RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6889
(166 letters)
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.3 bits (78), Expect = 0.013
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 25 SQNEGRSVRPSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPG 84
+ S + S V PS S + P +P P P P + P
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPP--PPAPAAGNPPD 63
Query: 85 SVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIPRKSKEP 134
+V + + + P + + +VR + PG P+ P +
Sbjct: 64 TVTGDSVLQRILRG--PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 29.5 bits (67), Expect = 0.46
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 42 RPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSV 95
P+ S P P + + GP RP Q +IP ++P V
Sbjct: 11 YPTFPDTSTWPVVFPE-LPAAPYGGPCRPPQHTSKAAAPRIP----ADRLPNHV 59
Score = 26.4 bits (59), Expect = 4.1
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 70 PSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIPR 129
P P P + + + + G RP Q +IP ++P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIP----ADRLPN 57
Score = 26.4 bits (59), Expect = 4.2
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 47 PRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRP 97
P+ S P P + + G RP Q +IP P
Sbjct: 7 APDDYPTFPDTSTWPVVFP-ELPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56
Score = 26.0 bits (58), Expect = 6.7
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 61 PSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPGSVRPSQIPGSVRPSQIP 119
P P P P + + + + RP Q +IP ++P
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIP----ADRLP 56
Score = 25.6 bits (57), Expect = 8.3
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 52 PSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPRSVRPSQIPGSVRPSQIP 110
P+ P PV ++P + G RP Q +IP ++P
Sbjct: 6 PAPDDYPTFPDTSTWPVVFPELP----AAPYGGPCRPPQHTSKAAAPRIP----ADRLP 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.52
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 44/156 (28%)
Query: 41 VRPSQ--IPR-SVRPSQIPRSVRPSQ-IPGP---VR---PSQIPGSVR------P--SQI 82
VR P S+ PS + S+ ++ +P P + Q+ V P Q+
Sbjct: 308 VR-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 83 PGSVR--PSQI-----PRS-------VRPSQIPGSVRPSQIPGSVRPSQIPGSVR--PSQ 126
S+ + P+S +R ++ P + S+IP S R ++ S R P
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER--KLKFSNRFLPVA 424
Query: 127 IPRKSK--EP--KLMGREVERRKFMVRGKNM---VF 155
P S P L+ +++ + K++ V+
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 29.4 bits (65), Expect = 0.70
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Query: 34 PSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPR 93
Q ++ P Q P P Q P + P Q Q + Q+ +
Sbjct: 13 QLQYGQNATPLQQPAQFMPPQDP-AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 94 SVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIP 128
+ + + V P+ P Q+
Sbjct: 72 QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106
Score = 28.6 bits (63), Expect = 1.1
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 34 PSQISRSVRPSQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPGSVRPSQIPGSVRPSQIPR 93
P Q P Q P + + P Q P Q + Q+ + +
Sbjct: 22 PLQQPAQFMPPQDPAAA-GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Query: 94 SVRPSQIPGSVRPSQIPGSVRPSQIPGSVRPSQIP 128
+ V P+ P Q+ ++ Q P
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 25.7 bits (57), Expect = 8.4
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 44 SQIPRSVRPSQIPRSVRPSQIPGPVRPSQIPG 75
S + R + + + + P +RP+ + G
Sbjct: 2 SSLARGISRRRTEVATQVEAAPTGLRPNAVVG 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.383
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,291,714
Number of extensions: 121142
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 29
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.7 bits)