RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6889
(166 letters)
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 34.7 bits (79), Expect = 0.018
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 22 HKWSQNEGRSVRPSQISRSVRPSQIPRSVRPSQIPRSV-RPSQIPGPVRP--SQIPGSVR 78
HK S+ S +P P P + + PRS RP++ P P IP S +
Sbjct: 567 HKPSKIPTLSKKPEFPKDPKHPKD-PEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPK 625
Query: 79 PSQIPGSVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIPR 129
+ P S P+ P Q P S + P ++ + P S +P P+
Sbjct: 626 RPESPKS------PKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPK 670
Score = 34.3 bits (78), Expect = 0.023
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 25 SQNEGRSVRPSQISRSVRPSQIPR-SVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIP 83
EG + ++ +PS+IP S +P P P +P + + RP++
Sbjct: 551 ETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPK 610
Query: 84 GSVRP--SQIPRSVRPSQIPGSVR---PSQIPGSVRPSQIPGSVRPSQIPRKSKEP 134
P IP+S + + P S + P Q P S + P ++ + P+ K P
Sbjct: 611 SPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666
Score = 30.8 bits (69), Expect = 0.38
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 12/127 (9%)
Query: 25 SQNEGRSVRPSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVR---PSQIPGSVRPSQ 81
+ E S+ S + P + ++ + PGP + PS+IP + +
Sbjct: 527 KEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKK------PGPAKEHKPSKIPTLSKKPE 580
Query: 82 IPGSVRPSQIPRSVRPSQIPGSV-RPSQIPGSVRP--SQIPGSVRPSQIPRKSKEPKLMG 138
P + + P + + P S RP++ P IP S + + P+ K P
Sbjct: 581 FPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQ 640
Query: 139 REVERRK 145
R +
Sbjct: 641 RPSSPER 647
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 34.4 bits (79), Expect = 0.023
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 31 SVRPSQISRSVRPSQIPRSVR---PSQIPRSVRPSQIPGPVRPSQIPGSVR---PSQIPG 84
Q S + S P P+S P P +V PS P
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQ 445
Query: 85 SVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQ 117
+VRP+Q +IP S S P ++RP Q
Sbjct: 446 AVRPAQFK---EEKKIPVSKVSSLGPSTLRPIQ 475
Score = 33.2 bits (76), Expect = 0.048
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Query: 47 PRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIP--RSVRPSQIPGSV 104
P Q + V P + S PSQ + +PS + SV
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429
Query: 105 RPSQIPGSVRPSQIPGSVRPSQIPRKSKEP 134
P PS P +VRP+Q + K P
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKIP 459
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 33.6 bits (77), Expect = 0.034
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 29 GRSVRPSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGP----VRPSQIPGSVRPSQIPG 84
GR+ I P RP R + GP P +P
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPD----YNRGGEAGGPGVPGPVPVGMPAHTARPS--- 675
Query: 85 SVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIP 128
R ++ VRP+ ++R Q P P G + P
Sbjct: 676 --RVARGD-PVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDL 716
Score = 32.8 bits (75), Expect = 0.079
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 48 RSVRPSQIP----RSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPGS 103
P +P R R ++ PVRP+ ++R Q P P + P +
Sbjct: 660 PGPVPVGMPAHTARPSRVARGD-PVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA 718
Query: 104 VRPSQIPGSVRPSQIPGSVRP 124
GS + P
Sbjct: 719 AAGPAPCGSSLIASPTAPPEP 739
Score = 30.5 bits (69), Expect = 0.41
Identities = 13/64 (20%), Positives = 18/64 (28%)
Query: 25 SQNEGRSVRPSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPG 84
G VRP+ ++R Q PR P + P GS +
Sbjct: 676 RVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTA 735
Query: 85 SVRP 88
P
Sbjct: 736 PPEP 739
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.2 bits (73), Expect = 0.13
Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 11/124 (8%)
Query: 25 SQNEGRSVRPSQISRSVRPSQIPRSVRP-------SQIPRSVRPSQIP---GPVRPSQIP 74
+ R P+ SR+ RP P+S RP PS +P P
Sbjct: 2571 PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630
Query: 75 GSVRPSQIPGSVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEP 134
S ++ P +P RP P R S+ + R + + P Q PR+
Sbjct: 2631 PSPAANEPDPH-PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689
Query: 135 KLMG 138
+G
Sbjct: 2690 PTVG 2693
Score = 32.2 bits (73), Expect = 0.13
Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 33 RPSQISRSVRPSQ-IPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQI 91
P+ RSV P + PR P+ R+ RP P RP + P R G PS +
Sbjct: 2560 PPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARP-RAPVDDRGDP-RGPAPPSPL 2617
Query: 92 PRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEPKLMGREVERRK 145
P P S ++ P+ P + V R +
Sbjct: 2618 PPDTHAP------DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPR 2665
Score = 26.4 bits (58), Expect = 8.6
Identities = 15/91 (16%), Positives = 27/91 (29%)
Query: 34 PSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPR 93
