7 0.4 10 10-19 3-12 (84)
7 d1xk4c1 a.39.1.2 (C:4-86) Calc 9.3 23 0.0017 22.8 -0.7 15 17-31 12-26 (83)
8 d1b34b_ b.38.1.1 (B:) D2 core 9.0 63 0.0046 20.7 1.5 13 144-156 72-84 (93)
9 d2p13a1 d.145.1.4 (A:431-515) 8.9 46 0.0034 20.5 0.7 13 9-21 7-19 (85)
10 d3deda1 d.145.1.4 (A:341-427) 8.6 51 0.0037 20.3 0.8 14 8-21 4-17 (87)
No 1
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=37.12 E-value=4.6 Score=25.69 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=15.9
Q ss_pred CCcccccccCccceeccee
Q psy6889 3 SSDNELKLNDNEWKLNGVF 21 (166)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (166)
|+|+-.++++|+|.++|..
T Consensus 1 s~~~I~~~~~~~~~v~g~~ 19 (84)
T d2plia1 1 SADNIHAVSSERWRIHAAT 19 (84)
T ss_dssp CCCSEEEEETTEEEEETTC
T ss_pred CCcceEEeCCCEEEEEecC
Confidence 5777789999999999864
No 2
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=19.52 E-value=15 Score=22.95 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.3
Q ss_pred ccccCccceeccee
Q psy6889 8 LKLNDNEWKLNGVF 21 (166)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (166)
-|++||+|.++|-.
T Consensus 4 ~ki~d~~~~v~G~~ 17 (87)
T d2nqwa1 4 KVLGDGSYLFEGKT 17 (87)
T ss_dssp EECTTSCEEEETTC
T ss_pred EEECCCEEEEEEeC
Confidence 36788888888753
No 3
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.44 E-value=19 Score=24.50 Aligned_cols=11 Identities=27% Similarity=0.441 Sum_probs=8.7
Q ss_pred cccccCcccee
Q psy6889 7 ELKLNDNEWKL 17 (166)
Q Consensus 7 ~~~~~~~~~~~ 17 (166)
+.+|||++|.-
T Consensus 106 ~~~lnDg~WH~ 116 (218)
T d1h30a2 106 EIKVCDGQEHV 116 (218)
T ss_dssp ECCTTSSCCEE
T ss_pred ccccCCCCeEE
Confidence 46799999963
No 4
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=11.67 E-value=43 Score=20.43 Aligned_cols=12 Identities=42% Similarity=0.899 Sum_probs=9.5
Q ss_pred eeeeeeccceee
Q psy6889 144 RKFMVRGKNMVF 155 (166)
Q Consensus 144 ~~~~~~~~~~~~ 155 (166)
.+++|||.|.+|
T Consensus 55 g~v~iRG~~I~~ 66 (71)
T d1i8fa_ 55 GTMVVRGENVLF 66 (71)
T ss_dssp EEEEECGGGEEE
T ss_pred ceEEEeCCeEEE
Confidence 357899998876
No 5
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=10.44 E-value=30 Score=21.41 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=6.3
Q ss_pred cccCccceecce
Q psy6889 9 KLNDNEWKLNGV 20 (166)
Q Consensus 9 ~~~~~~~~~~~~ 20 (166)
|++||.|.++|-
T Consensus 5 ~i~~~~~~v~G~ 16 (84)
T d2r2za1 5 QVADNEYLVQGR 16 (84)
T ss_dssp EEETTEEEEETT
T ss_pred EECCCEEEEEee
Confidence 455555555553
No 6
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=9.42 E-value=36 Score=20.74 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=4.6
Q ss_pred ccCccceecc
Q psy6889 10 LNDNEWKLNG 19 (166)
Q Consensus 10 ~~~~~~~~~~ 19 (166)
++||+|-++|
T Consensus 3 i~d~~~~v~G 12 (84)
T d2rk5a1 3 IADNTYIVLG 12 (84)
T ss_dssp EETTEEEEET
T ss_pred ecCCEEEEEe
Confidence 4444444444
No 7
>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}
Probab=9.31 E-value=23 Score=22.77 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=11.9
Q ss_pred ecceeeeccccCCCc
Q psy6889 17 LNGVFHKWSQNEGRS 31 (166)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (166)
+-.||||+|..+|..
T Consensus 12 ii~vFhkYa~~~G~~ 26 (83)
T d1xk4c1 12 IINTFHQYSVKLGHP 26 (83)
T ss_dssp HHHHHHHHHTTSSST
T ss_pred HHHHHHHHhCcCCCc
Confidence 346899999999864
No 8
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.96 E-value=63 Score=20.67 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=10.3
Q ss_pred eeeeeeccceeee
Q psy6889 144 RKFMVRGKNMVFG 156 (166)
Q Consensus 144 ~~~~~~~~~~~~~ 156 (166)
..+++||.|+|+=
T Consensus 72 g~~liRGdnVv~I 84 (93)
T d1b34b_ 72 SKMFLRGDSVIVV 84 (93)
T ss_dssp EEEEECGGGEEEE
T ss_pred ceEEEeCCEEEEE
Confidence 4579999999864
No 9
>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}
Probab=8.94 E-value=46 Score=20.46 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=9.8
Q ss_pred cccCccceeccee
Q psy6889 9 KLNDNEWKLNGVF 21 (166)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (166)
++.||.|.++|-.
T Consensus 7 ~~~dg~~~v~G~~ 19 (85)
T d2p13a1 7 QQADGTWLMDGWI 19 (85)
T ss_dssp ECTTSCEEEETTS
T ss_pred EcCCCeEEEEecC
Confidence 5678888888854
No 10
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}
Probab=8.62 E-value=51 Score=20.33 Aligned_cols=14 Identities=21% Similarity=0.755 Sum_probs=10.5
Q ss_pred ccccCccceeccee
Q psy6889 8 LKLNDNEWKLNGVF 21 (166)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (166)
.+++||.|-++|-.
T Consensus 4 v~~~dg~~~v~G~~ 17 (87)
T d3deda1 4 VQREDGSWLVDGMV 17 (87)
T ss_dssp EECTTSCEEEETTC
T ss_pred EEecCCeEEEEeeC
Confidence 56788888888754
Done!