P ++SR R ++ R+ + S P+ R V P P +
Sbjct: 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717
Query: 94 SVRPSQIPGSVRPSQIPGSVRPSQIPGSVRP 124
+ P + R + P+ P
Sbjct: 2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGP 2748
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 30.9 bits (70), Expect = 0.28
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 43 PSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPG 102
+Q+ R R + R +R S + Q+ P I
Sbjct: 19 SAQLSRIGRIERELRELR-SLVAEGAAGPVAK---AAEQMAAPEAAEAAPLPAAAESIAS 74
Query: 103 -SVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEPK 135
V P P + + P + +PS +P S P
Sbjct: 75 PEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPA 108
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 30.0 bits (67), Expect = 0.55
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 32 VRPSQISRSVRPSQIPRSVRPSQIPRSVR-PSQIPGPVRPSQIP--GSVRPSQIPGSVRP 88
+ I P+ + P +++ P + P P+RP P + RP+ G RP
Sbjct: 667 TQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARP 726
Query: 89 SQIP--RSVRPSQIPGSVRPSQ-IPGSVRPSQ-IPGSVRPSQ 126
R+ P+ PG RP PG RP PG RP
Sbjct: 727 PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPA 768
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 29.6 bits (66), Expect = 0.78
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 29 GRSVRPSQISRSVRPSQIPRSVRPSQIPRSVRP---SQIPGPVRPSQIPGSVR-PSQIPG 84
G VRP + S S P V P +P P + PV P+ +++ P + G
Sbjct: 503 GPIVRPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSG 562
Query: 85 SVR-------PSQIPRSVR-PSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEPKL 136
VR P R PSQ+ R +++ +P Q V+P Q+ + S + +
Sbjct: 563 IVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPM 622
Query: 137 MG 138
Sbjct: 623 EY 624
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 28.9 bits (65), Expect = 1.3
Identities = 18/58 (31%), Positives = 21/58 (36%)
Query: 31 SVRPSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRP 88
S SQ S S PR +PS PS +P P S P SV + P
Sbjct: 18 SSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVTLPPAATTQTP 75
Score = 26.6 bits (59), Expect = 7.3
Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 3/75 (4%)
Query: 26 QNEGRSVRPSQISR---SVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQI 82
+ SQ S SQ S PR +PS PS +P S
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60
Query: 83 PGSVRPSQIPRSVRP 97
P SV + P
Sbjct: 61 PPSVTLPPAATTQTP 75
>gnl|CDD|218775 pfam05844, YopD, YopD protein. This family consists of several
bacterial YopD like proteins. Virulent Yersinia species
harbour a common plasmid that encodes essential
virulence determinants (Yersinia outer proteins [Yops]),
which are regulated by the extracellular stimuli Ca2+
and temperature. YopD is thought to be a possible
transmembrane protein and contains an amphipathic
alpha-helix in its carboxy terminus.
Length = 296
Score = 28.6 bits (64), Expect = 1.4
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 89 SQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPS--------QIPRKSKEPKLMGRE 140
SQ+P+++ + +P RPSQ + +Q + S Q+ R ++E L+ R+
Sbjct: 37 SQLPQALERTSVPELPRPSQPLDTKGVTQSVSQLDSSLDMMSLLFQLARLAREEGLLQRD 96
Query: 141 VERR 144
+E +
Sbjct: 97 IENK 100
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex
Lhca2/4, chlorophyll a/b binding; Provisional.
Length = 244
Score = 28.0 bits (62), Expect = 2.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 44 SQIPRSVRPSQIPRSVRPSQIPGPV-----RPSQIPGSVRPSQIPGSV 86
Q R+VRP + R S+ PG V RP+ +PG + + GS+
Sbjct: 14 KQKSRTVRPRGVASKARASRGPGAVAAAADRPTWLPGKAAAAHLDGSL 61
Score = 26.9 bits (59), Expect = 5.5
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 62 SQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGS 121
Q VRP + R S+ PG+V + + RP+ +PG + + GS +P
Sbjct: 14 KQKSRTVRPRGVASKARASRGPGAVAAA----ADRPTWLPGKAAAAHLDGS-----LPCD 64
Query: 122 VRPSQIPRKSKEPKLMGREVERRKFMVRGKNM 153
+P +G + E K+ V+ + M
Sbjct: 65 Y--------GFDPLNLGADPEMLKWFVQAELM 88
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 28.2 bits (63), Expect = 2.2
Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 4/110 (3%)
Query: 28 EGRSVRPSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVR 87
R RP ++ + + P P Q P S P +
Sbjct: 329 AKRDRRPQMVTP--KQEGGAAVSQNHDGGTVRAPRGRPS--GSGQSPPSNSPLLSSLADT 384
Query: 88 PSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEPKLM 137
PS P V+ S + PGS Q + P +M
Sbjct: 385 PSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQELGPSVM 434
>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I. All proteins in
this family are alkylation DNA glycosylases that
function in base excision repair This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 179
Score = 27.2 bits (60), Expect = 3.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 125 SQIPRKSKEPKLMGREVERRKFMVRGKNMVFGVQEAS 161
S+IP + E K M +E+++R F G + + + +A+
Sbjct: 130 SEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQAT 166
>gnl|CDD|177598 PHA03360, PHA03360, tegument protein; Provisional.
Length = 442
Score = 27.2 bits (60), Expect = 4.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 66 GPVRPSQIPGSVRPSQIPGSVRPSQIPRSV 95
GP+ P P +VR + G+V+P Q P
Sbjct: 172 GPLEP---PSTVRGLKASGNVKPMQFPAHR 198
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 27.4 bits (61), Expect = 4.8
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 47 PRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPGSVRP 106
++ +P S SQ P S S V + PR + SQ P S
Sbjct: 649 SQATQPDVTDSSQLESQSQIPTIRSSQQVSQTRKGGSSVVPSAPAPRLAQSSQPPTSQSS 708
Query: 107 SQIPGSVRPS-QIPGSVRPSQIPRKSKEPKLMGREVERRK 145
S +P S + + SQ + ++ +++K
Sbjct: 709 SDLPPSSSQAFSLSDLPMQSQSESGLSGGRSASKKKKKKK 748
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 27.1 bits (60), Expect = 5.9
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 44 SQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPGS 103
+ P VRP+ P S RP P + P + P RP P P P
Sbjct: 373 AAAPSPVRPTPAP-STRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKL 431
Query: 104 VRPSQIPGSVRPSQIPGSVRPSQ 126
R + IP +P P + +
Sbjct: 432 TR-AAIPVDEKPKYTPPAPPKEE 453
>gnl|CDD|217421 pfam03200, Glyco_hydro_63, Mannosyl oligosaccharide glucosidase.
This is a family of eukaryotic enzymes belonging to
glycosyl hydrolase family 63. They catalyze the
specific cleavage of the non-reducing terminal glucose
residue from Glc(3)Man(9)GlcNAc(2). Mannosyl
oligosaccharide glucosidase EC:3.2.1.106 is the first
enzyme in the N-linked oligosaccharide processing
pathway.
Length = 775
Score = 27.0 bits (60), Expect = 6.1
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 42 RPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSV 95
+ R V P P+ PSQ G PS G+ RP G +R + P S+
Sbjct: 18 LSTLAERVVTPLDAPKVNDPSQFSGASNPSLYWGTYRPHLYFG-MRT-RSPLSL 69
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 26.6 bits (59), Expect = 7.9
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 9/111 (8%)
Query: 43 PSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPG 102
P Q+ P + ++ S + P + + + P S + +S + +
Sbjct: 116 PGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKN--DE 173
Query: 103 SVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEPKLMGREVERRKFMVRGKNM 153
S Q G P Q G+ + L+ R K
Sbjct: 174 SQLQQQPNGETPPQQTDGAG-------DDESEALVRLREADGTLEQRIKGA 217
>gnl|CDD|227418 COG5086, COG5086, Uncharacterized conserved protein [Function
unknown].
Length = 218
Score = 26.1 bits (57), Expect = 8.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 130 KSKEPKLMGREVERRKFMVR 149
K+ E LM E+ER KF+VR
Sbjct: 72 KNNESILMETELERVKFVVR 91
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 26.4 bits (58), Expect = 8.4
Identities = 25/134 (18%), Positives = 37/134 (27%), Gaps = 9/134 (6%)
Query: 25 SQNEGRSVRPSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPG 84
S + S+ S S RP ++ P S Q P
Sbjct: 11 SGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSFGLSKQRPS 70
Query: 85 SVRPSQIPRSVRPSQIPGSVRPSQI---PGSVRPSQIPGSVRPSQIPRKSKEPKLMGREV 141
S+ ++ P PS GS+ + GS PS+ R + G
Sbjct: 71 SLSRGRLSS---RFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSGNGP 127
Query: 142 ---ERRKFMVRGKN 152
+ RGK
Sbjct: 128 SVLSFMADVKRGKK 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.383
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,131,464
Number of extensions: 706690
Number of successful extensions: 801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 123
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)